Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
BMS1	9790	broad.mit.edu	36	10	42602637	42602637	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014753	exon4	c.T383G	p.L128R	.	.	.
ZNF488	118738	broad.mit.edu	36	10	47990647	47990647	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153034	exon2	c.A109C	p.S37R	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102611650	102611650	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001377	exon62	c.A9607G	p.R3203G	.	.	.
HTR3B	9177	broad.mit.edu	36	11	113322060	113322060	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006028	exon9	c.C1317T	p.G439G	.	.	.
MLL	4297	broad.mit.edu	36	11	117849100	117849100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005933	exon3	c.C2016T	p.T672T	.	.	.
COPB1	1315	broad.mit.edu	36	11	14447481	14447481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016451	exon15	c.G1942A	p.E648K	.	.	.
TPH1	7166	broad.mit.edu	36	11	18004745	18004745	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004179	exon6	c.G671A	p.R224H	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32631309	32631309	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008391	exon12	c.G875A	p.R292Q	.	.	.
FGF19	9965	broad.mit.edu	36	11	69223454	69223454	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005117	exon3	c.C408T	p.S136S	 FGF19,skin,NS,Complex - compound substitution,0 	.	.
TCP11L2	255394	broad.mit.edu	36	12	105241554	105241554	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152772	exon6	c.A772T	p.S258C	.	.	.
PTPN11	5781	broad.mit.edu	36	12	111375512	111375512	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002834	exon4	c.G463T	p.D155Y	.	.	.
LRP6	4040	broad.mit.edu	36	12	12182687	12182687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002336	exon16	c.G3446A	p.G1149E	.	.	.
FGD4	121512	broad.mit.edu	36	12	32684580	32684580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139241	exon17	c.C2147T	p.S716F	.	.	.
TUBA1B	10376	broad.mit.edu	36	12	47808048	47808048	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006082	exon4	c.C1316A	p.S439Y	.	.	.
ATF1	466	broad.mit.edu	36	12	49460283	49460283	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005171	exon2	c.C88A	p.Q30K	.	.	.
ATF7	11016	broad.mit.edu	36	12	52217475	52217475	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006856	exon5	c.G393A	p.L131L	.	.	.
SILV	6490	broad.mit.edu	36	12	54637195	54637195	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006928	exon6	c.A1159G	p.T387A	.	.	.
NALCN	259232	broad.mit.edu	36	13	100734304	100734304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052867	exon10	c.G1115A	p.R372H	.	.	.
SACS	26278	broad.mit.edu	36	13	22812699	22812699	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014363	exon10	c.G3316T	p.V1106L	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35283094	35283094	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195416	exon8	c.C645A	p.H215Q	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37146384	37146384	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135957	exon5	c.A1355C	p.K452T	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69433467	69433467	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020866	exon3	c.G791T	p.W264L	.	.	.
AQP9	366	broad.mit.edu	36	15	56252628	56252628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020980	exon3	c.C308T	p.P103L	.	.	.
HMG20A	10363	broad.mit.edu	36	15	75558582	75558582	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018200	exon10	c.G914T	p.G305V	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99423115	99423115	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024652	exon32	c.G4950A	p.G1650G	.	.	.
NOMO1	23420	broad.mit.edu	36	16	14883969	14883969	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014287	exon26	c.C3045T	p.H1015H	.	.	.
PHKB	5257	broad.mit.edu	36	16	46280514	46280514	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031835	exon28	c.G2671T	p.D891Y	.	.	.
C16orf80	29105	broad.mit.edu	36	16	56705433	56705433	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013242	exon6	c.A579G	p.Q193Q	.	.	.
HLF	3131	broad.mit.edu	36	17	50747722	50747722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002126	exon3	c.G587A	p.R196H	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51786351	51786351	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153228	exon5	c.C555A	p.N185K	.	.	.
TP53	7157	broad.mit.edu	36	17	7517580	7517580	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon9	c.C991T	p.Q331X	 TP53,lung,NS,Substitution - Nonsense,0 	.	.
RNF213	57674	broad.mit.edu	36	17	75942839	75942839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020914	exon37	c.C10877T	p.S3626F	.	.	.
LGALS9	3965	broad.mit.edu	36	17	22991878	22991878	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_009587	exon3	c.285delG	p.K95fs	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59836400	59836400	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081639	exon7	c.G1080T	p.E360D	.	.	.
ZNF544	27300	broad.mit.edu	36	19	63464348	63464348	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014480	exon7	c.C564T	p.N188N	.	.	.
AMY2A	279	broad.mit.edu	36	1	103961736	103961736	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000699	exon1	c.G151T	p.G51X	.	.	.
TCHH	7062	broad.mit.edu	36	1	150347861	150347861	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007113	exon2	c.A4456G	p.K1486E	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155780948	155780948	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031281	exon5	c.G572A	p.R191H	.	.	.
NAV1	89796	broad.mit.edu	36	1	200044234	200044234	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167738	exon16	c.A2729G	p.K910R	.	.	.
NUDC	10726	broad.mit.edu	36	1	27144731	27144731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006600	exon8	c.C911T	p.S304L	.	.	.
ZC3H12A	80149	broad.mit.edu	36	1	37719992	37719992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025079	exon4	c.C787T	p.R263W	.	.	.
LEPR	3953	broad.mit.edu	36	1	65831013	65831013	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003679	exon6	c.T580G	p.C194G	.	.	.
HHLA3	11147	broad.mit.edu	36	1	70604726	70604726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001036645	exon2	c.G269A	p.R90Q	.	.	.
TM9SF4	9777	broad.mit.edu	36	20	30216891	30216891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014742	exon18	c.G1912A	p.A638T	.	.	.
SGK2	10110	broad.mit.edu	36	20	41638410	41638410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170693	exon11	c.C826T	p.R276W	.	.	.
PREX1	57580	broad.mit.edu	36	20	46701365	46701365	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020820	exon22	c.C2631T	p.R877R	.	.	.
DOK5	55816	broad.mit.edu	36	20	52641709	52641709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018431	exon5	c.G557A	p.R186Q	.	.	.
MYT1	4661	broad.mit.edu	36	20	62318902	62318902	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004535	exon11	c.A1670T	p.Y557F	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21668081	21668081	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004540	exon9	c.G1072T	p.G358W	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24752994	24752994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032608	exon43	c.G7054A	p.E2352K	.	.	.
SEC14L3	266629	broad.mit.edu	36	22	29196514	29196514	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174975	exon2	c.T110A	p.F37Y	.	.	.
BCL2L11	10018	broad.mit.edu	36	2	111598065	111598065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138621	exon2	c.G272A	p.R91Q	.	.	.
LRP2	4036	broad.mit.edu	36	2	169715751	169715751	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon68	c.C12493T	p.R4165C	.	.	.
HNRNPA3	220988	broad.mit.edu	36	2	177788594	177788594	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194247	exon2	c.C154T	p.R52X	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197353547	197353547	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012086	exon9	c.A1199G	p.N400S	.	.	.
SP140	11262	broad.mit.edu	36	2	230820948	230820948	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007237	exon8	c.G816A	p.E272E	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50002861	50002861	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138735	exon6	c.T1054C	p.Y352H	.	.	.
SFXN5	94097	broad.mit.edu	36	2	73121513	73121513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144579	exon3	c.G227A	p.R76H	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127307304	127307304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012190	exon22	c.G2608A	p.A870T	.	.	.
TRIM42	287015	broad.mit.edu	36	3	141884456	141884456	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152616	exon2	c.G804A	p.S268S	.	.	.
RASA2	5922	broad.mit.edu	36	3	142755430	142755430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006506	exon6	c.G569A	p.S190N	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	 PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.
CCBP2	1238	broad.mit.edu	36	3	42882082	42882082	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001296	exon3	c.A1084G	p.M362V	.	.	.
CENPE	1062	broad.mit.edu	36	4	104249535	104249535	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001813	exon48	c.C7885T	p.R2629W	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123073344	123073344	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003305	exon1	c.G300A	p.A100A	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164614266	164614266	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032136	exon1	c.G71A	p.R24Q	.	.	.
KDR	3791	broad.mit.edu	36	4	55659723	55659723	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002253	exon16	c.C2271T	p.A757A	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77463586	77463587	+	Splice_Site	DNP	TC	AG	AG	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042784	exon23	c.3158_3158CT	.	.	.	.
GRID2	2895	broad.mit.edu	36	4	94655487	94655487	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001510	exon13	c.T2095C	p.F699L	.	.	.
APC	324	broad.mit.edu	36	5	112203318	112203318	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.T4074A	p.Y1358X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
PCDHA12	56137	broad.mit.edu	36	5	140236925	140236925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031864	exon1	c.G1684A	p.A562T	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570718	140570718	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018932	exon1	c.G2055T	p.S685S	.	.	.
CDH12	1010	broad.mit.edu	36	5	21838076	21838076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004061	exon10	c.G1213A	p.A405T	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78395346	78395346	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013391	exon2	c.C122A	p.S41Y	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79804493	79804493	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105251	exon16	c.C4182G	p.N1394K	.	.	.
VCAN	1462	broad.mit.edu	36	5	82870105	82870105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164097	exon7	c.G2566A	p.D856N	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119337967	119337967	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024581	exon13	c.A2689G	p.I897V	.	.	.
CRISP2	7180	broad.mit.edu	36	6	49771542	49771542	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003296	exon9	c.C570T	p.A190A	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50790967	50790967	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172238	exon2	c.C219G	p.S73S	.	.	.
PARP12	64761	broad.mit.edu	36	7	139400984	139400984	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022750	exon4	c.A809T	p.E270V	.	.	.
KBTBD2	25948	broad.mit.edu	36	7	32875645	32875645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015483	exon4	c.G1709A	p.R570H	.	.	.
PILRB	29990	broad.mit.edu	36	7	99794566	99794566	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178238	exon2	c.G382A	p.E128K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113718341	113718341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198123	exon22	c.G3596A	p.G1199E	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116685283	116685283	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014112	exon4	c.A2088C	p.R696R	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139222712	139222712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015912	exon17	c.G3701A	p.R1234Q	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1613947	1613947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004745	exon9	c.G2209A	p.A737T	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3212076	3212076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon20	c.C3001T	p.R1001W	.	.	.
CDH17	1015	broad.mit.edu	36	8	95212108	95212108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144663	exon17	c.C2320T	p.R774W	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113174581	113174581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080398	exon43	c.G5011A	p.E1671K	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76621639	76621639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177310	exon10	c.C1181T	p.A394V	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109583072	109583072	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020769	exon3	c.G2571A	p.G857G	.	.	.
ATXN3L	92552	broad.mit.edu	36	X	13246960	13246960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135995	exon1	c.G1015A	p.D339N	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140810980	140810980	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138702	exon6	c.C1092T	p.T364T	.	.	.
MAGEC2	51438	broad.mit.edu	36	X	141118599	141118599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016249	exon3	c.G841A	p.G281R	.	.	.
RP2	6102	broad.mit.edu	36	X	46598219	46598219	+	Missense_Mutation	SNP	C	A	A	rs35565082	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006915	exon2	c.C467A	p.A156D	.	.	.
WDR13	64743	broad.mit.edu	36	X	48345181	48345181	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166426	exon5	c.C621T	p.G207G	.	.	.
RPS6KA6	27330	broad.mit.edu	36	X	83276451	83276451	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-4015-01A-01W-1073-09	TCGA-AG-4015-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014496	exon8	c.T641A	p.L214X	.	.	.