Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target HPSE2 60495 broad.mit.edu 36 10 100232516 100232516 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166246 exon11 c.C1480T p.R494C . . . ABCC2 1244 broad.mit.edu 36 10 101581527 101581527 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon22 c.C3053A p.S1018Y . . . PPRC1 23082 broad.mit.edu 36 10 103889305 103889305 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015062 exon5 c.G1050A p.G350G . . . C10orf79 80217 broad.mit.edu 36 10 105893280 105893280 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025145 exon32 c.C4052A p.A1351D . . . C10orf79 80217 broad.mit.edu 36 10 105910825 105910825 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025145 exon27 c.A3500G p.K1167R . . . CCDC147 159686 broad.mit.edu 36 10 106108298 106108298 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008723 exon2 c.G219T p.V73V . . . SORCS3 22986 broad.mit.edu 36 10 106897512 106897512 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014978 exon9 c.C1450A p.L484I . . . SMC3 9126 broad.mit.edu 36 10 112333962 112333962 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005445 exon13 c.C1123A p.L375I . . . NRAP 4892 broad.mit.edu 36 10 115396686 115396686 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198060 exon10 c.G979A p.E327K . . . DCLRE1A 9937 broad.mit.edu 36 10 115599278 115599278 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014881 exon2 c.T1576G p.L526V . . . GFRA1 2674 broad.mit.edu 36 10 117813993 117813993 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145453 exon10 c.C1289A p.S430X . . . PNLIPRP3 119548 broad.mit.edu 36 10 118215636 118215636 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011709 exon8 c.C893A p.A298D . . . UPF2 26019 broad.mit.edu 36 10 12117258 12117258 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080599 exon2 c.G171T p.K57N . . . TIAL1 7073 broad.mit.edu 36 10 121331973 121331973 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033925 exon3 c.A267C p.K89N . . . WDR11 55717 broad.mit.edu 36 10 122639465 122639465 + Nonsense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018117 exon18 c.T2297G p.L766X . . . FGFR2 2263 broad.mit.edu 36 10 123300810 123300810 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144916 exon2 c.G263A p.R88H FGFR2,breast,NS,Substitution - Missense,-1 . . ATE1 11101 broad.mit.edu 36 10 123660614 123660614 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001976 exon5 c.A380C p.D127A . . . CUZD1 50624 broad.mit.edu 36 10 124588695 124588695 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022034 exon3 c.C276A p.V92V . . . CPXM2 119587 broad.mit.edu 36 10 125547542 125547542 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198148 exon6 c.T829C p.S277P . . . FAM175B 23172 broad.mit.edu 36 10 126509940 126509940 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032182 exon8 c.A696G p.R232R . . . FANK1 92565 broad.mit.edu 36 10 127658854 127658854 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145235 exon2 c.G148T p.E50X . . . DOCK1 1793 broad.mit.edu 36 10 128936270 128936270 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001380 exon28 c.C2793T p.F931F . . . PHYH 5264 broad.mit.edu 36 10 13376527 13376527 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037537 exon3 c.G21A p.S7S . . . PRPF18 8559 broad.mit.edu 36 10 13696064 13696064 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003675 exon8 c.A764C p.K255T . . . DCLRE1C 64421 broad.mit.edu 36 10 15036012 15036012 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033855 exon1 c.A4C p.S2R . . . ITGA8 8516 broad.mit.edu 36 10 15766046 15766046 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003638 exon4 c.C531A p.N177K . . . VIM 7431 broad.mit.edu 36 10 17317198 17317198 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003380 exon7 c.C1033T p.R345C . . . DNAJC1 64215 broad.mit.edu 36 10 22257467 22257467 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022365 exon3 c.T345G p.V115V . . . GPR158 57512 broad.mit.edu 36 10 25741222 25741222 + Missense_Mutation SNP A T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020752 exon4 c.A1149T p.K383N . . . WAC 51322 broad.mit.edu 36 10 28924888 28924888 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016628 exon7 c.G831T p.K277N . . . CCDC7 221016 broad.mit.edu 36 10 32780801 32780801 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145023 exon2 c.G225T p.K75N . . . ZNF248 57209 broad.mit.edu 36 10 38161591 38161591 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021045 exon6 c.A698C p.K233T . . . ZNF33A 7581 broad.mit.edu 36 10 38383568 38383568 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006954 exon5 c.T510G p.F170L . . . ZNF33A 7581 broad.mit.edu 36 10 38384095 38384095 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006954 exon5 c.G1037A p.R346Q . . . ZNF33B 7582 broad.mit.edu 36 10 42408938 42408938 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006955 exon5 c.G1466T p.R489I . . . BMS1 9790 broad.mit.edu 36 10 42608435 42608435 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014753 exon8 c.A926G p.D309G . . . HNRNPF 3185 broad.mit.edu 36 10 43203002 43203002 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098208 exon3 c.G337A p.V113M . . . DIP2C 22982 broad.mit.edu 36 10 451734 451734 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014974 exon7 c.C834T p.V278V . . . MAPK8 5599 broad.mit.edu 36 10 49288110 49288110 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002750 exon4 c.C343A p.L115I . . . AKR1C2 1646 broad.mit.edu 36 10 5033729 5033729 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205845 exon3 c.G229T p.E77X . . . CHAT 1103 broad.mit.edu 36 10 50529984 50529984 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142929 exon11 c.G1206A p.G402G . . . AKR1C3 8644 broad.mit.edu 36 10 5139674 5139674 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003739 exon9 c.T951C p.Y317Y . . . AKR1C4 1109 broad.mit.edu 36 10 5250709 5250709 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001818 exon9 c.T958G p.S320A . . . PRKG1 5592 broad.mit.edu 36 10 53234445 53234445 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006258 exon4 c.A687C p.E229D . . . PCDH15 65217 broad.mit.edu 36 10 55252858 55252858 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon31 c.G4514T p.R1505I . . . ANK3 288 broad.mit.edu 36 10 61504049 61504049 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.C6596A p.T2199N . . . ARID5B 84159 broad.mit.edu 36 10 63487050 63487050 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032199 exon6 c.A1015G p.I339V . . . TET1 80312 broad.mit.edu 36 10 70003940 70003940 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon2 c.G1839T p.K613N . . . TET1 80312 broad.mit.edu 36 10 70121200 70121200 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon12 c.G6034A p.A2012T . . . KIAA1274 27143 broad.mit.edu 36 10 71964546 71964546 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014431 exon10 c.G1168T p.E390X . . . CDH23 64072 broad.mit.edu 36 10 72996606 72996606 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052836 exon7 c.C531A p.F177L . . . CDH23 64072 broad.mit.edu 36 10 73131958 73131958 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022124 exon22 c.C2571T p.V857V . . . CDH23 64072 broad.mit.edu 36 10 73230504 73230504 + Missense_Mutation SNP G A A rs41281336 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171933 exon6 c.G748A p.E250K . . . OIT3 170392 broad.mit.edu 36 10 74354276 74354276 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152635 exon7 c.T1235G p.L412R . . . P4HA1 5033 broad.mit.edu 36 10 74501904 74501904 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142595 exon5 c.A214C p.K72Q . . . NUDT13 25961 broad.mit.edu 36 10 74551989 74551989 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015901 exon4 c.G274A p.D92N . . . ECD 11319 broad.mit.edu 36 10 74567833 74567833 + Nonsense_Mutation SNP C A A rs34313575 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135753 exon11 c.G1294T p.E432X . . . MYOZ1 58529 broad.mit.edu 36 10 75067523 75067523 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021245 exon3 c.C237A p.F79L . . . MYST4 23522 broad.mit.edu 36 10 76458348 76458348 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012330 exon18 c.C3760T p.R1254C . . . ITIH2 3698 broad.mit.edu 36 10 7826825 7826825 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002216 exon19 c.C2474A p.S825Y . . . KCNMA1 3778 broad.mit.edu 36 10 78455216 78455216 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001014797 exon17 c.G1934A p.R645Q . . . ANXA11 311 broad.mit.edu 36 10 81913315 81913315 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145869 exon11 c.C984T p.S328S . . . PTEN 5728 broad.mit.edu 36 10 89614225 89614225 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000314 exon1 c.G19T p.E7X PTEN,central_nervous_system,brain,Substitution - Nonsense,0 . . LIPF 8513 broad.mit.edu 36 10 90417373 90417373 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004190 exon3 c.T173G p.I58S . . . LIPF 8513 broad.mit.edu 36 10 90428376 90428376 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004190 exon10 c.T1155G p.V385V . . . FAS 355 broad.mit.edu 36 10 90757552 90757552 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000043 exon3 c.T312C p.C104C . . . FAS 355 broad.mit.edu 36 10 90764104 90764104 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000043 exon9 c.A925C p.K309Q . . . KIF20B 9585 broad.mit.edu 36 10 91487499 91487499 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon20 c.G2801A p.S934N . . . ANKRD1 27063 broad.mit.edu 36 10 92667483 92667483 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014391 exon5 c.G538A p.E180K . . . HECTD2 143279 broad.mit.edu 36 10 93247904 93247904 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182765 exon16 c.C1740A p.F580L . . . BTAF1 9044 broad.mit.edu 36 10 93744313 93744313 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003972 exon23 c.G3241T p.E1081X . . . IDE 3416 broad.mit.edu 36 10 94204234 94204234 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004969 exon25 c.C3007A p.P1003T . . . KIF11 3832 broad.mit.edu 36 10 94397976 94397976 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004523 exon19 c.A2575C p.S859R . . . HHEX 3087 broad.mit.edu 36 10 94444486 94444486 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002729 exon4 c.G794T p.S265I . . . CYP2C18 1562 broad.mit.edu 36 10 96456594 96456594 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000772 exon5 c.A706C p.N236H . . . BLNK 29760 broad.mit.edu 36 10 97941757 97941757 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013314 exon17 c.G1333T p.D445Y . . . DNTT 1791 broad.mit.edu 36 10 98074054 98074054 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004088 exon6 c.G792T p.E264D . . . C10orf12 26148 broad.mit.edu 36 10 98733991 98733991 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015652 exon1 c.C2854T p.R952X . . . ARHGAP19 84986 broad.mit.edu 36 10 99015828 99015828 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032900 exon2 c.G101T p.R34L . . . MUC5B 727897 broad.mit.edu 36 11 1221159 1221160 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002458 exon31 c.6473_6474insC p.I2158fs . . . MMP13 4322 broad.mit.edu 36 11 102320240 102320240 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002427 exon10 c.C1381T p.R461C . . . AASDHPPT 60496 broad.mit.edu 36 11 105467347 105467347 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015423 exon4 c.T626C p.I209T . . . GUCY1A2 2977 broad.mit.edu 36 11 106354658 106354658 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000855 exon3 c.G384T p.K128N . . . CWF19L2 143884 broad.mit.edu 36 11 106805176 106805176 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152434 exon8 c.A992C p.K331T . . . ATM 472 broad.mit.edu 36 11 107657033 107657033 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000051 exon24 c.C3504T p.C1168C . . . ATM 472 broad.mit.edu 36 11 107707855 107707855 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000051 exon52 c.T7669G p.L2557V . . . EXPH5 23086 broad.mit.edu 36 11 107890168 107890168 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015065 exon6 c.C1276T p.R426C . . . PPP2R1B 5519 broad.mit.edu 36 11 111123941 111123941 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181699 exon11 c.A1346C p.E449A . . . ALG9 79796 broad.mit.edu 36 11 111216734 111216734 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077691 exon10 c.T514G p.L172V . . . C11orf57 55216 broad.mit.edu 36 11 111458638 111458638 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082969 exon6 c.A614C p.K205T . . . ZW10 9183 broad.mit.edu 36 11 113114238 113114238 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004724 exon13 c.C1842T p.D614D . . . ZBTB16 7704 broad.mit.edu 36 11 113440052 113440052 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006006 exon2 c.G820T p.E274X . . . RNF214 257160 broad.mit.edu 36 11 116614820 116614820 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077239 exon3 c.C401A p.S134Y . . . RNF214 257160 broad.mit.edu 36 11 116615780 116615780 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077239 exon4 c.G672T p.K224N . . . DSCAML1 57453 broad.mit.edu 36 11 116815803 116815803 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon22 c.C4102T p.R1368W . . . TMPRSS13 84000 broad.mit.edu 36 11 117284573 117284573 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077263 exon9 c.G1246A p.A416T . . . IL10RA 3587 broad.mit.edu 36 11 117364411 117364411 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001558 exon2 c.G172T p.E58X . . . SCN2B 6327 broad.mit.edu 36 11 117544013 117544013 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004588 exon3 c.G445T p.E149X . . . MPZL2 10205 broad.mit.edu 36 11 117636006 117636006 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144765 exon4 c.G557T p.R186I . . . MLL 4297 broad.mit.edu 36 11 117881712 117881712 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon27 c.T9886C p.F3296L . . . VPS11 55823 broad.mit.edu 36 11 118449751 118449751 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021729 exon7 c.C1117T p.R373X . . . MCAM 4162 broad.mit.edu 36 11 118686361 118686361 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006500 exon15 c.G1819A p.E607K . . . USP2 9099 broad.mit.edu 36 11 118733424 118733424 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_171997 exon10 c.G961T p.E321X . . . USP47 55031 broad.mit.edu 36 11 11926121 11926121 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017944 exon20 c.T2941G p.L981V . . . SC5DL 6309 broad.mit.edu 36 11 120683196 120683196 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006918 exon5 c.T665G p.F222C . . . CRTAM 56253 broad.mit.edu 36 11 122243936 122243936 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019604 exon9 c.G970A p.E324K . . . OR10G9 219870 broad.mit.edu 36 11 123399029 123399029 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001953 exon1 c.G100A p.V34M . . . OR8D2 283160 broad.mit.edu 36 11 123694483 123694483 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002918 exon1 c.C821A p.S274Y . . . ROBO4 54538 broad.mit.edu 36 11 124270678 124270678 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019055 exon6 c.C921T p.S307S . . . BARX2 8538 broad.mit.edu 36 11 128826318 128826318 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003658 exon4 c.G651A p.E217E . . . TMEM45B 120224 broad.mit.edu 36 11 129232550 129232550 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138788 exon5 c.T703G p.S235A . . . APLP2 334 broad.mit.edu 36 11 129484690 129484690 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001642 exon2 c.C262A p.L88I . . . ZBTB44 29068 broad.mit.edu 36 11 129636533 129636533 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014155 exon2 c.C446A p.S149Y . . . SNX19 399979 broad.mit.edu 36 11 130254800 130254800 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014758 exon10 c.T2775G p.I925M . . . GLB1L3 112937 broad.mit.edu 36 11 133656537 133656537 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080407 exon4 c.A419G p.N140S . . . PDE3B 5140 broad.mit.edu 36 11 14839435 14839435 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000922 exon14 c.C2833T p.R945X . . . SOX6 55553 broad.mit.edu 36 11 16028023 16028023 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033326 exon11 c.G1289A p.R430Q . . . ABCC8 6833 broad.mit.edu 36 11 17382652 17382652 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon28 c.C3540A p.Y1180X . . . KCNC1 3746 broad.mit.edu 36 11 17714440 17714440 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004976 exon1 c.C315A p.C105X . . . MRGPRX4 117196 broad.mit.edu 36 11 18152112 18152112 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054032 exon1 c.A733G p.N245D . . . LDHA 3939 broad.mit.edu 36 11 18377590 18377590 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135239 exon3 c.G163A p.E55K . . . ANO5 203859 broad.mit.edu 36 11 22199254 22199254 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142649 exon5 c.C213T p.F71F . . . ANO3 63982 broad.mit.edu 36 11 26577819 26577819 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031418 exon17 c.C1818A p.I606I . . . ANO3 63982 broad.mit.edu 36 11 26617347 26617347 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031418 exon21 c.C2124A p.F708L . . . BBOX1 8424 broad.mit.edu 36 11 27103802 27103802 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003986 exon8 c.C862T p.R288C . . . LGR4 55366 broad.mit.edu 36 11 27346811 27346811 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018490 exon18 c.T2035G p.F679V . . . KCNA4 3739 broad.mit.edu 36 11 29990551 29990551 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002233 exon2 c.G251T p.R84M . . . FSHB 2488 broad.mit.edu 36 11 30211918 30211918 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000510 exon3 c.G385T p.E129X . . . MPPED2 744 broad.mit.edu 36 11 30473465 30473465 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001584 exon3 c.G490A p.D164N . . . C11orf41 25758 broad.mit.edu 36 11 33584938 33584938 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012194 exon13 c.C4164T p.N1388N . . . ELF5 2001 broad.mit.edu 36 11 34459055 34459055 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001422 exon6 c.G511A p.D171N . . . TRIM44 54765 broad.mit.edu 36 11 35713553 35713553 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017583 exon4 c.G991A p.D331N . . . RAG1 5896 broad.mit.edu 36 11 36551577 36551577 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.G147T p.K49N . . . RAG1 5896 broad.mit.edu 36 11 36554323 36554323 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.G2893T p.E965X . . . LRRC4C 57689 broad.mit.edu 36 11 40093335 40093335 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.G1084T p.D362Y . . . ACCSL 390110 broad.mit.edu 36 11 44026239 44026239 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031854 exon1 c.A77G p.Y26C . . . CHST1 8534 broad.mit.edu 36 11 45628305 45628305 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003654 exon4 c.G745A p.D249N . . . PHF21A 51317 broad.mit.edu 36 11 45913850 45913850 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101802 exon17 c.A1698G p.K566K . . . PHF21A 51317 broad.mit.edu 36 11 45914628 45914628 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101802 exon16 c.C1674T p.Y558Y . . . DDB2 1643 broad.mit.edu 36 11 47216066 47216066 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000107 exon8 c.G1126A p.D376N . . . ACP2 53 broad.mit.edu 36 11 47223863 47223863 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001131064 exon4 c.G396A p.P132P . . . NUP160 23279 broad.mit.edu 36 11 47790333 47790333 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015231 exon17 c.A2100C p.R700R . . . OR4X1 390113 broad.mit.edu 36 11 48242192 48242192 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004726 exon1 c.G204T p.E68D . . . OR51T1 401665 broad.mit.edu 36 11 4860189 4860189 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004759 exon1 c.C565A p.L189I . . . OR52A5 390054 broad.mit.edu 36 11 5110256 5110256 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005160 exon1 c.T193G p.L65V . . . OR4C46 119749 broad.mit.edu 36 11 51372601 51372601 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004703 exon1 c.C744A p.F248L . . . OR51V1 283111 broad.mit.edu 36 11 5178456 5178456 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004760 exon1 c.G51A p.T17T . . . HBB 3043 broad.mit.edu 36 11 5204572 5204572 + Missense_Mutation SNP G T T rs35755331 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000518 exon2 c.C126A p.F42L . . . HBD 3045 broad.mit.edu 36 11 5211986 5211986 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000519 exon2 c.C126A p.F42L . . . OR4A16 81327 broad.mit.edu 36 11 54867496 54867496 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005274 exon1 c.G244T p.D82Y . . . OR52H1 390067 broad.mit.edu 36 11 5523292 5523292 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005289 exon1 c.G38A p.S13N . . . OR5F1 338674 broad.mit.edu 36 11 55518638 55518638 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003697 exon1 c.C40A p.L14I . . . OR8K3 219473 broad.mit.edu 36 11 55843297 55843297 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005202 exon1 c.A939G p.X313X . . . OR8K1 390157 broad.mit.edu 36 11 55870127 55870127 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002907 exon1 c.A37G p.T13A . . . OR5M1 390168 broad.mit.edu 36 11 56136715 56136715 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004740 exon1 c.T840G p.F280L . . . SERPING1 710 broad.mit.edu 36 11 57124214 57124214 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000062 exon3 c.C338A p.S113Y . . . MED19 219541 broad.mit.edu 36 11 57229252 57229252 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153450 exon2 c.G243A p.T81T . . . OR5B12 390191 broad.mit.edu 36 11 57963457 57963457 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004733 exon1 c.C744A p.I248I . . . OR52E6 390078 broad.mit.edu 36 11 5819185 5819185 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005167 exon1 c.T519G p.H173Q . . . OR52E4 390081 broad.mit.edu 36 11 5863032 5863032 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005165 exon1 c.G934T p.E312X . . . OR5AN1 390195 broad.mit.edu 36 11 58889179 58889179 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004729 exon1 c.C672T p.I224I . . . MS4A2 2206 broad.mit.edu 36 11 59617579 59617579 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000139 exon5 c.C509T p.T170I . . . MS4A7 58475 broad.mit.edu 36 11 59913584 59913584 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206938 exon4 c.C350T p.S117L . . . MS4A14 84689 broad.mit.edu 36 11 59924483 59924483 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032597 exon3 c.G298A p.D100N . . . TUT1 64852 broad.mit.edu 36 11 62099184 62099184 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022830 exon9 c.C2697A p.F899L . . . RTN3 10313 broad.mit.edu 36 11 63244990 63244990 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201428 exon2 c.G2383T p.E795X . . . PYGM 5837 broad.mit.edu 36 11 64276013 64276013 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164716 exon12 c.G1463A p.R488Q . . . FAU 2197 broad.mit.edu 36 11 64644796 64644796 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001997 exon5 c.A335G p.Y112C . . . ACTN3 89 broad.mit.edu 36 11 66075633 66075633 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104 exon3 c.T321G p.V107V . . . RBM4 5936 broad.mit.edu 36 11 66164085 66164085 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198843 exon2 c.C327T p.I109I . . . PPP6R3 55291 broad.mit.edu 36 11 68082614 68082614 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164164 exon9 c.G736T p.E246X . . . IGHMBP2 3508 broad.mit.edu 36 11 68441826 68441826 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002180 exon7 c.G959A p.R320Q . . . MRGPRD 116512 broad.mit.edu 36 11 68504446 68504446 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198923 exon1 c.C586T p.L196L . . . ZNF214 7761 broad.mit.edu 36 11 6978285 6978285 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013249 exon3 c.G1205A p.R402Q . . . OR2AT4 341152 broad.mit.edu 36 11 74477878 74477878 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005285 exon1 c.G529A p.A177T . . . PAK1 5058 broad.mit.edu 36 11 76732575 76732575 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002576 exon10 c.T935G p.I312S . . . RAB30 27314 broad.mit.edu 36 11 82385988 82385988 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014488 exon3 c.G19T p.D7Y . . . SYTL2 54843 broad.mit.edu 36 11 85116594 85116594 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032943 exon8 c.T1452C p.R484R . . . CCDC83 220047 broad.mit.edu 36 11 85299999 85299999 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173556 exon8 c.G700T p.E234X . . . NOX4 50507 broad.mit.edu 36 11 88775192 88775192 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016931 exon9 c.T796G p.F266V . . . FOLH1B 219595 broad.mit.edu 36 11 89046950 89046950 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153696 exon6 c.G349T p.E117X . . . SCUBE2 57758 broad.mit.edu 36 11 9025637 9025637 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020974 exon16 c.G1844A p.R615H . . . FAT3 120114 broad.mit.edu 36 11 92255931 92255931 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon23 c.G12661A p.V4221I . . . CCDC67 159989 broad.mit.edu 36 11 92810447 92810447 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181645 exon14 c.C1729A p.L577I . . . C11orf54 28970 broad.mit.edu 36 11 93128138 93128138 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014039 exon6 c.T445G p.C149G . . . MRE11A 4361 broad.mit.edu 36 11 93843439 93843439 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005591 exon9 c.G863A p.R288H . . . PIWIL4 143689 broad.mit.edu 36 11 93990843 93990843 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152431 exon17 c.A2090G p.D697G . . . ENDOD1 23052 broad.mit.edu 36 11 94501769 94501769 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015036 exon2 c.G881A p.R294Q . . . MAML2 84441 broad.mit.edu 36 11 95351778 95351778 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032427 exon5 c.C3453A p.I1151I . . . CCDC82 79780 broad.mit.edu 36 11 95726496 95726496 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024725 exon10 c.T1597G p.F533V . . . CCDC82 79780 broad.mit.edu 36 11 95756254 95756254 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024725 exon5 c.A818C p.D273A . . . CNTN5 53942 broad.mit.edu 36 11 99220867 99220867 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175566 exon4 c.G129T p.K43N . . . CNTN5 53942 broad.mit.edu 36 11 99221037 99221037 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175566 exon5 c.G188A p.R63Q . . . MYBPC1 4604 broad.mit.edu 36 12 100584664 100584664 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206820 exon21 c.A2293C p.K765Q . . . OLR1 4973 broad.mit.edu 36 12 10215880 10215880 + Nonsense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002543 exon1 c.A64T p.K22X . . . STAB2 55576 broad.mit.edu 36 12 102573205 102573205 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon14 c.C1598A p.S533Y . . . STAB2 55576 broad.mit.edu 36 12 102578666 102578666 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon17 c.G1864A p.D622N . . . POLR3B 55703 broad.mit.edu 36 12 105381402 105381402 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018082 exon23 c.G2587A p.D863N . . . BTBD11 121551 broad.mit.edu 36 12 106438423 106438423 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018072 exon2 c.C1165A p.L389I . . . WSCD2 9671 broad.mit.edu 36 12 107128151 107128151 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014653 exon4 c.C621T p.C207C . . . WSCD2 9671 broad.mit.edu 36 12 107142676 107142676 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014653 exon5 c.G713A p.R238H . . . FOXN4 121643 broad.mit.edu 36 12 108207567 108207567 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213596 exon8 c.G826A p.D276N . . . TAS2R10 50839 broad.mit.edu 36 12 10869397 10869397 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023921 exon1 c.A739C p.I247L . . . ATP2A2 488 broad.mit.edu 36 12 109263147 109263147 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170665 exon14 c.G2062T p.E688X . . . MYL2 4633 broad.mit.edu 36 12 109837945 109837945 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000432 exon3 c.C126T p.G42G . . . RPL6 6128 broad.mit.edu 36 12 111328176 111328176 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024662 exon6 c.T578G p.F193C . . . PLBD2 196463 broad.mit.edu 36 12 112306322 112306322 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159727 exon7 c.G987T p.K329N . . . RBM19 9904 broad.mit.edu 36 12 112881494 112881494 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016196 exon5 c.G477A p.S159S . . . MED13L 23389 broad.mit.edu 36 12 115159724 115159724 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015335 exon2 c.A242C p.K81T . . . FBXO21 23014 broad.mit.edu 36 12 116094688 116094688 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015002 exon7 c.C984A p.F328L . . . KSR2 283455 broad.mit.edu 36 12 116890281 116890281 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173598 exon1 c.G76T p.E26X . . . VSIG10 54621 broad.mit.edu 36 12 116996113 116996113 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019086 exon5 c.C993T p.C331C . . . CIT 11113 broad.mit.edu 36 12 118643556 118643556 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon28 c.C3547T p.R1183W . . . CLIP1 6249 broad.mit.edu 36 12 121391687 121391687 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198240 exon9 c.G1879A p.E627K . . . ZCCHC8 55596 broad.mit.edu 36 12 121532100 121532100 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017612 exon10 c.C940T p.R314C . . . LRP6 4040 broad.mit.edu 36 12 12208502 12208502 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon9 c.G2024A p.R675Q . . . SBNO1 55206 broad.mit.edu 36 12 122376816 122376816 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018183 exon13 c.C1708T p.R570W . . . DNAH10 196385 broad.mit.edu 36 12 122982189 122982189 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon74 c.G12616T p.E4206X . . . BRI3BP 140707 broad.mit.edu 36 12 124075561 124075561 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080626 exon3 c.G388A p.G130S . . . CDKN1B 1027 broad.mit.edu 36 12 12763064 12763064 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004064 exon2 c.G514T p.E172X . . . RIMBP2 23504 broad.mit.edu 36 12 129456705 129456705 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015347 exon17 c.G2962T p.V988F . . . POLE 5426 broad.mit.edu 36 12 131759920 131759920 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon14 c.C1376T p.S459F . . . ZNF140 7699 broad.mit.edu 36 12 132193269 132193269 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003440 exon5 c.A1333C p.N445H . . . GUCY2C 2984 broad.mit.edu 36 12 14670073 14670073 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004963 exon21 c.A2293C p.I765L . . . ART4 420 broad.mit.edu 36 12 14885226 14885226 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021071 exon2 c.G273T p.K91N . . . GYS2 2998 broad.mit.edu 36 12 21624559 21624559 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021957 exon2 c.A287T p.N96I . . . CASC1 55259 broad.mit.edu 36 12 25167456 25167456 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082972 exon10 c.A1208C p.K403T . . . KRAS 3845 broad.mit.edu 36 12 25269973 25269973 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004985 exon4 c.G292T p.E98X . . . RASSF8 11228 broad.mit.edu 36 12 26099552 26099552 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007211 exon3 c.T9C p.L3L . . . ITPR2 3709 broad.mit.edu 36 12 26702269 26702269 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon17 c.G1948T p.E650X . . . TMTC1 83857 broad.mit.edu 36 12 29799909 29799909 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193451 exon4 c.C731T p.S244L . . . DENND5B 160518 broad.mit.edu 36 12 31431983 31431983 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144973 exon21 c.C3646T p.R1216C . . . DNM1L 10059 broad.mit.edu 36 12 32757500 32757500 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012062 exon6 c.G547A p.A183T . . . SYT10 341359 broad.mit.edu 36 12 33424082 33424082 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198992 exon6 c.G1452A p.M484I . . . KIF21A 55605 broad.mit.edu 36 12 38012402 38012402 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173465 exon19 c.G2824A p.G942R . . . ABCD2 225 broad.mit.edu 36 12 38284064 38284064 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005164 exon5 c.G1417T p.D473Y . . . CNTN1 1272 broad.mit.edu 36 12 39613933 39613933 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175038 exon8 c.G938T p.R313I . . . CNTN1 1272 broad.mit.edu 36 12 39624234 39624234 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175038 exon13 c.T1645G p.F549V . . . ADAMTS20 80070 broad.mit.edu 36 12 42111453 42111453 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025003 exon22 c.T3210C p.S1070S . . . ADAMTS20 80070 broad.mit.edu 36 12 42119992 42119992 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025003 exon17 c.G2438A p.R813Q . . . PUS7L 83448 broad.mit.edu 36 12 42434820 42434820 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098615 exon2 c.A496C p.I166L . . . SLC38A4 55089 broad.mit.edu 36 12 45448363 45448363 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018018 exon16 c.C1539T p.V513V . . . AKAP3 10566 broad.mit.edu 36 12 4607524 4607524 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006422 exon4 c.C805T p.R269X . . . C12orf54 121273 broad.mit.edu 36 12 47174885 47174885 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152319 exon8 c.T280G p.L94V . . . C12orf41 54934 broad.mit.edu 36 12 47335020 47335020 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017822 exon9 c.G1318T p.E440X . . . KRT83 3889 broad.mit.edu 36 12 50997048 50997048 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002282 exon5 c.C777T p.I259I . . . KRT5 3852 broad.mit.edu 36 12 51195850 51195850 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000424 exon8 c.C1473A p.I491I . . . TARBP2 6895 broad.mit.edu 36 12 52184835 52184835 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004178 exon6 c.G519T p.M173I . . . ITGA7 3679 broad.mit.edu 36 12 54374508 54374508 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144997 exon17 c.G2064A p.E688E . . . CNPY2 10330 broad.mit.edu 36 12 54991061 54991061 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014255 exon5 c.C453A p.F151L . . . HSD17B6 8630 broad.mit.edu 36 12 55467272 55467272 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003725 exon5 c.G833A p.R278Q . . . LRP1 4035 broad.mit.edu 36 12 55878688 55878688 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002332 exon60 c.T9644G p.F3215C . . . MARS 4141 broad.mit.edu 36 12 56195093 56195093 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004990 exon17 c.G2189A p.G730D . . . SLC16A7 9194 broad.mit.edu 36 12 58455047 58455047 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004731 exon4 c.A704C p.K235T . . . SLC16A7 9194 broad.mit.edu 36 12 58455452 58455452 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004731 exon4 c.G1109T p.R370I . . . VWF 7450 broad.mit.edu 36 12 5975600 5975600 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000552 exon35 c.G5892A p.Q1964Q . . . VWF 7450 broad.mit.edu 36 12 5992937 5992937 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000552 exon32 c.G5591A p.G1864D . . . LTBR 4055 broad.mit.edu 36 12 6369580 6369580 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002342 exon9 c.G843A p.P281P . . . NCAPD2 9918 broad.mit.edu 36 12 6497069 6497069 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014865 exon12 c.A1367C p.K456T . . . GRIP1 23426 broad.mit.edu 36 12 65072527 65072527 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178074 exon18 c.G2136T p.K712N . . . CHD4 1108 broad.mit.edu 36 12 6577498 6577498 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon12 c.G1715A p.R572Q . . . MDM1 56890 broad.mit.edu 36 12 67003214 67003214 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017440 exon5 c.G707T p.R236I . . . NUP107 57122 broad.mit.edu 36 12 67411720 67411720 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020401 exon22 c.T1952G p.F651C . . . NUP107 57122 broad.mit.edu 36 12 67412775 67412775 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020401 exon23 c.G2090A p.R697K . . . BEST3 144453 broad.mit.edu 36 12 68335112 68335112 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152439 exon6 c.C1210A p.L404I . . . BEST3 144453 broad.mit.edu 36 12 68377727 68377727 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032735 exon2 c.C119T p.A40V . . . PTPRR 5801 broad.mit.edu 36 12 69434346 69434346 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002849 exon5 c.A630C p.K210N . . . C1S 716 broad.mit.edu 36 12 7047717 7047717 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201442 exon12 c.G1568A p.R523Q . . . CD163 9332 broad.mit.edu 36 12 7529054 7529054 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203416 exon11 c.G2684T p.C895F . . . NAV3 89795 broad.mit.edu 36 12 76924665 76924665 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon8 c.G1216T p.G406X . . . NAV3 89795 broad.mit.edu 36 12 77106595 77106595 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon32 c.G5896A p.D1966N . . . NAV3 89795 broad.mit.edu 36 12 77115201 77115201 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon34 c.C6269A p.A2090D . . . PPFIA2 8499 broad.mit.edu 36 12 80363596 80363596 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003625 exon6 c.G440A p.R147Q . . . WNK1 65125 broad.mit.edu 36 12 806558 806558 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184985 exon3 c.G1022A p.R341Q . . . CLEC4A 50856 broad.mit.edu 36 12 8169513 8169513 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194450 exon2 c.G172A p.A58T . . . FAM90A1 55138 broad.mit.edu 36 12 8265762 8265762 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018088 exon7 c.C1318T p.R440C . . . SLC6A15 55117 broad.mit.edu 36 12 83809883 83809883 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018057 exon2 c.G148T p.D50Y . . . LRRIQ1 84125 broad.mit.edu 36 12 84016809 84016809 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032165 exon13 c.G3115T p.E1039X . . . MGAT4C 25834 broad.mit.edu 36 12 84901572 84901572 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013244 exon6 c.A155C p.D52A . . . AICDA 57379 broad.mit.edu 36 12 8649173 8649173 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020661 exon3 c.C332T p.A111V . . . C12orf50 160419 broad.mit.edu 36 12 86905818 86905818 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152589 exon9 c.A757G p.T253A . . . DUSP6 1848 broad.mit.edu 36 12 88268504 88268504 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001946 exon2 c.C830A p.S277Y . . . POC1B 282809 broad.mit.edu 36 12 88384727 88384727 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172240 exon9 c.T983C p.I328T . . . RAD52 5893 broad.mit.edu 36 12 893507 893507 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134424 exon11 c.G1009A p.D337N . . . C12orf12 196477 broad.mit.edu 36 12 89871747 89871747 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152638 exon1 c.G904A p.E302K . . . DCN 1634 broad.mit.edu 36 12 90063998 90063998 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001920 exon8 c.C1048T p.R350C . . . FGD6 55785 broad.mit.edu 36 12 94012569 94012569 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018351 exon15 c.C3530T p.A1177V . . . CD69 969 broad.mit.edu 36 12 9800250 9800250 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001781 exon2 c.C97A p.H33N . . . CAPS2 84698 broad.mit.edu 36 12 73959016 73959016 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . NALCN 259232 broad.mit.edu 36 13 100828980 100828980 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon4 c.G317A p.R106H . . . ERCC5 2073 broad.mit.edu 36 13 102308634 102308634 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000123 exon6 c.C537A p.F179L . . . ARGLU1 55082 broad.mit.edu 36 13 105994475 105994475 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018011 exon4 c.G692T p.R231I . . . CARKD 55739 broad.mit.edu 36 13 110088842 110088842 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018210 exon10 c.T1146G p.G382G . . . TUBGCP3 10426 broad.mit.edu 36 13 112191949 112191949 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006322 exon21 c.G2512T p.E838X . . . ATP11A 23250 broad.mit.edu 36 13 112584360 112584360 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032189 exon29 c.G3557A p.R1186H . . . CDC16 8881 broad.mit.edu 36 13 114025817 114025817 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001078645 exon6 c.C501T p.F167F . . . ZMYM2 7750 broad.mit.edu 36 13 19554206 19554206 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197968 exon22 c.C3504T p.Y1168Y . . . ZMYM2 7750 broad.mit.edu 36 13 19555133 19555133 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197968 exon23 c.C3781T p.R1261X . . . PARP4 143 broad.mit.edu 36 13 23970367 23970368 + Splice_Site DNP CC AA AA novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 CC CC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006437 exon6 c.478_478TT . . . . ATP12A 479 broad.mit.edu 36 13 24178568 24178568 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon15 c.G2154T p.Q718H ATP12A,central_nervous_system,brain,Substitution - Missense,+2 . . RNF17 56163 broad.mit.edu 36 13 24265460 24265460 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184993 exon10 c.G1216T p.E406X . . . RNF17 56163 broad.mit.edu 36 13 24314221 24314221 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184993 exon19 c.C2525A p.S842Y . . . ATP8A2 51761 broad.mit.edu 36 13 25004445 25004445 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon5 c.G456T p.K152N . . . ATP8A2 51761 broad.mit.edu 36 13 25300264 25300264 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon28 c.C2688T p.F896F . . . GTF3A 2971 broad.mit.edu 36 13 26907314 26907314 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002097 exon8 c.G918T p.K306N . . . KATNAL1 84056 broad.mit.edu 36 13 29682544 29682544 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032116 exon10 c.C1183T p.R395C . . . FRY 10129 broad.mit.edu 36 13 31603849 31603849 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon8 c.G757T p.E253X . . . FRY 10129 broad.mit.edu 36 13 31724038 31724038 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon50 c.A7194G p.V2398V . . . BRCA2 675 broad.mit.edu 36 13 31804578 31804578 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000059 exon10 c.A963C p.Q321H . . . BRCA2 675 broad.mit.edu 36 13 31870801 31870801 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000059 exon27 c.G10151A p.R3384Q . . . N4BP2L1 90634 broad.mit.edu 36 13 31876388 31876388 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079691 exon4 c.G417T p.K139N . . . N4BP2L2 10443 broad.mit.edu 36 13 31916029 31916029 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033111 exon7 c.C645T p.V215V . . . N4BP2L2 10443 broad.mit.edu 36 13 32008502 32008502 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014887 exon2 c.G663T p.K221N . . . NBEA 26960 broad.mit.edu 36 13 34645658 34645658 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015678 exon27 c.G4481A p.G1494E . . . SPG20 23111 broad.mit.edu 36 13 35801630 35801630 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142295 exon4 c.G1033T p.E345X . . . SMAD9 4093 broad.mit.edu 36 13 36351773 36351773 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005905 exon2 c.G54A p.V18V . . . TRPC4 7223 broad.mit.edu 36 13 37123390 37123390 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003306 exon8 c.G2091A p.Q697Q . . . TRPC4 7223 broad.mit.edu 36 13 37123470 37123470 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon8 c.A2011G p.K671E . . . TRPC4 7223 broad.mit.edu 36 13 37255363 37255363 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon2 c.C108T p.Y36Y . . . FREM2 341640 broad.mit.edu 36 13 38160299 38160299 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon1 c.G818A p.R273H . . . STOML3 161003 broad.mit.edu 36 13 38442392 38442392 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144033 exon6 c.G419T p.R140I . . . MTRF1 9617 broad.mit.edu 36 13 40695460 40695460 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004294 exon9 c.C1156T p.R386W . . . KIAA0564 23078 broad.mit.edu 36 13 41422079 41422079 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015058 exon2 c.G234A p.Q78Q . . . DGKH 160851 broad.mit.edu 36 13 41632235 41632235 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178009 exon7 c.G818A p.R273H . . . ZC3H13 23091 broad.mit.edu 36 13 45457498 45457498 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015070 exon10 c.G1655A p.R552Q . . . LCP1 3936 broad.mit.edu 36 13 45606364 45606364 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002298 exon14 c.G1525T p.E509X . . . LCP1 3936 broad.mit.edu 36 13 45619100 45619100 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002298 exon10 c.G1118T p.R373I . . . C13orf18 80183 broad.mit.edu 36 13 45831740 45831740 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025113 exon9 c.G1147T p.D383Y . . . CYSLTR2 57105 broad.mit.edu 36 13 48179795 48179795 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020377 exon1 c.G841T p.D281Y . . . CDADC1 81602 broad.mit.edu 36 13 48752748 48752748 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030911 exon8 c.C1323A p.I441I . . . CAB39L 81617 broad.mit.edu 36 13 48831955 48831955 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030925 exon4 c.G291A p.V97V . . . NEK5 341676 broad.mit.edu 36 13 51591534 51591534 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199289 exon4 c.G136T p.E46X . . . THSD1 55901 broad.mit.edu 36 13 51849828 51849828 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018676 exon5 c.C2278T p.R760C . . . RNF219 79596 broad.mit.edu 36 13 78088226 78088226 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024546 exon6 c.C1671T p.N557N . . . RNF219 79596 broad.mit.edu 36 13 78089194 78089194 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024546 exon6 c.C703T p.R235C . . . DCT 1638 broad.mit.edu 36 13 93916827 93916827 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001922 exon3 c.G682A p.E228K . . . DZIP1 22873 broad.mit.edu 36 13 95044325 95044325 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon15 c.G1497A p.Q499Q . . . TM9SF2 9375 broad.mit.edu 36 13 98970323 98970323 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004800 exon3 c.G272A p.R91H . . . CLYBL 171425 broad.mit.edu 36 13 99313341 99313341 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206808 exon4 c.T534G p.N178K . . . TRAF3 7187 broad.mit.edu 36 14 102411741 102411741 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145725 exon5 c.G325T p.E109X . . . MARK3 4140 broad.mit.edu 36 14 102988019 102988019 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128919 exon5 c.G358A p.E120K . . . BAG5 9529 broad.mit.edu 36 14 103095940 103095940 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015048 exon2 c.G1315A p.D439N . . . BAG5 9529 broad.mit.edu 36 14 103096393 103096393 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015048 exon2 c.G862T p.E288X . . . OR4M1 441670 broad.mit.edu 36 14 19318600 19318600 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005500 exon1 c.C279A p.S93S . . . OR4K2 390431 broad.mit.edu 36 14 19414481 19414481 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005501 exon1 c.C215A p.S72Y . . . CHD8 57680 broad.mit.edu 36 14 20939065 20939065 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020920 exon22 c.T3342G p.N1114K . . . MYH7 4625 broad.mit.edu 36 14 22968016 22968016 + Silent SNP G A A rs45508293 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon14 c.C1395T p.F465F . . . MYH7 4625 broad.mit.edu 36 14 22969642 22969642 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon11 c.C966A p.S322S . . . DHRS2 10202 broad.mit.edu 36 14 23178350 23178350 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005794 exon3 c.C263T p.A88V . . . DHRS4L1 728635 broad.mit.edu 36 14 23589933 23589933 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082488 exon10 c.C762T p.I254I . . . TM9SF1 10548 broad.mit.edu 36 14 23732193 23732193 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014842 exon3 c.G468T p.K156N . . . CHMP4A 29082 broad.mit.edu 36 14 23750817 23750817 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014169 exon2 c.G219A p.E73E . . . NEDD8 4738 broad.mit.edu 36 14 23757254 23757254 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199823 exon3 c.G74A p.R25Q . . . GZMB 3002 broad.mit.edu 36 14 24170993 24170993 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004131 exon4 c.C511T p.R171X . . . HECTD1 25831 broad.mit.edu 36 14 30641908 30641908 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015382 exon41 c.T7515G p.N2505K . . . ARHGAP5 394 broad.mit.edu 36 14 31632977 31632977 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030055 exon2 c.T3351G p.N1117K . . . SRP54 6729 broad.mit.edu 36 14 34538536 34538536 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003136 exon3 c.G100T p.E34X . . . LRFN5 145581 broad.mit.edu 36 14 41426326 41426326 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152447 exon3 c.T748C p.W250R . . . FAM179B 23116 broad.mit.edu 36 14 44550999 44550999 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015091 exon7 c.C3209A p.S1070Y . . . FANCM 57697 broad.mit.edu 36 14 44687832 44687832 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020937 exon4 c.G802T p.E268X . . . FANCM 57697 broad.mit.edu 36 14 44714088 44714088 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020937 exon14 c.T2381G p.F794C . . . MDGA2 161357 broad.mit.edu 36 14 46394034 46394034 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182830 exon15 c.T1932C p.N644N . . . KLHDC2 23588 broad.mit.edu 36 14 49314707 49314707 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014315 exon5 c.T529G p.F177V . . . SDCCAG1 9147 broad.mit.edu 36 14 49362403 49362403 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004713 exon16 c.G1509T p.K503N . . . SDCCAG1 9147 broad.mit.edu 36 14 49365657 49365657 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004713 exon13 c.G1097A p.R366Q . . . FBXO34 55030 broad.mit.edu 36 14 54888195 54888195 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152231 exon2 c.G1334A p.R445Q . . . C14orf101 54916 broad.mit.edu 36 14 56161998 56161998 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017799 exon12 c.A1544C p.K515T . . . OTX2 5015 broad.mit.edu 36 14 56338811 56338811 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021728 exon5 c.C289T p.R97X . . . SLC35F4 341880 broad.mit.edu 36 14 57125880 57125880 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080455 exon3 c.C502A p.L168I . . . C14orf37 145407 broad.mit.edu 36 14 57668145 57668145 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001872 exon4 c.C1669A p.L557M . . . ARID4A 5926 broad.mit.edu 36 14 57908366 57908366 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023000 exon24 c.C3518T p.A1173V . . . DAAM1 23002 broad.mit.edu 36 14 58895870 58895870 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014992 exon22 c.A2558G p.N853S . . . JKAMP 51528 broad.mit.edu 36 14 59024283 59024283 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098625 exon3 c.T217C p.Y73H . . . JKAMP 51528 broad.mit.edu 36 14 59040337 59040337 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098625 exon7 c.C712A p.L238I . . . SYT16 83851 broad.mit.edu 36 14 61532922 61532922 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031914 exon1 c.G432T p.E144D . . . KCNH5 27133 broad.mit.edu 36 14 62244917 62244917 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_172375 exon10 c.C1832T p.S611L . . . KCNH5 27133 broad.mit.edu 36 14 62537886 62537886 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172376 exon4 c.G175T p.E59X . . . SYNE2 23224 broad.mit.edu 36 14 63517143 63517143 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon15 c.G1588T p.E530X . . . SYNE2 23224 broad.mit.edu 36 14 63589466 63589466 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon48 c.G9082T p.E3028X . . . SYNE2 23224 broad.mit.edu 36 14 63589693 63589693 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon48 c.G9309T p.K3103N . . . FUT8 2530 broad.mit.edu 36 14 65258443 65258443 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178156 exon7 c.G1033T p.E345X . . . SMOC1 64093 broad.mit.edu 36 14 69559758 69559758 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034852 exon11 c.G1132A p.D378N . . . ADAM21 8747 broad.mit.edu 36 14 69994453 69994453 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003813 exon1 c.A484C p.N162H . . . HEATR4 399671 broad.mit.edu 36 14 73035531 73035531 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203309 exon12 c.C2212T p.R738X . . . YLPM1 56252 broad.mit.edu 36 14 74352719 74352719 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019589 exon12 c.C5563T p.R1855X . . . MLH3 27030 broad.mit.edu 36 14 74584356 74584356 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040108 exon2 c.G1756T p.E586X . . . ACYP1 97 broad.mit.edu 36 14 74599971 74599971 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203488 exon2 c.A39C p.E13D . . . FLVCR2 55640 broad.mit.edu 36 14 75171012 75171012 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017791 exon5 c.G1027T p.E343X . . . ADCK1 57143 broad.mit.edu 36 14 77461878 77461878 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142545 exon8 c.C823T p.R275C . . . DIO2 1734 broad.mit.edu 36 14 79738992 79738992 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000793 exon3 c.G615A p.P205P . . . FLRT2 23768 broad.mit.edu 36 14 85157783 85157783 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013231 exon2 c.C172T p.P58S . . . PTPN21 11099 broad.mit.edu 36 14 88037433 88037433 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007039 exon7 c.A620C p.Y207S . . . C14orf102 55051 broad.mit.edu 36 14 89838974 89838974 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017970 exon6 c.G1254A p.W418X . . . C14orf102 55051 broad.mit.edu 36 14 89854126 89854126 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017970 exon2 c.T149C p.V50A . . . TTC7B 145567 broad.mit.edu 36 14 90266177 90266177 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010854 exon5 c.A693G p.K231K . . . TRIP11 9321 broad.mit.edu 36 14 91535450 91535450 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004239 exon13 c.T4779G p.D1593E . . . ASB2 51676 broad.mit.edu 36 14 93487102 93487102 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016150 exon4 c.G732A p.K244K . . . SERPINA6 866 broad.mit.edu 36 14 93850397 93850397 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001756 exon2 c.A342C p.Q114H . . . SERPINA1 5265 broad.mit.edu 36 14 93919103 93919103 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127702 exon3 c.C225A p.F75L . . . SERPINA4 5267 broad.mit.edu 36 14 94103326 94103326 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006215 exon3 c.C916T p.R306W . . . SERPINA5 5104 broad.mit.edu 36 14 94123564 94123564 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000624 exon3 c.G112A p.A38T . . . CLMN 79789 broad.mit.edu 36 14 94739743 94739743 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024734 exon9 c.T1696G p.F566V . . . C14orf49 161176 broad.mit.edu 36 14 94991802 94991802 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152592 exon5 c.G802T p.D268Y . . . SETD3 84193 broad.mit.edu 36 14 98949082 98949082 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032233 exon8 c.C808A p.L270M . . . WDR25 79446 broad.mit.edu 36 14 99917056 99917056 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161476 exon2 c.G42A p.A14A . . . OR4F15 390649 broad.mit.edu 36 15 100176328 100176328 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001674 exon1 c.G416T p.R139I . . . OR4M2 390538 broad.mit.edu 36 15 19870217 19870217 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004719 exon1 c.C278A p.S93Y . . . OR4N4 283694 broad.mit.edu 36 15 19883853 19883853 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005241 exon1 c.A17C p.N6T . . . GABRB3 2562 broad.mit.edu 36 15 24344125 24344125 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021912 exon9 c.G1330A p.D444N . . . HERC2 8924 broad.mit.edu 36 15 26188002 26188002 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon11 c.A1433C p.N478T . . . TJP1 7082 broad.mit.edu 36 15 27798426 27798426 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175610 exon20 c.C2972T p.S991F . . . MTMR10 54893 broad.mit.edu 36 15 29056415 29056415 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017762 exon3 c.A157C p.K53Q . . . ARHGAP11A 9824 broad.mit.edu 36 15 30713496 30713496 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199357 exon10 c.C1306T p.R436C . . . FMN1 342184 broad.mit.edu 36 15 30878306 30878306 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103184 exon15 c.C3452A p.S1151Y . . . FMN1 342184 broad.mit.edu 36 15 31048577 31048577 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103184 exon4 c.G1948A p.A650T . . . RYR3 6263 broad.mit.edu 36 15 31742403 31742403 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon35 c.T5380G p.L1794V . . . RYR3 6263 broad.mit.edu 36 15 31834624 31834624 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon58 c.G8466A p.K2822K . . . RYR3 6263 broad.mit.edu 36 15 31859770 31859770 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon65 c.G9204A p.E3068E . . . CHRM5 1133 broad.mit.edu 36 15 32142594 32142594 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012125 exon3 c.T384C p.R128R . . . SLC12A6 9990 broad.mit.edu 36 15 32334766 32334766 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042497 exon6 c.G820T p.E274X . . . ZNF770 54989 broad.mit.edu 36 15 33062195 33062195 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014106 exon3 c.C733T p.R245W . . . ZNF770 54989 broad.mit.edu 36 15 33062666 33062666 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014106 exon3 c.C262T p.R88C . . . C15orf41 84529 broad.mit.edu 36 15 34737337 34737337 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130010 exon5 c.G285A p.A95A . . . MEIS2 4212 broad.mit.edu 36 15 34976127 34976127 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170676 exon10 c.C1030T p.R344X . . . FAM98B 283742 broad.mit.edu 36 15 36553072 36553072 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173611 exon5 c.A606G p.E202E . . . FSIP1 161835 broad.mit.edu 36 15 37697303 37697303 + Missense_Mutation SNP G C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152597 exon11 c.C1624G p.L542V . . . BUB1B 701 broad.mit.edu 36 15 38276166 38276166 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001211 exon9 c.T1187G p.M396R . . . DISP2 85455 broad.mit.edu 36 15 38449594 38449594 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033510 exon8 c.G3989A p.R1330Q . . . C15orf23 90417 broad.mit.edu 36 15 38473040 38473040 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033286 exon9 c.A901C p.N301H . . . C15orf57 90416 broad.mit.edu 36 15 38636804 38636804 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080792 exon3 c.C304T p.R102X . . . CASC5 57082 broad.mit.edu 36 15 38701297 38701297 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170589 exon11 c.G1621A p.E541K . . . SPTBN5 51332 broad.mit.edu 36 15 39934416 39934416 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016642 exon56 c.C9369A p.G3123G . . . VPS39 23339 broad.mit.edu 36 15 40266801 40266801 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015289 exon7 c.C494A p.S165Y . . . CDAN1 146059 broad.mit.edu 36 15 40808571 40808571 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138477 exon19 c.C2587T p.R863C . . . TMEM62 80021 broad.mit.edu 36 15 41213829 41213829 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024956 exon2 c.T263A p.I88N . . . TGM5 9333 broad.mit.edu 36 15 41332291 41332291 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004245 exon5 c.C574T p.R192C . . . TP53BP1 7158 broad.mit.edu 36 15 41526946 41526946 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005657 exon13 c.G2731T p.E911X . . . TP53BP1 7158 broad.mit.edu 36 15 41557176 41557176 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005657 exon8 c.G847T p.E283X . . . ELL3 80237 broad.mit.edu 36 15 41853695 41853695 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025165 exon9 c.C1015T p.R339W . . . EIF3J 8669 broad.mit.edu 36 15 42630926 42630926 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003758 exon4 c.A208C p.K70Q . . . SPG11 80208 broad.mit.edu 36 15 42677795 42677795 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon23 c.G3961T p.E1321X . . . SPG11 80208 broad.mit.edu 36 15 42713089 42713089 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon8 c.C1641A p.F547L . . . B2M 567 broad.mit.edu 36 15 42794933 42794933 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004048 exon2 c.T88C p.Y30H . . . TRIM69 140691 broad.mit.edu 36 15 42846948 42846948 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182985 exon7 c.G1189T p.E397X . . . SORD 6652 broad.mit.edu 36 15 43152984 43152984 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003104 exon9 c.C1038A p.I346I . . . DUOX2 50506 broad.mit.edu 36 15 43183464 43183464 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014080 exon20 c.C2640A p.F880L . . . FBN1 2200 broad.mit.edu 36 15 46675816 46675816 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon6 c.G494A p.R165Q . . . CEP152 22995 broad.mit.edu 36 15 46835850 46835850 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194998 exon20 c.G2887T p.E963X . . . CEP152 22995 broad.mit.edu 36 15 46875603 46875603 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194998 exon6 c.A587C p.K196T . . . CEP152 22995 broad.mit.edu 36 15 46885078 46885078 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194998 exon2 c.G61A p.E21K . . . C15orf33 196951 broad.mit.edu 36 15 47669364 47669364 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152647 exon4 c.G238A p.A80T . . . C15orf33 196951 broad.mit.edu 36 15 47690738 47690738 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152647 exon3 c.A71C p.K24T . . . SLC27A2 11001 broad.mit.edu 36 15 48306632 48306632 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159629 exon6 c.C1263A p.F421L . . . HDC 3067 broad.mit.edu 36 15 48321869 48321869 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002112 exon12 c.G1869T p.M623I . . . HDC 3067 broad.mit.edu 36 15 48322030 48322030 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002112 exon12 c.T1708C p.F570L . . . TRPM7 54822 broad.mit.edu 36 15 48678620 48678620 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017672 exon22 c.G3154T p.E1052X . . . GLDN 342035 broad.mit.edu 36 15 49479701 49479701 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181789 exon7 c.A838C p.N280H . . . LEO1 123169 broad.mit.edu 36 15 50026799 50026799 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138792 exon11 c.G1878T p.K626N . . . MYO5C 55930 broad.mit.edu 36 15 50324936 50324936 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018728 exon18 c.C2085A p.F695L . . . UNC13C 440279 broad.mit.edu 36 15 52586677 52586677 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon21 c.A5372G p.E1791G . . . PRTG 283659 broad.mit.edu 36 15 53763361 53763361 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173814 exon3 c.G458A p.R153Q . . . RNF111 54778 broad.mit.edu 36 15 57135330 57135330 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017610 exon4 c.G1165T p.E389X . . . RNF111 54778 broad.mit.edu 36 15 57146569 57146569 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017610 exon6 c.G1681T p.E561X . . . VPS13C 54832 broad.mit.edu 36 15 60043359 60043359 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017684 exon30 c.G3169A p.E1057K . . . VPS13C 54832 broad.mit.edu 36 15 60092603 60092603 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017684 exon9 c.G623A p.R208Q . . . LACTB 114294 broad.mit.edu 36 15 61220917 61220917 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032857 exon6 c.G1504T p.E502X . . . HERC1 8925 broad.mit.edu 36 15 61715243 61715243 + Silent SNP G A A rs2228509 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon65 c.C12384T p.I4128I . . . DENND4A 10260 broad.mit.edu 36 15 63769940 63769940 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon23 c.C4043A p.S1348X . . . TIPIN 54962 broad.mit.edu 36 15 64428502 64428502 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017858 exon6 c.G425A p.R142Q . . . IQCH 64799 broad.mit.edu 36 15 65451750 65451750 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031715 exon9 c.C1001T p.T334M . . . SKOR1 390598 broad.mit.edu 36 15 65911698 65911698 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031807 exon7 c.G2488A p.E830K . . . PIAS1 8554 broad.mit.edu 36 15 66256036 66256036 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016166 exon11 c.A1471C p.N491H . . . ITGA11 22801 broad.mit.edu 36 15 66441010 66441010 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004439 exon5 c.C444A p.F148L . . . CORO2B 10391 broad.mit.edu 36 15 66798821 66798821 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006091 exon11 c.C1187A p.S396Y . . . CLK3 1198 broad.mit.edu 36 15 72705344 72705344 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130028 exon7 c.C1243A p.L415I . . . CYP1A2 1544 broad.mit.edu 36 15 72829480 72829480 + Silent SNP C T T rs71541923 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000761 exon2 c.C348T p.L116L . . . C15orf27 123591 broad.mit.edu 36 15 74217124 74217124 + De_novo_Start_OutOfFrame SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152335 exon3 c.T60G p.I20M . . . SGK269 79834 broad.mit.edu 36 15 75194373 75194373 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024776 exon6 c.T4421G p.F1474C . . . RASGRF1 5923 broad.mit.edu 36 15 77064413 77064413 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002891 exon24 c.C3453A p.V1151V . . . RASGRF1 5923 broad.mit.edu 36 15 77126178 77126178 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002891 exon5 c.C843T p.I281I . . . BCL2A1 597 broad.mit.edu 36 15 78050105 78050105 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004049 exon1 c.G412T p.G138X . . . BCL2A1 597 broad.mit.edu 36 15 78050170 78050170 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004049 exon1 c.A347C p.K116T . . . TMC3 342125 broad.mit.edu 36 15 79441684 79441684 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080532 exon4 c.T326G p.F109C . . . FAM154B 283726 broad.mit.edu 36 15 80362123 80362123 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008226 exon3 c.G862T p.D288Y . . . ADAMTSL3 57188 broad.mit.edu 36 15 82430309 82430309 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon20 c.C2560T p.R854W . . . ADAMTSL3 57188 broad.mit.edu 36 15 82485135 82485135 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon27 c.T4599C p.P1533P . . . ZSCAN2 54993 broad.mit.edu 36 15 82965945 82965945 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181877 exon3 c.C1515T p.S505S . . . PLIN1 5346 broad.mit.edu 36 15 88021721 88021721 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002666 exon2 c.G4A p.A2T . . . ANPEP 290 broad.mit.edu 36 15 88149349 88149349 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001150 exon4 c.C861T p.F287F . . . TTLL13 440307 broad.mit.edu 36 15 88597561 88597561 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029964 exon4 c.C375T p.C125C . . . BLM 641 broad.mit.edu 36 15 89142473 89142473 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000057 exon17 c.T3260G p.F1087C . . . UNC45A 55898 broad.mit.edu 36 15 89283983 89283983 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039675 exon8 c.A400G p.T134A . . . CHD2 1106 broad.mit.edu 36 15 91346502 91346502 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001271 exon33 c.A4229C p.D1410A . . . LASS3 204219 broad.mit.edu 36 15 98833820 98833820 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178842 exon9 c.G603T p.K201N . . . LASS3 204219 broad.mit.edu 36 15 98848581 98848581 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178842 exon5 c.G252T p.E84D . . . ASB7 140460 broad.mit.edu 36 15 99006177 99006177 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198243 exon6 c.T944G p.F315C . . . PCSK6 5046 broad.mit.edu 36 15 99789169 99789169 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138322 exon4 c.G534A p.S178S . . . KIAA0895L 653319 broad.mit.edu 36 16 65771969 65771970 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040715 exon2 c.46_47insC p.S16fs . . . CDH15 1013 broad.mit.edu 36 16 87773428 87773429 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004933 exon2 c.146_147insC p.I49fs . . . CLEC16A 23274 broad.mit.edu 36 16 10978593 10978593 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015226 exon7 c.C739T p.R247W . . . PRM1 5619 broad.mit.edu 36 16 11282511 11282511 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002761 exon1 c.G86A p.S29N . . . RSL1D1 26156 broad.mit.edu 36 16 11849071 11849071 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015659 exon3 c.T339G p.F113L . . . MYH11 4629 broad.mit.edu 36 16 15759232 15759232 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon14 c.G1549A p.D517N . . . TMC5 79838 broad.mit.edu 36 16 19359419 19359419 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105248 exon3 c.G558T p.K186N . . . GDE1 51573 broad.mit.edu 36 16 19429674 19429674 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016641 exon3 c.C531T p.G177G . . . PDILT 204474 broad.mit.edu 36 16 20281257 20281257 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174924 exon10 c.C1386A p.F462L . . . ERN2 10595 broad.mit.edu 36 16 23629820 23629820 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033266 exon2 c.G258T p.E86D . . . CACNG3 10368 broad.mit.edu 36 16 24280305 24280305 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006539 exon4 c.G568T p.E190X . . . RBBP6 5930 broad.mit.edu 36 16 24489123 24489123 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018703 exon16 c.C3509T p.A1170V . . . ZKSCAN2 342357 broad.mit.edu 36 16 25165838 25165838 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012981 exon5 c.C1180T p.R394X . . . HS3ST4 9951 broad.mit.edu 36 16 26054562 26054562 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006040 exon2 c.G863T p.R288I . . . SEZ6L2 26470 broad.mit.edu 36 16 29814659 29814659 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201575 exon4 c.G535A p.E179K . . . ZNF200 7752 broad.mit.edu 36 16 3214571 3214571 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003454 exon5 c.A510T p.E170D . . . ABCC11 85320 broad.mit.edu 36 16 46802413 46802413 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon11 c.G1555T p.E519X . . . LONP2 83752 broad.mit.edu 36 16 46943097 46943097 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031490 exon15 c.C2442T p.N814N . . . N4BP1 9683 broad.mit.edu 36 16 47152730 47152730 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153029 exon2 c.T1325G p.F442C . . . N4BP1 9683 broad.mit.edu 36 16 47153473 47153473 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153029 exon2 c.G582A p.E194E . . . UBN1 29855 broad.mit.edu 36 16 4850872 4850872 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016936 exon6 c.T878G p.F293C . . . NOD2 64127 broad.mit.edu 36 16 49302299 49302299 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022162 exon4 c.C976A p.L326I . . . CHD9 80205 broad.mit.edu 36 16 51884348 51884348 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon29 c.A5393G p.N1798S . . . NLRC5 84166 broad.mit.edu 36 16 55673020 55673020 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon48 c.T5486C p.I1829T . . . RSPRY1 89970 broad.mit.edu 36 16 55804418 55804418 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133368 exon5 c.T550G p.L184V . . . TSNAXIP1 55815 broad.mit.edu 36 16 66415997 66415997 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018430 exon6 c.G330T p.R110S . . . CDH1 999 broad.mit.edu 36 16 67414808 67414808 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004360 exon13 c.G1942T p.E648X . . . COG4 25839 broad.mit.edu 36 16 69109050 69109050 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015386 exon3 c.C349T p.R117C . . . SF3B3 23450 broad.mit.edu 36 16 69139831 69139831 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012426 exon11 c.C1387T p.R463C . . . HYDIN 54768 broad.mit.edu 36 16 69776304 69776304 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon3 c.G226A p.E76K . . . ZNF23 7571 broad.mit.edu 36 16 70040194 70040194 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145911 exon6 c.G1235T p.R412I . . . ADAMTS18 170692 broad.mit.edu 36 16 75911336 75911336 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon16 c.G2443A p.A815T . . . ADAMTS18 170692 broad.mit.edu 36 16 75945222 75945222 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon10 c.A1523C p.D508A . . . CDH13 1012 broad.mit.edu 36 16 82077746 82077746 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001257 exon7 c.G945A p.A315A . . . ATP2C2 9914 broad.mit.edu 36 16 83013775 83013775 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014861 exon9 c.G814T p.E272X . . . FAM92B 339145 broad.mit.edu 36 16 83693426 83693426 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198491 exon6 c.T546G p.F182L . . . ANKRD11 29123 broad.mit.edu 36 16 87876530 87876530 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.C3921T p.S1307S . . . PRDM7 11105 broad.mit.edu 36 16 88654344 88654344 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098173 exon9 c.C1139T p.A380V . . . GRIN2A 2903 broad.mit.edu 36 16 9765158 9765158 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134408 exon13 c.C3744T p.I1248I . . . MYH13 8735 broad.mit.edu 36 17 10168070 10168070 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon23 c.G2928T p.E976D . . . MYH2 4620 broad.mit.edu 36 17 10384720 10384720 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100112 exon11 c.G924T p.T308T . . . DNAH9 1770 broad.mit.edu 36 17 11496857 11496857 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon14 c.G2408T p.R803I . . . ZNF624 57547 broad.mit.edu 36 17 16467736 16467736 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020787 exon6 c.T1189G p.F397V . . . KCNJ12 3768 broad.mit.edu 36 17 21260276 21260276 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021012 exon3 c.G1029A p.S343S . . . SRR 63826 broad.mit.edu 36 17 2171356 2171356 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021947 exon5 c.G406T p.E136X . . . TSR1 55720 broad.mit.edu 36 17 2184749 2184749 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018128 exon5 c.C748T p.R250W . . . METT10D 79066 broad.mit.edu 36 17 2291565 2291565 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon7 c.C767T p.A256V . . . EFCAB5 374786 broad.mit.edu 36 17 25320160 25320160 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145053 exon4 c.T248G p.L83R . . . CPD 1362 broad.mit.edu 36 17 25813575 25813575 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199775 exon20 c.T3137G p.I1046R . . . ATAD5 79915 broad.mit.edu 36 17 26185964 26185964 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024857 exon2 c.A739C p.N247H . . . C17orf42 79736 broad.mit.edu 36 17 26250568 26250568 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024683 exon4 c.G828T p.M276I . . . NF1 4763 broad.mit.edu 36 17 26581017 26581017 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000267 exon22 c.A2889C p.Q963H . . . EVI2B 2124 broad.mit.edu 36 17 26655506 26655506 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006495 exon2 c.T1248G p.D416E . . . EVI2B 2124 broad.mit.edu 36 17 26656154 26656154 + Nonsense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006495 exon2 c.T600G p.Y200X . . . SUZ12 23512 broad.mit.edu 36 17 27334133 27334133 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015355 exon9 c.G920A p.R307H . . . C17orf75 64149 broad.mit.edu 36 17 27683054 27683054 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022344 exon10 c.T1032G p.H344Q . . . MYO1D 4642 broad.mit.edu 36 17 28118862 28118862 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015194 exon7 c.G736A p.E246K . . . CCT6B 10693 broad.mit.edu 36 17 30293617 30293617 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193529 exon6 c.A773C p.K258T . . . SLFN5 162394 broad.mit.edu 36 17 30615411 30615411 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144975 exon4 c.G1235A p.R412H . . . SLFN13 146857 broad.mit.edu 36 17 30792090 30792090 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144682 exon6 c.A2331C p.T777T . . . GAS2L2 246176 broad.mit.edu 36 17 31097335 31097335 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139285 exon6 c.G1294A p.A432T . . . GPR179 440435 broad.mit.edu 36 17 33739329 33739329 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.G3649T p.E1217X . . . TRPV3 162514 broad.mit.edu 36 17 3374349 3374349 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145068 exon13 c.G1636T p.E546X . . . FBXO47 494188 broad.mit.edu 36 17 34372639 34372639 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008777 exon2 c.T166G p.L56V . . . PLXDC1 57125 broad.mit.edu 36 17 34488923 34488923 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020405 exon10 c.G1010A p.R337H . . . CDK12 51755 broad.mit.edu 36 17 34919488 34919488 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016507 exon7 c.C2614T p.Q872X . . . IKZF3 22806 broad.mit.edu 36 17 35202501 35202501 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183230 exon4 c.A375G p.L125L . . . TOP2A 7153 broad.mit.edu 36 17 35810340 35810340 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001067 exon22 c.A2766C p.E922D . . . CCR7 1236 broad.mit.edu 36 17 35965497 35965497 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001838 exon3 c.C160T p.R54W . . . KRT37 8688 broad.mit.edu 36 17 36834015 36834015 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003770 exon1 c.G287A p.G96D . . . KRT9 3857 broad.mit.edu 36 17 36978156 36978156 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000226 exon6 c.C1178T p.A393V . . . TTC25 83538 broad.mit.edu 36 17 37348448 37348448 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031421 exon6 c.C738T p.Y246Y . . . DHX58 79132 broad.mit.edu 36 17 37510579 37510579 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024119 exon10 c.G1384T p.E462X . . . RND2 8153 broad.mit.edu 36 17 38433674 38433674 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005440 exon4 c.G371A p.R124Q . . . ZZEF1 23140 broad.mit.edu 36 17 3909284 3909284 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon31 c.C4933T p.R1645X . . . NAGS 162417 broad.mit.edu 36 17 39441442 39441442 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153006 exon7 c.G1552A p.A518T . . . MAP3K14 9020 broad.mit.edu 36 17 40722394 40722394 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003954 exon3 c.A317C p.K106T . . . MAPT 4137 broad.mit.edu 36 17 41395563 41395563 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016834 exon2 c.C24T p.F8F . . . CDC27 996 broad.mit.edu 36 17 42571111 42571111 + Missense_Mutation SNP G A A rs2871714 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114091 exon13 c.C1715T p.S572L . . . ITGB3 3690 broad.mit.edu 36 17 42716952 42716952 + Missense_Mutation SNP G A A rs5917 byCluster;byFrequency;byHapMap TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000212 exon4 c.G506A p.R169Q . . . C17orf57 124989 broad.mit.edu 36 17 42793850 42793850 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152347 exon10 c.A769G p.I257V . . . MYST2 11143 broad.mit.edu 36 17 45230854 45230854 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007067 exon4 c.G515A p.R172H . . . TOB1 10140 broad.mit.edu 36 17 46295589 46295589 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005749 exon1 c.A789C p.K263N . . . SPAG9 9043 broad.mit.edu 36 17 46426213 46426213 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003971 exon18 c.T2267G p.V756G . . . GP1BA 2811 broad.mit.edu 36 17 4777270 4777270 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000173 exon2 c.G591A p.E197E . . . KIF2B 84643 broad.mit.edu 36 17 49256812 49256812 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032559 exon1 c.G1419T p.K473N . . . ZFP3 124961 broad.mit.edu 36 17 4936273 4936273 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153018 exon2 c.G750T p.E250D . . . USP6 9098 broad.mit.edu 36 17 4992670 4992670 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004505 exon22 c.A2527G p.T843A . . . STXBP4 252983 broad.mit.edu 36 17 50479455 50479455 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178509 exon12 c.T952G p.L318V . . . NUP88 4927 broad.mit.edu 36 17 5249240 5249240 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002532 exon6 c.C905T p.A302V . . . MPO 4353 broad.mit.edu 36 17 53708036 53708036 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000250 exon8 c.G1231A p.E411K . . . NLRP1 22861 broad.mit.edu 36 17 5402526 5402526 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon4 c.C2214T p.F738F . . . NLRP1 22861 broad.mit.edu 36 17 5402853 5402853 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon4 c.C1887A p.F629L . . . PPM1E 22843 broad.mit.edu 36 17 54404983 54404983 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014906 exon6 c.G1125T p.K375N . . . PPM1E 22843 broad.mit.edu 36 17 54412700 54412700 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014906 exon7 c.G1794T p.K598N . . . C17orf71 55181 broad.mit.edu 36 17 54642925 54642925 + Missense_Mutation SNP C G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018149 exon1 c.C731G p.A244G . . . C17orf71 55181 broad.mit.edu 36 17 54643123 54643123 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018149 exon1 c.G929T p.R310I . . . USP32 84669 broad.mit.edu 36 17 55615538 55615538 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032582 exon31 c.T3893G p.I1298S . . . DCAF7 10238 broad.mit.edu 36 17 59009564 59009564 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005828 exon2 c.T140C p.V47A . . . DDX42 11325 broad.mit.edu 36 17 59240730 59240730 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203499 exon11 c.C1231T p.R411X . . . FTSJ3 117246 broad.mit.edu 36 17 59256221 59256221 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017647 exon8 c.C630A p.F210L . . . GH1 2688 broad.mit.edu 36 17 59349482 59349482 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022560 exon2 c.G127A p.A43T . . . SCN4A 6329 broad.mit.edu 36 17 59376689 59376689 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000334 exon19 c.G3483T p.M1161I . . . CCDC45 90799 broad.mit.edu 36 17 59958497 59958497 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138363 exon14 c.C1567T p.R523C . . . RGS9 8787 broad.mit.edu 36 17 60634527 60634527 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003835 exon16 c.C1229A p.S410Y . . . NOL11 25926 broad.mit.edu 36 17 63164232 63164232 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015462 exon12 c.T1365G p.C455W . . . ABCA8 10351 broad.mit.edu 36 17 64392082 64392082 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon26 c.T3480C p.F1160F . . . ABCA9 10350 broad.mit.edu 36 17 64498610 64498610 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon29 c.G3800A p.R1267K . . . KIAA0753 9851 broad.mit.edu 36 17 6467096 6467096 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014804 exon6 c.C934T p.R312W . . . ABCA10 10349 broad.mit.edu 36 17 64695541 64695541 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080282 exon20 c.C2206A p.L736I . . . TEKT1 83659 broad.mit.edu 36 17 6644956 6644956 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053285 exon7 c.A883C p.N295H . . . GPS2 2874 broad.mit.edu 36 17 7158347 7158347 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004489 exon4 c.C304T p.R102X . . . ST6GALNAC2 10610 broad.mit.edu 36 17 72086446 72086446 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006456 exon2 c.C173T p.S58F . . . TNRC6C 57690 broad.mit.edu 36 17 73600769 73600769 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018996 exon16 c.C4131A p.I1377I . . . FXR2 9513 broad.mit.edu 36 17 7437508 7437508 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004860 exon12 c.G1268A p.R423Q . . . SHBG 6462 broad.mit.edu 36 17 7476022 7476022 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040 exon6 c.G816T p.E272D . . . RPTOR 57521 broad.mit.edu 36 17 76318972 76318972 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020761 exon5 c.C525T p.I175I . . . KRBA2 124751 broad.mit.edu 36 17 8215425 8215425 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213597 exon1 c.T153G p.N51K . . . NDEL1 81565 broad.mit.edu 36 17 8307370 8307370 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025579 exon9 c.A952C p.K318Q . . . STX8 9482 broad.mit.edu 36 17 9412499 9412499 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004853 exon2 c.G31A p.D11N . . . SEH1L 81929 broad.mit.edu 36 18 12974076 12974076 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013437 exon8 c.G957T p.L319F . . . RNMT 8731 broad.mit.edu 36 18 13721605 13721605 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003799 exon3 c.T89G p.F30C . . . MC5R 4161 broad.mit.edu 36 18 13815953 13815953 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005913 exon1 c.G189T p.K63N . . . ROCK1 6093 broad.mit.edu 36 18 16944793 16944793 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005406 exon1 c.A77C p.N26T . . . ESCO1 114799 broad.mit.edu 36 18 17407780 17407780 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052911 exon4 c.G1023T p.L341F . . . ZNF521 25925 broad.mit.edu 36 18 21058541 21058541 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015461 exon4 c.G3339T p.T1113T . . . CHST9 83539 broad.mit.edu 36 18 22751264 22751264 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031422 exon6 c.C289A p.L97I . . . DSC1 1823 broad.mit.edu 36 18 26968671 26968671 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004948 exon12 c.G1738T p.E580X . . . DSG4 147409 broad.mit.edu 36 18 27226224 27226224 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134453 exon8 c.C928A p.L310I . . . FAM59A 64762 broad.mit.edu 36 18 28121436 28121436 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022751 exon4 c.C1122T p.Y374Y . . . ASXL3 80816 broad.mit.edu 36 18 29578229 29578229 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030632 exon12 c.C4419A p.V1473V . . . ZSCAN30 100101467 broad.mit.edu 36 18 31087935 31087935 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112734 exon4 c.G962T p.R321I . . . MOCOS 55034 broad.mit.edu 36 18 32047364 32047364 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017947 exon7 c.G1256A p.R419Q . . . SETBP1 26040 broad.mit.edu 36 18 40785725 40785725 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015559 exon4 c.C2422A p.L808I . . . KIAA1632 57724 broad.mit.edu 36 18 41713163 41713163 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020964 exon33 c.A5682G p.I1894M . . . TCEB3B 51224 broad.mit.edu 36 18 42814388 42814388 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016427 exon1 c.G1246A p.E416K . . . KATNAL2 83473 broad.mit.edu 36 18 42838716 42838716 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031303 exon4 c.A229C p.N77H . . . MBD2 8932 broad.mit.edu 36 18 49985391 49985391 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015832 exon2 c.G677A p.R226Q . . . C18orf54 162681 broad.mit.edu 36 18 50154599 50154599 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173529 exon7 c.C993A p.F331L . . . CCDC68 80323 broad.mit.edu 36 18 50726085 50726085 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143829 exon11 c.G880T p.E294X . . . TCF4 6925 broad.mit.edu 36 18 51088152 51088152 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083962 exon11 c.T830G p.L277R . . . NARS 4677 broad.mit.edu 36 18 53424957 53424957 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004539 exon10 c.T1026C p.C342C . . . ATP8B1 5205 broad.mit.edu 36 18 53470291 53470291 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005603 exon26 c.C3373A p.L1125I . . . MC4R 4160 broad.mit.edu 36 18 56190201 56190201 + Missense_Mutation SNP A C C rs13447330 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005912 exon1 c.T362G p.I121S . . . CDH20 28316 broad.mit.edu 36 18 57354807 57354807 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031891 exon7 c.C1373A p.S458Y . . . TNFRSF11A 8792 broad.mit.edu 36 18 58166437 58166437 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003839 exon2 c.A132G p.G44G . . . SERPINB12 89777 broad.mit.edu 36 18 59383704 59383704 + Missense_Mutation SNP G T T rs34833530 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080474 exon6 c.G692T p.R231I . . . SERPINB13 5275 broad.mit.edu 36 18 59412676 59412676 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012397 exon6 c.G580T p.E194X . . . RTTN 25914 broad.mit.edu 36 18 65968832 65968832 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173630 exon15 c.G2047A p.E683K . . . LAMA1 284217 broad.mit.edu 36 18 6949369 6949369 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon54 c.G7749A p.A2583A . . . ZNF407 55628 broad.mit.edu 36 18 70472686 70472686 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146190 exon1 c.G723T p.Q241H . . . ZNF407 55628 broad.mit.edu 36 18 70473377 70473377 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146190 exon1 c.G1414A p.D472N . . . ZNF407 55628 broad.mit.edu 36 18 70473904 70473904 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146190 exon1 c.G1941T p.K647N . . . ZNF407 55628 broad.mit.edu 36 18 70904629 70904629 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017757 exon8 c.C5964T p.A1988A . . . LRRC30 339291 broad.mit.edu 36 18 7221358 7221358 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105581 exon1 c.G222T p.Q74H . . . ADNP2 22850 broad.mit.edu 36 18 75995040 75995040 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014913 exon4 c.T753G p.I251M . . . PTPRM 5797 broad.mit.edu 36 18 7878350 7878350 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon3 c.G443T p.S148I . . . ANKRD12 23253 broad.mit.edu 36 18 9245359 9245359 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon9 c.G2094T p.E698D . . . ANKRD12 23253 broad.mit.edu 36 18 9265530 9265530 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon11 c.C5772A p.L1924L . . . LOC729991-MEF2B 4207 broad.mit.edu 36 19 19118365 19118366 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145785 exon7 c.768_769insC p.P256fs . . . RGL3 57139 broad.mit.edu 36 19 11369132 11369132 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161616 exon17 c.C1906T p.R636X . . . ZNF491 126069 broad.mit.edu 36 19 11778068 11778068 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.G300T p.E100D . . . ZNF700 90592 broad.mit.edu 36 19 11920355 11920355 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144566 exon4 c.G516T p.K172N . . . ZNF878 729747 broad.mit.edu 36 19 12016891 12016891 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080404 exon5 c.G466T p.E156X . . . ZNF625 90589 broad.mit.edu 36 19 12117528 12117528 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145233 exon4 c.C505T p.R169X . . . ZNF563 147837 broad.mit.edu 36 19 12294451 12294451 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145276 exon2 c.G78T p.K26N . . . MAN2B1 4125 broad.mit.edu 36 19 12619323 12619323 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000528 exon22 c.G2754A p.E918E . . . PRDX2 7001 broad.mit.edu 36 19 12771788 12771788 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005809 exon5 c.C396T p.I132I . . . CACNA1A 773 broad.mit.edu 36 19 13226981 13226981 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174080 exon29 c.C4686T p.F1562F . . . RPS15 6209 broad.mit.edu 36 19 1391147 1391147 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018 exon3 c.G219A p.P73P . . . PRKACA 5566 broad.mit.edu 36 19 14064926 14064926 + Nonstop_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002730 exon10 c.T1054C p.X352Q . . . EMR3 84658 broad.mit.edu 36 19 14633866 14633866 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032571 exon4 c.C264T p.V88V . . . OR7C2 26658 broad.mit.edu 36 19 14913891 14913891 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012377 exon1 c.C591T p.I197I . . . NOTCH3 4854 broad.mit.edu 36 19 15137215 15137215 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000435 exon31 c.G5779A p.A1927T . . . CYP4F22 126410 broad.mit.edu 36 19 15515824 15515824 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173483 exon9 c.G982A p.E328K . . . CYP4F12 66002 broad.mit.edu 36 19 15655313 15655313 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023944 exon7 c.G658T p.E220X . . . CALR3 125972 broad.mit.edu 36 19 16462326 16462326 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145046 exon3 c.G249A p.P83P . . . TMEM38A 79041 broad.mit.edu 36 19 16652313 16652313 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024074 exon3 c.G387T p.K129N TMEM38A,central_nervous_system,brain,Substitution - coding silent,0 . . FAM129C 199786 broad.mit.edu 36 19 17525141 17525141 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173544 exon16 c.G1863A p.V621V . . . UNC13A 23025 broad.mit.edu 36 19 17617824 17617824 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon17 c.C2141A p.T714N . . . ZNF506 440515 broad.mit.edu 36 19 19766706 19766706 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145404 exon3 c.A894G p.K298K . . . ZNF506 440515 broad.mit.edu 36 19 19767181 19767181 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145404 exon3 c.C419A p.S140Y . . . ZNF626 199777 broad.mit.edu 36 19 20599777 20599777 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076675 exon4 c.G746T p.R249I . . . ZNF714 148206 broad.mit.edu 36 19 21092394 21092394 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182515 exon5 c.C1084A p.H362N . . . ZNF493 284443 broad.mit.edu 36 19 21399010 21399010 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175910 exon2 c.A1325G p.H442R . . . ZNF429 353088 broad.mit.edu 36 19 21504366 21504366 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001415 exon2 c.G70A p.A24T . . . ZNF429 353088 broad.mit.edu 36 19 21511357 21511357 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001415 exon4 c.G662T p.R221I . . . ZNF100 163227 broad.mit.edu 36 19 21702028 21702028 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173531 exon5 c.G926T p.R309I . . . ZNF208 7757 broad.mit.edu 36 19 21946973 21946973 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007153 exon4 c.C2703A p.F901L . . . ZNF208 7757 broad.mit.edu 36 19 21949190 21949190 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007153 exon4 c.A486G p.R162R . . . ZNF98 148198 broad.mit.edu 36 19 22366432 22366432 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098626 exon4 c.T1445C p.V482A . . . ZNF99 7652 broad.mit.edu 36 19 22732368 22732368 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080409 exon5 c.C1910A p.T637N . . . ZNF99 7652 broad.mit.edu 36 19 22732826 22732826 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080409 exon5 c.G1452T p.K484N . . . ZNF99 7652 broad.mit.edu 36 19 22733182 22733182 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080409 exon5 c.G1096T p.E366X . . . ZNF91 7644 broad.mit.edu 36 19 23336623 23336623 + Missense_Mutation SNP C T T rs410211 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003430 exon4 c.G998A p.R333H . . . ZNF675 171392 broad.mit.edu 36 19 23627993 23627993 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138330 exon4 c.A1582C p.I528L . . . ZNF681 148213 broad.mit.edu 36 19 23719964 23719964 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138286 exon4 c.T228G p.V76V . . . C19orf2 8725 broad.mit.edu 36 19 35169062 35169062 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003796 exon4 c.A265C p.K89Q . . . GPATCH1 55094 broad.mit.edu 36 19 38292519 38292519 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018025 exon11 c.G1342T p.E448X . . . ITGB1BP3 27231 broad.mit.edu 36 19 3892108 3892108 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170678 exon7 c.C435T p.F145F . . . LSM14A 26065 broad.mit.edu 36 19 39391740 39391740 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114093 exon4 c.C482T p.A161V . . . ZNF181 339318 broad.mit.edu 36 19 39924652 39924652 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145665 exon4 c.G1523T p.R508I . . . ZNF599 148103 broad.mit.edu 36 19 39942242 39942242 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007248 exon4 c.G1304A p.S435N . . . ZNF599 148103 broad.mit.edu 36 19 39943102 39943102 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007248 exon4 c.G444T p.E148D . . . NPHS1 4868 broad.mit.edu 36 19 41031440 41031440 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004646 exon9 c.T1109C p.V370A . . . ZFP14 57677 broad.mit.edu 36 19 41524076 41524076 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020917 exon5 c.C492T p.I164I . . . ANKRD24 170961 broad.mit.edu 36 19 4168067 4168067 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133475 exon18 c.C1910T p.A637V . . . ZNF382 84911 broad.mit.edu 36 19 41810104 41810104 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032825 exon5 c.G1465T p.E489X . . . ZNF790 388536 broad.mit.edu 36 19 42001324 42001324 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206894 exon5 c.C1762A p.L588I . . . ZNF568 374900 broad.mit.edu 36 19 42119572 42119572 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198539 exon5 c.C220T p.R74X . . . ZNF585A 199704 broad.mit.edu 36 19 42334512 42334512 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G1964A p.R655Q . . . ZNF585A 199704 broad.mit.edu 36 19 42335249 42335249 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G1227T p.K409N . . . ZNF569 148266 broad.mit.edu 36 19 42595377 42595377 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152484 exon6 c.T2023C p.S675P . . . ZNF569 148266 broad.mit.edu 36 19 42596425 42596425 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152484 exon6 c.T975G p.P325P . . . ZNF793 390927 broad.mit.edu 36 19 42715107 42715107 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013659 exon6 c.T25C p.S9P . . . ZNF571 51276 broad.mit.edu 36 19 42748358 42748358 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016536 exon4 c.G812T p.R271I . . . ZNF540 163255 broad.mit.edu 36 19 42794355 42794355 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152606 exon5 c.C334T p.R112C . . . ZNF540 163255 broad.mit.edu 36 19 42795570 42795570 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152606 exon5 c.C1549A p.H517N . . . ZNF781 163115 broad.mit.edu 36 19 42852061 42852061 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152605 exon4 c.G829T p.E277X . . . ZNF573 126231 broad.mit.edu 36 19 42922518 42922518 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172691 exon5 c.G707T p.R236I . . . RYR1 6261 broad.mit.edu 36 19 43697568 43697568 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon64 c.A9535G p.K3179E . . . DLL3 10683 broad.mit.edu 36 19 44683116 44683116 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203486 exon3 c.G373A p.E125K . . . LGALS14 56891 broad.mit.edu 36 19 44889150 44889150 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020129 exon2 c.T89G p.F30C . . . LYPD4 147719 broad.mit.edu 36 19 47033902 47033902 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173506 exon4 c.C485A p.S162Y . . . ATP1A3 478 broad.mit.edu 36 19 47174266 47174266 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152296 exon13 c.C1683T p.F561F . . . POU2F2 5452 broad.mit.edu 36 19 47318365 47318365 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002698 exon3 c.G100A p.E34K . . . CEACAM8 1088 broad.mit.edu 36 19 47785599 47785599 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001816 exon3 c.C553A p.L185I . . . PSG6 5675 broad.mit.edu 36 19 48221001 48221001 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002785 exon2 c.A112C p.I38L . . . PSG4 5672 broad.mit.edu 36 19 48391070 48391070 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002780 exon4 c.G905A p.R302K . . . ZNF404 342908 broad.mit.edu 36 19 49070011 49070011 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033719 exon2 c.A186G p.V62V . . . ZNF224 7767 broad.mit.edu 36 19 49303236 49303236 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013398 exon6 c.G1083A p.T361T . . . ZNF235 9310 broad.mit.edu 36 19 49484989 49484989 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004234 exon5 c.G439T p.E147X . . . ZNF229 7772 broad.mit.edu 36 19 49625991 49625991 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014518 exon6 c.G805A p.E269K . . . ZNF180 7733 broad.mit.edu 36 19 49672916 49672916 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.G1622T p.R541I . . . PNMAL1 55228 broad.mit.edu 36 19 51665838 51665838 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018215 exon2 c.G295T p.D99Y . . . ZC3H4 23211 broad.mit.edu 36 19 52289176 52289176 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015168 exon4 c.G383A p.R128H . . . NAPA 8775 broad.mit.edu 36 19 52698543 52698543 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003827 exon2 c.G127A p.E43K . . . PLA2G4C 8605 broad.mit.edu 36 19 53257078 53257078 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159323 exon14 c.G1246A p.D416N . . . CCDC114 93233 broad.mit.edu 36 19 53493104 53493104 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144577 exon12 c.G1356A p.P452P . . . LMTK3 114783 broad.mit.edu 36 19 53696450 53696450 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080434 exon10 c.G990T p.E330D . . . KLK12 43849 broad.mit.edu 36 19 56224404 56224404 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145894 exon6 c.T713C p.V238A . . . CD33 945 broad.mit.edu 36 19 56420423 56420423 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001772 exon2 c.T175G p.Y59D . . . SIGLEC12 89858 broad.mit.edu 36 19 56692437 56692437 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033329 exon5 c.T1126C p.Y376H . . . SIGLEC12 89858 broad.mit.edu 36 19 56695374 56695374 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033329 exon1 c.C66A p.F22L . . . TMEM146 257062 broad.mit.edu 36 19 5696965 5696965 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152784 exon9 c.C699T p.F233F . . . ZNF613 79898 broad.mit.edu 36 19 57139372 57139372 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024840 exon6 c.T316G p.L106V . . . ZNF614 80110 broad.mit.edu 36 19 57211199 57211199 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025040 exon5 c.C1464T p.C488C . . . ZNF836 162962 broad.mit.edu 36 19 57350133 57350133 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102657 exon5 c.G2615A p.G872E . . . ZNF836 162962 broad.mit.edu 36 19 57350916 57350916 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102657 exon5 c.A1832C p.K611T . . . ZNF610 162963 broad.mit.edu 36 19 57560915 57560915 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173530 exon6 c.C472T p.R158C . . . ZNF578 147660 broad.mit.edu 36 19 57706990 57706990 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099694 exon6 c.A1544C p.E515A . . . ZNF808 388558 broad.mit.edu 36 19 57750488 57750488 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039886 exon5 c.G2507A p.R836H . . . ZNF611 81856 broad.mit.edu 36 19 57901536 57901536 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161501 exon5 c.G377T p.R126I . . . ZNF28 7576 broad.mit.edu 36 19 57994846 57994846 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006969 exon4 c.G2064T p.E688D . . . ZNF816 125893 broad.mit.edu 36 19 58146418 58146418 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031665 exon5 c.G422A p.R141Q . . . ZNF677 342926 broad.mit.edu 36 19 58432964 58432964 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182609 exon5 c.G828A p.S276S . . . NLRP12 91662 broad.mit.edu 36 19 59005836 59005836 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144687 exon3 c.G889A p.D297N . . . LILRA4 23547 broad.mit.edu 36 19 59536820 59536820 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012276 exon8 c.G1335T p.E445D . . . NLRP7 199713 broad.mit.edu 36 19 60144734 60144734 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139176 exon2 c.A158C p.K53T . . . NLRP9 338321 broad.mit.edu 36 19 60933055 60933055 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176820 exon3 c.C1948A p.L650I . . . NLRP11 204801 broad.mit.edu 36 19 60988891 60988891 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon12 c.A3014C p.N1005T . . . NLRP4 147945 broad.mit.edu 36 19 61062294 61062294 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon3 c.G1723T p.E575X . . . NLRP13 126204 broad.mit.edu 36 19 61113845 61113845 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176810 exon6 c.G2178T p.E726D NLRP13,lung,NS,Substitution - Missense,-2 . . ACSBG2 81616 broad.mit.edu 36 19 6133780 6133780 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030924 exon9 c.C925A p.L309I . . . ZNF583 147949 broad.mit.edu 36 19 61626980 61626980 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159860 exon5 c.G1141A p.E381K . . . ZNF583 147949 broad.mit.edu 36 19 61627458 61627458 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159860 exon5 c.G1619T p.R540I . . . ZNF471 57573 broad.mit.edu 36 19 61728432 61728432 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.G1184T p.R395I . . . ZNF471 57573 broad.mit.edu 36 19 61728768 61728768 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.G1520T p.R507I . . . ZNF470 388566 broad.mit.edu 36 19 61780859 61780859 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001668 exon6 c.G1250T p.R417I . . . ZNF470 388566 broad.mit.edu 36 19 61781531 61781531 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001668 exon6 c.G1922T p.R641I . . . PEG3 5178 broad.mit.edu 36 19 62019027 62019027 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146186 exon7 c.C2595A p.I865I . . . USP29 57663 broad.mit.edu 36 19 62333571 62333571 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020903 exon4 c.G1716T p.E572D . . . USP29 57663 broad.mit.edu 36 19 62334605 62334605 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020903 exon4 c.C2750A p.S917Y . . . ZIM3 114026 broad.mit.edu 36 19 62339210 62339210 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon5 c.G307T p.E103X . . . ZNF547 284306 broad.mit.edu 36 19 62575022 62575022 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173631 exon3 c.G85A p.D29N . . . ZNF749 388567 broad.mit.edu 36 19 62648139 62648139 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001023561 exon3 c.G1811T p.R604I . . . ZIK1 284307 broad.mit.edu 36 19 62794087 62794087 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010879 exon4 c.C1096A p.L366I . . . ZNF530 348327 broad.mit.edu 36 19 62809127 62809127 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020880 exon3 c.A422G p.N141S . . . ZNF154 7710 broad.mit.edu 36 19 62905177 62905177 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085384 exon3 c.G952T p.E318X . . . ZNF671 79891 broad.mit.edu 36 19 62923723 62923723 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024833 exon4 c.G1543T p.E515X . . . ZNF544 27300 broad.mit.edu 36 19 63464361 63464361 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014480 exon7 c.G577T p.E193X . . . ZNF584 201514 broad.mit.edu 36 19 63620017 63620017 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173548 exon4 c.G320A p.R107K . . . MZF1 7593 broad.mit.edu 36 19 63772754 63772754 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198055 exon4 c.T592G p.S198A . . . FBN3 84467 broad.mit.edu 36 19 8089824 8089824 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032447 exon25 c.T3294C p.C1098C . . . PRAM1 84106 broad.mit.edu 36 19 8469890 8469890 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032152 exon2 c.G802A p.A268T . . . MUC16 94025 broad.mit.edu 36 19 8909443 8909443 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon5 c.C33188A p.S11063Y . . . MUC16 94025 broad.mit.edu 36 19 8911212 8911212 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon5 c.G31419T p.E10473D . . . MUC16 94025 broad.mit.edu 36 19 8926503 8926503 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.T21943C p.S7315P . . . MUC16 94025 broad.mit.edu 36 19 8934357 8934357 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.G14089T p.D4697Y . . . ZNF560 147741 broad.mit.edu 36 19 9439100 9439100 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152476 exon10 c.G1523A p.R508K . . . ZNF121 7675 broad.mit.edu 36 19 9538536 9538536 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008727 exon4 c.G253A p.D85N . . . ZNF846 162993 broad.mit.edu 36 19 9729848 9729848 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077624 exon6 c.G905T p.R302I . . . CDC14A 8556 broad.mit.edu 36 1 100591931 100591931 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033312 exon2 c.G75T p.R25S . . . CDC14A 8556 broad.mit.edu 36 1 100722585 100722585 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033312 exon11 c.G1127A p.R376Q . . . VCAM1 7412 broad.mit.edu 36 1 100972820 100972820 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199834 exon8 c.G1781A p.R594Q . . . S1PR1 1901 broad.mit.edu 36 1 101477618 101477618 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001400 exon2 c.A490G p.I164V . . . COL11A1 1301 broad.mit.edu 36 1 103125091 103125091 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon63 c.C4718T p.S1573L . . . AMY2B 280 broad.mit.edu 36 1 103918031 103918031 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020978 exon6 c.A692C p.N231T . . . SORT1 6272 broad.mit.edu 36 1 109711613 109711613 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002959 exon3 c.T380C p.L127S . . . RBM15 64783 broad.mit.edu 36 1 110685138 110685138 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022768 exon1 c.G1588A p.E530K . . . MTOR 2475 broad.mit.edu 36 1 11091949 11091949 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon56 c.C7513T p.R2505X FRAP1,kidney,NS,Substitution - Missense,+1 . . KCNA3 3738 broad.mit.edu 36 1 111017526 111017526 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002232 exon1 c.C1429T p.P477S . . . SYT6 148281 broad.mit.edu 36 1 114482072 114482072 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205848 exon3 c.G384T p.K128N . . . AMPD1 270 broad.mit.edu 36 1 115020129 115020129 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000036 exon11 c.G1506T p.K502N . . . NRAS 4893 broad.mit.edu 36 1 115058052 115058052 + Missense_Mutation SNP T C C rs11554290 byHapMap TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002524 exon3 c.A182G p.Q61R NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 . . TSHB 7252 broad.mit.edu 36 1 115378253 115378253 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000549 exon3 c.C299A p.A100D . . . CASQ2 845 broad.mit.edu 36 1 116077066 116077066 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001232 exon5 c.C585A p.F195L . . . FBXO6 26270 broad.mit.edu 36 1 11651469 11651469 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018438 exon2 c.G167A p.R56H . . . CD101 9398 broad.mit.edu 36 1 117361610 117361610 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004258 exon5 c.A1604C p.K535T . . . CD101 9398 broad.mit.edu 36 1 117366107 117366107 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004258 exon7 c.G2407T p.E803X . . . TBX15 6913 broad.mit.edu 36 1 119267700 119267700 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152380 exon5 c.G425A p.R142H . . . NOTCH2 4853 broad.mit.edu 36 1 120264498 120264498 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024408 exon30 c.C5356T p.R1786X . . . PRDM2 7799 broad.mit.edu 36 1 13980189 13980189 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007257 exon3 c.A2709C p.E903D . . . LIX1L 128077 broad.mit.edu 36 1 144198725 144198725 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153713 exon2 c.G357T p.K119N . . . ARNT 405 broad.mit.edu 36 1 149056515 149056515 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197325 exon15 c.A1479C p.T493T . . . SETDB1 9869 broad.mit.edu 36 1 149181722 149181722 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145415 exon6 c.C607T p.R203X . . . POGZ 23126 broad.mit.edu 36 1 149650823 149650823 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145796 exon10 c.C1543T p.R515W . . . TCHHL1 126637 broad.mit.edu 36 1 150324470 150324470 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008536 exon3 c.C2312A p.S771Y . . . TCHHL1 126637 broad.mit.edu 36 1 150326594 150326594 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008536 exon3 c.A188G p.D63G . . . TCHH 7062 broad.mit.edu 36 1 150348023 150348023 + Missense_Mutation SNP A T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.T4294A p.F1432I . . . RPTN 126638 broad.mit.edu 36 1 150395035 150395035 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122965 exon3 c.T1164C p.S388S . . . LCE3B 353143 broad.mit.edu 36 1 150853108 150853108 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178433 exon1 c.C198T p.C66C . . . LCE1B 353132 broad.mit.edu 36 1 151051828 151051828 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178349 exon1 c.C282T p.G94G . . . CRTC2 200186 broad.mit.edu 36 1 152191716 152191716 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181715 exon8 c.C657T p.N219N . . . SLC39A1 27173 broad.mit.edu 36 1 152201413 152201413 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014437 exon4 c.C225T p.F75F . . . TPM3 7170 broad.mit.edu 36 1 152409799 152409799 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001043351 exon6 c.G544T p.E182X . . . ASH1L 55870 broad.mit.edu 36 1 153716313 153716313 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon3 c.C2972A p.T991N . . . ASH1L 55870 broad.mit.edu 36 1 153716687 153716687 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon3 c.A2598G p.P866P . . . YY1AP1 55249 broad.mit.edu 36 1 153897296 153897296 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198906 exon11 c.G1247A p.G416D . . . RIT1 6016 broad.mit.edu 36 1 154136941 154136941 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006912 exon6 c.T522G p.V174V . . . ARHGEF11 9826 broad.mit.edu 36 1 155179191 155179191 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198236 exon33 c.C3241T p.R1081W . . . FCRL5 83416 broad.mit.edu 36 1 155760853 155760853 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031281 exon10 c.T2079G p.F693L . . . FCRL2 79368 broad.mit.edu 36 1 155983159 155983159 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030764 exon12 c.G1518T p.K506N . . . OR10T2 128360 broad.mit.edu 36 1 156635799 156635799 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004475 exon1 c.C82T p.L28F . . . OR6Y1 391112 broad.mit.edu 36 1 156783757 156783757 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005189 exon1 c.C763A p.L255I . . . OR10Z1 128368 broad.mit.edu 36 1 156842911 156842911 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004478 exon1 c.C59A p.S20Y . . . MNDA 4332 broad.mit.edu 36 1 157078588 157078588 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002432 exon2 c.A21C p.K7N . . . AGMAT 79814 broad.mit.edu 36 1 15782452 15782452 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024758 exon2 c.G298T p.E100X . . . IGSF9 57549 broad.mit.edu 36 1 158163779 158163779 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135050 exon21 c.G3520A p.E1174K . . . PEX19 5824 broad.mit.edu 36 1 158516604 158516604 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002857 exon6 c.A651C p.K217N . . . FCGR3A 2214 broad.mit.edu 36 1 159784861 159784861 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127595 exon4 c.A293G p.D98G . . . NOS1AP 9722 broad.mit.edu 36 1 160603632 160603632 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126060 exon2 c.C387T p.C129C . . . C1orf226 400793 broad.mit.edu 36 1 160619691 160619691 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085375 exon2 c.T413C p.L138P . . . DDR2 4921 broad.mit.edu 36 1 160997663 160997663 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014796 exon10 c.C894A p.I298I . . . DDR2 4921 broad.mit.edu 36 1 161012190 161012190 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014796 exon16 c.G1981T p.D661Y . . . CDK11A 728642 broad.mit.edu 36 1 1625154 1625154 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024011 exon17 c.C1880T p.S627L . . . ALDH9A1 223 broad.mit.edu 36 1 163916531 163916531 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000696 exon5 c.C606A p.V202V . . . POU2F1 5451 broad.mit.edu 36 1 165635104 165635104 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002697 exon12 c.A1327C p.K443Q . . . RCSD1 92241 broad.mit.edu 36 1 165925959 165925959 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052862 exon4 c.C248T p.S83L . . . ADCY10 55811 broad.mit.edu 36 1 166072369 166072369 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167749 exon20 c.C2652A p.F884L . . . ADCY10 55811 broad.mit.edu 36 1 166132550 166132550 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167749 exon4 c.A187G p.N63D . . . GPR161 23432 broad.mit.edu 36 1 166321566 166321566 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153832 exon8 c.G1417A p.E473K . . . BLZF1 8548 broad.mit.edu 36 1 167614369 167614369 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003666 exon4 c.C646T p.R216X . . . F5 2153 broad.mit.edu 36 1 167778504 167778504 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon13 c.G2448T p.K816N . . . F5 2153 broad.mit.edu 36 1 167792714 167792714 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon6 c.C746T p.A249V . . . F5 2153 broad.mit.edu 36 1 167818377 167818377 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon2 c.C166A p.L56I . . . SELP 6403 broad.mit.edu 36 1 167852978 167852978 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003005 exon3 c.C393T p.C131C . . . SELE 6401 broad.mit.edu 36 1 167969359 167969359 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000450 exon2 c.C19A p.L7I . . . C1orf129 80133 broad.mit.edu 36 1 169207587 169207587 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025063 exon8 c.G555A p.S185S . . . BAT2L2 23215 broad.mit.edu 36 1 169776495 169776495 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015172 exon16 c.T3260G p.F1087C . . . DNM3 26052 broad.mit.edu 36 1 170268217 170268217 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015569 exon5 c.G642A p.T214T . . . C1orf9 51430 broad.mit.edu 36 1 170811295 170811295 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014283 exon11 c.A1172C p.K391T . . . C1orf9 51430 broad.mit.edu 36 1 170845693 170845693 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014283 exon24 c.G3436T p.D1146Y . . . SLC9A11 284525 broad.mit.edu 36 1 171742793 171742793 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178527 exon25 c.T3050G p.F1017C . . . SLC9A11 284525 broad.mit.edu 36 1 171809074 171809074 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178527 exon9 c.T916G p.F306V . . . PADI1 29943 broad.mit.edu 36 1 17439818 17439818 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013358 exon15 c.C1734T p.Y578Y . . . PAPPA2 60676 broad.mit.edu 36 1 174792625 174792625 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020318 exon2 c.G544T p.E182X . . . ASTN1 460 broad.mit.edu 36 1 175112347 175112347 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004319 exon21 c.G3412A p.D1138N . . . C1orf49 84066 broad.mit.edu 36 1 176752412 176752412 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170723 exon5 c.G256A p.E86K . . . ACBD6 84320 broad.mit.edu 36 1 178649158 178649158 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032360 exon5 c.C539T p.S180L . . . CACNA1E 777 broad.mit.edu 36 1 179972122 179972122 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon22 c.G3351T p.K1117N . . . CACNA1E 777 broad.mit.edu 36 1 180011863 180011863 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon38 c.C5143A p.L1715I . . . GLUL 2752 broad.mit.edu 36 1 180620207 180620207 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002065 exon8 c.C1078A p.L360I . . . RNASEL 6041 broad.mit.edu 36 1 180812116 180812116 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021133 exon6 c.A1937C p.K646T . . . C1orf14 81626 broad.mit.edu 36 1 181175096 181175096 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030933 exon5 c.A914C p.K305T . . . APOBEC4 403314 broad.mit.edu 36 1 181883993 181883993 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203454 exon2 c.C547T p.R183W . . . GLT25D2 23127 broad.mit.edu 36 1 182205046 182205046 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015101 exon5 c.C812T p.A271V . . . HMCN1 83872 broad.mit.edu 36 1 184348687 184348687 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon72 c.G11110A p.E3704K . . . HMCN1 83872 broad.mit.edu 36 1 184363850 184363850 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon83 c.C12708A p.F4236L . . . HMCN1 83872 broad.mit.edu 36 1 184366394 184366394 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon85 c.A13172G p.E4391G . . . HMCN1 83872 broad.mit.edu 36 1 184373583 184373583 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon89 c.C13780A p.L4594I . . . PRG4 10216 broad.mit.edu 36 1 184544322 184544322 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127709 exon5 c.G2569A p.E857K . . . C1orf27 54953 broad.mit.edu 36 1 184627487 184627487 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164246 exon7 c.G556T p.G186C . . . PLA2G4A 5321 broad.mit.edu 36 1 185129886 185129886 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024420 exon5 c.G298T p.E100X . . . PLA2G4A 5321 broad.mit.edu 36 1 185168599 185168599 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024420 exon8 c.G640A p.E214K . . . RGS21 431704 broad.mit.edu 36 1 190601763 190601763 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039152 exon5 c.C345A p.I115I . . . RGS2 5997 broad.mit.edu 36 1 191046774 191046774 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002923 exon4 c.C315A p.F105L . . . TROVE2 6738 broad.mit.edu 36 1 191311701 191311701 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173524 exon3 c.C709T p.R237C . . . CDC73 79577 broad.mit.edu 36 1 191371335 191371335 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024529 exon5 c.G416A p.R139Q . . . KCNT2 343450 broad.mit.edu 36 1 194562473 194562473 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198503 exon19 c.A2273G p.N758S . . . ZBTB41 360023 broad.mit.edu 36 1 195424075 195424075 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194314 exon4 c.C1516T p.R506W . . . PTPRC 5788 broad.mit.edu 36 1 196952515 196952515 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon10 c.C884A p.S295X . . . PTPRC 5788 broad.mit.edu 36 1 196977708 196977708 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon21 c.C2002T p.L668F . . . KIF14 9928 broad.mit.edu 36 1 198850128 198850128 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014875 exon4 c.A1396C p.I466L . . . IPO9 55705 broad.mit.edu 36 1 200106560 200106560 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018085 exon18 c.G2360A p.R787H . . . PPP1R12B 4660 broad.mit.edu 36 1 200666485 200666485 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167857 exon7 c.C925T p.R309X . . . MYBPH 4608 broad.mit.edu 36 1 201411094 201411094 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004997 exon2 c.G324A p.E108E . . . SLC41A1 254428 broad.mit.edu 36 1 204045863 204045863 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173854 exon2 c.C330T p.G110G . . . C4BPA 722 broad.mit.edu 36 1 205384677 205384677 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000715 exon12 c.G1786T p.E596X . . . CR2 1380 broad.mit.edu 36 1 205715047 205715047 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006658 exon14 c.A2579C p.K860T . . . CR1 1378 broad.mit.edu 36 1 205820569 205820569 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000651 exon31 c.T5204C p.V1735A . . . INTS7 25896 broad.mit.edu 36 1 210260141 210260141 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199812 exon3 c.G317T p.R106I . . . ANGEL2 90806 broad.mit.edu 36 1 211245247 211245247 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144567 exon5 c.A885C p.K295N . . . CENPF 1063 broad.mit.edu 36 1 212881428 212881428 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon12 c.A3124C p.K1042Q . . . CENPF 1063 broad.mit.edu 36 1 212892893 212892893 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon16 c.G8260T p.E2754X . . . CENPF 1063 broad.mit.edu 36 1 212896989 212896989 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon18 c.A8576G p.E2859G . . . CENPF 1063 broad.mit.edu 36 1 212897086 212897086 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon18 c.G8673A p.Q2891Q . . . KCTD3 51133 broad.mit.edu 36 1 213817990 213817990 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016121 exon6 c.G340T p.E114X . . . USH2A 7399 broad.mit.edu 36 1 213868951 213868951 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon71 c.G15347A p.R5116H . . . USH2A 7399 broad.mit.edu 36 1 214286422 214286422 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon32 c.G6299A p.G2100D . . . USH2A 7399 broad.mit.edu 36 1 214486789 214486789 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon13 c.G2570T p.G857V . . . ESRRG 2104 broad.mit.edu 36 1 214759171 214759171 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206595 exon7 c.A1009G p.K337E . . . MIA3 375056 broad.mit.edu 36 1 220902286 220902286 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon26 c.G5251A p.D1751N . . . CAPN2 824 broad.mit.edu 36 1 221998516 221998516 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001748 exon3 c.A399C p.E133D . . . DEGS1 8560 broad.mit.edu 36 1 222444337 222444337 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003676 exon2 c.G518A p.R173Q . . . PRSS38 339501 broad.mit.edu 36 1 226100428 226100428 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183062 exon5 c.G877T p.E293X . . . WNT3A 89780 broad.mit.edu 36 1 226305173 226305173 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033131 exon3 c.C507T p.F169F . . . OBSCN 84033 broad.mit.edu 36 1 226504445 226504445 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon14 c.G4190A p.R1397Q . . . OBSCN 84033 broad.mit.edu 36 1 226549296 226549296 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon43 c.C11588T p.S3863F . . . NUP133 55746 broad.mit.edu 36 1 227708428 227708428 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018230 exon2 c.G283A p.A95T . . . KIAA1383 54627 broad.mit.edu 36 1 231007536 231007536 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019090 exon1 c.A144C p.Q48H . . . PCNXL2 80003 broad.mit.edu 36 1 231460520 231460520 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon5 c.C1711T p.P571S . . . KDM1A 23028 broad.mit.edu 36 1 23229712 23229712 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009999 exon2 c.C515T p.S172L . . . LYST 1130 broad.mit.edu 36 1 234021643 234021643 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000081 exon12 c.G4522T p.D1508Y . . . HEATR1 55127 broad.mit.edu 36 1 234821944 234821944 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018072 exon11 c.C1394A p.S465Y . . . RYR2 6262 broad.mit.edu 36 1 235930324 235930324 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon65 c.C9301T p.L3101L . . . FMN2 56776 broad.mit.edu 36 1 238353163 238353163 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020066 exon2 c.G1677A p.E559E . . . KMO 8564 broad.mit.edu 36 1 239779630 239779630 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003679 exon3 c.G155T p.R52I . . . WDR64 128025 broad.mit.edu 36 1 239917415 239917415 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144625 exon7 c.T839C p.V280A . . . C1orf101 257044 broad.mit.edu 36 1 242802375 242802375 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173807 exon11 c.T1628G p.F543C . . . VN1R5 317705 broad.mit.edu 36 1 245486577 245486577 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173858 exon1 c.G581A p.G194D . . . NLRP3 114548 broad.mit.edu 36 1 245678351 245678351 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004895 exon9 c.T3033G p.N1011K . . . TRIM58 25893 broad.mit.edu 36 1 246090622 246090622 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015431 exon2 c.G501T p.K167N . . . OR2T33 391195 broad.mit.edu 36 1 246502817 246502817 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.A923G p.N308S . . . OR2T33 391195 broad.mit.edu 36 1 246503305 246503305 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.G435A p.S145S . . . OR2T4 127074 broad.mit.edu 36 1 246592502 246592502 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004696 exon1 c.C997A p.L333M . . . OR2T1 26696 broad.mit.edu 36 1 246637022 246637022 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030904 exon1 c.C1104A p.V368V . . . MAN1C1 57134 broad.mit.edu 36 1 25885594 25885594 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020379 exon2 c.G617A p.G206D . . . PAFAH2 5051 broad.mit.edu 36 1 26188531 26188531 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000437 exon3 c.C239T p.A80V . . . DHDDS 79947 broad.mit.edu 36 1 26659181 26659181 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024887 exon8 c.G724A p.E242K . . . ARID1A 8289 broad.mit.edu 36 1 26978941 26978941 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006015 exon20 c.C5965T p.R1989X . . . PIGV 55650 broad.mit.edu 36 1 26993235 26993235 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017837 exon3 c.C123T p.F41F . . . C1orf38 9473 broad.mit.edu 36 1 28079071 28079071 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105556 exon3 c.G565T p.D189Y . . . PRDM16 63976 broad.mit.edu 36 1 3318494 3318494 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022114 exon9 c.C1873A p.L625M . . . CSMD2 114784 broad.mit.edu 36 1 33981536 33981536 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon14 c.A1985G p.H662R . . . GRIK3 2899 broad.mit.edu 36 1 37119003 37119003 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000831 exon3 c.C369A p.S123S . . . MACF1 23499 broad.mit.edu 36 1 39531875 39531875 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon19 c.C2166A p.F722L . . . MACF1 23499 broad.mit.edu 36 1 39562525 39562525 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon35 c.C4325T p.A1442V . . . MACF1 23499 broad.mit.edu 36 1 39565546 39565546 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon37 c.T4563C p.L1521L . . . MACF1 23499 broad.mit.edu 36 1 39573661 39573661 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033044 exon1 c.T4134G p.N1378K . . . MACF1 23499 broad.mit.edu 36 1 39589254 39589254 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon39 c.G4990A p.A1664T . . . RLF 6018 broad.mit.edu 36 1 40477288 40477288 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012421 exon8 c.G4327T p.E1443X . . . RLF 6018 broad.mit.edu 36 1 40477798 40477798 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012421 exon8 c.G4837A p.E1613K . . . TMCO2 127391 broad.mit.edu 36 1 40489746 40489746 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008740 exon2 c.G442A p.V148I . . . KCNQ4 9132 broad.mit.edu 36 1 41073283 41073283 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004700 exon12 c.C1671T p.D557D . . . ZMYND12 84217 broad.mit.edu 36 1 42674775 42674775 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032257 exon5 c.A621C p.G207G . . . SLC6A9 6536 broad.mit.edu 36 1 44248996 44248996 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201649 exon3 c.G395A p.R132H . . . KIF2C 11004 broad.mit.edu 36 1 44985655 44985655 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006845 exon3 c.G178T p.D60Y . . . IPP 3652 broad.mit.edu 36 1 45952719 45952719 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005897 exon8 c.T1317G p.I439M . . . IPP 3652 broad.mit.edu 36 1 45979205 45979205 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005897 exon3 c.C679T p.R227X . . . CYP4Z1 199974 broad.mit.edu 36 1 47356187 47356187 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178134 exon12 c.T1512G p.V504V . . . EPS15 2060 broad.mit.edu 36 1 51706810 51706810 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001981 exon5 c.C232T p.R78C . . . ZFYVE9 9372 broad.mit.edu 36 1 52476668 52476668 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007324 exon4 c.G991T p.E331X . . . C8A 731 broad.mit.edu 36 1 57146256 57146256 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000562 exon9 c.C1262A p.S421Y . . . DAB1 1600 broad.mit.edu 36 1 57307635 57307635 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021080 exon10 c.G649T p.E217X . . . NFIA 4774 broad.mit.edu 36 1 61326574 61326574 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145512 exon3 c.C328A p.P110T . . . ATG4C 84938 broad.mit.edu 36 1 63102387 63102387 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178221 exon11 c.G1346T p.R449I . . . PGM1 5236 broad.mit.edu 36 1 63892669 63892669 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172818 exon10 c.C1597T p.R533W . . . ROR1 4919 broad.mit.edu 36 1 64416319 64416319 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005012 exon9 c.C2007A p.F669L . . . CACHD1 57685 broad.mit.edu 36 1 64867628 64867628 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020925 exon5 c.C367A p.L123I . . . CACHD1 57685 broad.mit.edu 36 1 64902771 64902771 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020925 exon15 c.C1944A p.F648L . . . LEPR 3953 broad.mit.edu 36 1 65875019 65875019 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002303 exon20 c.C3231A p.I1077I . . . IL23R 149233 broad.mit.edu 36 1 67496771 67496771 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144701 exon11 c.A1262G p.N421S . . . IL12RB2 3595 broad.mit.edu 36 1 67565032 67565032 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001559 exon4 c.T391C p.S131P . . . LRRC7 57554 broad.mit.edu 36 1 70276599 70276599 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020794 exon19 c.C2390T p.S797L . . . LRRIQ3 127255 broad.mit.edu 36 1 74279698 74279698 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105659 exon7 c.C1505A p.A502D . . . LRRIQ3 127255 broad.mit.edu 36 1 74347825 74347825 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105659 exon5 c.C708T p.S236S . . . LRRIQ3 127255 broad.mit.edu 36 1 74421044 74421044 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105659 exon3 c.G339T p.K113N . . . TNNI3K 51086 broad.mit.edu 36 1 74488948 74488948 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199327 exon6 c.G543T p.K181N . . . C1orf173 127254 broad.mit.edu 36 1 74811059 74811059 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon14 c.C2923A p.L975I . . . C1orf173 127254 broad.mit.edu 36 1 74845139 74845139 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon10 c.C1223A p.S408Y . . . ACADM 34 broad.mit.edu 36 1 75970941 75970941 + De_novo_Start_OutOfFrame SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000016 exon3 c.T143G p.F48C . . . MSH4 4438 broad.mit.edu 36 1 76127581 76127581 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002440 exon16 c.G2165A p.R722K . . . USP33 23032 broad.mit.edu 36 1 77966846 77966846 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015017 exon11 c.A950C p.D317A . . . PER3 8863 broad.mit.edu 36 1 7809195 7809195 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016831 exon16 c.G2002T p.E668X . . . PER3 8863 broad.mit.edu 36 1 7812488 7812488 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016831 exon18 c.T2867G p.V956G . . . PTGFR 5737 broad.mit.edu 36 1 78731812 78731812 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000959 exon2 c.C796A p.L266M . . . RPF1 80135 broad.mit.edu 36 1 84734235 84734235 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025065 exon7 c.G782A p.R261H . . . MCOLN3 55283 broad.mit.edu 36 1 85260632 85260632 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018298 exon10 c.A1135C p.T379P . . . WDR63 126820 broad.mit.edu 36 1 85319679 85319679 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145172 exon4 c.T278G p.I93S . . . ZNHIT6 54680 broad.mit.edu 36 1 85944577 85944577 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170670 exon4 c.C655T p.R219X . . . COL24A1 255631 broad.mit.edu 36 1 86363480 86363480 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152890 exon3 c.A1127C p.N376T . . . ODF2L 57489 broad.mit.edu 36 1 86592815 86592815 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020729 exon16 c.G1705T p.E569X . . . CLCA1 1179 broad.mit.edu 36 1 86711795 86711795 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001285 exon2 c.C270T p.D90D . . . CLCA1 1179 broad.mit.edu 36 1 86732654 86732654 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001285 exon11 c.T1877G p.V626G . . . GBP7 388646 broad.mit.edu 36 1 89370647 89370647 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207398 exon11 c.T1690G p.F564V . . . HFM1 164045 broad.mit.edu 36 1 91554060 91554060 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017975 exon28 c.T3040G p.F1014V . . . HFM1 164045 broad.mit.edu 36 1 91591293 91591293 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017975 exon15 c.C1734A p.I578I . . . BRDT 676 broad.mit.edu 36 1 92202823 92202823 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207189 exon3 c.C244T p.R82C . . . EPHX4 253152 broad.mit.edu 36 1 92280973 92280973 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173567 exon3 c.C323A p.S108Y . . . ALG14 199857 broad.mit.edu 36 1 95303050 95303050 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144988 exon2 c.C248A p.S83Y . . . DPYD 1806 broad.mit.edu 36 1 97336732 97336732 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000110 exon21 c.C2667A p.I889I . . . LPPR4 9890 broad.mit.edu 36 1 99544235 99544235 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon7 c.G1373A p.R458Q . . . NMNAT1 64802 broad.mit.edu 36 1 9965242 9965242 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022787 exon5 c.G736T p.E246X . . . ELF3 1999 broad.mit.edu 36 1 200249689 200249689 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114309 exon8 c.915delC p.F305fs . . . TASP1 55617 broad.mit.edu 36 20 13487737 13487737 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017714 exon8 c.G593T p.R198I . . . TASP1 55617 broad.mit.edu 36 20 13552143 13552143 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017714 exon4 c.G232A p.A78T . . . ESF1 51575 broad.mit.edu 36 20 13662414 13662414 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016649 exon10 c.T1904C p.F635S . . . ESF1 51575 broad.mit.edu 36 20 13711225 13711225 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016649 exon2 c.T562G p.L188V . . . SEL1L2 80343 broad.mit.edu 36 20 13795414 13795414 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025229 exon15 c.T1338G p.I446M . . . KIF16B 55614 broad.mit.edu 36 20 16308507 16308507 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon19 c.G2140T p.E714X . . . SEC23B 10483 broad.mit.edu 36 20 18444339 18444339 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032986 exon4 c.G325A p.E109K . . . CRNKL1 51340 broad.mit.edu 36 20 19966119 19966119 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon14 c.C2227T p.R743X . . . C20orf26 26074 broad.mit.edu 36 20 20226850 20226850 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015585 exon25 c.C3242T p.A1081V . . . PLK1S1 55857 broad.mit.edu 36 20 21065112 21065112 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018474 exon3 c.A234C p.Q78H . . . CPXM1 56265 broad.mit.edu 36 20 2727472 2727472 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184699 exon2 c.G240T p.K80N . . . KIF3B 9371 broad.mit.edu 36 20 30362031 30362031 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004798 exon2 c.G790T p.E264X . . . ASXL1 171023 broad.mit.edu 36 20 30484426 30484426 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015338 exon10 c.C1062A p.F354L . . . ASXL1 171023 broad.mit.edu 36 20 30487276 30487276 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015338 exon12 c.A3100G p.K1034E . . . DNMT3B 1789 broad.mit.edu 36 20 30847125 30847125 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175848 exon11 c.G1201A p.A401T . . . TGM2 7052 broad.mit.edu 36 20 36193020 36193020 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004613 exon12 c.G1802A p.R601H . . . TOP1 7150 broad.mit.edu 36 20 39178332 39178332 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003286 exon17 c.A1708C p.T570P . . . PTPRT 11122 broad.mit.edu 36 20 40534386 40534386 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon8 c.C1384A p.L462I . . . RIMS4 140730 broad.mit.edu 36 20 42819800 42819800 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182970 exon4 c.C376T p.R126W . . . SEMG2 6407 broad.mit.edu 36 20 43284467 43284467 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003008 exon2 c.C780T p.L260L . . . ZNF334 55713 broad.mit.edu 36 20 44566347 44566347 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018102 exon4 c.C154A p.H52N . . . SLC9A8 23315 broad.mit.edu 36 20 47889534 47889534 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015266 exon4 c.G339A p.A113A . . . SLC9A8 23315 broad.mit.edu 36 20 47905494 47905494 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015266 exon8 c.C682A p.L228I . . . PCNA 5111 broad.mit.edu 36 20 5047467 5047467 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002592 exon3 c.A267C p.T89T . . . C20orf43 51507 broad.mit.edu 36 20 54483152 54483152 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016407 exon3 c.A176G p.K59R . . . CTCFL 140690 broad.mit.edu 36 20 55524253 55524253 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080618 exon6 c.G1103A p.R368H . . . PCK1 5105 broad.mit.edu 36 20 55572642 55572642 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002591 exon7 c.G973A p.A325T . . . ZBP1 81030 broad.mit.edu 36 20 55618769 55618769 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160417 exon7 c.C932A p.T311N . . . ZNF831 128611 broad.mit.edu 36 20 57202316 57202316 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178457 exon1 c.G2847T p.E949D . . . C20orf177 63939 broad.mit.edu 36 20 57952478 57952478 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190826 exon5 c.G85A p.A29T . . . CHGB 1114 broad.mit.edu 36 20 5851440 5851440 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001819 exon4 c.C650T p.S217L . . . TAF4 6874 broad.mit.edu 36 20 60017597 60017597 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003185 exon5 c.A1790C p.K597T . . . PRPF6 24148 broad.mit.edu 36 20 62084845 62084845 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012469 exon2 c.G73A p.A25T . . . MYT1 4661 broad.mit.edu 36 20 62309669 62309669 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004535 exon7 c.G676A p.E226K . . . POTED 317754 broad.mit.edu 36 21 13904894 13904894 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174981 exon1 c.C474T p.I158I . . . LIPI 149998 broad.mit.edu 36 21 14480187 14480187 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198996 exon3 c.A570C p.G190G . . . SAMSN1 64092 broad.mit.edu 36 21 14804605 14804605 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022136 exon5 c.G458A p.R153Q . . . CXADR 1525 broad.mit.edu 36 21 17846051 17846051 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001338 exon3 c.G324A p.T108T . . . TMPRSS15 5651 broad.mit.edu 36 21 18588466 18588466 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002772 exon21 c.C2478T p.C826C . . . NCAM2 4685 broad.mit.edu 36 21 21629723 21629723 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004540 exon7 c.G765T p.E255D . . . ADAMTS5 11096 broad.mit.edu 36 21 27228871 27228871 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon4 c.G1474A p.D492N . . . RWDD2B 10069 broad.mit.edu 36 21 29300808 29300808 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016940 exon5 c.G761A p.R254H . . . RWDD2B 10069 broad.mit.edu 36 21 29302662 29302662 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016940 exon2 c.G219T p.K73N . . . CLDN8 9073 broad.mit.edu 36 21 30509829 30509829 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199328 exon1 c.A286G p.M96V . . . CLDN8 9073 broad.mit.edu 36 21 30510096 30510096 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199328 exon1 c.G19T p.E7X . . . KRTAP24-1 643803 broad.mit.edu 36 21 30577060 30577060 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085455 exon1 c.G62T p.R21I . . . KRTAP13-3 337960 broad.mit.edu 36 21 30719979 30719979 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181622 exon1 c.C123A p.C41X . . . SFRS15 57466 broad.mit.edu 36 21 31987603 31987603 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145444 exon11 c.G1343A p.R448Q . . . SYNJ1 8867 broad.mit.edu 36 21 32950892 32950892 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon21 c.G2888T p.S963I . . . GCFC1 94104 broad.mit.edu 36 21 33029226 33029226 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016631 exon18 c.A2660C p.K887T . . . DNAJC28 54943 broad.mit.edu 36 21 33782943 33782943 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040192 exon2 c.G628T p.E210X . . . TTC3 7267 broad.mit.edu 36 21 37382018 37382018 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001894 exon3 c.G160T p.D54Y . . . TTC3 7267 broad.mit.edu 36 21 37445011 37445011 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001894 exon25 c.G2233T p.E745X . . . TTC3 7267 broad.mit.edu 36 21 37486303 37486303 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001894 exon41 c.T5136G p.I1712M . . . BRWD1 54014 broad.mit.edu 36 21 39500069 39500069 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033656 exon37 c.T4199G p.I1400S . . . TMPRSS2 7113 broad.mit.edu 36 21 41791922 41791922 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135099 exon2 c.G120T p.L40F . . . UMODL1 89766 broad.mit.edu 36 21 42409117 42409117 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199527 exon13 c.G2596A p.A866T . . . UBASH3A 53347 broad.mit.edu 36 21 42711675 42711675 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001895 exon6 c.G820A p.E274K . . . CECR2 27443 broad.mit.edu 36 22 16358513 16358513 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031413 exon3 c.C353A p.S118Y . . . CECR2 27443 broad.mit.edu 36 22 16402359 16402359 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031413 exon15 c.C2463T p.R821R . . . IGLL1 3543 broad.mit.edu 36 22 22245765 22245765 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152855 exon2 c.C214A p.Q72K . . . ZNF70 7621 broad.mit.edu 36 22 22416597 22416597 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021916 exon2 c.G731T p.R244I . . . PIWIL3 440822 broad.mit.edu 36 22 23454201 23454201 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008496 exon15 c.G1875T p.K625N . . . ADRBK2 157 broad.mit.edu 36 22 24389644 24389644 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005160 exon5 c.G414T p.K138N . . . MTMR3 8897 broad.mit.edu 36 22 28751762 28751762 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153050 exon20 c.A3485G p.D1162G . . . MORC2 22880 broad.mit.edu 36 22 29658993 29658993 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014941 exon23 c.G2219A p.R740H . . . SFI1 9814 broad.mit.edu 36 22 30257078 30257078 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014775 exon4 c.C301T p.R101X . . . DEPDC5 9681 broad.mit.edu 36 22 30632008 30632008 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014662 exon41 c.T4382G p.F1461C . . . YWHAH 7533 broad.mit.edu 36 22 30682269 30682269 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003405 exon2 c.G231T p.K77N . . . LARGE 9215 broad.mit.edu 36 22 32487362 32487362 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133642 exon2 c.C102T p.F34F . . . LARGE 9215 broad.mit.edu 36 22 32487441 32487441 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133642 exon2 c.G23A p.R8K . . . MYH9 4627 broad.mit.edu 36 22 35020104 35020104 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002473 exon28 c.G3817A p.D1273N . . . NCF4 4689 broad.mit.edu 36 22 35603801 35603801 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000631 exon10 c.C1010T p.T337M . . . DMC1 11144 broad.mit.edu 36 22 37265332 37265332 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007068 exon9 c.C526T p.R176C . . . PPPDE2 27351 broad.mit.edu 36 22 40330035 40330035 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015704 exon4 c.C249A p.I83I . . . SEPT3 55964 broad.mit.edu 36 22 40720692 40720692 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019106 exon10 c.G1039A p.D347N . . . TCF20 6942 broad.mit.edu 36 22 40940344 40940344 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005650 exon1 c.G912T p.K304N . . . POLDIP3 84271 broad.mit.edu 36 22 41328914 41328914 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178136 exon2 c.C256T p.R86X . . . TTLL1 25809 broad.mit.edu 36 22 41772479 41772479 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012263 exon10 c.A1023C p.R341R . . . TTLL1 25809 broad.mit.edu 36 22 41801504 41801504 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012263 exon3 c.C33T p.I11I . . . SMC1B 27127 broad.mit.edu 36 22 44173757 44173757 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148674 exon6 c.A995G p.D332G . . . TBC1D22A 25771 broad.mit.edu 36 22 45665882 45665882 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014346 exon6 c.A765C p.K255N . . . BRD1 23774 broad.mit.edu 36 22 48603870 48603870 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014577 exon1 c.G100A p.A34T . . . MOV10L1 54456 broad.mit.edu 36 22 48895101 48895101 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon7 c.C1049T p.S350L . . . MOV10L1 54456 broad.mit.edu 36 22 48906088 48906088 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon11 c.C1710T p.V570V . . . MOV10L1 54456 broad.mit.edu 36 22 48915100 48915100 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon15 c.G1984T p.E662X . . . ACR 49 broad.mit.edu 36 22 49529402 49529402 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097 exon4 c.G613A p.D205N . . . LONRF2 164832 broad.mit.edu 36 2 100278405 100278405 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198461 exon8 c.G1519T p.E507X . . . MAP4K4 9448 broad.mit.edu 36 2 101806882 101806882 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145687 exon4 c.A241C p.N81H . . . IL1R2 7850 broad.mit.edu 36 2 101991482 101991482 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173343 exon2 c.T13C p.Y5H . . . IL18R1 8809 broad.mit.edu 36 2 102350822 102350822 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003855 exon2 c.G164A p.S55N . . . IL18RAP 8807 broad.mit.edu 36 2 102434988 102434988 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003853 exon12 c.T1715A p.L572H . . . SLC9A4 389015 broad.mit.edu 36 2 102507974 102507974 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011552 exon10 c.G1878T p.E626D . . . ODC1 4953 broad.mit.edu 36 2 10498320 10498320 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002539 exon12 c.C1367T p.S456L . . . C2orf49 79074 broad.mit.edu 36 2 105325843 105325843 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024093 exon3 c.C373T p.R125X . . . RANBP2 5903 broad.mit.edu 36 2 108718460 108718460 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006267 exon5 c.A446C p.K149T . . . KCNF1 3754 broad.mit.edu 36 2 10971097 10971097 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002236 exon1 c.T1094C p.I365T . . . ANAPC1 64682 broad.mit.edu 36 2 112354868 112354868 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022662 exon2 c.G6A p.S2S . . . TTL 150465 broad.mit.edu 36 2 112968368 112968368 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153712 exon3 c.G414T p.K138N . . . CKAP2L 150468 broad.mit.edu 36 2 113230540 113230540 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152515 exon4 c.G879T p.K293N . . . DPP10 57628 broad.mit.edu 36 2 116289013 116289013 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178036 exon21 c.G1725T p.K575N . . . GREB1 9687 broad.mit.edu 36 2 11689537 11689537 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014668 exon27 c.G4663A p.E1555K . . . LPIN1 23175 broad.mit.edu 36 2 11877076 11877076 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon18 c.G2310T p.K770N . . . LPIN1 23175 broad.mit.edu 36 2 11878056 11878056 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon19 c.G2478A p.E826E . . . PTPN4 5775 broad.mit.edu 36 2 120419219 120419219 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002830 exon16 c.C1448T p.S483L . . . CNTNAP5 129684 broad.mit.edu 36 2 125237821 125237821 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon15 c.T2334C p.I778I . . . TRIB2 28951 broad.mit.edu 36 2 12798291 12798291 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021643 exon3 c.G952A p.A318T . . . UGGT1 56886 broad.mit.edu 36 2 128619969 128619969 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020120 exon18 c.A1974C p.K658N . . . GPR148 344561 broad.mit.edu 36 2 131204072 131204072 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207364 exon1 c.A878G p.D293G . . . CCNT2 905 broad.mit.edu 36 2 135426740 135426740 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058241 exon8 c.C763T p.R255X . . . YSK4 80122 broad.mit.edu 36 2 135460258 135460258 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025052 exon7 c.G2654A p.R885Q . . . LCT 3938 broad.mit.edu 36 2 136282671 136282671 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002299 exon8 c.C3716T p.S1239L . . . THSD7B 80731 broad.mit.edu 36 2 137746594 137746594 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080427 exon10 c.C2195A p.S732Y . . . LRP1B 53353 broad.mit.edu 36 2 140797955 140797955 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon81 c.C12491A p.S4164Y . . . LRP1B 53353 broad.mit.edu 36 2 141000283 141000283 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon48 c.G7869T p.K2623N . . . LRP1B 53353 broad.mit.edu 36 2 141463602 141463602 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon17 c.C2739T p.S913S . . . LYPD6B 130576 broad.mit.edu 36 2 149779365 149779365 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177964 exon7 c.T519G p.T173T . . . TNFAIP6 7130 broad.mit.edu 36 2 151944262 151944262 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007115 exon6 c.A803C p.N268T . . . RIF1 55183 broad.mit.edu 36 2 152029721 152029721 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177664 exon30 c.C5441T p.S1814F . . . NEB 4703 broad.mit.edu 36 2 152101984 152101984 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon141 c.G21115T p.E7039X . . . NEB 4703 broad.mit.edu 36 2 152231154 152231154 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon41 c.A4727G p.Y1576C . . . FMNL2 114793 broad.mit.edu 36 2 153193218 153193218 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052905 exon18 c.C2325T p.I775I . . . NBAS 51594 broad.mit.edu 36 2 15475118 15475118 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015909 exon24 c.G2747T p.R916I . . . UPP2 151531 broad.mit.edu 36 2 158686283 158686283 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135098 exon7 c.G742T p.E248X . . . TANC1 85461 broad.mit.edu 36 2 159713967 159713967 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033394 exon6 c.T433G p.L145V . . . TANK 10010 broad.mit.edu 36 2 161800136 161800136 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199135 exon8 c.C1139T p.S380L . . . PSMD14 10213 broad.mit.edu 36 2 161955905 161955905 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005805 exon9 c.T615G p.I205M . . . GCG 2641 broad.mit.edu 36 2 162708870 162708870 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002054 exon5 c.C449A p.S150Y . . . COBLL1 22837 broad.mit.edu 36 2 165260042 165260042 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014900 exon12 c.G2220T p.K740N . . . SLC38A11 151258 broad.mit.edu 36 2 165473483 165473483 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173512 exon9 c.C774A p.F258L . . . SCN3A 6328 broad.mit.edu 36 2 165655251 165655251 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon28 c.C5658A p.V1886V . . . SCN1A 6323 broad.mit.edu 36 2 166606179 166606179 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165964 exon13 c.T2139G p.F713L . . . SCN1A 6323 broad.mit.edu 36 2 166612440 166612440 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165964 exon8 c.T1113G p.A371A . . . SCN9A 6335 broad.mit.edu 36 2 166867862 166867862 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002977 exon7 c.T885C p.S295S . . . SCN7A 6332 broad.mit.edu 36 2 167006424 167006424 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon14 c.G1885T p.D629Y . . . SCN7A 6332 broad.mit.edu 36 2 167030281 167030281 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon8 c.A878C p.E293A . . . XIRP2 129446 broad.mit.edu 36 2 167804634 167804634 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon7 c.T981C p.V327V . . . XIRP2 129446 broad.mit.edu 36 2 167809351 167809351 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A2537C p.K846T . . . XIRP2 129446 broad.mit.edu 36 2 167811248 167811248 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.T4434C p.G1478G . . . XIRP2 129446 broad.mit.edu 36 2 167823432 167823432 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon11 c.C2229T p.N743N . . . XIRP2 129446 broad.mit.edu 36 2 167823928 167823928 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon11 c.T2725G p.F909V . . . XIRP2 129446 broad.mit.edu 36 2 167823998 167823998 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon11 c.T2795G p.F932C . . . LRP2 4036 broad.mit.edu 36 2 169693825 169693825 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon78 c.C13744A p.L4582I . . . LRP2 4036 broad.mit.edu 36 2 169781051 169781051 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon35 c.C5784T p.I1928I . . . LRP2 4036 broad.mit.edu 36 2 169835822 169835822 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon16 c.C2158T p.R720C . . . FASTKD1 79675 broad.mit.edu 36 2 170111091 170111091 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024622 exon8 c.G1584T p.M528I . . . PHOSPHO2 493911 broad.mit.edu 36 2 170265935 170265935 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199288 exon4 c.A208G p.T70A . . . PDK1 5163 broad.mit.edu 36 2 173138008 173138008 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002610 exon5 c.A652C p.S218R . . . RAD51AP2 729475 broad.mit.edu 36 2 17560423 17560423 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099218 exon1 c.C2741A p.S914X . . . EVX2 344191 broad.mit.edu 36 2 176656561 176656561 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080458 exon1 c.G190T p.E64X . . . SMC6 79677 broad.mit.edu 36 2 17765780 17765780 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142286 exon11 c.G853T p.E285X . . . GEN1 348654 broad.mit.edu 36 2 17825486 17825486 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130009 exon14 c.C1526T p.S509L . . . GEN1 348654 broad.mit.edu 36 2 17825793 17825793 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130009 exon14 c.A1833C p.K611N . . . OSBPL6 114880 broad.mit.edu 36 2 178946960 178946960 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032523 exon15 c.C1493T p.A498V . . . FKBP7 51661 broad.mit.edu 36 2 179051452 179051452 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181342 exon1 c.C21A p.F7L . . . TTN 7273 broad.mit.edu 36 2 179107052 179107052 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.A75340G p.T25114A . . . TTN 7273 broad.mit.edu 36 2 179133656 179133656 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C58253T p.S19418L . . . TTN 7273 broad.mit.edu 36 2 179135989 179135989 + Missense_Mutation SNP C T T rs72648217 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.G55920A p.P18640P . . . TTN 7273 broad.mit.edu 36 2 179141203 179141203 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.G50706A p.P16902P . . . TTN 7273 broad.mit.edu 36 2 179142492 179142492 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C49417T p.L16473L . . . TTN 7273 broad.mit.edu 36 2 179144685 179144685 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.A47224G p.T15742A . . . TTN 7273 broad.mit.edu 36 2 179305163 179305163 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon54 c.C13046A p.S4349Y . . . TTN 7273 broad.mit.edu 36 2 179312946 179312946 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon45 c.G12170T p.R4057I . . . ITGA4 3676 broad.mit.edu 36 2 182066348 182066348 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000885 exon11 c.T1205G p.I402S . . . ITGA4 3676 broad.mit.edu 36 2 182102574 182102574 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000885 exon23 c.C2492A p.S831Y . . . DNAJC10 54431 broad.mit.edu 36 2 183335758 183335758 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018981 exon22 c.C2250A p.F750L . . . ZC3H15 55854 broad.mit.edu 36 2 187078466 187078466 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018471 exon7 c.C761A p.S254Y . . . ZC3H15 55854 broad.mit.edu 36 2 187078739 187078739 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018471 exon8 c.C892T p.R298C . . . ZSWIM2 151112 broad.mit.edu 36 2 187401445 187401445 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182521 exon9 c.C1413A p.C471X . . . TFPI 7035 broad.mit.edu 36 2 188076638 188076638 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006287 exon2 c.G103T p.E35X . . . GULP1 51454 broad.mit.edu 36 2 189160908 189160908 + Nonsense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016315 exon11 c.T830G p.L277X . . . COL3A1 1281 broad.mit.edu 36 2 189563088 189563088 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000090 exon9 c.C712T p.R238X . . . MYO1B 4430 broad.mit.edu 36 2 191942579 191942579 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon12 c.C1099T p.R367X . . . SDPR 8436 broad.mit.edu 36 2 192409265 192409265 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004657 exon2 c.C907T p.R303X . . . DNAH7 56171 broad.mit.edu 36 2 196313753 196313753 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon64 c.T11850G p.L3950L . . . DNAH7 56171 broad.mit.edu 36 2 196344806 196344806 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon61 c.C11256T p.V3752V . . . HECW2 57520 broad.mit.edu 36 2 196788875 196788875 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020760 exon28 c.A4566C p.R1522S . . . GTF3C3 9330 broad.mit.edu 36 2 197353587 197353587 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012086 exon9 c.G1159T p.D387Y . . . SF3B1 23451 broad.mit.edu 36 2 197981046 197981046 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012433 exon9 c.G1160A p.R387Q . . . MARS2 92935 broad.mit.edu 36 2 198279293 198279293 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138395 exon1 c.A919C p.I307L . . . PLCL1 5334 broad.mit.edu 36 2 198658400 198658400 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006226 exon2 c.C1914A p.F638L . . . C2orf69 205327 broad.mit.edu 36 2 200498649 200498649 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153689 exon2 c.A953C p.K318T . . . SGOL2 151246 broad.mit.edu 36 2 201142788 201142788 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160046 exon6 c.G631T p.E211X . . . INO80D 54891 broad.mit.edu 36 2 206577892 206577892 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017759 exon11 c.C2529A p.I843I . . . LOC200726 200726 broad.mit.edu 36 2 207217374 207217374 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102659 exon2 c.C169A p.L57I . . . DYTN 391475 broad.mit.edu 36 2 207272822 207272822 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093730 exon7 c.C593A p.S198Y . . . PIKFYVE 200576 broad.mit.edu 36 2 208861781 208861781 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178000 exon7 c.G905A p.R302Q . . . PIKFYVE 200576 broad.mit.edu 36 2 208887270 208887270 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015040 exon14 c.A1704C p.L568F . . . MAP2 4133 broad.mit.edu 36 2 210266557 210266557 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002374 exon7 c.T1418G p.I473S . . . MAP2 4133 broad.mit.edu 36 2 210266729 210266729 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002374 exon7 c.G1590T p.K530N . . . MAP2 4133 broad.mit.edu 36 2 210283081 210283081 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031847 exon9 c.T863C p.V288A . . . APOB 338 broad.mit.edu 36 2 21083442 21083442 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon26 c.C9803T p.S3268L . . . CPS1 1373 broad.mit.edu 36 2 211178131 211178131 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122634 exon7 c.G544T p.E182X . . . CPS1 1373 broad.mit.edu 36 2 211181396 211181396 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122634 exon9 c.C906T p.V302V . . . SPAG16 79582 broad.mit.edu 36 2 213913135 213913135 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024532 exon6 c.A540C p.K180N . . . BARD1 580 broad.mit.edu 36 2 215354423 215354423 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000465 exon4 c.G420T p.K140N . . . ABCA12 26154 broad.mit.edu 36 2 215584455 215584455 + Nonsense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173076 exon17 c.T2285G p.L762X . . . ABCA12 26154 broad.mit.edu 36 2 215598718 215598718 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173076 exon11 c.G1211A p.R404Q . . . FN1 2335 broad.mit.edu 36 2 215967677 215967677 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212476 exon24 c.T3615C p.G1205G . . . XRCC5 7520 broad.mit.edu 36 2 216700534 216700534 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021141 exon8 c.A829C p.T277P . . . SPEG 10290 broad.mit.edu 36 2 220037524 220037524 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173476 exon4 c.C284T p.A95V . . . SCG2 7857 broad.mit.edu 36 2 224172179 224172179 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003469 exon2 c.C66T p.I22I . . . KIAA1486 57624 broad.mit.edu 36 2 225981970 225981970 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020864 exon2 c.C130T p.R44X . . . WDR69 164781 broad.mit.edu 36 2 228491770 228491770 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178821 exon11 c.G1004T p.R335I . . . TRIP12 9320 broad.mit.edu 36 2 230402183 230402183 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon7 c.C1276T p.L426F . . . GIGYF2 26058 broad.mit.edu 36 2 233412870 233412870 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon22 c.C2816A p.S939X . . . DGKD 8527 broad.mit.edu 36 2 234007813 234007813 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152879 exon4 c.G397T p.E133X . . . UGT1A8 54576 broad.mit.edu 36 2 234191436 234191436 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019076 exon1 c.G344T p.G115V . . . COL6A3 1293 broad.mit.edu 36 2 237961501 237961501 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057167 exon3 c.G157A p.A53T . . . RBM44 375316 broad.mit.edu 36 2 238390571 238390571 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080504 exon3 c.G273T p.E91D . . . ASXL2 55252 broad.mit.edu 36 2 25832434 25832434 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018263 exon9 c.C993A p.F331L . . . KIF3C 3797 broad.mit.edu 36 2 26058110 26058110 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002254 exon1 c.G181T p.D61Y . . . HADHA 3030 broad.mit.edu 36 2 26271006 26271006 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000182 exon16 c.A1626G p.G542G . . . HADHB 3032 broad.mit.edu 36 2 26339768 26339768 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000183 exon4 c.G126A p.T42T . . . C2orf39 92749 broad.mit.edu 36 2 26529883 26529883 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145038 exon14 c.G1881T p.K627N . . . OTOF 9381 broad.mit.edu 36 2 26538466 26538466 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194323 exon25 c.C2979A p.I993I . . . AGBL5 60509 broad.mit.edu 36 2 27129890 27129890 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035507 exon3 c.G332A p.R111H . . . C2orf53 339779 broad.mit.edu 36 2 27214055 27214056 + Missense_Mutation DNP AC CA CA novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 AC AC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178553 exon3 c.646_647TG . . . . C2orf53 339779 broad.mit.edu 36 2 27214225 27214225 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178553 exon3 c.C477T p.S159S . . . CLIP4 79745 broad.mit.edu 36 2 29236800 29236800 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024692 exon12 c.C1497A p.G499G . . . MEMO1 51072 broad.mit.edu 36 2 31970601 31970601 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015955 exon6 c.A544C p.N182H . . . NLRC4 58484 broad.mit.edu 36 2 32303068 32303068 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon9 c.C3053T p.A1018V . . . NLRC4 58484 broad.mit.edu 36 2 32328514 32328514 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.A1923T p.E641D . . . NLRC4 58484 broad.mit.edu 36 2 32328660 32328660 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.G1777A p.D593N . . . NLRC4 58484 broad.mit.edu 36 2 32329212 32329212 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.G1225A p.E409K . . . BIRC6 57448 broad.mit.edu 36 2 32556003 32556003 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon35 c.G6916T p.E2306X . . . BIRC6 57448 broad.mit.edu 36 2 32586817 32586817 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon51 c.G9967A p.V3323I . . . BIRC6 57448 broad.mit.edu 36 2 32672616 32672616 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon67 c.C13486T p.R4496W . . . CRIM1 51232 broad.mit.edu 36 2 36477291 36477291 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016441 exon2 c.G362A p.G121D . . . STRN 6801 broad.mit.edu 36 2 36938590 36938590 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003162 exon14 c.T1750G p.L584V . . . MAP4K3 8491 broad.mit.edu 36 2 39341404 39341404 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003618 exon29 c.C2155T p.P719S . . . THADA 63892 broad.mit.edu 36 2 43657731 43657731 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083953 exon10 c.G971A p.S324N . . . PLEKHH2 130271 broad.mit.edu 36 2 43780782 43780782 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172069 exon8 c.G1181T p.R394I . . . DYNC2LI1 51626 broad.mit.edu 36 2 43876547 43876547 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193464 exon7 c.T525G p.I175M . . . DYNC2LI1 51626 broad.mit.edu 36 2 43877418 43877418 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193464 exon8 c.T637C p.Y213H . . . LRPPRC 10128 broad.mit.edu 36 2 44028392 44028392 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133259 exon19 c.G1947T p.K649N . . . MCFD2 90411 broad.mit.edu 36 2 46986183 46986183 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171507 exon4 c.G364T p.D122Y . . . MSH2 4436 broad.mit.edu 36 2 47510542 47510542 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000251 exon7 c.A1234C p.N412H . . . MSH6 2956 broad.mit.edu 36 2 47887257 47887257 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000179 exon9 c.G3964T p.E1322X . . . FBXO11 80204 broad.mit.edu 36 2 47889806 47889806 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190274 exon21 c.C2550A p.F850L . . . FOXN2 3344 broad.mit.edu 36 2 48427271 48427271 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002158 exon3 c.T414G p.I138M . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48661956 48661956 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001198594 exon1 c.A680G p.N227S . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48662678 48662678 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198594 exon1 c.G1402T p.E468X . . . MTIF2 4528 broad.mit.edu 36 2 55324686 55324686 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005369 exon12 c.C1294A p.L432I . . . CCDC88A 55704 broad.mit.edu 36 2 55425140 55425140 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135597 exon11 c.C1056T p.D352D . . . XPO1 7514 broad.mit.edu 36 2 61572976 61572976 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003400 exon15 c.G1711A p.E571K . . . AFTPH 54812 broad.mit.edu 36 2 64632851 64632851 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017657 exon2 c.G739T p.E247X . . . MEIS1 4211 broad.mit.edu 36 2 66518379 66518379 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002398 exon2 c.G19A p.D7N . . . ETAA1 54465 broad.mit.edu 36 2 67484949 67484949 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019002 exon5 c.C1631T p.A544V . . . PLEK 5341 broad.mit.edu 36 2 68461462 68461462 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002664 exon3 c.A302C p.K101T . . . PROKR1 10887 broad.mit.edu 36 2 68736002 68736002 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138964 exon2 c.C972A p.F324L . . . C2orf42 54980 broad.mit.edu 36 2 70262608 70262608 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017880 exon3 c.C14A p.S5Y . . . ZNF638 27332 broad.mit.edu 36 2 71446261 71446261 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014497 exon6 c.C1912T p.R638C . . . EMX1 2016 broad.mit.edu 36 2 73014571 73014571 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004097 exon3 c.G853A p.D285N . . . ALMS1 7840 broad.mit.edu 36 2 73570671 73570671 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon10 c.G8074T p.E2692X . . . RTKN 6242 broad.mit.edu 36 2 74510496 74510496 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015056 exon6 c.G572A p.S191N . . . DQX1 165545 broad.mit.edu 36 2 74600200 74600200 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133637 exon10 c.C1797A p.Y599X . . . SEMA4F 10505 broad.mit.edu 36 2 74737225 74737225 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004263 exon2 c.C202A p.L68I . . . FAM176A 84141 broad.mit.edu 36 2 75574082 75574082 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032181 exon4 c.G247A p.D83N . . . CTNNA2 1496 broad.mit.edu 36 2 79938658 79938658 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon4 c.C310T p.R104W . . . DNAH6 1768 broad.mit.edu 36 2 84658008 84658008 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001370 exon13 c.G2041T p.E681X . . . IMMT 10989 broad.mit.edu 36 2 86260073 86260073 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100169 exon3 c.G303T p.K101N . . . KIDINS220 57498 broad.mit.edu 36 2 8843404 8843404 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020738 exon17 c.A2147G p.D716G . . . KIDINS220 57498 broad.mit.edu 36 2 8876327 8876327 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020738 exon3 c.A156G p.E52E . . . MBOAT2 129642 broad.mit.edu 36 2 9016170 9016170 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138799 exon2 c.G128A p.R43Q . . . ZNF514 84874 broad.mit.edu 36 2 95179202 95179202 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032788 exon5 c.G755T p.R252I . . . ANKRD36B 57730 broad.mit.edu 36 2 97530485 97530485 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025190 exon22 c.G1525T p.D509Y . . . TMEM131 23505 broad.mit.edu 36 2 97798198 97798198 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015348 exon13 c.G1188A p.S396S . . . LIPT1 51601 broad.mit.edu 36 2 99145151 99145151 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145197 exon4 c.G299T p.R100I . . . REV1 51455 broad.mit.edu 36 2 99432251 99432251 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016316 exon4 c.G329A p.R110Q . . . FANCD2 2177 broad.mit.edu 36 3 10051388 10051388 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033084 exon5 c.G283T p.E95X . . . C3orf26 84319 broad.mit.edu 36 3 101377888 101377888 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167924 exon9 c.T641G p.F214C . . . NIT2 56954 broad.mit.edu 36 3 101547164 101547164 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020202 exon5 c.G382A p.E128K . . . IMPG2 50939 broad.mit.edu 36 3 102446272 102446272 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016247 exon13 c.G1593A p.L531L . . . SENP7 57337 broad.mit.edu 36 3 102529275 102529275 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020654 exon23 c.C2940T p.C980C . . . RG9MTD1 54931 broad.mit.edu 36 3 102766404 102766404 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017819 exon2 c.G89T p.R30I . . . ATP2B2 491 broad.mit.edu 36 3 10417759 10417759 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001683 exon5 c.A659G p.D220G . . . MORC1 27136 broad.mit.edu 36 3 110300981 110300981 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014429 exon6 c.G337T p.D113Y . . . DPPA2 151871 broad.mit.edu 36 3 110506057 110506057 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138815 exon7 c.C809T p.S270F . . . PLCXD2 257068 broad.mit.edu 36 3 112909898 112909898 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153268 exon2 c.G599A p.R200Q . . . TMPRSS7 344805 broad.mit.edu 36 3 113275871 113275871 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042575 exon12 c.G1327T p.D443Y . . . CD200R1 131450 broad.mit.edu 36 3 114149406 114149406 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138939 exon2 c.G123A p.E41E . . . GTPBP8 29083 broad.mit.edu 36 3 114198508 114198508 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014170 exon4 c.G646T p.E216X . . . ZBTB20 26137 broad.mit.edu 36 3 115553341 115553341 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164343 exon11 c.G55A p.E19K . . . ARHGAP31 57514 broad.mit.edu 36 3 120603386 120603386 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020754 exon10 c.G1097A p.R366Q . . . ARHGAP31 57514 broad.mit.edu 36 3 120615714 120615714 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020754 exon12 c.G2248A p.A750T . . . GPR156 165829 broad.mit.edu 36 3 121368752 121368752 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168271 exon9 c.C2250A p.F750L . . . RABL3 285282 broad.mit.edu 36 3 121907598 121907598 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173825 exon4 c.C322T p.R108C . . . POLQ 10721 broad.mit.edu 36 3 122713437 122713437 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon10 c.G1598A p.R533Q . . . POLQ 10721 broad.mit.edu 36 3 122734530 122734530 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon6 c.G957T p.V319V . . . FBXO40 51725 broad.mit.edu 36 3 122823339 122823339 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016298 exon3 c.T373C p.L125L . . . GOLGB1 2804 broad.mit.edu 36 3 122899117 122899117 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.A2928G p.E976E . . . CSTA 1475 broad.mit.edu 36 3 123539095 123539095 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005213 exon2 c.G78A p.Q26Q . . . PARP9 83666 broad.mit.edu 36 3 123754001 123754001 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146103 exon5 c.A1061C p.K354T . . . SEMA5B 54437 broad.mit.edu 36 3 124117138 124117138 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031702 exon14 c.T1827G p.D609E . . . ADCY5 111 broad.mit.edu 36 3 124519564 124519564 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_183357 exon11 c.G2347A p.V783M . . . MYLK 4638 broad.mit.edu 36 3 124858704 124858704 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon24 c.G4247A p.S1416N . . . TSEN2 80746 broad.mit.edu 36 3 12549176 12549176 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025265 exon12 c.C1354T p.R452X . . . KALRN 8997 broad.mit.edu 36 3 125676251 125676251 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003947 exon26 c.A4077G p.G1359G . . . UMPS 7372 broad.mit.edu 36 3 125939735 125939735 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000373 exon3 c.A941C p.K314T . . . HEG1 57493 broad.mit.edu 36 3 126172304 126172304 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020733 exon17 c.G4028A p.R1343Q . . . CHST13 166012 broad.mit.edu 36 3 127737865 127737865 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152889 exon2 c.G159T p.Q53H . . . C3orf25 90288 broad.mit.edu 36 3 130605919 130605919 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207307 exon7 c.G1267T p.D423Y . . . TRH 7200 broad.mit.edu 36 3 131178381 131178381 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007117 exon3 c.G361T p.D121Y . . . ASTE1 28990 broad.mit.edu 36 3 132217810 132217810 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014065 exon5 c.C1577T p.A526V . . . DNAJC13 23317 broad.mit.edu 36 3 133692443 133692443 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015268 exon32 c.G3481T p.D1161Y . . . TF 7018 broad.mit.edu 36 3 134959330 134959330 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001063 exon8 c.G898T p.E300X . . . EPHB1 2047 broad.mit.edu 36 3 136381479 136381479 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004441 exon10 c.T1847C p.V616A . . . STAG1 10274 broad.mit.edu 36 3 137704243 137704243 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005862 exon8 c.A745C p.R249R . . . A4GNT 51146 broad.mit.edu 36 3 139326010 139326010 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016161 exon3 c.G809A p.R270H . . . PIK3CB 5291 broad.mit.edu 36 3 139916063 139916063 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006219 exon7 c.G1239A p.T413T . . . GK5 256356 broad.mit.edu 36 3 143417219 143417219 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039547 exon2 c.A153C p.E51D . . . XRN1 54464 broad.mit.edu 36 3 143513170 143513170 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019001 exon42 c.C4994A p.S1665Y . . . ATR 545 broad.mit.edu 36 3 143751675 143751675 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184 exon14 c.C2965T p.R989C . . . SR140 23350 broad.mit.edu 36 3 144215901 144215901 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080415 exon4 c.G281A p.R94Q . . . PLSCR4 57088 broad.mit.edu 36 3 147400484 147400484 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020353 exon6 c.G430T p.D144Y . . . PLSCR4 57088 broad.mit.edu 36 3 147401536 147401536 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020353 exon5 c.C373A p.L125I . . . HPS3 84343 broad.mit.edu 36 3 150372615 150372615 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032383 exon17 c.C2931A p.F977L . . . CP 1356 broad.mit.edu 36 3 150409847 150409847 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000096 exon4 c.G622T p.E208X . . . GPR87 53836 broad.mit.edu 36 3 152495435 152495435 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023915 exon3 c.C289T p.R97X . . . IGSF10 285313 broad.mit.edu 36 3 152638755 152638755 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178145 exon2 c.G365T p.R122I . . . IGSF10 285313 broad.mit.edu 36 3 152639017 152639017 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178145 exon2 c.G103T p.E35X . . . IGSF10 285313 broad.mit.edu 36 3 152646560 152646560 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178822 exon4 c.G3899T p.S1300I . . . IGSF10 285313 broad.mit.edu 36 3 152649308 152649308 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178822 exon4 c.C1151T p.S384F . . . SUCNR1 56670 broad.mit.edu 36 3 153081666 153081666 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033050 exon3 c.G645T p.K215N . . . METTL6 131965 broad.mit.edu 36 3 15430643 15430643 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152396 exon5 c.C562T p.R188C . . . MME 4311 broad.mit.edu 36 3 156342591 156342591 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000902 exon11 c.C1075A p.L359I . . . CCNL1 57018 broad.mit.edu 36 3 158350011 158350011 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020307 exon9 c.G1090T p.E364X . . . MFSD1 64747 broad.mit.edu 36 3 160009726 160009726 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022736 exon6 c.G652T p.E218X . . . SCHIP1 29970 broad.mit.edu 36 3 160453275 160453275 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197113 exon3 c.A140G p.E47G . . . IFT80 57560 broad.mit.edu 36 3 161556525 161556525 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190242 exon7 c.T336G p.F112L . . . ZBBX 79740 broad.mit.edu 36 3 168498879 168498879 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024687 exon18 c.G1787T p.R596I . . . SERPINI1 5274 broad.mit.edu 36 3 169025737 169025737 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122752 exon9 c.C1165A p.L389I . . . SLC2A2 6514 broad.mit.edu 36 3 172198502 172198502 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000340 exon11 c.A1459G p.T487A . . . SLC2A2 6514 broad.mit.edu 36 3 172205849 172205849 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000340 exon7 c.C882A p.L294L . . . SLC2A2 6514 broad.mit.edu 36 3 172206567 172206567 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000340 exon6 c.T634G p.L212V . . . TNIK 23043 broad.mit.edu 36 3 172395087 172395087 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161565 exon5 c.T338C p.V113A . . . TBC1D5 9779 broad.mit.edu 36 3 17390987 17390987 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134380 exon12 c.T802G p.F268V . . . PIK3CA 5290 broad.mit.edu 36 3 180430594 180430594 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon19 c.C2775T p.D925D . . . MCF2L2 23101 broad.mit.edu 36 3 184430161 184430161 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon17 c.G2032A p.E678K . . . ECE2 9718 broad.mit.edu 36 3 185490742 185490742 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014693 exon14 c.A1911C p.E637D . . . TBCCD1 55171 broad.mit.edu 36 3 187758950 187758950 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134415 exon3 c.A442C p.N148H . . . ATP13A5 344905 broad.mit.edu 36 3 194563070 194563070 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198505 exon4 c.G435T p.E145D . . . ATP13A4 84239 broad.mit.edu 36 3 194642061 194642061 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032279 exon20 c.T2327C p.I776T . . . OPA1 4976 broad.mit.edu 36 3 194857592 194857592 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130832 exon21 c.T1989G p.F663L . . . GP5 2814 broad.mit.edu 36 3 195599791 195599791 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004488 exon2 c.G510A p.E170E . . . TFRC 7037 broad.mit.edu 36 3 197283335 197283335 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003234 exon5 c.C520T p.R174C . . . EFHB 151651 broad.mit.edu 36 3 19899155 19899155 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon12 c.G2219T p.R740I . . . ZNF385D 79750 broad.mit.edu 36 3 21440513 21440513 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024697 exon7 c.G900A p.P300P . . . ZNF385D 79750 broad.mit.edu 36 3 21581083 21581083 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024697 exon3 c.G263T p.R88I . . . NR1D2 9975 broad.mit.edu 36 3 23984439 23984439 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005126 exon7 c.A1464C p.E488D . . . RARB 5915 broad.mit.edu 36 3 25477696 25477696 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000965 exon2 c.A166G p.T56A . . . RARB 5915 broad.mit.edu 36 3 25586292 25586292 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000965 exon4 c.C488T p.S163L . . . OXSM 54995 broad.mit.edu 36 3 25807708 25807708 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017897 exon2 c.C193T p.R65C . . . SLC4A7 9497 broad.mit.edu 36 3 27473150 27473150 + Nonsense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003615 exon1 c.T29G p.L10X . . . IL5RA 3568 broad.mit.edu 36 3 3093234 3093234 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000564 exon11 c.C1072A p.L358I . . . STT3B 201595 broad.mit.edu 36 3 31596353 31596353 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178862 exon3 c.A472C p.N158H . . . CCR4 1233 broad.mit.edu 36 3 32970918 32970918 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005508 exon2 c.C1000A p.L334I . . . ARPP21 10777 broad.mit.edu 36 3 35705870 35705870 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016300 exon7 c.G474T p.K158N . . . ARPP21 10777 broad.mit.edu 36 3 35755950 35755950 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016300 exon17 c.C1782T p.I594I . . . LRRFIP2 9209 broad.mit.edu 36 3 37107970 37107970 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134369 exon7 c.G403T p.E135X . . . EXOG 9941 broad.mit.edu 36 3 38540474 38540474 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145464 exon5 c.G574A p.E192K . . . LRRN1 57633 broad.mit.edu 36 3 3862326 3862326 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020873 exon2 c.G1001A p.R334Q . . . SCN11A 11280 broad.mit.edu 36 3 38863880 38863880 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014139 exon26 c.G4685A p.R1562Q . . . GORASP1 64689 broad.mit.edu 36 3 39114731 39114731 + Nonstop_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031899 exon9 c.A1323C p.X441Y . . . CSRNP1 64651 broad.mit.edu 36 3 39160751 39160751 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033027 exon4 c.C661T p.R221W . . . MYRIP 25924 broad.mit.edu 36 3 40206686 40206686 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015460 exon10 c.G1393A p.E465K . . . ZNF620 253639 broad.mit.edu 36 3 40532904 40532904 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175888 exon5 c.G815T p.R272I . . . CHL1 10752 broad.mit.edu 36 3 406154 406154 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006614 exon20 c.G2467T p.D823Y . . . CTNNB1 1499 broad.mit.edu 36 3 41250653 41250653 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098210 exon10 c.G1544A p.R515Q . . . ULK4 54986 broad.mit.edu 36 3 41952377 41952377 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017886 exon4 c.G298T p.E100X . . . CCDC13 152206 broad.mit.edu 36 3 42762439 42762439 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144719 exon7 c.A805C p.I269L . . . CCBP2 1238 broad.mit.edu 36 3 42881748 42881748 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001296 exon3 c.A750C p.K250N . . . C3orf23 285343 broad.mit.edu 36 3 44409427 44409427 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173826 exon6 c.C649T p.R217C . . . TGM4 7047 broad.mit.edu 36 3 44918324 44918324 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003241 exon8 c.A868G p.T290A . . . CDCP1 64866 broad.mit.edu 36 3 45128829 45128829 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022842 exon3 c.C405T p.I135I . . . CCR9 10803 broad.mit.edu 36 3 45917322 45917322 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006641 exon2 c.T2C p.M1T . . . PRSS42 339906 broad.mit.edu 36 3 46849630 46849630 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182702 exon3 c.G442T p.V148F . . . ITPR1 3708 broad.mit.edu 36 3 4697294 4697294 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon25 c.C2998T p.R1000X . . . ITPR1 3708 broad.mit.edu 36 3 4707962 4707962 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon32 c.C3936A p.F1312L . . . SETD2 29072 broad.mit.edu 36 3 47137853 47137853 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014159 exon3 c.A3277C p.S1093R . . . IMPDH2 3615 broad.mit.edu 36 3 49037381 49037381 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000884 exon11 c.C1247A p.S416Y . . . LAMB2 3913 broad.mit.edu 36 3 49141486 49141486 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002292 exon13 c.A1702C p.I568L . . . RHOA 387 broad.mit.edu 36 3 49372767 49372767 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001664 exon5 c.T461G p.F154C . . . RBM5 10181 broad.mit.edu 36 3 50126435 50126435 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005778 exon19 c.G1666T p.E556X . . . DOCK3 1795 broad.mit.edu 36 3 51102817 51102817 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon9 c.C667A p.L223I . . . DOCK3 1795 broad.mit.edu 36 3 51226594 51226594 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon14 c.T1087C p.S363P . . . DOCK3 1795 broad.mit.edu 36 3 51290196 51290196 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon26 c.C2753T p.A918V . . . ITIH3 3699 broad.mit.edu 36 3 52816021 52816021 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002217 exon19 c.G2121T p.K707N . . . LRTM1 57408 broad.mit.edu 36 3 54933697 54933697 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020678 exon2 c.T593G p.F198C . . . CCDC66 285331 broad.mit.edu 36 3 56576053 56576053 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141947 exon6 c.C746A p.T249N . . . C3orf14 57415 broad.mit.edu 36 3 62294100 62294100 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020685 exon5 c.G383A p.R128Q . . . EPHA3 2042 broad.mit.edu 36 3 89531258 89531258 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005233 exon7 c.C1532T p.A511V . . . STX19 415117 broad.mit.edu 36 3 95216119 95216119 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001850 exon2 c.T685G p.L229V . . . OR5K3 403277 broad.mit.edu 36 3 99592823 99592823 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005516 exon1 c.C624A p.I208I . . . ADH6 130 broad.mit.edu 36 4 100345185 100345185 + Nonstop_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000672 exon8 c.G1023T p.L341F . . . ADH1B 125 broad.mit.edu 36 4 100459028 100459028 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000668 exon2 c.G57T p.K19N . . . BANK1 55024 broad.mit.edu 36 4 103165455 103165455 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017935 exon9 c.G1360T p.E454X . . . NHEDC1 150159 broad.mit.edu 36 4 104130473 104130473 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139173 exon3 c.A144C p.P48P . . . CENPE 1062 broad.mit.edu 36 4 104288060 104288060 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001813 exon29 c.T4036G p.S1346A . . . TET2 54790 broad.mit.edu 36 4 106374974 106374974 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017628 exon3 c.C426T p.S142S . . . PPA2 27068 broad.mit.edu 36 4 106564925 106564925 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006903 exon6 c.C445A p.L149I . . . CFI 3426 broad.mit.edu 36 4 110902153 110902153 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000204 exon4 c.C627T p.F209F . . . ALPK1 80216 broad.mit.edu 36 4 113571464 113571464 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025144 exon11 c.G1312A p.E438K . . . LARP7 51574 broad.mit.edu 36 4 113787491 113787491 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016648 exon5 c.T483G p.S161S . . . ANK2 287 broad.mit.edu 36 4 114451974 114451974 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020977 exon24 c.G2663A p.R888Q . . . ANK2 287 broad.mit.edu 36 4 114458316 114458316 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020977 exon25 c.C2698T p.R900X . . . ANK2 287 broad.mit.edu 36 4 114495305 114495305 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.C6082T p.R2028W . . . NDST3 9348 broad.mit.edu 36 4 119195035 119195035 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004784 exon2 c.C522A p.S174R . . . METTL14 57721 broad.mit.edu 36 4 119835054 119835054 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020961 exon6 c.T428G p.F143C . . . C4orf31 79625 broad.mit.edu 36 4 122176872 122176872 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024574 exon4 c.T1704C p.C568C . . . TNIP3 79931 broad.mit.edu 36 4 122287758 122287758 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128843 exon9 c.T631G p.F211V . . . KIAA1109 84162 broad.mit.edu 36 4 123341639 123341639 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon13 c.G1406A p.R469Q . . . KIAA1109 84162 broad.mit.edu 36 4 123502644 123502644 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015312 exon84 c.C14810A p.S4937Y . . . ADAD1 132612 broad.mit.edu 36 4 123536901 123536901 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139243 exon7 c.G643T p.E215X . . . ANKRD50 57182 broad.mit.edu 36 4 125812327 125812327 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167882 exon3 c.C1018T p.R340X . . . FAT4 79633 broad.mit.edu 36 4 126609229 126609229 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon11 c.G12012A p.T4004T . . . FAT4 79633 broad.mit.edu 36 4 126632273 126632273 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon17 c.A14846C p.D4949A . . . HSPA4L 22824 broad.mit.edu 36 4 128939266 128939266 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014278 exon4 c.G381T p.E127D . . . SCLT1 132320 broad.mit.edu 36 4 130077420 130077420 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144643 exon18 c.C1669T p.R557C . . . SCLT1 132320 broad.mit.edu 36 4 130132775 130132775 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144643 exon9 c.T683G p.L228R . . . BOD1L 259282 broad.mit.edu 36 4 13180743 13180743 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148894 exon26 c.C9146T p.A3049V . . . PCDH10 57575 broad.mit.edu 36 4 134303582 134303582 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon4 c.G2798A p.G933D . . . PCDH18 54510 broad.mit.edu 36 4 138669384 138669384 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon2 c.A2528G p.Y843C . . . PCDH18 54510 broad.mit.edu 36 4 138672433 138672433 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon1 c.G260T p.S87I . . . SMARCA5 8467 broad.mit.edu 36 4 144667061 144667061 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003601 exon6 c.A799C p.R267R . . . GYPE 2996 broad.mit.edu 36 4 145017398 145017398 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002102 exon3 c.T197C p.V66A . . . PRMT10 90826 broad.mit.edu 36 4 148779285 148779285 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138364 exon12 c.G2386T p.E796X . . . LRBA 987 broad.mit.edu 36 4 151993137 151993137 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006726 exon23 c.G3175A p.A1059T . . . FBXW7 55294 broad.mit.edu 36 4 153552365 153552365 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033632 exon2 c.G41A p.R14Q . . . TMEM154 201799 broad.mit.edu 36 4 153793338 153793338 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152680 exon2 c.T256G p.L86V . . . KIAA0922 23240 broad.mit.edu 36 4 154752997 154752997 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon26 c.G3559A p.V1187I . . . KIAA0922 23240 broad.mit.edu 36 4 154777046 154777046 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon35 c.C4698T p.V1566V . . . TLR2 7097 broad.mit.edu 36 4 154844009 154844009 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003264 exon3 c.G500T p.R167I . . . DCHS2 54798 broad.mit.edu 36 4 155438796 155438796 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon18 c.G4755T p.Q1585H . . . RBM46 166863 broad.mit.edu 36 4 155939698 155939698 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144979 exon4 c.G934T p.E312X . . . GUCY1B3 2983 broad.mit.edu 36 4 156936037 156936037 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000857 exon7 c.C821T p.T274I . . . GRIA2 2891 broad.mit.edu 36 4 158476440 158476440 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083620 exon10 c.G1293A p.T431T . . . GRIA2 2891 broad.mit.edu 36 4 158503528 158503528 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083620 exon15 c.G2393A p.R798Q . . . TMEM144 55314 broad.mit.edu 36 4 159353337 159353337 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018342 exon3 c.G68A p.G23D . . . PPID 5481 broad.mit.edu 36 4 159859850 159859850 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005038 exon3 c.A265C p.N89H . . . FNIP2 57600 broad.mit.edu 36 4 160036397 160036397 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020840 exon16 c.A3196C p.S1066R . . . RAPGEF2 9693 broad.mit.edu 36 4 160483789 160483789 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon15 c.G2644A p.E882K . . . PALLD 23022 broad.mit.edu 36 4 170082787 170082787 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016081 exon19 c.C3290T p.A1097V . . . NEK1 4750 broad.mit.edu 36 4 170748475 170748475 + Missense_Mutation SNP G T T rs56850122 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199400 exon5 c.C373A p.L125I . . . GALNTL6 442117 broad.mit.edu 36 4 174109862 174109862 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034845 exon10 c.G1249A p.A417T . . . SCRG1 11341 broad.mit.edu 36 4 174549027 174549027 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007281 exon2 c.T114C p.C38C . . . GLRA3 8001 broad.mit.edu 36 4 175801547 175801547 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042543 exon9 c.C1315A p.L439I . . . GPM6A 2823 broad.mit.edu 36 4 176809980 176809980 + Missense_Mutation SNP A T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201591 exon4 c.T540A p.F180L . . . VEGFC 7424 broad.mit.edu 36 4 177846002 177846002 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005429 exon5 c.G778T p.E260X . . . ODZ3 55714 broad.mit.edu 36 4 183839985 183839985 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon10 c.C1859A p.S620Y . . . ODZ3 55714 broad.mit.edu 36 4 183912610 183912610 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon21 c.T4096C p.L1366L . . . ODZ3 55714 broad.mit.edu 36 4 183950636 183950636 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon25 c.C5817A p.F1939L . . . ODZ3 55714 broad.mit.edu 36 4 183950930 183950930 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon25 c.G6111A p.T2037T . . . ODZ3 55714 broad.mit.edu 36 4 183951053 183951053 + Silent SNP G A A rs61746883 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon25 c.G6234A p.T2078T . . . ODZ3 55714 broad.mit.edu 36 4 183951706 183951706 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon25 c.C6887T p.S2296L . . . MLF1IP 79682 broad.mit.edu 36 4 185853533 185853533 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024629 exon13 c.T1160G p.L387R . . . SLIT2 9353 broad.mit.edu 36 4 20152292 20152292 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004787 exon20 c.G2095T p.E699X . . . SLIT2 9353 broad.mit.edu 36 4 20229652 20229652 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004787 exon37 c.C4512T p.F1504F . . . PI4K2B 55300 broad.mit.edu 36 4 24863063 24863063 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018323 exon2 c.G291T p.M97I . . . RBPJ 3516 broad.mit.edu 36 4 26016906 26016906 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203284 exon4 c.G68A p.R23Q . . . RBPJ 3516 broad.mit.edu 36 4 26040655 26040655 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203284 exon10 c.T923C p.I308T . . . NOP14 8602 broad.mit.edu 36 4 2929197 2929197 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003703 exon2 c.C264T p.F88F . . . ARAP2 116984 broad.mit.edu 36 4 35802946 35802946 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015230 exon22 c.G3679T p.A1227S . . . ARAP2 116984 broad.mit.edu 36 4 35855891 35855891 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015230 exon9 c.T1810G p.F604V . . . ARAP2 116984 broad.mit.edu 36 4 35865577 35865577 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015230 exon8 c.G1569A p.S523S . . . ARAP2 116984 broad.mit.edu 36 4 35890490 35890490 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015230 exon5 c.G1056T p.K352N . . . TLR10 81793 broad.mit.edu 36 4 38451681 38451681 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030956 exon4 c.A1926G p.E642E . . . UGDH 7358 broad.mit.edu 36 4 39199413 39199413 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184700 exon2 c.G115T p.E39X . . . SHISA3 152573 broad.mit.edu 36 4 42097924 42097924 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080505 exon2 c.G416A p.R139H . . . ZNF721 170960 broad.mit.edu 36 4 426610 426610 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.G1646T p.R549I . . . LYAR 55646 broad.mit.edu 36 4 4321236 4321236 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145725 exon9 c.C927A p.F309L . . . ATP10D 57205 broad.mit.edu 36 4 47209538 47209538 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020453 exon2 c.G224A p.R75Q . . . CNGA1 1259 broad.mit.edu 36 4 47633277 47633277 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000087 exon11 c.A1991C p.K664T . . . CNGA1 1259 broad.mit.edu 36 4 47637561 47637561 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000087 exon10 c.G640A p.D214N . . . TEC 7006 broad.mit.edu 36 4 47842250 47842250 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003215 exon13 c.C1185T p.V395V . . . TEC 7006 broad.mit.edu 36 4 47867065 47867065 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003215 exon5 c.A411C p.E137D . . . USP46 64854 broad.mit.edu 36 4 53159619 53159619 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022832 exon8 c.C931T p.R311C . . . PDGFRA 5156 broad.mit.edu 36 4 54822077 54822077 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon3 c.A108G p.E36E . . . PDGFRA 5156 broad.mit.edu 36 4 54839317 54839317 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon15 c.C2034A p.F678L . . . REST 5978 broad.mit.edu 36 4 57472113 57472113 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193508 exon2 c.G552T p.K184N . . . CRMP1 1400 broad.mit.edu 36 4 5881135 5881135 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001313 exon12 c.C1443T p.R481R . . . LPHN3 23284 broad.mit.edu 36 4 62362155 62362155 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon6 c.C1229A p.S410Y . . . LPHN3 23284 broad.mit.edu 36 4 62586097 62586097 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon21 c.T3441C p.S1147S . . . EPHA5 2044 broad.mit.edu 36 4 65962724 65962724 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon7 c.T1560G p.S520S . . . TMPRSS11F 389208 broad.mit.edu 36 4 68613029 68613029 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207407 exon8 c.C984T p.F328F . . . TMPRSS11F 389208 broad.mit.edu 36 4 68613192 68613192 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207407 exon8 c.G821A p.R274Q . . . TMPRSS11B 132724 broad.mit.edu 36 4 68777174 68777174 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182502 exon9 c.G970T p.E324X . . . UGT2B17 7367 broad.mit.edu 36 4 69113979 69113979 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077 exon2 c.G779A p.R260Q . . . UGT2B7 7364 broad.mit.edu 36 4 69997203 69997203 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001074 exon1 c.T376C p.F126L . . . UGT2A1 10941 broad.mit.edu 36 4 70547321 70547321 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006798 exon1 c.A631C p.R211R . . . ENAM 10117 broad.mit.edu 36 4 71727461 71727461 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031889 exon9 c.T1454G p.F485C . . . ADAMTS3 9508 broad.mit.edu 36 4 73633394 73633394 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon3 c.C169A p.L57I . . . ALB 213 broad.mit.edu 36 4 74498038 74498038 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000477 exon8 c.C881T p.S294L . . . ALB 213 broad.mit.edu 36 4 74504217 74504217 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000477 exon13 c.G1782T p.E594D . . . ART3 419 broad.mit.edu 36 4 77222593 77222593 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001179 exon3 c.G662T p.R221I . . . CCDC158 339965 broad.mit.edu 36 4 77466135 77466135 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042784 exon22 c.C3056T p.S1019F . . . CNOT6L 246175 broad.mit.edu 36 4 78882391 78882391 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144571 exon8 c.C800A p.S267X . . . C4orf22 255119 broad.mit.edu 36 4 82085100 82085100 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152770 exon5 c.C589A p.L197I . . . BMP3 651 broad.mit.edu 36 4 82186629 82186629 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001201 exon2 c.C1030T p.R344W . . . THAP9 79725 broad.mit.edu 36 4 84046695 84046695 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024672 exon3 c.G471T p.K157N . . . ACOX3 8310 broad.mit.edu 36 4 8449676 8449676 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon9 c.C944T p.A315V . . . ACOX3 8310 broad.mit.edu 36 4 8452276 8452276 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon8 c.C780T p.F260F . . . AGPAT9 84803 broad.mit.edu 36 4 84721827 84721827 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032717 exon3 c.C297A p.F99L . . . CDS1 1040 broad.mit.edu 36 4 85757828 85757828 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001263 exon4 c.A430C p.T144P . . . CDS1 1040 broad.mit.edu 36 4 85774036 85774036 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001263 exon7 c.C642T p.F214F . . . MAPK10 5602 broad.mit.edu 36 4 87242142 87242142 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138981 exon2 c.C58T p.R20X . . . AFF1 4299 broad.mit.edu 36 4 88271980 88271980 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166693 exon18 c.C3113A p.S1038X . . . ABCG2 9429 broad.mit.edu 36 4 89237749 89237749 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004827 exon13 c.G1527T p.M509I . . . ABCG2 9429 broad.mit.edu 36 4 89241417 89241417 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004827 exon11 c.G1356T p.K452N . . . HERC6 55008 broad.mit.edu 36 4 89548731 89548731 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017912 exon11 c.A1306G p.T436A . . . HERC3 8916 broad.mit.edu 36 4 89818247 89818247 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014606 exon19 c.T2135C p.V712A . . . FAM13A 10144 broad.mit.edu 36 4 90078270 90078270 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014883 exon5 c.A751G p.I251V . . . FAM190A 401145 broad.mit.edu 36 4 91448893 91448893 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145065 exon2 c.G435T p.K145N . . . SLC2A9 56606 broad.mit.edu 36 4 9445699 9445699 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001290 exon12 c.C1236A p.F412L . . . SMARCAD1 56916 broad.mit.edu 36 4 95418821 95418821 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128429 exon18 c.G2210A p.R737Q . . . BMPR1B 658 broad.mit.edu 36 4 96288996 96288996 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001203 exon11 c.A1151G p.D384G . . . UNC5C 8633 broad.mit.edu 36 4 96325268 96325268 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003728 exon13 c.G2239A p.D747N . . . PDHA2 5161 broad.mit.edu 36 4 96981118 96981118 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005390 exon1 c.A794C p.K265T . . . C4orf37 285555 broad.mit.edu 36 4 99274598 99274598 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174952 exon2 c.G145T p.E49X . . . RAP1GDS1 5910 broad.mit.edu 36 4 99483317 99483317 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100428 exon3 c.G120A p.T40T . . . FAM193B 54540 broad.mit.edu 36 5 176896136 176896137 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001190946 exon4 c.905_906insC p.H302fs . . . ST8SIA4 7903 broad.mit.edu 36 5 100259333 100259333 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175052 exon2 c.C169T p.R57X . . . SLCO6A1 133482 broad.mit.edu 36 5 101862130 101862130 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173488 exon1 c.C318T p.R106R . . . MAN2A1 4124 broad.mit.edu 36 5 109228696 109228696 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002372 exon21 c.C3232T p.R1078W . . . EPB41L4A 64097 broad.mit.edu 36 5 111532657 111532657 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022140 exon21 c.G1784A p.R595Q . . . EPB41L4A 64097 broad.mit.edu 36 5 111604401 111604401 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022140 exon10 c.C801T p.N267N . . . EPB41L4A 64097 broad.mit.edu 36 5 111782603 111782603 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022140 exon1 c.T33G p.F11L . . . APC 324 broad.mit.edu 36 5 112202530 112202530 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C3286T p.R1096X APC,large_intestine,colon,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112202673 112202673 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.T3429G p.N1143K . . . DCP2 167227 broad.mit.edu 36 5 112364689 112364689 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152624 exon5 c.G442T p.E148X . . . MCC 4163 broad.mit.edu 36 5 112427754 112427754 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085377 exon14 c.C2039T p.S680L . . . CCDC112 153733 broad.mit.edu 36 5 114639648 114639648 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040440 exon5 c.G469T p.E157X . . . CDO1 1036 broad.mit.edu 36 5 115174788 115174788 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001801 exon3 c.C372A p.V124V . . . DMXL1 1657 broad.mit.edu 36 5 118461642 118461642 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005509 exon2 c.G157A p.A53T . . . DMXL1 1657 broad.mit.edu 36 5 118534591 118534591 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005509 exon24 c.C6206T p.A2069V . . . SRFBP1 153443 broad.mit.edu 36 5 121384223 121384223 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152546 exon6 c.T894G p.S298R . . . MEGF10 84466 broad.mit.edu 36 5 126704205 126704205 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032446 exon5 c.C303T p.S101S . . . CTXN3 613212 broad.mit.edu 36 5 127021341 127021341 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048252 exon3 c.G229A p.D77N . . . SLC27A6 28965 broad.mit.edu 36 5 128353954 128353954 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon4 c.G867T p.K289N . . . SLC27A6 28965 broad.mit.edu 36 5 128379480 128379480 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon5 c.G973A p.E325K . . . IL5 3567 broad.mit.edu 36 5 131905711 131905711 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000879 exon3 c.C201T p.I67I . . . RAD50 10111 broad.mit.edu 36 5 131939484 131939484 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005732 exon3 c.A330C p.E110D . . . RAD50 10111 broad.mit.edu 36 5 131951269 131951269 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005732 exon6 c.G873T p.E291D . . . GDF9 2661 broad.mit.edu 36 5 132225506 132225506 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005260 exon2 c.C1039A p.L347I . . . HSPA4 3308 broad.mit.edu 36 5 132452009 132452009 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002154 exon9 c.G1000A p.D334N . . . FSTL4 23105 broad.mit.edu 36 5 132676266 132676266 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015082 exon6 c.C706A p.R236S . . . PKD2L2 27039 broad.mit.edu 36 5 137285237 137285237 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014386 exon9 c.C1342T p.R448X . . . FAM13B 51306 broad.mit.edu 36 5 137309884 137309884 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016603 exon18 c.C2110A p.H704N . . . BRD8 10902 broad.mit.edu 36 5 137516168 137516168 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139199 exon21 c.G2758T p.E920X . . . ETF1 2107 broad.mit.edu 36 5 137875085 137875085 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004730 exon7 c.C840A p.F280L . . . ETF1 2107 broad.mit.edu 36 5 137876377 137876377 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004730 exon6 c.T707G p.L236R . . . LRRTM2 26045 broad.mit.edu 36 5 138238019 138238019 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015564 exon2 c.C130T p.L44F . . . DNAJC18 202052 broad.mit.edu 36 5 138788642 138788642 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152686 exon5 c.G620A p.R207Q . . . NRG2 9542 broad.mit.edu 36 5 139225379 139225379 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013982 exon5 c.C1128A p.F376L . . . DNAH5 1767 broad.mit.edu 36 5 13938136 13938136 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon19 c.G2945A p.R982H . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139818968 139818968 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017747 exon9 c.G1516T p.E506X . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139846748 139846748 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017747 exon14 c.A2164G p.T722A . . . PCDHA2 56146 broad.mit.edu 36 5 140156417 140156417 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018905 exon1 c.G1684A p.A562T . . . PCDHA3 56145 broad.mit.edu 36 5 140163441 140163441 + Nonstop_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031497 exon1 c.A2475C p.X825Y . . . PCDHA12 56137 broad.mit.edu 36 5 140236052 140236052 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031864 exon1 c.G811A p.E271K . . . PCDHB3 56132 broad.mit.edu 36 5 140461491 140461491 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018937 exon1 c.G1074T p.E358D . . . PCDHB3 56132 broad.mit.edu 36 5 140462660 140462660 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018937 exon1 c.G2243A p.S748N . . . PCDHB7 56129 broad.mit.edu 36 5 140534050 140534050 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018940 exon1 c.G1450A p.A484T . . . PCDHB8 56128 broad.mit.edu 36 5 140538502 140538502 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.G703A p.D235N . . . PCDHGA2 56113 broad.mit.edu 36 5 140700168 140700168 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032009 exon1 c.C1446T p.N482N . . . FCHSD1 89848 broad.mit.edu 36 5 141004401 141004401 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033449 exon16 c.G1565A p.R522Q . . . NDFIP1 80762 broad.mit.edu 36 5 141495488 141495488 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030571 exon4 c.T292G p.F98V . . . TCERG1 10915 broad.mit.edu 36 5 145818786 145818786 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040006 exon4 c.G585A p.A195A . . . PPP2R2B 5521 broad.mit.edu 36 5 145960204 145960204 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127381 exon8 c.C803T p.P268L . . . SPINK5 11005 broad.mit.edu 36 5 147474136 147474136 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127699 exon21 c.C1906T p.R636W . . . SPINK5 11005 broad.mit.edu 36 5 147483661 147483661 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127699 exon27 c.C2611T p.R871X . . . FBXO38 81545 broad.mit.edu 36 5 147770436 147770436 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205836 exon9 c.C1008A p.V336V . . . PDE6A 5145 broad.mit.edu 36 5 149304220 149304220 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000440 exon1 c.G210T p.E70D . . . SLC26A2 1836 broad.mit.edu 36 5 149340307 149340307 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000112 exon3 c.G958T p.E320X . . . SLC26A2 1836 broad.mit.edu 36 5 149341205 149341205 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000112 exon3 c.G1856T p.R619I . . . ZNF300 91975 broad.mit.edu 36 5 150255372 150255372 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172831 exon7 c.G1670A p.R557Q . . . NMUR2 56923 broad.mit.edu 36 5 151751982 151751982 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020167 exon4 c.G1211T p.R404I . . . LARP1 23367 broad.mit.edu 36 5 154173825 154173825 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015315 exon19 c.G3036A p.S1012S . . . HAVCR2 84868 broad.mit.edu 36 5 156466349 156466349 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032782 exon2 c.T261G p.D87E . . . EBF1 1879 broad.mit.edu 36 5 158072709 158072709 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024007 exon13 c.G1216A p.D406N . . . SLU7 10569 broad.mit.edu 36 5 159767609 159767609 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006425 exon9 c.A864C p.K288N . . . SLU7 10569 broad.mit.edu 36 5 159768242 159768242 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006425 exon7 c.C680A p.S227Y . . . ATP10B 23120 broad.mit.edu 36 5 160045676 160045676 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025153 exon6 c.G458A p.R153Q . . . HMMR 3161 broad.mit.edu 36 5 162829339 162829339 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012485 exon4 c.C340A p.L114I . . . ODZ2 57451 broad.mit.edu 36 5 167558652 167558652 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon16 c.C3090A p.F1030L . . . DOCK2 1794 broad.mit.edu 36 5 169055420 169055420 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon10 c.T879G p.I293M . . . DOCK2 1794 broad.mit.edu 36 5 169437365 169437365 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon48 c.C4940A p.S1647Y . . . FOXI1 2299 broad.mit.edu 36 5 169465811 169465811 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144769 exon1 c.T272G p.V91G . . . FOXI1 2299 broad.mit.edu 36 5 169467677 169467677 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012188 exon2 c.C621T p.F207F . . . C5orf58 133874 broad.mit.edu 36 5 169593735 169593735 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102609 exon2 c.A18C p.E6D . . . LCP2 3937 broad.mit.edu 36 5 169622430 169622430 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005565 exon12 c.C812T p.A271V . . . GABRP 2568 broad.mit.edu 36 5 170171559 170171559 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014211 exon10 c.G1042T p.E348X . . . FBXW11 23291 broad.mit.edu 36 5 171236011 171236011 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033645 exon7 c.G939A p.M313I . . . STK10 6793 broad.mit.edu 36 5 171466273 171466273 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005990 exon6 c.G744T p.K248N . . . NSD1 64324 broad.mit.edu 36 5 176495432 176495432 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022455 exon2 c.G722T p.R241I . . . ZNF354B 117608 broad.mit.edu 36 5 178242446 178242446 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058230 exon5 c.G387T p.E129D . . . ZFP2 80108 broad.mit.edu 36 5 178291369 178291369 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030613 exon5 c.G449T p.R150I . . . MAML1 9794 broad.mit.edu 36 5 179133548 179133548 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014757 exon5 c.C2115A p.N705K . . . MAPK9 5601 broad.mit.edu 36 5 179595990 179595990 + Nonstop_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139070 exon12 c.A1275C p.X425C . . . PLEKHG4B 153478 broad.mit.edu 36 5 208502 208502 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052909 exon7 c.T1084G p.F362V . . . CDH12 1010 broad.mit.edu 36 5 21796453 21796453 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004061 exon13 c.A1604C p.K535T . . . PLEKHG4B 153478 broad.mit.edu 36 5 226017 226017 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052909 exon15 c.T2988G p.N996K . . . PRDM9 56979 broad.mit.edu 36 5 23559174 23559174 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon9 c.C900A p.N300K . . . PRDM9 56979 broad.mit.edu 36 5 23560260 23560260 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon10 c.G1011A p.R337R . . . PRDM9 56979 broad.mit.edu 36 5 23562341 23562341 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon11 c.T1387G p.L463V . . . CDH9 1007 broad.mit.edu 36 5 26926417 26926417 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon8 c.C1267T p.R423W . . . CDH9 1007 broad.mit.edu 36 5 26951562 26951562 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon3 c.C456A p.I152I . . . DROSHA 29102 broad.mit.edu 36 5 31522385 31522385 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon13 c.G1884A p.T628T . . . PDZD2 23037 broad.mit.edu 36 5 32126990 32126990 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon19 c.C7679T p.T2560M . . . MTMR12 54545 broad.mit.edu 36 5 32269671 32269671 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040446 exon15 c.C1639A p.L547M . . . ZFR 51663 broad.mit.edu 36 5 32431164 32431164 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016107 exon11 c.A1837C p.K613Q . . . TARS 6897 broad.mit.edu 36 5 33493237 33493237 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152295 exon9 c.A956C p.K319T . . . ADAMTS12 81792 broad.mit.edu 36 5 33585211 33585211 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon21 c.G4160A p.R1387H . . . ADAMTS12 81792 broad.mit.edu 36 5 33612989 33612989 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon19 c.C2899T p.R967C . . . SPEF2 79925 broad.mit.edu 36 5 35795527 35795527 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024867 exon25 c.G3569A p.R1190Q . . . SKP2 6502 broad.mit.edu 36 5 36204202 36204202 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032637 exon5 c.G567A p.S189S . . . NIPBL 25836 broad.mit.edu 36 5 37020919 37020919 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon10 c.A1880C p.E627A . . . C5orf42 65250 broad.mit.edu 36 5 37219045 37219045 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon26 c.G4995A p.S1665S . . . LIFR 3977 broad.mit.edu 36 5 38518021 38518021 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127671 exon20 c.G2727A p.E909E . . . FYB 2533 broad.mit.edu 36 5 39170811 39170811 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199335 exon8 c.G1578T p.K526N . . . C9 735 broad.mit.edu 36 5 39347231 39347231 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001737 exon7 c.A876C p.K292N . . . C7 730 broad.mit.edu 36 5 40972328 40972328 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000587 exon5 c.G412T p.E138X . . . C6 729 broad.mit.edu 36 5 41212341 41212341 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000065 exon8 c.G1161T p.K387N . . . HCN1 348980 broad.mit.edu 36 5 45339525 45339525 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon6 c.C1551T p.H517H . . . IL6ST 3572 broad.mit.edu 36 5 55272763 55272763 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190981 exon16 c.A2478C p.R826S . . . ANKRD55 79722 broad.mit.edu 36 5 55443086 55443086 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024669 exon10 c.T1246C p.Y416H . . . HTR1A 3350 broad.mit.edu 36 5 63292663 63292663 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000524 exon1 c.C640A p.L214I . . . SREK1IP1 285672 broad.mit.edu 36 5 64072689 64072689 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173829 exon3 c.C156T p.S52S . . . ERBB2IP 55914 broad.mit.edu 36 5 65382388 65382388 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018695 exon20 c.C1925A p.S642Y . . . PIK3R1 5295 broad.mit.edu 36 5 67624707 67624707 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181523 exon8 c.C1042T p.R348X . . . PIK3R1 5295 broad.mit.edu 36 5 67624924 67624924 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181523 exon9 c.C1156T p.R386X . . . MAP1B 4131 broad.mit.edu 36 5 71526319 71526319 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.C1381A p.L461I . . . MAP1B 4131 broad.mit.edu 36 5 71527158 71527158 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G2220T p.K740N . . . MAP1B 4131 broad.mit.edu 36 5 71528498 71528498 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.C3560A p.S1187Y . . . MAP1B 4131 broad.mit.edu 36 5 71529046 71529046 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G4108T p.D1370Y . . . MAP1B 4131 broad.mit.edu 36 5 71529892 71529892 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G4954T p.E1652X . . . MAP1B 4131 broad.mit.edu 36 5 71530059 71530059 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G5121T p.E1707D . . . ZNF366 167465 broad.mit.edu 36 5 71792414 71792414 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152625 exon2 c.C666T p.S222S . . . FAM169A 26049 broad.mit.edu 36 5 74173207 74173207 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015566 exon2 c.A51C p.E17D . . . POLK 51426 broad.mit.edu 36 5 74928253 74928253 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016218 exon13 c.C1979T p.S660L . . . F2RL2 2151 broad.mit.edu 36 5 75950148 75950148 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004101 exon2 c.C140A p.S47Y . . . AP3B1 8546 broad.mit.edu 36 5 77370698 77370698 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003664 exon23 c.C2734T p.R912X . . . DMGDH 29958 broad.mit.edu 36 5 78358115 78358115 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon13 c.C2078T p.A693V . . . CMYA5 202333 broad.mit.edu 36 5 79063228 79063228 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.A2884C p.T962P . . . CMYA5 202333 broad.mit.edu 36 5 79064581 79064581 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.C4237A p.L1413I . . . CMYA5 202333 broad.mit.edu 36 5 79065586 79065586 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.T5242G p.L1748V . . . CMYA5 202333 broad.mit.edu 36 5 79066818 79066818 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.A6474G p.Q2158Q . . . CMYA5 202333 broad.mit.edu 36 5 79066972 79066972 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.G6628A p.V2210I . . . CMYA5 202333 broad.mit.edu 36 5 79070055 79070055 + Nonsense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.T9711G p.Y3237X . . . FASTKD3 79072 broad.mit.edu 36 5 7919830 7919830 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024091 exon2 c.C1367A p.S456X . . . MTRR 4552 broad.mit.edu 36 5 7931150 7931150 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002454 exon5 c.C495T p.G165G . . . SPZ1 84654 broad.mit.edu 36 5 79652415 79652415 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032567 exon1 c.G625T p.D209Y . . . DHFR 1719 broad.mit.edu 36 5 79980980 79980980 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000791 exon3 c.C226A p.L76I . . . RASGRF2 5924 broad.mit.edu 36 5 80445193 80445193 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006909 exon15 c.G2168A p.R723H . . . RASGRF2 5924 broad.mit.edu 36 5 80551310 80551310 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006909 exon26 c.G3578A p.R1193H . . . ZCCHC9 84240 broad.mit.edu 36 5 80636521 80636521 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001131036 exon2 c.G189T p.K63N . . . VCAN 1462 broad.mit.edu 36 5 82851975 82851975 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164098 exon7 c.T2094G p.T698T . . . VCAN 1462 broad.mit.edu 36 5 82852694 82852694 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164098 exon7 c.C2813A p.S938Y . . . VCAN 1462 broad.mit.edu 36 5 82853010 82853010 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164098 exon7 c.G3129A p.E1043E . . . VCAN 1462 broad.mit.edu 36 5 82872321 82872321 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164097 exon7 c.T4782A p.D1594E . . . MEF2C 4208 broad.mit.edu 36 5 88054275 88054275 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193350 exon11 c.G1324A p.E442K MEF2C,lung,NS,Substitution - Missense,0 . . GPR98 84059 broad.mit.edu 36 5 89974544 89974544 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon13 c.T2483C p.V828A . . . GPR98 84059 broad.mit.edu 36 5 90122806 90122806 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon70 c.C14404T p.R4802X . . . GPR98 84059 broad.mit.edu 36 5 90172178 90172178 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon78 c.C16639T p.R5547C MASS1,central_nervous_system,brain,Substitution - Missense,-1 . . C5orf36 285600 broad.mit.edu 36 5 93881766 93881766 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145678 exon5 c.C913T p.R305C . . . MCTP1 79772 broad.mit.edu 36 5 94229836 94229836 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001002796 exon17 c.C1731T p.C577C . . . ELL2 22936 broad.mit.edu 36 5 95262465 95262465 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012081 exon6 c.C817T p.P273S . . . TAS2R1 50834 broad.mit.edu 36 5 9682596 9682596 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019599 exon1 c.C549A p.F183L . . . GRIK2 2898 broad.mit.edu 36 6 101953958 101953958 + Nonsense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021956 exon1 c.T84G p.Y28X . . . GRIK2 2898 broad.mit.edu 36 6 102610093 102610093 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021956 exon15 c.T2507G p.F836C . . . GRIK2 2898 broad.mit.edu 36 6 102623061 102623061 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021956 exon16 c.T2709C p.G903G . . . BVES 11149 broad.mit.edu 36 6 105671289 105671289 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007073 exon6 c.G796T p.D266Y . . . BVES 11149 broad.mit.edu 36 6 105688137 105688137 + Nonsense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007073 exon2 c.T9G p.Y3X . . . BEND3 57673 broad.mit.edu 36 6 107526474 107526474 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080450 exon4 c.G214A p.V72M . . . SCML4 256380 broad.mit.edu 36 6 108148719 108148719 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198081 exon6 c.C854T p.A285V . . . NR2E1 7101 broad.mit.edu 36 6 108609490 108609490 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003269 exon8 c.G937A p.A313T . . . CDC40 51362 broad.mit.edu 36 6 110640145 110640145 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015891 exon7 c.C844A p.H282N . . . SLC22A16 85413 broad.mit.edu 36 6 110870326 110870326 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033125 exon4 c.C997T p.P333S . . . RFPL4B 442247 broad.mit.edu 36 6 112778237 112778237 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013734 exon3 c.G634T p.D212Y . . . FRK 2444 broad.mit.edu 36 6 116396500 116396500 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002031 exon3 c.G562A p.E188K . . . RFX6 222546 broad.mit.edu 36 6 117347124 117347124 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon11 c.G1154A p.R385Q . . . RFX6 222546 broad.mit.edu 36 6 117352528 117352528 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon15 c.C1559A p.S520Y . . . MCM9 254394 broad.mit.edu 36 6 119286724 119286724 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153255 exon3 c.C572T p.S191L . . . FAM184A 79632 broad.mit.edu 36 6 119343197 119343197 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon10 c.G2106T p.Q702H . . . FAM184A 79632 broad.mit.edu 36 6 119374223 119374223 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon6 c.G1603T p.E535X . . . FAM184A 79632 broad.mit.edu 36 6 119387587 119387587 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon2 c.C250A p.L84I . . . C6orf170 221322 broad.mit.edu 36 6 121619097 121619097 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon16 c.G1767A p.S589S . . . C6orf170 221322 broad.mit.edu 36 6 121642055 121642055 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon15 c.T1644C p.H548H . . . FABP7 2173 broad.mit.edu 36 6 123146592 123146592 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001446 exon4 c.G380A p.R127H . . . LAMA2 3908 broad.mit.edu 36 6 129836092 129836092 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon52 c.G7341A p.E2447E . . . L3MBTL3 84456 broad.mit.edu 36 6 130431182 130431182 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032438 exon12 c.G1015T p.E339X . . . ENPP1 5167 broad.mit.edu 36 6 132249551 132249551 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006208 exon24 c.C2601T p.S867S . . . STX7 8417 broad.mit.edu 36 6 132835170 132835170 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003569 exon4 c.G193T p.E65X . . . TAAR5 9038 broad.mit.edu 36 6 132951530 132951530 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003967 exon1 c.G989A p.R330H . . . SGK1 6446 broad.mit.edu 36 6 134680282 134680282 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143676 exon1 c.A10G p.K4E . . . AHI1 54806 broad.mit.edu 36 6 135720993 135720993 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017651 exon23 c.T3135G p.P1045P . . . MAP7 9053 broad.mit.edu 36 6 136735405 136735405 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198614 exon9 c.C869T p.S290L . . . SIRT5 23408 broad.mit.edu 36 6 13696557 13696557 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193267 exon4 c.G131A p.R44Q . . . ECT2L 345930 broad.mit.edu 36 6 139248347 139248347 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077706 exon17 c.G2040T p.M680I . . . HIVEP2 3097 broad.mit.edu 36 6 143134925 143134925 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.C2644T p.R882W . . . PEX3 8504 broad.mit.edu 36 6 143841981 143841981 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003630 exon10 c.C894A p.F298L . . . LTV1 84946 broad.mit.edu 36 6 144225928 144225928 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032860 exon10 c.C1129T p.R377X . . . UTRN 7402 broad.mit.edu 36 6 144884869 144884869 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon39 c.C5602T p.L1868F . . . SASH1 23328 broad.mit.edu 36 6 148888152 148888152 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015278 exon11 c.G1242A p.T414T . . . SYNE1 23345 broad.mit.edu 36 6 152779477 152779477 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon41 c.C5809A p.L1937I . . . RGS17 26575 broad.mit.edu 36 6 153374504 153374504 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012419 exon5 c.G531A p.Q177Q . . . TAGAP 117289 broad.mit.edu 36 6 159377169 159377169 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054114 exon10 c.C1874T p.A625V . . . WTAP 9589 broad.mit.edu 36 6 160080015 160080015 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004906 exon3 c.C34T p.R12X . . . TCP1 6950 broad.mit.edu 36 6 160120067 160120067 + Nonstop_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030752 exon12 c.A1671C p.X557C . . . MAS1 4142 broad.mit.edu 36 6 160248339 160248339 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002377 exon1 c.A362G p.Y121C . . . IGF2R 3482 broad.mit.edu 36 6 160388919 160388919 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon17 c.G2335A p.D779N . . . MAP3K4 4216 broad.mit.edu 36 6 161447583 161447583 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon19 c.C3754T p.R1252X . . . PARK2 5071 broad.mit.edu 36 6 162395128 162395128 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004562 exon5 c.C603T p.C201C . . . C6orf118 168090 broad.mit.edu 36 6 165643048 165643048 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144980 exon1 c.G18A p.E6E . . . KIF25 3834 broad.mit.edu 36 6 168183612 168183612 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030615 exon6 c.G513A p.S171S . . . HIST1H2BB 3018 broad.mit.edu 36 6 26151567 26151567 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021062 exon1 c.C298T p.R100C . . . HFE 3077 broad.mit.edu 36 6 26199183 26199183 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139004 exon2 c.G212A p.R71Q . . . BTN3A2 11118 broad.mit.edu 36 6 26478768 26478768 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197249 exon4 c.T547C p.S183P . . . ZSCAN16 80345 broad.mit.edu 36 6 28201446 28201446 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025231 exon2 c.C246T p.D82D . . . ZKSCAN4 387032 broad.mit.edu 36 6 28321555 28321555 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019110 exon5 c.G956A p.R319Q . . . GPX6 257202 broad.mit.edu 36 6 28580160 28580160 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182701 exon5 c.A554C p.K185T . . . OR12D2 26529 broad.mit.edu 36 6 29473127 29473127 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013936 exon1 c.C672A p.F224L . . . ZFP57 346171 broad.mit.edu 36 6 29751188 29751188 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109809 exon3 c.A306C p.E102D . . . HLA-G 3135 broad.mit.edu 36 6 29904453 29904453 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002127 exon4 c.C498T p.I166I . . . C6orf136 221545 broad.mit.edu 36 6 30726777 30726777 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161376 exon3 c.G1045A p.D349N . . . TUBB2A 7280 broad.mit.edu 36 6 3099139 3099139 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001069 exon4 c.A1295G p.E432G . . . MSH5 4439 broad.mit.edu 36 6 31836461 31836461 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025259 exon20 c.T1879G p.F627V . . . RDBP 7936 broad.mit.edu 36 6 32030827 32030827 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002904 exon6 c.C392A p.S131Y . . . TNXB 7148 broad.mit.edu 36 6 32154977 32154977 + Missense_Mutation SNP G C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon11 c.C4186G p.Q1396E . . . TNXB 7148 broad.mit.edu 36 6 32173834 32173834 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon2 c.T120C p.P40P . . . HLA-DQA2 3118 broad.mit.edu 36 6 32820984 32820984 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020056 exon2 c.A153C p.E51D . . . PSMB8 5696 broad.mit.edu 36 6 32916719 32916719 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004159 exon6 c.C814A p.Q272K . . . HLA-DMB 3109 broad.mit.edu 36 6 33014557 33014557 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002118 exon2 c.G219A p.A73A . . . HLA-DPB1 3115 broad.mit.edu 36 6 33156458 33156458 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002121 exon2 c.C132A p.C44X . . . COL11A2 1302 broad.mit.edu 36 6 33251382 33251382 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080681 exon28 c.G2065A p.G689R . . . RXRB 6257 broad.mit.edu 36 6 33273631 33273631 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021976 exon4 c.G706T p.D236Y . . . RPS18 6222 broad.mit.edu 36 6 33352195 33352195 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022551 exon6 c.A433G p.T145A . . . TAPBP 6892 broad.mit.edu 36 6 33380183 33380183 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172208 exon5 c.T1079C p.V360A . . . KIFC1 3833 broad.mit.edu 36 6 33482400 33482400 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002263 exon9 c.T1881C p.S627S . . . PPARD 5467 broad.mit.edu 36 6 35501716 35501716 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171818 exon9 c.T1208C p.M403T . . . PI16 221476 broad.mit.edu 36 6 37037286 37037286 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153370 exon3 c.G475A p.E159K . . . DNAH8 1769 broad.mit.edu 36 6 38918646 38918646 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon33 c.G4183T p.D1395Y . . . DNAH8 1769 broad.mit.edu 36 6 38997222 38997222 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon69 c.G9973T p.V3325L . . . DNAH8 1769 broad.mit.edu 36 6 39027225 39027225 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon80 c.A11751G p.G3917G . . . GLP1R 2740 broad.mit.edu 36 6 39161675 39161675 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002062 exon13 c.C1240T p.R414W . . . KCNK16 83795 broad.mit.edu 36 6 39392115 39392115 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135106 exon5 c.C743T p.A248V . . . XPO5 57510 broad.mit.edu 36 6 43624041 43624041 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020750 exon18 c.G1995A p.Q665Q . . . CAPN11 11131 broad.mit.edu 36 6 44256320 44256320 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007058 exon16 c.C1689A p.V563V . . . CYP39A1 51302 broad.mit.edu 36 6 46728128 46728128 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016593 exon1 c.G151T p.E51X . . . TDRD6 221400 broad.mit.edu 36 6 46764926 46764926 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010870 exon1 c.C1102T p.R368X . . . GPR110 266977 broad.mit.edu 36 6 47096465 47096465 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153840 exon7 c.G572T p.R191I . . . PGK2 5232 broad.mit.edu 36 6 49861672 49861672 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138733 exon1 c.C1188T p.G396G . . . PGK2 5232 broad.mit.edu 36 6 49862814 49862814 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138733 exon1 c.G46T p.G16W . . . TFAP2D 83741 broad.mit.edu 36 6 50794764 50794764 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172238 exon3 c.C540T p.G180G . . . GSTA5 221357 broad.mit.edu 36 6 52806934 52806934 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153699 exon5 c.G378T p.E126D . . . COL21A1 81578 broad.mit.edu 36 6 56031938 56031938 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030820 exon29 c.T2670C p.G890G . . . DST 667 broad.mit.edu 36 6 56528113 56528113 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon41 c.A7256G p.E2419G . . . FAM135A 57579 broad.mit.edu 36 6 71241930 71241930 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162529 exon4 c.A254G p.D85G . . . EEF1A1 1915 broad.mit.edu 36 6 74284605 74284605 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001402 exon7 c.A1133C p.K378T . . . COL12A1 1303 broad.mit.edu 36 6 75882341 75882341 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon49 c.G7576A p.A2526T . . . LCA5 167691 broad.mit.edu 36 6 80253737 80253737 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181714 exon9 c.G1797T p.E599D . . . LCA5 167691 broad.mit.edu 36 6 80260178 80260178 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181714 exon5 c.G729A p.S243S . . . LCA5 167691 broad.mit.edu 36 6 80279699 80279699 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181714 exon4 c.G669T p.K223N . . . ELOVL4 6785 broad.mit.edu 36 6 80685891 80685891 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022726 exon5 c.C634A p.L212I . . . IBTK 25998 broad.mit.edu 36 6 82977941 82977941 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015525 exon14 c.C2359A p.L787I . . . CYB5R4 51167 broad.mit.edu 36 6 84701097 84701097 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016230 exon11 c.C879A p.F293L . . . SYNCRIP 10492 broad.mit.edu 36 6 86381371 86381371 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159675 exon10 c.G1589A p.R530H . . . ZNF292 23036 broad.mit.edu 36 6 88022873 88022873 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015021 exon8 c.C2807T p.A936V . . . C6orf165 154313 broad.mit.edu 36 6 88180334 88180334 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031743 exon4 c.C280T p.R94X . . . C6orf165 154313 broad.mit.edu 36 6 88182157 88182157 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031743 exon5 c.G318T p.E106D . . . RARS2 57038 broad.mit.edu 36 6 88297358 88297358 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020320 exon9 c.G634A p.E212K . . . AKIRIN2 55122 broad.mit.edu 36 6 88448164 88448164 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018064 exon2 c.G272A p.R91Q . . . RNGTT 8732 broad.mit.edu 36 6 89707599 89707599 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003800 exon2 c.G84A p.K28K . . . PNRC1 10957 broad.mit.edu 36 6 89850436 89850436 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006813 exon2 c.G786A p.S262S . . . RRAGD 58528 broad.mit.edu 36 6 90145665 90145665 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021244 exon4 c.C756A p.I252I . . . CASP8AP2 9994 broad.mit.edu 36 6 90633438 90633438 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon8 c.T3708A p.N1236K . . . EPHA7 2045 broad.mit.edu 36 6 94177163 94177163 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004440 exon3 c.G609T p.K203N . . . KIAA0776 23376 broad.mit.edu 36 6 97079928 97079928 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015323 exon4 c.G287T p.R96I . . . USP45 85015 broad.mit.edu 36 6 99998167 99998167 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080481 exon15 c.C2068A p.H690N . . . OSTCL 202459 broad.mit.edu 36 6 159182825 159182825 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SRRT 51593 broad.mit.edu 36 7 100322627 100322627 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128852 exon15 c.C1842T p.Y614Y . . . LRRC17 10234 broad.mit.edu 36 7 102371976 102371976 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031692 exon4 c.G1012T p.D338Y . . . DNAJC2 27000 broad.mit.edu 36 7 102744554 102744554 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129887 exon11 c.A1227G p.L409L . . . DNAJC2 27000 broad.mit.edu 36 7 102754260 102754260 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129887 exon5 c.G538A p.E180K . . . RELN 5649 broad.mit.edu 36 7 102947085 102947085 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon49 c.C7783A p.L2595I . . . NAMPT 10135 broad.mit.edu 36 7 105696190 105696190 + Silent SNP C T T rs61740998 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005746 exon6 c.G699A p.T233T . . . PRKAR2B 5577 broad.mit.edu 36 7 106497989 106497989 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002736 exon2 c.G335A p.R112H . . . SLC26A4 5172 broad.mit.edu 36 7 107102776 107102776 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000441 exon6 c.C751A p.L251I . . . DOCK4 9732 broad.mit.edu 36 7 111327726 111327726 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014705 exon15 c.C1420T p.P474S . . . TMEM168 64418 broad.mit.edu 36 7 112211522 112211522 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022484 exon2 c.T595G p.F199V . . . PPP1R3A 5506 broad.mit.edu 36 7 113306976 113306976 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002711 exon4 c.A1407C p.K469N . . . PPP1R3A 5506 broad.mit.edu 36 7 113309391 113309391 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002711 exon3 c.G905A p.R302Q . . . MDFIC 29969 broad.mit.edu 36 7 114406916 114406916 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199072 exon4 c.G664A p.A222T . . . MET 4233 broad.mit.edu 36 7 116127012 116127012 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000245 exon2 c.C638T p.S213L . . . CTTNBP2 83992 broad.mit.edu 36 7 117146924 117146924 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033427 exon21 c.C4514A p.S1505Y . . . C7orf58 79974 broad.mit.edu 36 7 120554443 120554443 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024913 exon10 c.G1198T p.E400X . . . HYAL4 23553 broad.mit.edu 36 7 123295760 123295760 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012269 exon3 c.G197T p.R66I . . . SPAM1 6677 broad.mit.edu 36 7 123380970 123380970 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174044 exon3 c.A110C p.N37T . . . GCC1 79571 broad.mit.edu 36 7 127011767 127011767 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024523 exon1 c.C706T p.R236W . . . GCC1 79571 broad.mit.edu 36 7 127012003 127012003 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024523 exon1 c.G470T p.R157I . . . PLXNA4 91584 broad.mit.edu 36 7 131538666 131538666 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon11 c.T2351C p.V784A . . . PLXNA4 91584 broad.mit.edu 36 7 131843267 131843267 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181775 exon3 c.C726A p.I242I . . . CALD1 800 broad.mit.edu 36 7 134295397 134295397 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033157 exon12 c.A1504C p.N502H . . . DGKI 9162 broad.mit.edu 36 7 136730925 136730925 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004717 exon33 c.C3040A p.L1014M . . . WEE2 494551 broad.mit.edu 36 7 141065342 141065342 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105558 exon4 c.G587T p.R196I . . . OR9A4 130075 broad.mit.edu 36 7 141265237 141265237 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001656 exon1 c.C93A p.F31L . . . OR9A4 130075 broad.mit.edu 36 7 141265701 141265701 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001656 exon1 c.A557C p.K186T . . . TAS2R39 259285 broad.mit.edu 36 7 142591059 142591059 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176881 exon1 c.C426A p.F142L . . . OR6B1 135946 broad.mit.edu 36 7 143332450 143332450 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005281 exon1 c.G428A p.R143H . . . OR2A5 393046 broad.mit.edu 36 7 143378489 143378489 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012365 exon1 c.G62T p.R21M . . . OR2A14 135941 broad.mit.edu 36 7 143457948 143457948 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001659 exon1 c.G810T p.Q270H . . . OR2A7 401427 broad.mit.edu 36 7 143586845 143586845 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005328 exon1 c.G810T p.K270N . . . C7orf33 202865 broad.mit.edu 36 7 147942113 147942113 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145304 exon2 c.C251A p.A84D . . . GIMAP4 55303 broad.mit.edu 36 7 149900329 149900329 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018326 exon3 c.G238T p.E80X . . . KCNH2 3757 broad.mit.edu 36 7 150278953 150278953 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172057 exon4 c.G1114A p.D372N . . . SMARCD3 6604 broad.mit.edu 36 7 150570575 150570575 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003078 exon6 c.G465A p.A155A . . . GALNTL5 168391 broad.mit.edu 36 7 151347669 151347669 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145292 exon9 c.G1182T p.Q394H . . . TMEM195 392636 broad.mit.edu 36 7 15371713 15371713 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004320 exon12 c.G1214A p.R405Q . . . CNPY1 285888 broad.mit.edu 36 7 154994450 154994450 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103176 exon2 c.G44T p.R15I . . . MACC1 346389 broad.mit.edu 36 7 20167994 20167994 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182762 exon4 c.G17T p.R6I . . . SP4 6671 broad.mit.edu 36 7 21436454 21436454 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003112 exon3 c.A1146G p.G382G . . . DNAH11 8701 broad.mit.edu 36 7 21785110 21785110 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon57 c.C9368A p.S3123Y . . . DNAH11 8701 broad.mit.edu 36 7 21901043 21901043 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon79 c.C12972T p.I4324I . . . STK31 56164 broad.mit.edu 36 7 23838323 23838323 + Missense_Mutation SNP G C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122833 exon24 c.G2804C p.R935T . . . MPP6 51678 broad.mit.edu 36 7 24656677 24656677 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016447 exon6 c.C472T p.L158F . . . GGCT 79017 broad.mit.edu 36 7 30506819 30506819 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199816 exon2 c.T145G p.F49V . . . INMT 11185 broad.mit.edu 36 7 30761564 30761564 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006774 exon3 c.G364A p.G122S . . . CCDC129 223075 broad.mit.edu 36 7 31648878 31648878 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194300 exon11 c.G1369T p.D457Y . . . CCDC129 223075 broad.mit.edu 36 7 31649850 31649850 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194300 exon11 c.A2341G p.K781E . . . HERPUD2 64224 broad.mit.edu 36 7 35644556 35644556 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022373 exon6 c.G546T p.V182V . . . TXNDC3 51314 broad.mit.edu 36 7 37883116 37883116 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016616 exon12 c.C976A p.L326I . . . SFRP4 6424 broad.mit.edu 36 7 37918342 37918342 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003014 exon4 c.G695A p.R232Q . . . CDK13 8621 broad.mit.edu 36 7 40100505 40100505 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003718 exon14 c.G3940T p.D1314Y . . . C7orf11 136647 broad.mit.edu 36 7 40139331 40139331 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138701 exon2 c.G392T p.R131I . . . INHBA 3624 broad.mit.edu 36 7 41696637 41696637 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002192 exon3 c.G417T p.E139D . . . GLI3 2737 broad.mit.edu 36 7 41970867 41970867 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon15 c.C4329A p.F1443L . . . GLI3 2737 broad.mit.edu 36 7 41973918 41973918 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon14 c.C2232T p.I744I . . . HECW1 23072 broad.mit.edu 36 7 43499234 43499234 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015052 exon19 c.C3367A p.L1123I . . . PKD1L1 168507 broad.mit.edu 36 7 47802261 47802261 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138295 exon55 c.C8206T p.L2736F . . . SUN3 256979 broad.mit.edu 36 7 48035048 48035048 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152782 exon2 c.A13G p.T5A . . . ABCA13 154664 broad.mit.edu 36 7 48285690 48285690 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon15 c.A5718C p.K1906N . . . FIGNL1 63979 broad.mit.edu 36 7 50480619 50480619 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042762 exon4 c.C1861T p.R621C . . . CCT6A 908 broad.mit.edu 36 7 56098244 56098244 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009186 exon13 c.G1433A p.R478Q . . . ZNF479 90827 broad.mit.edu 36 7 57192536 57192536 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033273 exon5 c.A528C p.K176N . . . ZNF107 51427 broad.mit.edu 36 7 63804443 63804443 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013746 exon5 c.G326T p.C109F . . . ZNF92 168374 broad.mit.edu 36 7 64501628 64501628 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152626 exon4 c.G1166T p.R389I . . . RABGEF1 27342 broad.mit.edu 36 7 65911413 65911413 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014504 exon9 c.G1183T p.E395X . . . AUTS2 26053 broad.mit.edu 36 7 69869056 69869056 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015570 exon9 c.G1489A p.E497K . . . BCL7B 9275 broad.mit.edu 36 7 72595894 72595894 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001707 exon3 c.C185T p.S62L . . . CCDC146 57639 broad.mit.edu 36 7 76729441 76729441 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020879 exon9 c.C1054T p.R352C . . . PTPN12 5782 broad.mit.edu 36 7 77038397 77038397 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002835 exon2 c.G166T p.E56X . . . MAGI2 9863 broad.mit.edu 36 7 77836417 77836417 + Nonsense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012301 exon7 c.T1095G p.Y365X . . . ICA1 3382 broad.mit.edu 36 7 8134221 8134221 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004968 exon13 c.C1137A p.I379I . . . CACNA2D1 781 broad.mit.edu 36 7 81431601 81431601 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000722 exon33 c.T2585G p.F862C . . . CACNA2D1 781 broad.mit.edu 36 7 81474995 81474995 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000722 exon16 c.T1376G p.V459G . . . PCLO 27445 broad.mit.edu 36 7 82272959 82272959 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon21 c.C14914A p.L4972I . . . PCLO 27445 broad.mit.edu 36 7 82419368 82419368 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.A8837C p.K2946T . . . PCLO 27445 broad.mit.edu 36 7 82423426 82423426 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.G4779A p.K1593K . . . SEMA3D 223117 broad.mit.edu 36 7 84466742 84466742 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon17 c.C2284T p.R762X . . . SEMA3D 223117 broad.mit.edu 36 7 84565070 84565070 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon2 c.A299C p.K100T . . . ABCB4 5244 broad.mit.edu 36 7 86879261 86879261 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018849 exon23 c.C2808A p.I936I . . . ABCB4 5244 broad.mit.edu 36 7 86911021 86911021 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018849 exon11 c.C1124A p.P375H . . . ABCB1 5243 broad.mit.edu 36 7 87017138 87017138 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000927 exon14 c.G1519A p.A507T . . . RUNDC3B 154661 broad.mit.edu 36 7 87283497 87283497 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134405 exon10 c.A1209C p.L403F . . . NXPH1 30010 broad.mit.edu 36 7 8757555 8757555 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152745 exon3 c.T447C p.F149F . . . ZNF804B 219578 broad.mit.edu 36 7 88685503 88685503 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181646 exon2 c.G207A p.E69E . . . AKAP9 10142 broad.mit.edu 36 7 91441166 91441166 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon2 c.G254T p.R85I . . . AKAP9 10142 broad.mit.edu 36 7 91564881 91564881 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon42 c.C10420A p.L3474I . . . SAMD9 54809 broad.mit.edu 36 7 92568762 92568762 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193307 exon2 c.C4585T p.R1529C . . . SAMD9 54809 broad.mit.edu 36 7 92571208 92571208 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193307 exon2 c.A2139G p.R713R . . . SAMD9L 219285 broad.mit.edu 36 7 92599563 92599563 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152703 exon5 c.G3658T p.E1220X . . . CALCR 799 broad.mit.edu 36 7 92928084 92928084 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001742 exon8 c.C633T p.L211L . . . TFPI2 7980 broad.mit.edu 36 7 93356368 93356368 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006528 exon3 c.C375A p.F125L . . . TRRAP 8295 broad.mit.edu 36 7 98333421 98333421 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon8 c.G629A p.R210Q . . . GJC3 349149 broad.mit.edu 36 7 99364444 99364444 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181538 exon1 c.G736A p.D246N . . . COPS6 10980 broad.mit.edu 36 7 99526826 99526826 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006833 exon8 c.G679A p.A227T . . . SNX31 169166 broad.mit.edu 36 8 101678153 101678153 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152628 exon10 c.C868A p.L290I . . . ODF1 4956 broad.mit.edu 36 8 103633438 103633438 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024410 exon1 c.C307T p.R103X . . . PRSS55 203074 broad.mit.edu 36 8 10424442 10424442 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197020 exon2 c.C170A p.S57Y . . . TRHR 7201 broad.mit.edu 36 8 110169693 110169693 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003301 exon1 c.C776T p.S259F . . . CSMD3 114788 broad.mit.edu 36 8 113718359 113718359 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon22 c.G3578A p.R1193Q . . . DEFB136 613210 broad.mit.edu 36 8 11868969 11868969 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033018 exon2 c.C123A p.F41L . . . TAF2 6873 broad.mit.edu 36 8 120883394 120883394 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003184 exon6 c.G613T p.E205X . . . COL14A1 7373 broad.mit.edu 36 8 121285166 121285166 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021110 exon9 c.C915A p.I305I . . . COL14A1 7373 broad.mit.edu 36 8 121414141 121414141 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021110 exon42 c.G4771A p.A1591T . . . MRPL13 28998 broad.mit.edu 36 8 121506764 121506764 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014078 exon4 c.T269G p.V90G . . . ANXA13 312 broad.mit.edu 36 8 124762759 124762759 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004306 exon11 c.G853T p.A285S . . . FER1L6 654463 broad.mit.edu 36 8 125103046 125103046 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039112 exon17 c.G2089A p.E697K . . . FER1L6 654463 broad.mit.edu 36 8 125182672 125182672 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039112 exon38 c.C5037A p.F1679L . . . TATDN1 83940 broad.mit.edu 36 8 125576914 125576914 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146160 exon8 c.A503C p.E168A . . . TATDN1 83940 broad.mit.edu 36 8 125590048 125590048 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146160 exon5 c.G311A p.R104Q . . . DLC1 10395 broad.mit.edu 36 8 13001862 13001862 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182643 exon9 c.A2355C p.S785S . . . ASAP1 50807 broad.mit.edu 36 8 131142268 131142268 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018482 exon27 c.C2931A p.L977L . . . LRRC6 23639 broad.mit.edu 36 8 133742927 133742927 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012472 exon2 c.A139C p.K47Q . . . DLC1 10395 broad.mit.edu 36 8 13401055 13401055 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.T897C p.F299F . . . DLC1 10395 broad.mit.edu 36 8 13401687 13401687 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.G265T p.D89Y . . . FAM135B 51059 broad.mit.edu 36 8 139232769 139232769 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon13 c.T3131G p.F1044C . . . SGCZ 137868 broad.mit.edu 36 8 14139559 14139559 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139167 exon4 c.G337A p.D113N . . . FLJ43860 389690 broad.mit.edu 36 8 142550422 142550422 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207414 exon16 c.C1921T p.L641L . . . CYP11B1 1584 broad.mit.edu 36 8 143955610 143955610 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001026213 exon3 c.G426T p.L142F . . . C8orf31 286122 broad.mit.edu 36 8 144196014 144196014 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173687 exon3 c.C146A p.S49Y . . . SGCZ 137868 broad.mit.edu 36 8 14456723 14456723 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139167 exon2 c.T123G p.I41M . . . ZNF7 7553 broad.mit.edu 36 8 146038273 146038273 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003416 exon5 c.G977T p.R326I . . . ZNF7 7553 broad.mit.edu 36 8 146038872 146038872 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003416 exon5 c.G1576A p.E526K . . . TUSC3 7991 broad.mit.edu 36 8 15552607 15552607 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178234 exon3 c.G339A p.A113A . . . MTUS1 57509 broad.mit.edu 36 8 17555008 17555008 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001925 exon11 c.A3189G p.E1063E . . . FGL1 2267 broad.mit.edu 36 8 17770725 17770725 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004467 exon6 c.T571G p.F191V . . . PCM1 5108 broad.mit.edu 36 8 17874265 17874265 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon23 c.A3732C p.L1244F . . . PIWIL2 55124 broad.mit.edu 36 8 22228543 22228543 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018068 exon18 c.G2148T p.K716N . . . ADAM28 10863 broad.mit.edu 36 8 24243451 24243451 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021777 exon11 c.C981T p.S327S . . . NEFL 4747 broad.mit.edu 36 8 24866353 24866353 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006158 exon4 c.G1520T p.R507I . . . EBF2 64641 broad.mit.edu 36 8 25774770 25774770 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022659 exon12 c.C1136T p.A379V . . . CSMD1 64478 broad.mit.edu 36 8 3034857 3034857 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033225 exon34 c.G5383A p.D1795N . . . TEX15 56154 broad.mit.edu 36 8 30820817 30820817 + Nonsense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.T5259G p.Y1753X . . . TEX15 56154 broad.mit.edu 36 8 30823707 30823707 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.A2369G p.D790G . . . PURG 29942 broad.mit.edu 36 8 31009044 31009044 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015508 exon1 c.C797A p.S266Y . . . CSMD1 64478 broad.mit.edu 36 8 3253017 3253017 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon14 c.G1883T p.X628L . . . NRG1 3084 broad.mit.edu 36 8 32719749 32719749 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013957 exon7 c.T647G p.F216C . . . NRG1 3084 broad.mit.edu 36 8 32740307 32740307 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159996 exon8 c.A836G p.N279S . . . FUT10 84750 broad.mit.edu 36 8 33430436 33430436 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032664 exon3 c.G216A p.R72R . . . KCNU1 157855 broad.mit.edu 36 8 36781937 36781937 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon4 c.C444A p.F148L . . . IDO1 3620 broad.mit.edu 36 8 39895535 39895535 + Missense_Mutation SNP G T T rs12545878 byCluster;byHapMap TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002164 exon4 c.G348T p.K116N . . . ZMAT4 79698 broad.mit.edu 36 8 40674001 40674001 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024645 exon4 c.C269T p.A90V . . . ANK1 286 broad.mit.edu 36 8 41666968 41666968 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon33 c.G4038A p.A1346A . . . AP3M2 10947 broad.mit.edu 36 8 42134764 42134764 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134296 exon4 c.G422A p.R141Q . . . CHRNB3 1142 broad.mit.edu 36 8 42706093 42706093 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000749 exon5 c.C486T p.F162F . . . CHRNA6 8973 broad.mit.edu 36 8 42730609 42730609 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004198 exon5 c.C890A p.S297Y . . . C8orf42 157695 broad.mit.edu 36 8 434561 434561 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175075 exon2 c.A145G p.T49A . . . SNAI2 6591 broad.mit.edu 36 8 49995211 49995211 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003068 exon2 c.C422T p.S141F . . . AGPAT5 55326 broad.mit.edu 36 8 6602107 6602107 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018361 exon8 c.T885G p.F295L . . . MTFR1 9650 broad.mit.edu 36 8 66782032 66782032 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145838 exon4 c.C652T p.R218W . . . DNAJC5B 85479 broad.mit.edu 36 8 67126388 67126388 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033105 exon3 c.G52T p.E18X . . . TRIM55 84675 broad.mit.edu 36 8 67225222 67225222 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_184085 exon7 c.G952T p.E318X . . . ARFGEF1 10565 broad.mit.edu 36 8 68340820 68340820 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006421 exon14 c.G2098T p.E700X . . . CPA6 57094 broad.mit.edu 36 8 68497415 68497415 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020361 exon11 c.G1192A p.E398K . . . NCOA2 10499 broad.mit.edu 36 8 71219452 71219452 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon13 c.A2791C p.N931H . . . SPAG11B 10407 broad.mit.edu 36 8 7307741 7307741 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058200 exon2 c.G112T p.E38X . . . ZFHX4 79776 broad.mit.edu 36 8 77779271 77779271 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon2 c.C393T p.I131I . . . ZFHX4 79776 broad.mit.edu 36 8 77930567 77930567 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.G8855A p.R2952Q . . . SLC7A13 157724 broad.mit.edu 36 8 87311290 87311290 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138817 exon1 c.A333C p.Q111H . . . DCAF4L2 138009 broad.mit.edu 36 8 88954930 88954930 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152418 exon1 c.C386A p.S129Y . . . PPP1R3B 79660 broad.mit.edu 36 8 9036023 9036023 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024607 exon2 c.T549G p.T183T . . . TMEM64 169200 broad.mit.edu 36 8 91707226 91707226 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146273 exon2 c.G836A p.R279Q . . . TMEM55A 55529 broad.mit.edu 36 8 92078122 92078122 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018710 exon6 c.G566A p.R189Q . . . RUNX1T1 862 broad.mit.edu 36 8 93067552 93067552 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198626 exon10 c.G1255A p.V419I . . . RBM12B 389677 broad.mit.edu 36 8 94817664 94817664 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203390 exon3 c.G151T p.E51X . . . PTDSS1 9791 broad.mit.edu 36 8 97401696 97401696 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014754 exon10 c.G1120A p.D374N . . . PGCP 10404 broad.mit.edu 36 8 97866393 97866393 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016134 exon2 c.G92T p.R31M . . . PGCP 10404 broad.mit.edu 36 8 97866704 97866704 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016134 exon2 c.C403A p.L135I . . . MATN2 4147 broad.mit.edu 36 8 99088986 99088986 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030583 exon10 c.C1554T p.S518S . . . C8orf47 203111 broad.mit.edu 36 8 99170730 99170730 + Missense_Mutation SNP G T T rs35339824 unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173549 exon2 c.G309T p.K103N . . . POP1 10940 broad.mit.edu 36 8 99222236 99222236 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145860 exon11 c.G1538A p.R513Q . . . POP1 10940 broad.mit.edu 36 8 99237798 99237798 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145860 exon15 c.G2402A p.S801N . . . KCNS2 3788 broad.mit.edu 36 8 99509611 99509611 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020697 exon2 c.G228T p.E76D . . . RNF170 81790 broad.mit.edu 36 8 42862172 42862172 + Splice_Site SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . COL15A1 1306 broad.mit.edu 36 9 100871956 100871956 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001855 exon42 c.C4134T p.I1378I . . . TGFBR1 7046 broad.mit.edu 36 9 100949850 100949850 + Nonsense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004612 exon8 c.T1349G p.L450X . . . TMEFF1 8577 broad.mit.edu 36 9 102300956 102300956 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003692 exon2 c.G285T p.L95F . . . SMC2 10592 broad.mit.edu 36 9 105904101 105904101 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006444 exon8 c.G676T p.E226X . . . OR13F1 138805 broad.mit.edu 36 9 106307064 106307064 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004485 exon1 c.C700T p.R234X . . . LPAR1 1902 broad.mit.edu 36 9 112743944 112743944 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001401 exon3 c.G371A p.R124H . . . OR2K2 26248 broad.mit.edu 36 9 113129589 113129589 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205859 exon1 c.C946A p.L316I . . . DNAJC25 548645 broad.mit.edu 36 9 113449325 113449325 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015882 exon2 c.A454C p.I152L . . . C9orf80 58493 broad.mit.edu 36 9 114491647 114491647 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021218 exon4 c.A200G p.Q67R . . . ZNF883 169834 broad.mit.edu 36 9 114799794 114799794 + Silent SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101338 exon5 c.T567G p.V189V . . . RGS3 5998 broad.mit.edu 36 9 115263948 115263948 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144488 exon3 c.G221A p.R74Q . . . TNC 3371 broad.mit.edu 36 9 116859427 116859427 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon15 c.A4405G p.T1469A . . . TNC 3371 broad.mit.edu 36 9 116880290 116880290 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon7 c.C2427A p.I809I . . . DBC1 1620 broad.mit.edu 36 9 121051146 121051146 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014618 exon3 c.C322T p.L108F . . . FBXW2 26190 broad.mit.edu 36 9 122589968 122589968 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012164 exon3 c.G390T p.M130I . . . OR1J2 26740 broad.mit.edu 36 9 124313701 124313701 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054107 exon1 c.C800A p.S267Y . . . OR1L8 138881 broad.mit.edu 36 9 124370309 124370309 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004454 exon1 c.A269C p.K90T . . . OR5C1 392391 broad.mit.edu 36 9 124591566 124591566 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001923 exon1 c.C534A p.I178I . . . OR1K1 392392 broad.mit.edu 36 9 124602718 124602718 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080859 exon1 c.C496T p.R166C . . . GAPVD1 26130 broad.mit.edu 36 9 127139463 127139463 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015635 exon16 c.A2730G p.E910E . . . C9orf117 286207 broad.mit.edu 36 9 129514816 129514816 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012502 exon7 c.G1145A p.R382H . . . DNM1 1759 broad.mit.edu 36 9 130024659 130024659 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon8 c.G1091A p.R364Q . . . GOLGA2 2801 broad.mit.edu 36 9 130076046 130076046 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004486 exon2 c.C111T p.S37S . . . ODF2 4957 broad.mit.edu 36 9 130302177 130302177 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153435 exon21 c.G2504A p.R835H . . . PKN3 29941 broad.mit.edu 36 9 130522586 130522586 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013355 exon22 c.C2550T p.G850G . . . NUP188 23511 broad.mit.edu 36 9 130807811 130807811 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015354 exon41 c.G4804A p.E1602K . . . MPDZ 8777 broad.mit.edu 36 9 13115380 13115380 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003829 exon34 c.C4642A p.L1548I . . . MPDZ 8777 broad.mit.edu 36 9 13237771 13237771 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003829 exon2 c.C46T p.R16C . . . SETX 23064 broad.mit.edu 36 9 134211525 134211525 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015046 exon4 c.G332A p.R111Q . . . TTF1 7270 broad.mit.edu 36 9 134241254 134241254 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007344 exon11 c.C2587T p.R863X . . . C9orf96 169436 broad.mit.edu 36 9 135249247 135249247 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153710 exon8 c.C592T p.R198C . . . OLFM1 10439 broad.mit.edu 36 9 137151291 137151291 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014279 exon6 c.G850A p.G284R . . . GLT6D1 360203 broad.mit.edu 36 9 137655854 137655854 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182974 exon5 c.G741T p.L247L . . . SNAPC4 6621 broad.mit.edu 36 9 138402858 138402858 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003086 exon10 c.C982T p.R328C . . . CACNA1B 774 broad.mit.edu 36 9 140110840 140110840 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000718 exon36 c.G5178T p.L1726F . . . FREM1 158326 broad.mit.edu 36 9 14832347 14832347 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon10 c.G1705A p.E569K . . . FREM1 158326 broad.mit.edu 36 9 14847648 14847648 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon6 c.G731A p.G244D . . . HAUS6 54801 broad.mit.edu 36 9 19048679 19048679 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017645 exon16 c.G2086T p.D696Y . . . KIAA1797 54914 broad.mit.edu 36 9 20730295 20730295 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017794 exon7 c.A348C p.E116D . . . IFNA10 3446 broad.mit.edu 36 9 21196947 21196947 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002171 exon1 c.C150A p.F50L . . . KLHL9 55958 broad.mit.edu 36 9 21323625 21323625 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018847 exon1 c.G1234T p.E412X . . . PLAA 9373 broad.mit.edu 36 9 26925019 26925019 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031689 exon2 c.A335C p.K112T . . . TEK 7010 broad.mit.edu 36 9 27196730 27196730 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000459 exon15 c.C2515A p.L839I . . . LINGO2 158038 broad.mit.edu 36 9 27940531 27940531 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152570 exon7 c.C139T p.R47X . . . TOPORS 10210 broad.mit.edu 36 9 32532526 32532526 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.G1802A p.S601N . . . TAF1L 138474 broad.mit.edu 36 9 32621919 32621919 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.A3659C p.K1220T . . . ARID3C 138715 broad.mit.edu 36 9 34617855 34617855 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017363 exon1 c.G157T p.E53X . . . KIAA1045 23349 broad.mit.edu 36 9 34961297 34961297 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015297 exon2 c.T2A p.M1K . . . C9orf131 138724 broad.mit.edu 36 9 35035410 35035410 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040411 exon2 c.C2565A p.V855V . . . RUSC2 9853 broad.mit.edu 36 9 35545271 35545271 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014806 exon3 c.C2229T p.V743V . . . CD72 971 broad.mit.edu 36 9 35600743 35600743 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001782 exon8 c.G958A p.A320T . . . TLN1 7094 broad.mit.edu 36 9 35689390 35689390 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006289 exon51 c.C6837T p.S2279S . . . RECK 8434 broad.mit.edu 36 9 36111662 36111662 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021111 exon20 c.G2671A p.D891N . . . FRMPD1 22844 broad.mit.edu 36 9 37697475 37697475 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014907 exon3 c.G164A p.R55Q . . . FRMPD1 22844 broad.mit.edu 36 9 37723737 37723737 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014907 exon12 c.C1133A p.S378Y . . . DCAF10 79269 broad.mit.edu 36 9 37850057 37850057 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024345 exon6 c.G1178A p.R393Q . . . ZNF658 26149 broad.mit.edu 36 9 40764221 40764221 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033160 exon5 c.T1054G p.F352V . . . C9orf68 55064 broad.mit.edu 36 9 4607927 4607927 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039395 exon8 c.G817T p.E273X . . . C9orf68 55064 broad.mit.edu 36 9 4608898 4608898 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039395 exon7 c.C599T p.A200V . . . INSL6 11172 broad.mit.edu 36 9 5175387 5175387 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007179 exon1 c.C216T p.V72V . . . IL33 90865 broad.mit.edu 36 9 6246123 6246123 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199640 exon7 c.G642T p.E214D . . . TPD52L3 89882 broad.mit.edu 36 9 6320998 6320998 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001874 exon2 c.G390A p.T130T . . . PGM5 5239 broad.mit.edu 36 9 70196294 70196294 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021965 exon5 c.T722G p.V241G . . . FAM189A2 9413 broad.mit.edu 36 9 71182418 71182418 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004816 exon6 c.G432A p.P144P . . . TRPM3 80036 broad.mit.edu 36 9 72357970 72357970 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007471 exon22 c.C3264T p.I1088I . . . TMEM2 23670 broad.mit.edu 36 9 73505460 73505460 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013390 exon19 c.G3295A p.E1099K . . . PRUNE2 158471 broad.mit.edu 36 9 78651357 78651357 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon4 c.C402T p.S134S . . . VPS13A 23230 broad.mit.edu 36 9 79078057 79078057 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018037 exon24 c.G2469T p.Q823H . . . FAM75D1 389763 broad.mit.edu 36 9 83799318 83799318 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001670 exon4 c.A4113C p.Q1371H . . . RASEF 158158 broad.mit.edu 36 9 84795127 84795127 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152573 exon16 c.C2116T p.R706X . . . KIF27 55582 broad.mit.edu 36 9 85696179 85696179 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017576 exon6 c.A1660C p.K554Q . . . KIF27 55582 broad.mit.edu 36 9 85708154 85708154 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017576 exon4 c.C1099T p.R367X . . . SLC28A3 64078 broad.mit.edu 36 9 86106999 86106999 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022127 exon6 c.C460T p.R154X . . . NTRK2 4915 broad.mit.edu 36 9 86528999 86528999 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018066 exon8 c.A761G p.N254S . . . DAPK1 1612 broad.mit.edu 36 9 89451272 89451272 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon13 c.C1208T p.S403L . . . NOL8 55035 broad.mit.edu 36 9 94109028 94109028 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017948 exon11 c.A2786C p.N929T . . . OGN 4969 broad.mit.edu 36 9 94188352 94188352 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014057 exon6 c.A678C p.E226D . . . C9orf102 375748 broad.mit.edu 36 9 97699984 97699984 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010895 exon3 c.A537C p.K179N . . . ZNF782 158431 broad.mit.edu 36 9 98620297 98620297 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001662 exon6 c.G1829T p.R610I . . . ZNF782 158431 broad.mit.edu 36 9 98621633 98621633 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001662 exon6 c.C493T p.R165C . . . FAM22G 441457 broad.mit.edu 36 9 98740053 98740053 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001045477 exon6 c.C1389A p.F463L . . . HEMGN 55363 broad.mit.edu 36 9 99732321 99732321 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197978 exon3 c.G1177T p.E393X . . . HEMGN 55363 broad.mit.edu 36 9 99732921 99732921 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197978 exon3 c.G577A p.D193N . . . XKRX 402415 broad.mit.edu 36 X 100056130 100056130 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212559 exon3 c.C1203A p.F401L . . . DRP2 1821 broad.mit.edu 36 X 100383979 100383979 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001939 exon8 c.G838T p.E280X . . . TAF7L 54457 broad.mit.edu 36 X 100420664 100420664 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168474 exon7 c.G478T p.E160X . . . WWC3 55841 broad.mit.edu 36 X 10045339 10045339 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015691 exon11 c.G1240A p.D414N . . . GPRASP1 9737 broad.mit.edu 36 X 101799421 101799421 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099411 exon3 c.C3924A p.F1308L . . . TMEM31 203562 broad.mit.edu 36 X 102855196 102855196 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182541 exon3 c.C121T p.R41X . . . PLP1 5354 broad.mit.edu 36 X 102927315 102927315 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199478 exon2 c.C153A p.F51L . . . ESX1 80712 broad.mit.edu 36 X 103385532 103385532 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153448 exon2 c.G465T p.E155D . . . NRK 203447 broad.mit.edu 36 X 105053838 105053838 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon18 c.G2683A p.A895T . . . NRK 203447 broad.mit.edu 36 X 105077109 105077109 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon26 c.G4350T p.K1450N . . . SERPINA7 6906 broad.mit.edu 36 X 105167103 105167103 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000354 exon2 c.G603T p.V201V . . . CLDN2 9075 broad.mit.edu 36 X 106058329 106058329 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020384 exon2 c.G215A p.G72D . . . GUCY2F 2986 broad.mit.edu 36 X 108560197 108560197 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001522 exon8 c.G1786A p.E596K . . . CHRDL1 91851 broad.mit.edu 36 X 109811493 109811493 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143981 exon10 c.C1029A p.F343L . . . CHRDL1 91851 broad.mit.edu 36 X 109889616 109889616 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143981 exon4 c.G230A p.R77Q . . . ARHGAP6 395 broad.mit.edu 36 X 11070299 11070299 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013423 exon12 c.C1623T p.S541S . . . ARHGAP6 395 broad.mit.edu 36 X 11072281 11072281 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013423 exon11 c.A1307C p.D436A . . . AGTR2 186 broad.mit.edu 36 X 115218025 115218025 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000686 exon3 c.G464T p.R155I . . . SLC6A14 11254 broad.mit.edu 36 X 115499591 115499591 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007231 exon10 c.C1359T p.G453G . . . KLHL13 90293 broad.mit.edu 36 X 116927408 116927408 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168300 exon5 c.G1232A p.R411Q . . . DOCK11 139818 broad.mit.edu 36 X 117661456 117661456 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144658 exon40 c.T4269G p.L1423L . . . KIAA1210 57481 broad.mit.edu 36 X 118123019 118123019 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020721 exon7 c.G1032T p.K344N . . . KIAA1210 57481 broad.mit.edu 36 X 118168449 118168449 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020721 exon1 c.C122T p.A41V . . . UPF3B 65109 broad.mit.edu 36 X 118855969 118855969 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080632 exon10 c.C1081T p.R361X . . . UPF3B 65109 broad.mit.edu 36 X 118856470 118856470 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080632 exon9 c.G895T p.E299X . . . FAM70A 55026 broad.mit.edu 36 X 119278773 119278773 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104545 exon7 c.C706T p.P236S . . . FAM70A 55026 broad.mit.edu 36 X 119322266 119322266 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104545 exon2 c.A167T p.N56I . . . LAMP2 3920 broad.mit.edu 36 X 119465813 119465813 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002294 exon5 c.C652A p.P218T . . . STAG2 10735 broad.mit.edu 36 X 122992611 122992611 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042750 exon5 c.C243T p.N81N . . . DCAF12L2 340578 broad.mit.edu 36 X 125126299 125126299 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013628 exon1 c.G1290A p.A430A . . . FRMPD4 9758 broad.mit.edu 36 X 12630048 12630048 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014728 exon10 c.C1068T p.I356I . . . TLR7 51284 broad.mit.edu 36 X 12814242 12814242 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016562 exon3 c.C694A p.L232I . . . SMARCA1 6594 broad.mit.edu 36 X 128477638 128477638 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003069 exon4 c.G443A p.R148H . . . OCRL 4952 broad.mit.edu 36 X 128537648 128537648 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001587 exon17 c.C1807T p.P603S . . . XPNPEP2 7512 broad.mit.edu 36 X 128713910 128713910 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003399 exon10 c.C925T p.R309C . . . ELF4 2000 broad.mit.edu 36 X 129028628 129028628 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001421 exon9 c.A1741G p.T581A . . . AIFM1 9131 broad.mit.edu 36 X 129101475 129101475 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145812 exon8 c.G822T p.K274N . . . ZNF280C 55609 broad.mit.edu 36 X 129166987 129166987 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017666 exon17 c.G2126A p.R709H . . . ZNF280C 55609 broad.mit.edu 36 X 129189365 129189365 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017666 exon11 c.A1220C p.K407T . . . ZNF280C 55609 broad.mit.edu 36 X 129208542 129208542 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017666 exon3 c.G150A p.E50E . . . ENOX2 10495 broad.mit.edu 36 X 129599007 129599007 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182314 exon12 c.C1275T p.L425L . . . ARHGAP36 158763 broad.mit.edu 36 X 130046009 130046009 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144967 exon5 c.C695T p.A232V . . . FRMD7 90167 broad.mit.edu 36 X 131040401 131040401 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194277 exon12 c.C1325A p.S442Y . . . MBNL3 55796 broad.mit.edu 36 X 131352783 131352783 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001170704 exon5 c.G256T p.E86X . . . USP26 83844 broad.mit.edu 36 X 131987344 131987344 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.C2571T p.Y857Y . . . USP26 83844 broad.mit.edu 36 X 131988154 131988154 + Silent SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.A1761C p.S587S . . . USP26 83844 broad.mit.edu 36 X 131989504 131989504 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.G411T p.E137D . . . GPC3 2719 broad.mit.edu 36 X 132558277 132558277 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164618 exon7 c.C1382A p.S461Y . . . CCDC160 347475 broad.mit.edu 36 X 133207473 133207473 + Nonstop_Mutation SNP A T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101357 exon2 c.A977T p.X326L . . . PLAC1 10761 broad.mit.edu 36 X 133528255 133528255 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021796 exon3 c.T124G p.F42V . . . FAM122B 159090 broad.mit.edu 36 X 133750935 133750935 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170756 exon4 c.G262T p.E88X . . . ZNF449 203523 broad.mit.edu 36 X 134308830 134308830 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152695 exon2 c.G121A p.A41T . . . SAGE1 55511 broad.mit.edu 36 X 134821553 134821553 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018666 exon18 c.G2296A p.D766N . . . MAP7D3 79649 broad.mit.edu 36 X 135135828 135135828 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173517 exon12 c.C1940T p.A647V . . . GPR112 139378 broad.mit.edu 36 X 135256173 135256173 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153834 exon6 c.C2642A p.S881Y . . . GPR112 139378 broad.mit.edu 36 X 135257472 135257472 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153834 exon6 c.C3941T p.S1314L . . . HTATSF1 27336 broad.mit.edu 36 X 135412655 135412655 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014500 exon5 c.G623A p.G208D . . . GPR101 83550 broad.mit.edu 36 X 135941391 135941391 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054021 exon1 c.G109A p.V37M . . . OFD1 8481 broad.mit.edu 36 X 13674421 13674421 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003611 exon7 c.G580A p.E194K . . . OFD1 8481 broad.mit.edu 36 X 13674822 13674822 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003611 exon8 c.G657T p.L219F . . . MCF2 4168 broad.mit.edu 36 X 138506461 138506461 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099855 exon22 c.A2370C p.E790D . . . ATP11C 286410 broad.mit.edu 36 X 138712114 138712114 + Silent SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010986 exon7 c.C615A p.I205I . . . CSF2RA 1438 broad.mit.edu 36 X 1388404 1388404 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172246 exon11 c.C1056A p.I352I . . . MAGEC3 139081 broad.mit.edu 36 X 140797171 140797171 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138702 exon4 c.C832A p.L278I . . . MAGEC1 9947 broad.mit.edu 36 X 140821039 140821039 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005462 exon4 c.G183T p.E61D . . . MAGEC1 9947 broad.mit.edu 36 X 140821524 140821524 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005462 exon4 c.G668T p.S223I . . . MAGEC1 9947 broad.mit.edu 36 X 140823734 140823734 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005462 exon4 c.C2878T p.L960F . . . SLITRK4 139065 broad.mit.edu 36 X 142544922 142544922 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173078 exon2 c.G1669T p.E557X . . . SLITRK2 84631 broad.mit.edu 36 X 144713784 144713784 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144006 exon3 c.G2149T p.E717X . . . AFF2 2334 broad.mit.edu 36 X 147845784 147845784 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002025 exon11 c.C2509T p.R837C . . . MOSPD2 158747 broad.mit.edu 36 X 14825156 14825156 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152581 exon5 c.G352T p.D118Y . . . TMEM185A 84548 broad.mit.edu 36 X 148498307 148498307 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032508 exon3 c.G226T p.E76X . . . TMEM185A 84548 broad.mit.edu 36 X 148500772 148500772 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032508 exon2 c.C214T p.R72X . . . MTMR1 8776 broad.mit.edu 36 X 149669875 149669875 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003828 exon13 c.G1558A p.E520K . . . CNGA2 1260 broad.mit.edu 36 X 150662376 150662376 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005140 exon7 c.C745T p.R249C . . . MAGEA3 4102 broad.mit.edu 36 X 151686189 151686189 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005362 exon3 c.G634T p.E212X . . . PIGA 5277 broad.mit.edu 36 X 15249636 15249636 + Silent SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020473 exon5 c.T666C p.D222D . . . L1CAM 3897 broad.mit.edu 36 X 152783516 152783516 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143963 exon21 c.C2985T p.G995G . . . FIGF 2277 broad.mit.edu 36 X 15286215 15286215 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004469 exon3 c.G323T p.R108I . . . TKTL1 8277 broad.mit.edu 36 X 153202428 153202428 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145933 exon8 c.T1142C p.I381T . . . DKC1 1736 broad.mit.edu 36 X 153656735 153656735 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001363 exon13 c.C1331T p.T444I . . . F8 2157 broad.mit.edu 36 X 153811550 153811550 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon14 c.A3709G p.T1237A . . . RAB39B 116442 broad.mit.edu 36 X 154143611 154143611 + Missense_Mutation SNP C G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_171998 exon2 c.G313C p.E105Q . . . SPRY3 10251 broad.mit.edu 36 X 154657068 154657068 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005840 exon2 c.G341A p.R114Q . . . MAP7D2 256714 broad.mit.edu 36 X 19938893 19938893 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168465 exon16 c.C2271T p.I757I . . . RPS6KA3 6197 broad.mit.edu 36 X 20132108 20132108 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004586 exon4 c.C278A p.A93D . . . ACOT9 23597 broad.mit.edu 36 X 23661252 23661252 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037171 exon4 c.G149A p.R50Q . . . CXorf58 254158 broad.mit.edu 36 X 23866649 23866649 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152761 exon8 c.C850A p.L284M . . . POLA1 5422 broad.mit.edu 36 X 24661848 24661848 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016937 exon17 c.G1809T p.E603D . . . IL1RAPL1 11141 broad.mit.edu 36 X 29211041 29211041 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014271 exon3 c.C148T p.R50X . . . IL1RAPL1 11141 broad.mit.edu 36 X 29324416 29324416 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014271 exon4 c.A483C p.E161D . . . TAB3 257397 broad.mit.edu 36 X 30774660 30774660 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152787 exon8 c.G1733T p.R578I . . . DMD 1756 broad.mit.edu 36 X 32271284 32271284 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004011 exon12 c.C1604A p.S535Y . . . MXRA5 25878 broad.mit.edu 36 X 3250135 3250135 + Silent SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon5 c.G3591A p.E1197E . . . DMD 1756 broad.mit.edu 36 X 32572303 32572303 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004006 exon11 c.C1198A p.L400I . . . FAM47A 158724 broad.mit.edu 36 X 34060121 34060121 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203408 exon1 c.G196A p.E66K . . . CXorf22 170063 broad.mit.edu 36 X 35903886 35903886 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon15 c.C2648T p.A883V . . . XK 7504 broad.mit.edu 36 X 37472345 37472345 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021083 exon3 c.C1026A p.I342I . . . CYBB 1536 broad.mit.edu 36 X 37536186 37536186 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000397 exon4 c.C271T p.R91X . . . RPGR 6103 broad.mit.edu 36 X 38043293 38043293 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000328 exon10 c.C1105T p.R369C . . . MID1IP1 58526 broad.mit.edu 36 X 38549261 38549261 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098791 exon2 c.G118A p.D40N . . . BCOR 54880 broad.mit.edu 36 X 39799572 39799572 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123383 exon12 c.C4632A p.F1544L . . . USP9X 8239 broad.mit.edu 36 X 40881100 40881100 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon6 c.A535C p.N179H . . . EFHC2 80258 broad.mit.edu 36 X 43979612 43979612 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025184 exon9 c.C1306T p.R436C . . . ZNF673 55634 broad.mit.edu 36 X 46217239 46217239 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017776 exon6 c.G349A p.E117K . . . ZNF674 641339 broad.mit.edu 36 X 46244458 46244458 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190417 exon6 c.A1495C p.K499Q . . . PHF16 9767 broad.mit.edu 36 X 46802564 46802564 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014735 exon11 c.G1613T p.R538I . . . CDK16 5127 broad.mit.edu 36 X 46968829 46968829 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006201 exon3 c.C304T p.R102C . . . ARAF 369 broad.mit.edu 36 X 47309432 47309432 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001654 exon5 c.T408C p.C136C . . . ZNF81 347344 broad.mit.edu 36 X 47660458 47660458 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007137 exon5 c.G1469T p.R490I . . . ZNF182 7569 broad.mit.edu 36 X 47721081 47721081 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006962 exon7 c.G1349T p.R450I . . . WDR13 64743 broad.mit.edu 36 X 48345413 48345413 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166426 exon6 c.C753A p.A251A . . . GRIPAP1 56850 broad.mit.edu 36 X 48732429 48732429 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020137 exon7 c.C495A p.F165L . . . CLCN5 1184 broad.mit.edu 36 X 49737964 49737964 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127899 exon11 c.G1254T p.K418N . . . AKAP4 8852 broad.mit.edu 36 X 49848300 49848300 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003886 exon4 c.G258T p.E86D . . . CCNB3 85417 broad.mit.edu 36 X 50070709 50070709 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033031 exon5 c.A2800C p.N934H . . . NUDT11 55190 broad.mit.edu 36 X 51255890 51255890 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018159 exon1 c.C147T p.G49G . . . PHF8 23133 broad.mit.edu 36 X 54057686 54057686 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184898 exon7 c.G632A p.R211Q . . . WNK3 65267 broad.mit.edu 36 X 54354360 54354360 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002838 exon3 c.T627G p.F209L . . . FGD1 2245 broad.mit.edu 36 X 54511995 54511995 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004463 exon5 c.C1141T p.L381F . . . MAGED2 10916 broad.mit.edu 36 X 54858446 54858446 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201222 exon12 c.G1427A p.R476Q . . . TRO 7216 broad.mit.edu 36 X 54973508 54973508 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039705 exon12 c.T3626C p.F1209S . . . PFKFB1 5207 broad.mit.edu 36 X 54999362 54999362 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002625 exon7 c.G587T p.R196I . . . NLGN4X 57502 broad.mit.edu 36 X 5821344 5821344 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon6 c.A1965G p.K655K . . . FAM123B 139285 broad.mit.edu 36 X 63328271 63328271 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.A1621C p.N541H . . . FAM123B 139285 broad.mit.edu 36 X 63328843 63328843 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.G1049A p.R350K . . . ZC3H12B 340554 broad.mit.edu 36 X 64635823 64635823 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010888 exon3 c.C968A p.S323Y . . . MSN 4478 broad.mit.edu 36 X 64868462 64868462 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002444 exon6 c.G589T p.D197Y . . . HEPH 9843 broad.mit.edu 36 X 65396818 65396818 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130860 exon19 c.T3197G p.F1066C . . . OPHN1 4983 broad.mit.edu 36 X 67338196 67338196 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002547 exon11 c.A1015G p.T339A . . . OPHN1 4983 broad.mit.edu 36 X 67569436 67569436 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002547 exon2 c.G152T p.R51I . . . IGBP1 3476 broad.mit.edu 36 X 69283360 69283360 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001551 exon4 c.A635G p.D212G . . . RAB41 347517 broad.mit.edu 36 X 69419406 69419406 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032726 exon3 c.G210T p.K70N . . . KIF4A 24137 broad.mit.edu 36 X 69435702 69435702 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012310 exon5 c.A441C p.E147D . . . GDPD2 54857 broad.mit.edu 36 X 69561633 69561633 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017711 exon2 c.A74C p.K25T . . . TEX11 56159 broad.mit.edu 36 X 69747111 69747111 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003811 exon22 c.G1804T p.E602X . . . MED12 9968 broad.mit.edu 36 X 70277430 70277430 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005120 exon42 c.C6265T p.R2089W . . . NLGN3 54413 broad.mit.edu 36 X 70300842 70300842 + Silent SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166660 exon4 c.C732A p.V244V . . . TAF1 6872 broad.mit.edu 36 X 70533939 70533939 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138923 exon23 c.G3515A p.R1172Q . . . OGT 8473 broad.mit.edu 36 X 70699527 70699527 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181673 exon16 c.A2053G p.K685E . . . ERCC6L 54821 broad.mit.edu 36 X 71343828 71343828 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017669 exon2 c.G1514A p.R505Q . . . PHKA1 5255 broad.mit.edu 36 X 71719092 71719092 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172436 exon29 c.C3163A p.L1055M . . . ABCB7 22 broad.mit.edu 36 X 74205642 74205642 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004299 exon12 c.C1587T p.S529S . . . BRWD3 254065 broad.mit.edu 36 X 79835116 79835116 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon28 c.C3242A p.S1081Y . . . BRWD3 254065 broad.mit.edu 36 X 79870908 79870908 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon14 c.C1385A p.S462Y . . . BRWD3 254065 broad.mit.edu 36 X 79887830 79887830 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon7 c.T485C p.F162S . . . POU3F4 5456 broad.mit.edu 36 X 82650508 82650508 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000307 exon1 c.G520A p.E174K . . . CYLC1 1538 broad.mit.edu 36 X 83014822 83014822 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021118 exon4 c.G450T p.E150D . . . CYLC1 1538 broad.mit.edu 36 X 83015700 83015700 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021118 exon4 c.C1328A p.S443Y . . . RPS6KA6 27330 broad.mit.edu 36 X 83248635 83248635 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014496 exon14 c.C1181T p.S394F . . . HDX 139324 broad.mit.edu 36 X 83610560 83610560 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177479 exon4 c.G827T p.R276I . . . DACH2 117154 broad.mit.edu 36 X 85956387 85956387 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053281 exon10 c.G1578A p.K526K . . . KLHL4 56062 broad.mit.edu 36 X 86659891 86659891 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057162 exon1 c.G339T p.K113N . . . CPXCR1 53336 broad.mit.edu 36 X 87895961 87895961 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184771 exon3 c.G890T p.S297I . . . FAM9B 171483 broad.mit.edu 36 X 8957410 8957410 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205849 exon5 c.G331T p.E111X . . . PCDH11X 27328 broad.mit.edu 36 X 91018753 91018753 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon2 c.C858A p.F286L . . . NAP1L3 4675 broad.mit.edu 36 X 92814212 92814212 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004538 exon1 c.G748T p.E250X . . . FAM133A 286499 broad.mit.edu 36 X 92851752 92851752 + Silent SNP G A A novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171110 exon5 c.G678A p.K226K . . . DIAPH2 1730 broad.mit.edu 36 X 96099787 96099787 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006729 exon16 c.G1919T p.R640I . . . GPR143 4935 broad.mit.edu 36 X 9671655 9671655 + Silent SNP T C C novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000273 exon6 c.A717G p.G239G . . . PCDH19 57526 broad.mit.edu 36 X 99549942 99549942 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3892-01A-01W-1073-09 TCGA-AG-3892-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon1 c.G310A p.E104K . . .