Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target TCF7L2 6934 hgsc.bcm.edu 36 10 114902176 114902176 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_001146284 exon10 c.C1175T p.A392V . . . MRE11A 4361 hgsc.bcm.edu 36 11 93820232 93820232 + Silent SNP T T C novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_005591 exon15 c.A1584G p.A528A . . . GMFB 2764 hgsc.bcm.edu 36 14 54020168 54020168 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_004124 exon2 c.G71T p.R24L . . . MAP3K9 4293 hgsc.bcm.edu 36 14 70269300 70269300 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_033141 exon12 c.C2581T p.R861C . . . HYDIN 54768 hgsc.bcm.edu 36 16 69623299 69623299 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_032821 exon19 c.C2552T p.T851M . . . EFTUD2 9343 hgsc.bcm.edu 36 17 40297872 40297872 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G A A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_004247 exon14 c.C1237T p.R413C . . . ST8SIA3 51046 hgsc.bcm.edu 36 18 53178478 53178478 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_015879 exon4 c.C1115A p.T372N . . . SERPINB13 5275 hgsc.bcm.edu 36 18 59415525 59415525 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_012397 exon8 c.G1124T p.R375M . . . ZNF420 147923 hgsc.bcm.edu 36 19 42310354 42310354 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_144689 exon5 c.C621A p.S207R . . . SLC8A2 6543 hgsc.bcm.edu 36 19 52661189 52661189 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_015063 exon2 c.C284T p.A95V . . . LILRB2 10288 hgsc.bcm.edu 36 19 59475530 59475530 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_001080978 exon4 c.C283T p.R95X . . . C3 718 hgsc.bcm.edu 36 19 6629219 6629221 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 CTC CTC CTC - CTC CTC Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_000064 exon40 c.4792_4794del p.1598_1598del . . . FLG 2312 hgsc.bcm.edu 36 1 150549371 150549371 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_002016 exon3 c.A4615C p.S1539R . . . TADA1L 117143 hgsc.bcm.edu 36 1 165099751 165099751 + Silent SNP A A G novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_053053 exon4 c.T264C p.G88G . . . CRB1 23418 hgsc.bcm.edu 36 1 195713423 195713423 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_201253 exon12 c.G4012T p.D1338Y . . . PINK1 65018 hgsc.bcm.edu 36 1 20849633 20849633 + Silent SNP C C T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_032409 exon8 c.C1608T p.A536A . . . KIAA1804 84451 hgsc.bcm.edu 36 1 231548883 231548883 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_032435 exon2 c.C878T p.A293V . . . LARGE 9215 hgsc.bcm.edu 36 22 32330485 32330485 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_133642 exon5 c.C551T p.T184M . . . TIPARP 25976 hgsc.bcm.edu 36 3 157896468 157896468 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_015508 exon4 c.C1207A p.P403T . . . SLITRK3 22865 hgsc.bcm.edu 36 3 166390496 166390496 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_014926 exon2 c.C817T p.R273X . . . ATP13A5 344905 hgsc.bcm.edu 36 3 194563763 194563763 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_198505 exon3 c.C340T p.R114C . . . BSN 8927 hgsc.bcm.edu 36 3 49637516 49637516 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_003458 exon2 c.G329A p.R110Q . . . ZNF518B 85460 hgsc.bcm.edu 36 4 10056426 10056426 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_053042 exon3 c.A625G p.T209A . . . DKK2 27123 hgsc.bcm.edu 36 4 108064651 108064651 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_014421 exon4 c.G689A p.R230H . . . HTR1A 3350 hgsc.bcm.edu 36 5 63292770 63292770 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_000524 exon1 c.C533A p.P178Q . . . PCDHB5 26167 hgsc.bcm.edu 36 5 140497449 140497449 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_015669 exon1 c.A2249G p.Y750C . . . SLC22A16 85413 hgsc.bcm.edu 36 6 110852802 110852802 + Silent SNP C C T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_033125 exon8 c.G1701A p.A567A . . . VARS2 57176 hgsc.bcm.edu 36 6 30994608 30994608 + Silent SNP A A C novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_001167733 exon10 c.A591C p.T197T . . . MOGAT3 346606 hgsc.bcm.edu 36 7 100626328 100626328 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_178176 exon6 c.C731A p.A244D . . . DKK4 27121 hgsc.bcm.edu 36 8 42352381 42352381 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_014420 exon2 c.G236C p.C79S . . . DENND4C 55667 hgsc.bcm.edu 36 9 19348055 19348055 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_017925 exon23 c.G4202T p.R1401L . . . DAPK1 1612 hgsc.bcm.edu 36 9 89442679 89442679 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_004938 exon4 c.G286A p.V96I . . . ODZ1 10178 hgsc.bcm.edu 36 X 123608253 123608253 + Silent SNP A A G novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 A A G G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_014253 exon9 c.T1668C p.P556P . . . SLITRK4 139065 hgsc.bcm.edu 36 X 142545782 142545782 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 A A G G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_173078 exon2 c.T809C p.F270S . . . ITGB1BP2 26548 hgsc.bcm.edu 36 X 70439088 70439088 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3582-01A-01W-0831-10 TCGA-AG-3582-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 184cc2b0-cce0-4731-a276-7174e9efe1bd 2aba7833-f326-43fe-a7e7-0f3c23aec2b1 NM_012278 exon4 c.G274C p.V92L . . .