Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf46	143384	broad.mit.edu	36	10	120504099	120504100	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153810	exon1	c.166_167insG	p.Q56fs	.	.	.
LZTS2	84445	broad.mit.edu	36	10	102756399	102756399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032429	exon5	c.C1494T	p.A498A	.	.	.
SH3PXD2A	9644	broad.mit.edu	36	10	105516894	105516894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014631	exon3	c.C177T	p.P59P	.	.	.
SYT15	83849	broad.mit.edu	36	10	46388593	46388593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181519	exon3	c.G349A	p.G117S	.	.	.
TLX1NB	100038246	broad.mit.edu	36	10	102839360	102839360	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085398	exon3	c.293delA	p.Q98fs	.	.	.
UBASH3B	84959	broad.mit.edu	36	11	122177231	122177231	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032873	exon11	c.A1576T	p.S526C	.	.	.
OPCML	4978	broad.mit.edu	36	11	131795298	131795298	+	Nonstop_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012393	exon8	c.G1016C	p.X339S	.	.	.
NAT10	55226	broad.mit.edu	36	11	34113376	34113377	+	Missense_Mutation	DNP	CT	TC	TC	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144030	exon17	c.1774_1775TC	.	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345180	4345180	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005161	exon1	c.T922G	p.F308V	.	.	.
OR5B21	219968	broad.mit.edu	36	11	58031304	58031304	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005218	exon1	c.C851T	p.P284L	.	.	.
OR5A1	219982	broad.mit.edu	36	11	58967412	58967412	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004728	exon1	c.C195T	p.F65F	.	.	.
OR5A1	219982	broad.mit.edu	36	11	58967856	58967856	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004728	exon1	c.G639A	p.S213S	.	.	.
ESRRA	2101	broad.mit.edu	36	11	63839997	63839997	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004451	exon7	c.G1255A	p.E419K	.	.	.
CLEC1A	51267	broad.mit.edu	36	12	10125126	10125126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016511	exon3	c.G368A	p.R123H	.	.	.
CCDC62	84660	broad.mit.edu	36	12	121847847	121847847	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201435	exon7	c.G813A	p.A271A	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
DIP2B	57609	broad.mit.edu	36	12	49414211	49414211	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173602	exon33	c.T4008G	p.T1336T	.	.	.
C13orf39	196541	broad.mit.edu	36	13	102144752	102144752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010977	exon1	c.C98T	p.P33L	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112787451	112787451	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024979	exon20	c.G2217T	p.L739L	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18947728	18947728	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199254	exon6	c.C215A	p.S72X	.	.	.
SACS	26278	broad.mit.edu	36	13	22808682	22808682	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014363	exon10	c.G7333T	p.E2445X	.	.	.
WASF3	10810	broad.mit.edu	36	13	26148749	26148749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006646	exon7	c.C604T	p.R202C	.	.	.
RBM26	64062	broad.mit.edu	36	13	78809345	78809345	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022118	exon18	c.C2545T	p.R849X	.	.	.
HS6ST3	266722	broad.mit.edu	36	13	96283096	96283096	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153456	exon2	c.C1059T	p.L353L	.	.	.
FARP1	10160	broad.mit.edu	36	13	97859753	97859753	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005766	exon14	c.G1575A	p.T525T	.	.	.
TDRD9	122402	broad.mit.edu	36	14	103578242	103578242	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153046	exon34	c.G3939A	p.A1313A	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29138000	29138000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002742	exon15	c.C2150T	p.A717V	.	.	.
NARG2	79664	broad.mit.edu	36	15	58546094	58546094	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024611	exon5	c.C519G	p.L173L	.	.	.
CYP11A1	1583	broad.mit.edu	36	15	72424577	72424580	+	Frame_Shift_Del	DEL	CTCT	-	-	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	CTCT	CTCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000781	exon3	c.483_486del	p.161_162del	.	.	.
PTX4	390667	broad.mit.edu	36	16	1477808	1477808	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013658	exon2	c.G291A	p.A97A	.	.	.
MPRIP	23164	broad.mit.edu	36	17	17017969	17017969	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015134	exon18	c.C2444T	p.S815L	.	.	.
C17orf42	79736	broad.mit.edu	36	17	26255287	26255287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024683	exon2	c.C418T	p.R140W	.	.	.
AOC3	8639	broad.mit.edu	36	17	38258233	38258233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003734	exon1	c.G1347A	p.S449S	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60985005	60985005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004655	exon2	c.G196A	p.E66K	.	.	.
CD300C	10871	broad.mit.edu	36	17	70050708	70050708	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006678	exon3	c.A414G	p.T138T	.	.	.
NUP85	79902	broad.mit.edu	36	17	70717557	70717557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024844	exon3	c.C172T	p.R58C	.	.	.
ZBTB4	57659	broad.mit.edu	36	17	7307268	7307268	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020899	exon4	c.C1757G	p.T586R	.	.	.
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C916T	p.R306X	 TP53,large_intestine,rectum,Substitution - Nonsense,0 	.	.
SPHK1	8877	broad.mit.edu	36	17	71893642	71893643	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021972	exon3	c.34_35del	p.12_12del	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750747	22750747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031422	exon6	c.G806A	p.R269H	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42514282	42514282	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013305	exon7	c.C852T	p.N284N	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005359	exon9	c.G1082A	p.R361H	 SMAD4,small_intestine,duodenum,Substitution - Missense,+1 	.	.
SGTA	6449	broad.mit.edu	36	19	2718633	2718633	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003021	exon3	c.A152G	p.D51G	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35731645	35731645	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014717	exon4	c.C3279T	p.S1093S	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45084200	45084200	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003890	exon16	c.C8144T	p.A2715V	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47572368	47572368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001410	exon41	c.C7938T	p.S2646S	.	.	.
TSKS	60385	broad.mit.edu	36	19	54940417	54940417	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021733	exon7	c.G1041A	p.A347A	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230387	61230387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153447	exon7	c.C976T	p.R326W	.	.	.
PDPN	10630	broad.mit.edu	36	1	13813459	13813459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001006624	exon5	c.G322A	p.V108I	.	.	.
FLG2	388698	broad.mit.edu	36	1	150591296	150591296	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001014342	exon3	c.C5590A	p.Q1864K	.	.	.
MNDA	4332	broad.mit.edu	36	1	157079799	157079799	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002432	exon3	c.G372A	p.S124S	.	.	.
OR10J3	441911	broad.mit.edu	36	1	157551024	157551024	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004467	exon1	c.T50C	p.F17S	.	.	.
TBX19	9095	broad.mit.edu	36	1	166527232	166527232	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005149	exon2	c.T414A	p.A138A	.	.	.
PADI6	353238	broad.mit.edu	36	1	17594672	17594672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207421	exon13	c.G1545A	p.P515P	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177630867	177630867	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144696	exon11	c.T1016A	p.L339Q	.	.	.
NCF2	4688	broad.mit.edu	36	1	181795899	181795899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190794	exon13	c.G1288A	p.D430N	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188334518	188334518	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199051	exon8	c.C1554T	p.D518D	.	.	.
ADORA1	134	broad.mit.edu	36	1	201401327	201401327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001048230	exon3	c.C657T	p.S219S	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216676104	216676104	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003238	exon5	c.T924C	p.Y308Y	.	.	.
TRIM67	440730	broad.mit.edu	36	1	229411517	229411517	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004342	exon8	c.G2021T	p.S674I	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29459867	29459867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005704	exon7	c.G1009A	p.V337I	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33936941	33936941	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052896	exon24	c.C3804T	p.V1268V	.	.	.
ZMYM1	79830	broad.mit.edu	36	1	35342650	35342650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024772	exon5	c.C587T	p.T196I	.	.	.
DAB1	1600	broad.mit.edu	36	1	57374900	57374900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021080	exon6	c.C210T	p.G70G	.	.	.
MYSM1	114803	broad.mit.edu	36	1	58928650	58928650	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085487	exon4	c.G246A	p.P82P	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74911774	74911774	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002912	exon1	c.C18T	p.P6P	.	.	.
NINL	22981	broad.mit.edu	36	20	25407760	25407760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025176	exon16	c.G2000A	p.R667H	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21803200	21803200	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004540	exon16	c.C2235T	p.G745G	.	.	.
ZDHHC8	29801	broad.mit.edu	36	22	18508426	18508426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013373	exon7	c.C785T	p.A262V	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22824116	22824116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199281	exon26	c.G4078A	p.V1360I	.	.	.
NTSR2	23620	broad.mit.edu	36	2	11717675	11717675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012344	exon3	c.C934T	p.P312S	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125237734	125237734	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130773	exon15	c.C2247A	p.G749G	.	.	.
MYO7B	4648	broad.mit.edu	36	2	128054822	128054822	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080527	exon10	c.C1035T	p.D345D	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133256181	133256181	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207363	exon14	c.C4673G	p.P1558R	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141360206	141360206	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon24	c.T3935G	p.I1312R	.	.	.
NEB	4703	broad.mit.edu	36	2	152208689	152208689	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164507	exon57	c.C7845T	p.C2615C	.	.	.
CACNB4	785	broad.mit.edu	36	2	152425537	152425537	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145798	exon10	c.A802G	p.R268G	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182096416	182096416	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000885	exon19	c.A2081G	p.K694R	.	.	.
STAT4	6775	broad.mit.edu	36	2	191614117	191614117	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003151	exon15	c.C1254A	p.G418G	.	.	.
APOB	338	broad.mit.edu	36	2	21080811	21080811	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000384	exon28	c.G11922A	p.A3974A	.	.	.
APOB	338	broad.mit.edu	36	2	21099349	21099349	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000384	exon18	c.C2675T	p.P892L	.	.	.
FN1	2335	broad.mit.edu	36	2	215955275	215955275	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212476	exon31	c.T4796C	p.I1599T	.	.	.
IRS1	3667	broad.mit.edu	36	2	227371030	227371030	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005544	exon1	c.C669T	p.I223I	.	.	.
AGBL5	60509	broad.mit.edu	36	2	27145974	27145974	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021831	exon14	c.G2385A	p.P795P	.	.	.
CALM2	805	broad.mit.edu	36	2	47251393	47251393	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001743	exon2	c.T18C	p.T6T	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79954821	79954821	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004389	exon6	c.G697A	p.V233I	.	.	.
ANKRD36B	57730	broad.mit.edu	36	2	97523109	97523109	+	Missense_Mutation	SNP	C	T	T	rs2463572	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025190	exon29	c.G1901A	p.R634Q	.	.	.
DCBLD2	131566	broad.mit.edu	36	3	100001083	100001083	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080927	exon16	c.A2151T	p.T717T	.	.	.
GAP43	2596	broad.mit.edu	36	3	116877607	116877607	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130064	exon3	c.A196T	p.K66X	.	.	.
PAQR9	344838	broad.mit.edu	36	3	144164418	144164418	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198504	exon1	c.G451A	p.A151T	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155323101	155323101	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015595	exon2	c.T630A	p.S210S	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173597730	173597730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135095	exon26	c.G3386A	p.R1129H	.	.	.
GP5	2814	broad.mit.edu	36	3	195599610	195599610	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004488	exon2	c.C691T	p.R231C	.	.	.
FBXL2	25827	broad.mit.edu	36	3	33395186	33395186	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171713	exon12	c.C696T	p.T232T	.	.	.
ULK4	54986	broad.mit.edu	36	3	41732047	41732047	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017886	exon24	c.T2473A	p.L825M	.	.	.
SPOCK3	50859	broad.mit.edu	36	4	167912448	167912448	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016950	exon9	c.T726A	p.D242E	.	.	.
SPOCK3	50859	broad.mit.edu	36	4	168158092	168158092	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016950	exon5	c.C342A	p.H114Q	.	.	.
MAPK10	5602	broad.mit.edu	36	4	87242117	87242117	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138981	exon2	c.T83C	p.M28T	.	.	.
APC	324	broad.mit.edu	36	5	112202783	112202783	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C3539G	p.S1180X	.	.	.
APC	324	broad.mit.edu	36	5	112203172	112203172	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C3928T	p.Q1310X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
PCDHB16	57717	broad.mit.edu	36	5	140543387	140543387	+	Missense_Mutation	SNP	C	G	G	rs17857089	byHapMap	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020957	exon1	c.C1069G	p.P357A	.	.	.
TCOF1	6949	broad.mit.edu	36	5	149756289	149756289	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135243	exon24	c.C4033T	p.R1345C	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156718686	156718686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037333	exon24	c.G2769A	p.Q923Q	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71526727	71526727	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005909	exon5	c.G1789T	p.E597X	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119379682	119379682	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024581	exon5	c.G1459T	p.A487S	.	.	.
PLG	5340	broad.mit.edu	36	6	161075024	161075024	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000301	exon13	c.G1595A	p.R532H	.	.	.
C4B	721	broad.mit.edu	36	6	32103093	32103093	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007293	exon21	c.T2695C	p.F899L	.	.	.
PDIA4	9601	broad.mit.edu	36	7	148331910	148331910	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004911	exon10	c.A1847T	p.K616I	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21693654	21693654	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003777	exon34	c.A5930G	p.Q1977R	.	.	.
SDK1	221935	broad.mit.edu	36	7	4239444	4239444	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152744	exon41	c.C5859A	p.D1953E	.	.	.
GET4	51608	broad.mit.edu	36	7	898507	898507	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015949	exon6	c.G672A	p.P224P	.	.	.
GNGT1	2792	broad.mit.edu	36	7	93378139	93378139	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021955	exon3	c.G198T	p.E66D	.	.	.
ANGPT1	284	broad.mit.edu	36	8	108333297	108333297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146	exon9	c.C1459T	p.R487C	.	.	.
NRBP2	340371	broad.mit.edu	36	8	144991449	144991449	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178564	exon13	c.G1087C	p.V363L	.	.	.
TSC1	7248	broad.mit.edu	36	9	134762466	134762466	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001162426	exon22	c.C2898T	p.G966G	.	.	.
APBA1	320	broad.mit.edu	36	9	71256956	71256956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163	exon9	c.G1870A	p.E624K	.	.	.
GLUD2	2747	broad.mit.edu	36	X	120009335	120009335	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012084	exon1	c.C116A	p.A39D	.	.	.
GPC3	2719	broad.mit.edu	36	X	132715500	132715500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164618	exon3	c.G659A	p.G220E	.	.	.
RPL10	6134	broad.mit.edu	36	X	153281455	153281455	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006013	exon5	c.T308C	p.L103S	.	.	.
NHS	4810	broad.mit.edu	36	X	17653814	17653814	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136024	exon7	c.A1136G	p.D379G	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36937518	36937518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013736	exon1	c.G1114A	p.E372K	.	.	.
OTC	5009	broad.mit.edu	36	X	38145603	38145603	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-4005-01A-01W-1073-09	TCGA-AG-4005-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000531	exon5	c.T518G	p.L173R	.	.	.