Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID PLXDC2 84898 hgsc.bcm.edu 36 10 20608641 20608641 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ARHGAP21 57584 hgsc.bcm.edu 36 10 24949800 24949800 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PHYHIPL 84457 hgsc.bcm.edu 36 10 60674861 60674861 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PTEN 5728 hgsc.bcm.edu 36 10 89675261 89675261 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CH25H 9023 hgsc.bcm.edu 36 10 90956619 90956619 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 AGL 178 hgsc.bcm.edu 36 1 100115827 100115827 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CASP5 838 hgsc.bcm.edu 36 11 104374842 104374842 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ATM 472 hgsc.bcm.edu 36 11 107675689 107675689 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ATM 472 hgsc.bcm.edu 36 11 107691967 107691967 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KCNA2 3737 hgsc.bcm.edu 36 1 110947820 110947820 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 UPK2 7379 hgsc.bcm.edu 36 11 118332341 118332341 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NTM 50863 hgsc.bcm.edu 36 11 131521545 131521545 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLC16A1 6566 hgsc.bcm.edu 36 1 113261568 113261568 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LMO2 4005 hgsc.bcm.edu 36 11 33837657 33837657 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PLEKHO1 51177 hgsc.bcm.edu 36 1 148398096 148398096 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LCE3A 353142 hgsc.bcm.edu 36 1 150862071 150862071 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SPRR3 6707 hgsc.bcm.edu 36 1 151242167 151242167 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LELP1 149018 hgsc.bcm.edu 36 1 151443963 151443963 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NES 10763 hgsc.bcm.edu 36 1 154906932 154906932 + Silent SNP C C T rs3748571 byCluster;byFrequency TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 OR5D16 390144 hgsc.bcm.edu 36 11 55363217 55363217 + Silent SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SPTA1 6708 hgsc.bcm.edu 36 1 156849320 156849320 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SMPD1 6609 hgsc.bcm.edu 36 11 6368511 6368511 + Missense_Mutation SNP T T C rs1050228 byCluster;byFrequency TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLC25A45 283130 hgsc.bcm.edu 36 11 64903958 64903958 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CPT1A 1374 hgsc.bcm.edu 36 11 68323332 68323332 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PADI1 29943 hgsc.bcm.edu 36 1 17427794 17427794 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 USP35 57558 hgsc.bcm.edu 36 11 77598503 77598503 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLC36A4 120103 hgsc.bcm.edu 36 11 92535639 92535639 + Silent SNP C C T rs34525400 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 AKR7A2 8574 hgsc.bcm.edu 36 1 19506118 19506118 + Silent SNP G G A rs2231202 byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 C12orf52 84934 hgsc.bcm.edu 36 12 112113928 112113928 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 WDR66 144406 hgsc.bcm.edu 36 12 120843775 120843775 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DCP1B 196513 hgsc.bcm.edu 36 12 1932614 1932614 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KRAS 3845 hgsc.bcm.edu 36 12 25269914 25269914 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ACTN2 88 hgsc.bcm.edu 36 1 234990947 234990947 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 RYR2 6262 hgsc.bcm.edu 36 1 235733295 235733295 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 WDR64 128025 hgsc.bcm.edu 36 1 239953239 239953239 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KRT4 3851 hgsc.bcm.edu 36 12 51493870 51493870 + Silent SNP A A G rs7135148 by2Hit2Allele;byCluster;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KRT4 3851 hgsc.bcm.edu 36 12 51493873 51493873 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PAFAH2 5051 hgsc.bcm.edu 36 1 26175816 26175816 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NALCN 259232 hgsc.bcm.edu 36 13 100515773 100515773 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SPOCD1 90853 hgsc.bcm.edu 36 1 32034875 32034875 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PARP4 143 hgsc.bcm.edu 36 13 23950321 23950321 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MTIF3 219402 hgsc.bcm.edu 36 13 26907776 26907776 + Splice_Site SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ELF1 84337 hgsc.bcm.edu 36 13 40413327 40413327 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 C1orf94 84970 hgsc.bcm.edu 36 1 34439114 34439114 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ALG11 440138 hgsc.bcm.edu 36 13 51484598 51484598 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CLSPN 63967 hgsc.bcm.edu 36 1 35986189 35986189 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COMMD6 170622 hgsc.bcm.edu 36 13 75009933 75009933 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MACF1 23499 hgsc.bcm.edu 36 1 39685773 39685773 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 HPCAL4 51440 hgsc.bcm.edu 36 1 39922229 39922229 + Silent SNP G G T rs784634 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 RTL1 388015 hgsc.bcm.edu 36 14 100420225 100420225 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLFNL1 200172 hgsc.bcm.edu 36 1 41254432 41254432 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DLGAP5 9787 hgsc.bcm.edu 36 14 54705932 54705932 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 C14orf50 145376 hgsc.bcm.edu 36 14 64124712 64124712 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SRSF5 0 hgsc.bcm.edu 36 14 69304676 69304676 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MGA 23269 hgsc.bcm.edu 36 15 39829067 39829067 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NARG2 79664 hgsc.bcm.edu 36 15 58507944 58507944 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 IGDCC3 9543 hgsc.bcm.edu 36 15 63410976 63410976 + Nonsense_Mutation SNP G G T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NR2E3 10002 hgsc.bcm.edu 36 15 69892983 69892983 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CRABP1 1381 hgsc.bcm.edu 36 15 76427332 76427332 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TMED3 23423 hgsc.bcm.edu 36 15 77401451 77401451 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MEF2A 4205 hgsc.bcm.edu 36 15 98070261 98070261 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CLEC16A 23274 hgsc.bcm.edu 36 16 11122100 11122100 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COG7 91949 hgsc.bcm.edu 36 16 23343576 23343576 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ITGAL 3683 hgsc.bcm.edu 36 16 30415014 30415014 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 BCKDK 10295 hgsc.bcm.edu 36 16 31029294 31029294 + Silent SNP G G A rs14235 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MMP2 4313 hgsc.bcm.edu 36 16 54096802 54096802 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CES5A 0 hgsc.bcm.edu 36 16 54447818 54447818 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DPEP2 64174 hgsc.bcm.edu 36 16 66579279 66579279 + Silent SNP G G T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 HYDIN 54768 hgsc.bcm.edu 36 16 69399411 69399411 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KIAA0174 9798 hgsc.bcm.edu 36 16 70514018 70514018 + Silent SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ADAMTS18 170692 hgsc.bcm.edu 36 16 75891731 75891731 + Silent SNP T T G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CDH13 1012 hgsc.bcm.edu 36 16 82269407 82269407 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 INPP5K 51763 hgsc.bcm.edu 36 17 1363557 1363557 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LLGL1 3996 hgsc.bcm.edu 36 17 18077866 18077866 + Missense_Mutation SNP A A G rs2290505 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KCNJ12 3768 hgsc.bcm.edu 36 17 21260360 21260360 + Silent SNP C C T rs1612176 by2Hit2Allele;byCluster;byFrequency TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KLHL11 55175 hgsc.bcm.edu 36 17 37264670 37264670 + Silent SNP T T G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MYST2 11143 hgsc.bcm.edu 36 17 45224353 45224353 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MED13 9969 hgsc.bcm.edu 36 17 57415089 57415089 + Silent SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PRKCA 5578 hgsc.bcm.edu 36 17 62230493 62230493 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SDK2 54549 hgsc.bcm.edu 36 17 68894253 68894253 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ITGB4 3691 hgsc.bcm.edu 36 17 71258723 71258723 + Silent SNP G G A rs61735289 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TP53 7157 hgsc.bcm.edu 36 17 7517805 7517805 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TP53 7157 hgsc.bcm.edu 36 17 7517878 7517878 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TP53 7157 hgsc.bcm.edu 36 17 7518296 7518296 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TP53 7157 hgsc.bcm.edu 36 17 7518299 7518299 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 AK5 26289 hgsc.bcm.edu 36 1 77525380 77525380 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COL24A1 255631 hgsc.bcm.edu 36 1 86024691 86024691 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ATP9B 374868 hgsc.bcm.edu 36 18 75164642 75164642 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MRPL4 51073 hgsc.bcm.edu 36 19 10224280 10224280 + Missense_Mutation SNP C C T rs45520838 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FDX1L 112812 hgsc.bcm.edu 36 19 10282229 10282229 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ACP5 54 hgsc.bcm.edu 36 19 11548604 11548604 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MOBKL2A 126308 hgsc.bcm.edu 36 19 2029488 2029488 + Silent SNP T T C rs2074894 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ZNF43 7594 hgsc.bcm.edu 36 19 21783947 21783947 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ZNF43 7594 hgsc.bcm.edu 36 19 21783948 21783948 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FCGBP 8857 hgsc.bcm.edu 36 19 45111927 45111927 + Silent SNP G G A rs12460562 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CYP2S1 29785 hgsc.bcm.edu 36 19 46401222 46401222 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 HAS1 3036 hgsc.bcm.edu 36 19 56909150 56909150 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ZNF329 79673 hgsc.bcm.edu 36 19 63331165 63331165 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CST9 128822 hgsc.bcm.edu 36 20 23534266 23534266 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TP53INP2 58476 hgsc.bcm.edu 36 20 32760317 32760317 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PHF20 51230 hgsc.bcm.edu 36 20 33923076 33923076 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 HNF4A 3172 hgsc.bcm.edu 36 20 42468143 42468143 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GCFC1 0 hgsc.bcm.edu 36 21 33042874 33042874 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CBS 875 hgsc.bcm.edu 36 21 43352042 43352042 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KRTAP10-10 353333 hgsc.bcm.edu 36 21 44882021 44882021 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COL6A1 1291 hgsc.bcm.edu 36 21 46242767 46242767 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SCN7A 6332 hgsc.bcm.edu 36 2 167039070 167039070 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 XIRP2 129446 hgsc.bcm.edu 36 2 167468552 167468552 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TTN 7273 hgsc.bcm.edu 36 2 179180227 179180227 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ANKRD44 91526 hgsc.bcm.edu 36 2 197698381 197698381 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CLK1 78989 hgsc.bcm.edu 36 2 201437134 201437134 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NRP2 8828 hgsc.bcm.edu 36 2 206316395 206316395 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NEFH 4744 hgsc.bcm.edu 36 22 28215564 28215564 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NEFH 4744 hgsc.bcm.edu 36 22 28215567 28215567 + Silent SNP A A C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COL6A3 1293 hgsc.bcm.edu 36 2 237917887 237917887 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PRR21 643905 hgsc.bcm.edu 36 2 240630137 240630137 + Silent SNP C C G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SMEK2 57223 hgsc.bcm.edu 36 2 55684627 55684627 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 AAK1 22848 hgsc.bcm.edu 36 2 69595260 69595260 + Silent SNP T T C rs55712143 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TCF7L1 83439 hgsc.bcm.edu 36 2 85383213 85383213 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COL6A5 256076 hgsc.bcm.edu 36 3 131578025 131578025 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 COL6A6 131873 hgsc.bcm.edu 36 3 131801318 131801318 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LRRC15 131578 hgsc.bcm.edu 36 3 195562311 195562311 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLC22A13 9390 hgsc.bcm.edu 36 3 38282451 38282451 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DNAH1 25981 hgsc.bcm.edu 36 3 52405566 52405566 + Missense_Mutation SNP G G A rs12163565 byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CHDH 55349 hgsc.bcm.edu 36 3 53829574 53829574 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ANK2 287 hgsc.bcm.edu 36 4 114339674 114339674 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FBXW7 55294 hgsc.bcm.edu 36 4 153466739 153466739 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GUCY1A3 2982 hgsc.bcm.edu 36 4 156853904 156853904 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NEK1 4750 hgsc.bcm.edu 36 4 170582345 170582345 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ODZ3 55714 hgsc.bcm.edu 36 4 183831196 183831196 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ODZ3 55714 hgsc.bcm.edu 36 4 183933120 183933120 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLIT2 9353 hgsc.bcm.edu 36 4 20121232 20121232 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GABRA4 2557 hgsc.bcm.edu 36 4 46625118 46625118 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DSPP 1834 hgsc.bcm.edu 36 4 88755043 88755043 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DSPP 1834 hgsc.bcm.edu 36 4 88756381 88756381 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MEPE 56955 hgsc.bcm.edu 36 4 88985415 88985415 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203309 112203309 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203373 112203373 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203374 112203374 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203581 112203581 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203629 112203629 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203843 112203843 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SLC4A9 83697 hgsc.bcm.edu 36 5 139727534 139727534 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PCYOX1L 78991 hgsc.bcm.edu 36 5 148723835 148723835 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PPARGC1B 133522 hgsc.bcm.edu 36 5 149196816 149196816 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CCNJL 79616 hgsc.bcm.edu 36 5 159613128 159613128 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GABRA1 2554 hgsc.bcm.edu 36 5 161232726 161232726 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LCP2 3937 hgsc.bcm.edu 36 5 169630436 169630436 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FGFR4 2264 hgsc.bcm.edu 36 5 176452849 176452849 + Missense_Mutation SNP G G A rs351855 byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 UGT3A2 167127 hgsc.bcm.edu 36 5 36084927 36084927 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GZMA 3001 hgsc.bcm.edu 36 5 54439909 54439909 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PDE4D 5144 hgsc.bcm.edu 36 5 58306406 58306406 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LRRC70 100130733 hgsc.bcm.edu 36 5 61912202 61912202 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CMYA5 202333 hgsc.bcm.edu 36 5 79067233 79067233 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PCSK1 5122 hgsc.bcm.edu 36 5 95754763 95754763 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PREP 5550 hgsc.bcm.edu 36 6 105843440 105843440 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MCM9 254394 hgsc.bcm.edu 36 6 119294488 119294488 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 C6orf170 221322 hgsc.bcm.edu 36 6 121667257 121667257 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PDE7B 27115 hgsc.bcm.edu 36 6 136471640 136471640 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MYLIP 29116 hgsc.bcm.edu 36 6 16253452 16253452 + Silent SNP C C T rs1060901 byCluster;byFrequency TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 HLA-A 3105 hgsc.bcm.edu 36 6 30018738 30018738 + Missense_Mutation SNP T T A rs1071742 byCluster;byFrequency TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MUC21 394263 hgsc.bcm.edu 36 6 31062470 31062470 + Missense_Mutation SNP C C T rs34126344 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LY6G6D 259215 hgsc.bcm.edu 36 6 31793432 31793432 + Missense_Mutation SNP G G T rs60559550 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 LY6G6D 259215 hgsc.bcm.edu 36 6 31793434 31793434 + Silent SNP C C A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MAPK13 5603 hgsc.bcm.edu 36 6 36214470 36214470 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GLP1R 2740 hgsc.bcm.edu 36 6 39142004 39142004 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 POLH 10721 hgsc.bcm.edu 36 6 43658078 43658078 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FARS2 10667 hgsc.bcm.edu 36 6 5716572 5716572 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TMEM168 64418 hgsc.bcm.edu 36 7 112211378 112211378 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MKLN1 4289 hgsc.bcm.edu 36 7 130806183 130806183 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 BRAF 673 hgsc.bcm.edu 36 7 140099639 140099639 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 GIMAP1-GIMAP5 0 hgsc.bcm.edu 36 7 150070324 150070324 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MEOX2 4223 hgsc.bcm.edu 36 7 15692322 15692322 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SNX13 23161 hgsc.bcm.edu 36 7 17821090 17821090 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SP4 6671 hgsc.bcm.edu 36 7 21436595 21436595 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DNAH11 8701 hgsc.bcm.edu 36 7 21704295 21704295 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DDC 1644 hgsc.bcm.edu 36 7 50573064 50573064 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TNRC18 84629 hgsc.bcm.edu 36 7 5330454 5330454 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 C7orf26 79034 hgsc.bcm.edu 36 7 6600631 6600631 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ZNF853 54753 hgsc.bcm.edu 36 7 6623355 6623355 + Missense_Mutation SNP G G A rs2243563 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 POM121 22932 hgsc.bcm.edu 36 7 72051379 72051379 + Missense_Mutation SNP G G A rs62463429 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TMEM130 222865 hgsc.bcm.edu 36 7 98298852 98298852 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KPNA7 402569 hgsc.bcm.edu 36 7 98613479 98613479 + Silent SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DLC1 10395 hgsc.bcm.edu 36 8 13401241 13401241 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CLVS1 0 hgsc.bcm.edu 36 8 62375167 62375167 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TRPA1 8989 hgsc.bcm.edu 36 8 73097890 73097890 + Silent SNP A A G novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CYLC2 1539 hgsc.bcm.edu 36 9 104807235 104807235 + Silent SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MPDZ 84708 hgsc.bcm.edu 36 9 13182158 13182158 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SURF6 6838 hgsc.bcm.edu 36 9 135189287 135189287 + Missense_Mutation SNP G G A rs886089 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SNAPC3 6619 hgsc.bcm.edu 36 9 15412893 15412893 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 C9orf93 203238 hgsc.bcm.edu 36 9 15838930 15838930 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 CDKN2A 1029 hgsc.bcm.edu 36 9 21964593 21964593 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 HSD17B3 3293 hgsc.bcm.edu 36 9 98104198 98104198 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ALG13 79868 hgsc.bcm.edu 36 X 110874655 110874655 + Silent SNP T T A rs13440710 by2Hit2Allele TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 AMELX 265 hgsc.bcm.edu 36 X 11226899 11226899 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 NKRF 55922 hgsc.bcm.edu 36 X 118608883 118608883 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 BGN 633 hgsc.bcm.edu 36 X 152424703 152424703 + Silent SNP C C T rs1126499 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 RS1 6248 hgsc.bcm.edu 36 X 18584736 18584736 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 EIF2S3 1968 hgsc.bcm.edu 36 X 23992329 23992329 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FAM47B 170062 hgsc.bcm.edu 36 X 34871503 34871503 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 FAM47C 442444 hgsc.bcm.edu 36 X 36938696 36938696 + Silent SNP G G A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ZNF669 79862 hgsc.bcm.edu 36 1 245330716 245330717 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 CC CC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 MGAT4A 11320 hgsc.bcm.edu 36 2 98709169 98709169 + Frame_Shift_Del DEL G G - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SPATA3 130560 hgsc.bcm.edu 36 2 231569277 231569303 + In_Frame_Del DEL CAGCAGCCTAGCCCTGAATCCACACCA CAGCAGCCTAGCCCTGAATCCACACCA - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 CAGCAGCCTAGCCCTGAATCCACACCA CAGCAGCCTAGCCCTGAATCCACACCA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112202265 112202265 + Frame_Shift_Del DEL A A - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 APC 324 hgsc.bcm.edu 36 5 112203374 112203375 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 PCDH12 51294 hgsc.bcm.edu 36 5 141315807 141315808 + Frame_Shift_Ins INS - - A novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SH2D4A 63898 hgsc.bcm.edu 36 8 19234743 19234748 + Frame_Shift_Del DEL CAGAGA CAGAGA - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 CAGAGA CAGAGA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 DNA2 1763 hgsc.bcm.edu 36 10 69852527 69852527 + Frame_Shift_Del DEL A A - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 KRT3 3850 hgsc.bcm.edu 36 12 51471266 51471267 + Frame_Shift_Ins INS - - CGCC novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TRPV1 7442 hgsc.bcm.edu 36 17 3423919 3423920 + Frame_Shift_Ins INS - - G rs56355372 unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 SMAD4 4089 hgsc.bcm.edu 36 18 46845809 46845810 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 CC CC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 ZNF83 55769 hgsc.bcm.edu 36 19 57808746 57808829 + In_Frame_Del DEL CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT CCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 TOX2 84969 hgsc.bcm.edu 36 20 42127972 42127973 + In_Frame_Ins INS - - CCG novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94 URB1 9875 hgsc.bcm.edu 36 21 32666767 32666780 + Frame_Shift_Del DEL AACAAGCTCCCGCA AACAAGCTCCCGCA - novel unknown TCGA-AG-3885-01A-01W-0899-10 TCGA-AG-3885-10A-01W-0901-10 AACAAGCTCCCGCA AACAAGCTCCCGCA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 7a748a19-12e6-43b6-8389-97945d7be392 466f3612-0dc1-4e8e-a7e8-0f18e6f74b94