Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
COL13A1	1305	broad.mit.edu	36	10	71310274	71310274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080802	exon6	c.G445A	p.G149R	.	.	.
MCAM	4162	broad.mit.edu	36	11	118688279	118688279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006500	exon8	c.C931T	p.R311W	.	.	.
OR10G7	390265	broad.mit.edu	36	11	123414095	123414095	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004463	exon1	c.A824G	p.Y275C	.	.	.
ROBO3	64221	broad.mit.edu	36	11	124246163	124246163	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022370	exon7	c.T1077A	p.A359A	.	.	.
PRG3	10394	broad.mit.edu	36	11	56902835	56902835	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006093	exon4	c.C402A	p.G134G	.	.	.
PACS1	55690	broad.mit.edu	36	11	65740569	65740569	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018026	exon6	c.C808T	p.R270C	.	.	.
TXNRD1	7296	broad.mit.edu	36	12	103169575	103169575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001093771	exon2	c.C232T	p.R78C	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124705206	124705206	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052907	exon9	c.G3234T	p.M1078I	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
PTHLH	5744	broad.mit.edu	36	12	28007965	28007965	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002820	exon4	c.G107C	p.R36T	.	.	.
NDUFA9	4704	broad.mit.edu	36	12	4642035	4642035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005002	exon6	c.G628A	p.E210K	.	.	.
HOXC9	3225	broad.mit.edu	36	12	52680461	52680461	+	Silent	SNP	C	T	T	rs34136736	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006897	exon1	c.C222T	p.S74S	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109643217	109643217	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001845	exon23	c.C1426T	p.R476W	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95351121	95351121	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon22	c.T2575C	p.F859L	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31632295	31632295	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001030055	exon2	c.A2669T	p.D890V	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32271459	32271459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004274	exon10	c.C3049T	p.L1017F	.	.	.
POLE2	5427	broad.mit.edu	36	14	49190531	49190531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001197330	exon14	c.C1060T	p.P354S	.	.	.
L2HGDH	79944	broad.mit.edu	36	14	49804307	49804307	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024884	exon8	c.G978A	p.G326G	.	.	.
SGPP1	81537	broad.mit.edu	36	14	63222863	63222863	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030791	exon3	c.C1039G	p.L347V	.	.	.
POTEB	339010	broad.mit.edu	36	15	19335894	19335894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207355	exon1	c.G407A	p.R136H	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23513002	23513002	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024490	exon9	c.G1744T	p.V582F	.	.	.
HDC	3067	broad.mit.edu	36	15	48334149	48334149	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002112	exon5	c.C446T	p.T149M	.	.	.
BCL2A1	597	broad.mit.edu	36	15	78050159	78050159	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004049	exon1	c.T358C	p.Y120H	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	79016077	79016077	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018689	exon23	c.T3017C	p.I1006T	.	.	.
SALL1	6299	broad.mit.edu	36	16	49732229	49732229	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002968	exon2	c.C1405T	p.R469C	.	.	.
CES1	1066	broad.mit.edu	36	16	54415079	54415079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001266	exon4	c.C420T	p.H140H	.	.	.
VTN	7448	broad.mit.edu	36	17	23718567	23718567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000638	exon8	c.C1387T	p.R463C	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3441067	3441067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018727	exon4	c.C544T	p.R182W	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46858786	46858786	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon12	c.A1610T	p.D537V	 SMAD4,large_intestine,NS,Substitution - Missense,+1 	.	.
CILP2	148113	broad.mit.edu	36	19	19516854	19516854	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153221	exon8	c.G2500A	p.V834I	.	.	.
CHST8	64377	broad.mit.edu	36	19	38872033	38872033	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127895	exon3	c.G26A	p.R9Q	.	.	.
GPI	2821	broad.mit.edu	36	19	39549571	39549571	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000175	exon3	c.A257G	p.N86S	.	.	.
RYR1	6261	broad.mit.edu	36	19	43681709	43681709	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042723	exon43	c.C7013A	p.A2338D	.	.	.
SAE1	10055	broad.mit.edu	36	19	52347997	52347997	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005500	exon4	c.G387T	p.V129V	.	.	.
ELL	8178	broad.mit.edu	36	19	18437618	18437618	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006532	exon3	c.294delG	p.Q98fs	.	.	.
DENND2D	79961	broad.mit.edu	36	1	111540063	111540063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024901	exon6	c.G643A	p.E215K	.	.	.
SYT6	148281	broad.mit.edu	36	1	114483795	114483795	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205848	exon2	c.G222T	p.L74L	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246290713	246290713	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004687	exon1	c.T107C	p.M36T	.	.	.
PAX1	5075	broad.mit.edu	36	20	21635619	21635619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006192	exon2	c.C830T	p.A277V	.	.	.
JPH2	57158	broad.mit.edu	36	20	42221701	42221701	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020433	exon2	c.G1140A	p.A380A	.	.	.
RBX1	9978	broad.mit.edu	36	22	39693777	39693777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014248	exon4	c.G257A	p.R86H	.	.	.
IL1RN	3557	broad.mit.edu	36	2	113606750	113606750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000577	exon5	c.G311A	p.R104H	.	.	.
ARHGAP15	55843	broad.mit.edu	36	2	143911061	143911061	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018460	exon8	c.C683A	p.P228Q	.	.	.
FAP	2191	broad.mit.edu	36	2	162763613	162763613	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004460	exon16	c.A1302T	p.P434P	.	.	.
FIGN	55137	broad.mit.edu	36	2	164175770	164175770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018086	exon3	c.C818T	p.A273V	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166607114	166607114	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001165964	exon12	c.C2026A	p.L676I	.	.	.
TTN	7273	broad.mit.edu	36	2	179128105	179128105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon159	c.C61131T	p.C20377C	.	.	.
PRKD3	23683	broad.mit.edu	36	2	37341030	37341030	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005813	exon14	c.A1886G	p.N629S	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180410920	180410920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon9	c.C1412T	p.P471L	.	.	.
RNF168	165918	broad.mit.edu	36	3	197683465	197683465	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152617	exon6	c.C1338G	p.D446E	.	.	.
IL17RC	84818	broad.mit.edu	36	3	9947097	9947097	+	De_novo_Start_OutOfFrame	SNP	T	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032732	exon14	c.T1247A	p.L416H	.	.	.
FAT4	79633	broad.mit.edu	36	4	126622206	126622207	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon15	c.12679_12680insA	p.Y4227_L4228delinsX	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155376047	155376047	+	Silent	SNP	C	T	T	rs61741036	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017639	exon25	c.G7842A	p.P2614P	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72651631	72651631	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134742	exon24	c.A3146C	p.K1049T	.	.	.
APC	324	broad.mit.edu	36	5	112202968	112202968	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C3724T	p.Q1242X	.	.	.
ZNF608	57507	broad.mit.edu	36	5	124008013	124008013	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020747	exon5	c.C3946T	p.R1316X	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606006	140606006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018935	exon1	c.G676A	p.V226I	.	.	.
CLK4	57396	broad.mit.edu	36	5	177963326	177963326	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020666	exon13	c.G1344T	p.L448L	.	.	.
ESM1	11082	broad.mit.edu	36	5	54313584	54313584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007036	exon2	c.C449T	p.T150M	.	.	.
APC	324	broad.mit.edu	36	5	112203116	112203117	+	Frame_Shift_Del	DEL	AA	-	-	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3872_3873del	p.1291_1291del	 APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,+1 	.	.
SOBP	55084	broad.mit.edu	36	6	108061593	108061593	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018013	exon6	c.A852G	p.E284E	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152749984	152749984	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033071	exon54	c.C8424T	p.Y2808Y	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17872857	17872857	+	Silent	SNP	C	T	T	rs56327112	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022113	exon39	c.G4881A	p.T1627T	.	.	.
PNPLA1	285848	broad.mit.edu	36	6	36367246	36367246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145717	exon2	c.G377A	p.R126H	.	.	.
FIS1	51024	broad.mit.edu	36	7	100670837	100670837	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016068	exon3	c.G249T	p.R83R	.	.	.
C7orf29	113763	broad.mit.edu	36	7	149658541	149658541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138434	exon1	c.G115A	p.V39I	.	.	.
MAD1L1	8379	broad.mit.edu	36	7	2231617	2231617	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013836	exon4	c.G245C	p.R82P	.	.	.
SCARA5	286133	broad.mit.edu	36	8	27835457	27835458	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173833	exon4	c.466_467insG	p.L156fs	.	.	.
ANGPT1	284	broad.mit.edu	36	8	108578789	108578789	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146	exon1	c.G174T	p.T58T	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52421027	52421027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144651	exon20	c.C3935T	p.T1312M	.	.	.
LAPTM4B	55353	broad.mit.edu	36	8	98932857	98932857	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018407	exon7	c.G933A	p.P311P	.	.	.
ACO1	48	broad.mit.edu	36	9	32397368	32397368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002197	exon3	c.G207A	p.T69T	.	.	.
GRHPR	9380	broad.mit.edu	36	9	37422009	37422009	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012203	exon8	c.G739T	p.D247Y	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104898189	104898189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017416	exon11	c.C1940T	p.T647M	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12644688	12644688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014728	exon15	c.G2189A	p.G730E	.	.	.
SLC6A8	6535	broad.mit.edu	36	X	152612011	152612011	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005629	exon6	c.T1012C	p.Y338H	.	.	.
PLXNA3	55558	broad.mit.edu	36	X	153347967	153347967	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3887-01A-01W-1073-09	TCGA-AG-3887-10A-01W-1073-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017514	exon16	c.C2854T	p.R952W	.	.	.