Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ABCC2 1244 hgsc.bcm.edu 36 10 101557913 101557913 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_000392 exon13 c.C1752T p.T584T . . . SEC31B 25956 hgsc.bcm.edu 36 10 102259138 102259138 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_015490 exon4 c.G324A p.S108S . . . TACC2 10579 hgsc.bcm.edu 36 10 123944577 123944577 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_006997 exon2 c.C101T p.P34L . . . C10orf137 26098 hgsc.bcm.edu 36 10 127441868 127441868 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_015608 exon24 c.T3452A p.I1151N . . . EBF3 253738 hgsc.bcm.edu 36 10 131528581 131528581 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001005463 exon15 c.G1542C p.Q514H . . . SUV39H2 79723 hgsc.bcm.edu 36 10 14983199 14983199 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001193427 exon5 c.G338A p.R113Q . . . ZEB1 6935 hgsc.bcm.edu 36 10 31849586 31849586 + Silent SNP A A G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001174093 exon6 c.A1257G p.K419K . . . TLL2 7093 hgsc.bcm.edu 36 10 98123390 98123390 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_012465 exon19 c.C2615T p.S872L . . . GALNTL4 374378 hgsc.bcm.edu 36 11 11410793 11410793 + Silent SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_198516 exon3 c.C546T p.P182P . . . RERGL 79785 hgsc.bcm.edu 36 12 18133438 18133438 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_024730 exon2 c.T47C p.V16A . . . R3HDM2 22864 hgsc.bcm.edu 36 12 55949406 55949406 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_014925 exon14 c.G1639T p.G547C . . . WNK1 65125 hgsc.bcm.edu 36 12 864557 864557 + Silent SNP T T G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001184985 exon19 c.T5106G p.V1702V . . . EPYC 1833 hgsc.bcm.edu 36 12 89889767 89889767 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_004950 exon5 c.T643G p.F215V . . . USPL1 10208 hgsc.bcm.edu 36 13 30131051 30131051 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005800 exon9 c.T2837C p.I946T . . . NPAS3 64067 hgsc.bcm.edu 36 14 33339286 33339286 + Silent SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_022123 exon11 c.C1926A p.S642S . . . CYP46A1 10858 hgsc.bcm.edu 36 14 99235585 99235585 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_006668 exon4 c.G312T p.K104N . . . ATP10A 57194 hgsc.bcm.edu 36 15 23577280 23577280 + Silent SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_024490 exon2 c.G633T p.V211V . . . ANPEP 290 hgsc.bcm.edu 36 15 88148201 88148201 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001150 exon7 c.G1216A p.D406N . . . KRT15 3866 hgsc.bcm.edu 36 17 36928308 36928308 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_002275 exon1 c.C298G p.L100V . . . WNT3 7473 hgsc.bcm.edu 36 17 42201275 42201275 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_030753 exon4 c.G648A p.E216E . . . PRKCA 5578 hgsc.bcm.edu 36 17 61922800 61922800 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_002737 exon3 c.C225A p.H75Q . . . WBP2 23558 hgsc.bcm.edu 36 17 71359301 71359301 + Silent SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_012478 exon2 c.C111T p.N37N . . . TP53 7157 hgsc.bcm.edu 36 17 7517819 7517819 + Missense_Mutation SNP G G A rs28934574 unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001126114 exon8 c.C844T p.R282W TP53,central_nervous_system,brain,Substitution - Missense,-2 . . DNMT1 1786 hgsc.bcm.edu 36 19 10107814 10107814 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001130823 exon38 c.G4639C p.E1547Q . . . CALR 811 hgsc.bcm.edu 36 19 12915418 12915418 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_004343 exon8 c.G1028A p.G343D . . . HIPK4 147746 hgsc.bcm.edu 36 19 45587558 45587558 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_144685 exon1 c.G92A p.R31Q . . . HNRNPUL1 11100 hgsc.bcm.edu 36 19 46478935 46478935 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_144732 exon7 c.G614C p.G205A . . . SPAG17 200162 hgsc.bcm.edu 36 1 118332008 118332008 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_206996 exon40 c.C5641T p.R1881C . . . ITGA10 8515 hgsc.bcm.edu 36 1 144243836 144243836 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_003637 exon9 c.G932A p.R311Q . . . NBPF14 25832 hgsc.bcm.edu 36 1 146471340 146471340 + Silent SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_015383 exon22 c.G2598T p.P866P . . . PEAR1 375033 hgsc.bcm.edu 36 1 155143102 155143102 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001080471 exon6 c.C450G p.C150W . . . ADAMTS4 9507 hgsc.bcm.edu 36 1 159432027 159432027 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005099 exon4 c.T1113A p.H371Q . . . HMCN1 83872 hgsc.bcm.edu 36 1 184388549 184388549 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_031935 exon96 c.G14941A p.D4981N . . . KCNT2 343450 hgsc.bcm.edu 36 1 194551664 194551664 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_198503 exon21 c.A2464G p.N822D . . . ZBTB41 360023 hgsc.bcm.edu 36 1 195427602 195427602 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_194314 exon2 c.T1171A p.C391S . . . PTPRC 5788 hgsc.bcm.edu 36 1 196978026 196978026 + Silent SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_080921 exon22 c.C2115A p.A705A . . . DDX59 83479 hgsc.bcm.edu 36 1 198902080 198902080 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001031725 exon2 c.C412T p.Q138X . . . NFASC 23114 hgsc.bcm.edu 36 1 203210038 203210038 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001160331 exon11 c.G1421A p.R474Q . . . TMCC2 9911 hgsc.bcm.edu 36 1 203507751 203507751 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_014858 exon5 c.C2006T p.T669M . . . NBPF3 84224 hgsc.bcm.edu 36 1 21680843 21680843 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_032264 exon13 c.G1600A p.V534M . . . JMJD4 65094 hgsc.bcm.edu 36 1 225988995 225988995 + Silent SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_023007 exon2 c.C546T p.L182L . . . ERO1LB 56605 hgsc.bcm.edu 36 1 234483347 234483347 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_019891 exon3 c.G304A p.E102K . . . C1orf101 257044 hgsc.bcm.edu 36 1 242748607 242748607 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_173807 exon8 c.G520A p.E174K . . . PIK3CD 5293 hgsc.bcm.edu 36 1 9706707 9706707 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005026 exon21 c.C2688T p.S896S . . . C20orf185 359710 hgsc.bcm.edu 36 20 31111459 31111459 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_182658 exon4 c.G488A p.R163H . . . ZNF217 7764 hgsc.bcm.edu 36 20 51631699 51631699 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_006526 exon1 c.G1074A p.A358A . . . TIAM1 7074 hgsc.bcm.edu 36 21 31430200 31430200 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_003253 exon24 c.T3805A p.L1269M . . . TMEM182 130827 hgsc.bcm.edu 36 2 102797858 102797858 + Silent SNP A A G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_144632 exon5 c.A689G p.X230X . . . GALNT5 11227 hgsc.bcm.edu 36 2 157860512 157860512 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_014568 exon4 c.A1833T p.K611N . . . NT5C1B 93034 hgsc.bcm.edu 36 2 18631914 18631914 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001199104 exon3 c.C127T p.R43C . . . MYO1B 4430 hgsc.bcm.edu 36 2 191963287 191963287 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_012223 exon18 c.A1806T p.K602N . . . HECW2 57520 hgsc.bcm.edu 36 2 196879529 196879529 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_020760 exon13 c.G2742A p.T914T . . . VIL1 7429 hgsc.bcm.edu 36 2 218997298 218997298 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_007127 exon3 c.G130A p.D44N . . . ALK 238 hgsc.bcm.edu 36 2 29304014 29304014 + Silent SNP G G T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_004304 exon17 c.C2844A p.P948P . . . ALK 238 hgsc.bcm.edu 36 2 29373322 29373322 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_004304 exon9 c.G1753A p.A585T . . . CNGA3 1261 hgsc.bcm.edu 36 2 98379901 98379901 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001298 exon8 c.C1836T p.I612I . . . DLX2 1746 hgsc.bcm.edu 36 2 172675493 172675493 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_004405 exon1 c.G20A p.S7N . . . DNAJC13 23317 hgsc.bcm.edu 36 3 133667879 133667879 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_015268 exon19 c.A2015C p.E672A . . . SPATA12 353324 hgsc.bcm.edu 36 3 57083278 57083278 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_181727 exon2 c.C516T p.C172C . . . CNTN3 5067 hgsc.bcm.edu 36 3 74433586 74433586 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_020872 exon14 c.T1847G p.L616R . . . EPHA3 2042 hgsc.bcm.edu 36 3 89472868 89472868 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005233 exon4 c.T927A p.N309K . . . TLL1 7092 hgsc.bcm.edu 36 4 167215565 167215565 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_012464 exon17 c.T2274A p.N758K . . . GABRG1 2565 hgsc.bcm.edu 36 4 45755379 45755379 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_173536 exon6 c.G643A p.E215K . . . APC 324 hgsc.bcm.edu 36 5 112203289 112203289 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001127511 exon14 c.C4045T p.Q1349X APC,large_intestine,colon,Substitution - Nonsense,0 . . SLC23A1 9963 hgsc.bcm.edu 36 5 138742233 138742233 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005847 exon10 c.G1113A p.G371G . . . PCDHB1 29930 hgsc.bcm.edu 36 5 140411443 140411443 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_013340 exon1 c.C204T p.S68S . . . PCDHGA2 56113 hgsc.bcm.edu 36 5 140699885 140699885 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_032009 exon1 c.A1163G p.E388G . . . PCDH12 51294 hgsc.bcm.edu 36 5 141315541 141315541 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_016580 exon1 c.C2060T p.T687I . . . APC 324 hgsc.bcm.edu 36 5 112202739 112202739 + Nonsense_Mutation SNP T T A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001127511 exon14 c.T3495A p.Y1165X . . . REV3L 5980 hgsc.bcm.edu 36 6 111784925 111784925 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_002912 exon18 c.C7169G p.A2390G . . . LAMA2 3908 hgsc.bcm.edu 36 6 129633548 129633548 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001079823 exon17 c.C2409T p.D803D . . . TNFAIP3 7128 hgsc.bcm.edu 36 6 138242038 138242038 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_006290 exon7 c.C1763G p.A588G . . . TRIM27 5987 hgsc.bcm.edu 36 6 28984817 28984817 + Silent SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_006510 exon5 c.T798A p.P266P . . . UBE2CBP 90025 hgsc.bcm.edu 36 6 83820607 83820607 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_198920 exon3 c.G344C p.G115A . . . RELN 5649 hgsc.bcm.edu 36 7 102989562 102989562 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005045 exon35 c.T5285C p.V1762A . . . EPHA1 2041 hgsc.bcm.edu 36 7 142805642 142805642 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005232 exon7 c.T1358A p.L453Q . . . EPHA1 2041 hgsc.bcm.edu 36 7 142805647 142805647 + Silent SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005232 exon7 c.G1353C p.L451L . . . ABCF2 10061 hgsc.bcm.edu 36 7 150552074 150552074 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_005692 exon4 c.G427A p.D143N . . . HNRNPA2B1 3181 hgsc.bcm.edu 36 7 26202562 26202562 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_031243 exon7 c.C678A p.N226K . . . C7orf43 55262 hgsc.bcm.edu 36 7 99590633 99590633 + Silent SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_018275 exon11 c.G1680T p.V560V . . . CSMD3 114788 hgsc.bcm.edu 36 8 113400294 113400294 + Silent SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_198123 exon47 c.G7308C p.T2436T . . . ESCO2 157570 hgsc.bcm.edu 36 8 27702382 27702382 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001017420 exon7 c.C1231T p.H411Y . . . ADAM18 8749 hgsc.bcm.edu 36 8 39683526 39683526 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_014237 exon18 c.T1963A p.F655I . . . SLC20A2 6575 hgsc.bcm.edu 36 8 42405517 42405517 + Silent SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_006749 exon10 c.C1710T p.S570S . . . DPY19L4 286148 hgsc.bcm.edu 36 8 95816119 95816119 + Silent SNP A A G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_181787 exon3 c.A213G p.S71S . . . KCNS2 3788 hgsc.bcm.edu 36 8 99510167 99510167 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_020697 exon2 c.C784A p.L262I . . . FAM125B 89853 hgsc.bcm.edu 36 9 128194215 128194215 + Silent SNP G G A novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001011703 exon5 c.G459A p.R153R . . . GUCY2F 2986 hgsc.bcm.edu 36 X 108578045 108578045 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_001522 exon6 c.G1478A p.R493H . . . HTATSF1 27336 hgsc.bcm.edu 36 X 135407599 135407599 + Silent SNP C C T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_014500 exon1 c.C90T p.T30T . . . MAGEA10 4109 hgsc.bcm.edu 36 X 151053966 151053966 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_021048 exon4 c.C783G p.H261Q . . . POLA1 5422 hgsc.bcm.edu 36 X 24661848 24661848 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_016937 exon17 c.G1809T p.E603D . . . MAOA 4128 hgsc.bcm.edu 36 X 43486221 43486221 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3609-01A-02W-0833-10 TCGA-AG-3609-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 94da44f7-c745-4bfb-bf4d-4bf7d316b6a3 0ce8f81d-3acd-42b8-9188-e42cf9897f47 NM_000240 exon12 c.C1245G p.I415M . . .