Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PSMD13 5719 broad.mit.edu 36 11 234118 234118 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175932 exon2 c.T173C p.I58T . . . OR5L1 219437 broad.mit.edu 36 11 55335817 55335817 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001004738 exon1 c.A299G p.Q100R . . . MPEG1 219972 broad.mit.edu 36 11 58736218 58736218 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001039396 exon1 c.C697T p.R233C . . . GRM5 2915 broad.mit.edu 36 11 87970061 87970061 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000842 exon6 c.C1502T p.S501F . . . DNAH10 196385 broad.mit.edu 36 12 122833760 122833760 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_207437 exon7 c.C812T p.P271L . . . TMEM132D 121256 broad.mit.edu 36 12 128388231 128388231 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133448 exon4 c.G1200A p.T400T . . . KRAS 3845 broad.mit.edu 36 12 25269829 25269829 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004985 exon4 c.G436A p.A146T KRAS,large_intestine,NS,Substitution - Missense,0 . . TIMELESS 8914 broad.mit.edu 36 12 55103754 55103754 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003920 exon17 c.G1971A p.Q657Q . . . PCDH9 5101 broad.mit.edu 36 13 66699924 66699924 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020403 exon2 c.C650A p.T217N . . . LTBP2 4053 broad.mit.edu 36 14 74039977 74039978 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000428 exon32 c.4668_4669insC p.P1556fs . . . DIO2 1734 broad.mit.edu 36 14 79738967 79738967 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000793 exon3 c.C640T p.R214C . . . AK7 122481 broad.mit.edu 36 14 96014681 96014681 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152327 exon15 c.G1682A p.R561Q . . . POTEB 339010 broad.mit.edu 36 15 19331030 19331030 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207355 exon3 c.C730A p.H244N . . . HERC2 8924 broad.mit.edu 36 15 26165608 26165608 + Missense_Mutation SNP A T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004667 exon22 c.T3266A p.L1089Q . . . IGDCC3 9543 broad.mit.edu 36 15 63408891 63408891 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004884 exon13 c.C2095T p.R699W . . . SPATA8 145946 broad.mit.edu 36 15 95128478 95128478 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173499 exon2 c.T181C p.W61R . . . LRRK1 79705 broad.mit.edu 36 15 99418919 99418919 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024652 exon30 c.C4700A p.T1567K . . . CMTM2 146225 broad.mit.edu 36 16 65171034 65171034 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199317 exon1 c.G23A p.G8E . . . ADAMTS18 170692 broad.mit.edu 36 16 75884492 75884492 + Silent SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199355 exon20 c.C3171T p.V1057V . . . ATP2C2 9914 broad.mit.edu 36 16 83051813 83051813 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014861 exon24 c.G2386A p.V796M . . . GRIN2A 2903 broad.mit.edu 36 16 9830960 9830960 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001134408 exon9 c.G1828A p.G610S . . . TP53 7157 broad.mit.edu 36 17 7517819 7517819 + Missense_Mutation SNP G A A rs28934574 unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon8 c.C844T p.R282W TP53,central_nervous_system,brain,Substitution - Missense,-2 . . DNAH2 146754 broad.mit.edu 36 17 7631014 7631014 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020877 exon41 c.G6541A p.V2181I . . . MC5R 4161 broad.mit.edu 36 18 13816480 13816480 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005913 exon1 c.C716T p.T239I . . . COLEC12 81035 broad.mit.edu 36 18 347502 347502 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_130386 exon3 c.T79C p.C27R . . . CATSPERG 57828 broad.mit.edu 36 19 43543115 43543115 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021185 exon15 c.C1755T p.S585S . . . TICAM1 148022 broad.mit.edu 36 19 4767756 4767756 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_182919 exon2 c.A1634G p.D545G . . . CD177 57126 broad.mit.edu 36 19 48549932 48549932 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020406 exon2 c.C140T p.T47I . . . GRIN2D 2906 broad.mit.edu 36 19 53636992 53636992 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000836 exon11 c.A2407G p.I803V . . . ZNF578 147660 broad.mit.edu 36 19 57706617 57706617 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001099694 exon6 c.G1171T p.A391S . . . CAPZA1 829 broad.mit.edu 36 1 112998650 112998650 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006135 exon5 c.T260G p.F87C . . . KISS1 3814 broad.mit.edu 36 1 202426446 202426446 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002256 exon3 c.C206A p.T69N . . . KCNK1 3775 broad.mit.edu 36 1 231869044 231869044 + Missense_Mutation SNP C G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002245 exon2 c.C436G p.L146V . . . HEATR1 55127 broad.mit.edu 36 1 234788389 234788389 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018072 exon36 c.G4975A p.G1659R . . . RYR2 6262 broad.mit.edu 36 1 235844438 235844438 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001035 exon37 c.C5387A p.T1796K . . . OR2T8 343172 broad.mit.edu 36 1 246151093 246151093 + Missense_Mutation SNP C G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005522 exon1 c.C151G p.H51D . . . DIO1 1733 broad.mit.edu 36 1 54144546 54144546 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001039715 exon2 c.C528T p.I176I . . . DPYD 1806 broad.mit.edu 36 1 97317169 97317169 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000110 exon23 c.C3029A p.P1010H . . . MMP9 4318 broad.mit.edu 36 20 44075367 44075367 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004994 exon9 c.C1397T p.T466M . . . ARFRP1 10139 broad.mit.edu 36 20 61808517 61808517 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001134758 exon3 c.G111A p.S37S . . . TIAM1 7074 broad.mit.edu 36 21 31446924 31446924 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003253 exon20 c.G3267A p.T1089T . . . PCDP1 200373 broad.mit.edu 36 2 120085739 120085739 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001029996 exon14 c.G404A p.R135Q . . . LRP1B 53353 broad.mit.edu 36 2 141523223 141523223 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018557 exon11 c.C1591T p.R531C . . . COBLL1 22837 broad.mit.edu 36 2 165292806 165292806 + Missense_Mutation SNP G C C novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014900 exon4 c.C580G p.Q194E . . . CHRNA1 1134 broad.mit.edu 36 2 175332327 175332327 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000079 exon3 c.C212A p.T71K . . . TTN 7273 broad.mit.edu 36 2 179148777 179148777 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003319 exon154 c.G43132A p.G14378S . . . TTN 7273 broad.mit.edu 36 2 179181365 179181365 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003319 exon103 c.A25295G p.N8432S . . . TTN 7273 broad.mit.edu 36 2 179194950 179194950 + Nonsense_Mutation SNP T A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003319 exon72 c.A17749T p.K5917X . . . ABCA12 26154 broad.mit.edu 36 2 215584483 215584483 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173076 exon17 c.C2257A p.H753N . . . NRXN1 9378 broad.mit.edu 36 2 50002862 50002862 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138735 exon6 c.G1053A p.P351P . . . NRXN1 9378 broad.mit.edu 36 2 50700782 50700782 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001135659 exon9 c.C1322T p.T441M . . . SLC4A5 57835 broad.mit.edu 36 2 74336566 74336566 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021196 exon8 c.G869A p.R290Q . . . GPAT2 150763 broad.mit.edu 36 2 96052656 96052656 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207328 exon19 c.C2074T p.R692C . . . GUCA1C 9626 broad.mit.edu 36 3 110155272 110155272 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005459 exon1 c.G28A p.D10N . . . ARHGAP31 57514 broad.mit.edu 36 3 120603780 120603780 + Silent SNP C T T rs61747387 by1000genomes TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020754 exon10 c.C1491T p.R497R . . . FBXO40 51725 broad.mit.edu 36 3 122822989 122822989 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016298 exon3 c.C23T p.P8L . . . CAND2 23066 broad.mit.edu 36 3 12833310 12833310 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001162499 exon10 c.C1879T p.R627W . . . MCF2L2 23101 broad.mit.edu 36 3 184628384 184628384 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015078 exon1 c.G76A p.D26N . . . ABCC5 10057 broad.mit.edu 36 3 185153599 185153599 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005688 exon18 c.G2636A p.W879X . . . SGOL1 151648 broad.mit.edu 36 3 20187295 20187295 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001012409 exon8 c.G1489A p.D497N . . . COL7A1 1294 broad.mit.edu 36 3 48596945 48596945 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000094 exon35 c.C4096T p.R1366W COL7A1,breast,NS,Substitution - Missense,0 . . PROS1 5627 broad.mit.edu 36 3 95100057 95100057 + Silent SNP A G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000313 exon8 c.T774C p.N258N . . . BANK1 55024 broad.mit.edu 36 4 103165638 103165638 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017935 exon9 c.C1543T p.R515X . . . TRIML2 205860 broad.mit.edu 36 4 189249776 189249776 + Missense_Mutation SNP C G G novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173553 exon7 c.G909C p.W303C . . . DRD5 1816 broad.mit.edu 36 4 9393586 9393586 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000798 exon1 c.G835A p.A279T . . . WDR36 134430 broad.mit.edu 36 5 110455945 110455945 + Silent SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139281 exon1 c.G60T p.V20V . . . APC 324 broad.mit.edu 36 5 112206482 112206482 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.G7238A p.R2413K . . . TRPC7 57113 broad.mit.edu 36 5 135720651 135720651 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020389 exon2 c.C324T p.D108D . . . PCDHA2 56146 broad.mit.edu 36 5 140156099 140156099 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018905 exon1 c.G1366A p.A456T . . . FAT2 2196 broad.mit.edu 36 5 150913096 150913096 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001447 exon5 c.C3991T p.R1331W . . . FAT2 2196 broad.mit.edu 36 5 150926917 150926917 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001447 exon1 c.A1769G p.D590G . . . MYO10 4651 broad.mit.edu 36 5 16733134 16733134 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012334 exon33 c.G4464T p.W1488C . . . PAPD4 167153 broad.mit.edu 36 5 78974462 78974462 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114394 exon7 c.G724A p.V242I . . . APC 324 broad.mit.edu 36 5 112201679 112201679 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon14 c.2435delT p.V812fs . . . APC 324 broad.mit.edu 36 5 112203067 112203068 + Frame_Shift_Del DEL AC - - novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 AC AC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.3823_3824del p.1275_1275del . . . PRIM2 5558 broad.mit.edu 36 6 57621099 57621100 + Splice_Site INS - AACA AACA novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . SCAND3 114821 broad.mit.edu 36 6 28649578 28649578 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052923 exon4 c.G2067A p.A689A . . . PTCRA 171558 broad.mit.edu 36 6 42998824 42998824 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138296 exon2 c.G140T p.C47F . . . CUL7 9820 broad.mit.edu 36 6 43121346 43121346 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014780 exon14 c.G2819A p.R940H . . . OR2A14 135941 broad.mit.edu 36 7 143457804 143457804 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001659 exon1 c.C666T p.A222A . . . ADCY1 107 broad.mit.edu 36 7 45714505 45714505 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021116 exon18 c.C2849T p.T950M . . . SEMA3E 9723 broad.mit.edu 36 7 82874381 82874381 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012431 exon7 c.G781A p.A261T . . . DENND3 22898 broad.mit.edu 36 8 142247359 142247359 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014957 exon13 c.G1588A p.V530M . . . MCM4 4173 broad.mit.edu 36 8 49049963 49049963 + Silent SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182746 exon15 c.C2253T p.N751N . . . PXDNL 137902 broad.mit.edu 36 8 52558795 52558795 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144651 exon6 c.C485T p.P162L . . . C9orf79 286234 broad.mit.edu 36 9 89693376 89693376 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178828 exon4 c.G4154A p.G1385D . . . HCCS 3052 broad.mit.edu 36 X 11049781 11049781 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005333 exon7 c.G737A p.R246H . . . DCAF12L2 340578 broad.mit.edu 36 X 125126740 125126740 + Silent SNP G A A novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001013628 exon1 c.C849T p.D283D . . . DMD 1756 broad.mit.edu 36 X 32777789 32777789 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004006 exon3 c.G163A p.E55K . . . TEX11 56159 broad.mit.edu 36 X 69665741 69665741 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001003811 exon31 c.C2752A p.L918I . . . KIAA2022 340533 broad.mit.edu 36 X 73877099 73877099 + Missense_Mutation SNP G T T rs35225038 unknown TCGA-AG-3909-01A-01W-1073-09 TCGA-AG-3909-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008537 exon3 c.C4018A p.P1340T . . .