Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CNNM2	54805	broad.mit.edu	36	10	104669733	104669733	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199077	exon1	c.C1506T	p.F502F	.	.	.
ADD3	120	broad.mit.edu	36	10	111873956	111873956	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019903	exon10	c.T1335C	p.T445T	.	.	.
ZRANB1	54764	broad.mit.edu	36	10	126645336	126645336	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017580	exon2	c.C998G	p.T333R	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21845492	21845492	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207371	exon4	c.G1266A	p.E422E	.	.	.
P4HA1	5033	broad.mit.edu	36	10	74480949	74480949	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142595	exon8	c.A768G	p.K256K	.	.	.
MMP7	4316	broad.mit.edu	36	11	101906566	101906566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002423	exon1	c.G76A	p.G26S	.	.	.
C11orf49	79096	broad.mit.edu	36	11	47133322	47133322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024113	exon5	c.G385A	p.A129T	.	.	.
OR52L1	338751	broad.mit.edu	36	11	5963825	5963825	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005173	exon1	c.G912A	p.A304A	.	.	.
MS4A13	503497	broad.mit.edu	36	11	60042212	60042212	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100909	exon3	c.C80T	p.T27M	.	.	.
ALDH3B1	221	broad.mit.edu	36	11	67545845	67545845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030010	exon6	c.G767A	p.R256Q	.	.	.
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon4	c.G436A	p.A146T	 KRAS,large_intestine,NS,Substitution - Missense,0 	.	.
TMBIM4	51643	broad.mit.edu	36	12	64827973	64827973	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016056	exon4	c.C328G	p.L110V	.	.	.
SACS	26278	broad.mit.edu	36	13	22812840	22812840	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014363	exon10	c.G3175C	p.E1059Q	.	.	.
NBEA	26960	broad.mit.edu	36	13	34668298	34668298	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015678	exon31	c.A5225T	p.N1742I	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77375674	77375674	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122659	exon2	c.G553A	p.V185M	.	.	.
NAA30	122830	broad.mit.edu	36	14	56945892	56945892	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011713	exon5	c.C994G	p.L332V	.	.	.
TGM5	9333	broad.mit.edu	36	15	41318393	41318393	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004245	exon8	c.C1013A	p.T338K	.	.	.
LONP2	83752	broad.mit.edu	36	16	46852891	46852891	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031490	exon5	c.A779G	p.D260G	.	.	.
CES1	1066	broad.mit.edu	36	16	54401960	54401960	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001266	exon11	c.C1282T	p.P428S	.	.	.
TERF2IP	54386	broad.mit.edu	36	16	74247862	74247862	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018975	exon3	c.C1052T	p.A351V	.	.	.
ALKBH5	54890	broad.mit.edu	36	17	18050951	18050951	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017758	exon3	c.G949A	p.D317N	.	.	.
CCDC144NL	339184	broad.mit.edu	36	17	20739703	20739703	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004306	exon1	c.G223T	p.D75Y	.	.	.
ACCN1	40	broad.mit.edu	36	17	29507576	29507576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001094	exon1	c.G89A	p.R30H	.	.	.
CSH1	1442	broad.mit.edu	36	17	59326553	59326553	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022640	exon4	c.G468A	p.A156A	.	.	.
PRKAR1A	5573	broad.mit.edu	36	17	64030544	64030544	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212472	exon3	c.C230G	p.S77X	.	.	.
RAB37	326624	broad.mit.edu	36	17	70248589	70248589	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006638	exon2	c.G181T	p.A61S	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45125133	45125133	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003890	exon2	c.G976T	p.E326X	.	.	.
XRCC1	7515	broad.mit.edu	36	19	48742905	48742905	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006297	exon11	c.G1264A	p.G422R	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60142248	60142248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139176	exon4	c.C1751T	p.A584V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928143	8928143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.C20303T	p.A6768V	.	.	.
OLFM3	118427	broad.mit.edu	36	1	102068947	102068947	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_058170	exon3	c.G241T	p.E81X	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114807363	114807363	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015906	exon4	c.G809C	p.G270A	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144244485	144244485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003637	exon11	c.G1223A	p.R408H	.	.	.
ASTN1	460	broad.mit.edu	36	1	175104627	175104627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004319	exon22	c.G3623A	p.R1208Q	.	.	.
RASSF5	83593	broad.mit.edu	36	1	204824362	204824362	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182663	exon4	c.G711A	p.T237T	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26961346	26961346	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006015	exon7	c.C2368T	p.Q790X	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31134453	31134453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182519	exon2	c.G155A	p.R52K	.	.	.
CSE1L	1434	broad.mit.edu	36	20	47116156	47116156	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001316	exon4	c.A249G	p.K83K	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47423625	47423625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004975	exon2	c.C1879T	p.R627W	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57849892	57849892	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080672	exon11	c.G1494A	p.L498L	.	.	.
CRYBB2	1415	broad.mit.edu	36	22	23955450	23955450	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000496	exon5	c.C354T	p.T118T	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42282271	42282271	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198856	exon25	c.G3003A	p.P1001P	.	.	.
PXDN	7837	broad.mit.edu	36	2	1646412	1646412	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012293	exon12	c.C1539T	p.V513V	.	.	.
SP140L	93349	broad.mit.edu	36	2	230962954	230962954	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138402	exon11	c.A936T	p.G312G	.	.	.
TTC27	55622	broad.mit.edu	36	2	32812452	32812452	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193509	exon11	c.G1137T	p.K379N	.	.	.
SLC6A1	6529	broad.mit.edu	36	3	11045971	11045971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003042	exon12	c.G1256A	p.R419H	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180404247	180404247	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon5	c.T1035A	p.N345K	 PIK3CA,breast,NS,Substitution - Missense,0 	.	.
RNF168	165918	broad.mit.edu	36	3	197698697	197698697	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152617	exon3	c.G528T	p.E176D	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35808955	35808955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016300	exon19	c.G2110A	p.V704M	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881327	42881327	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001296	exon3	c.G329T	p.W110L	.	.	.
ALAS1	211	broad.mit.edu	36	3	52211639	52211639	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000688	exon4	c.G276A	p.P92P	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5913670	5913670	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001313	exon3	c.C297T	p.G99G	.	.	.
LRRTM2	26045	broad.mit.edu	36	5	138236631	138236631	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015564	exon2	c.T1518G	p.C506W	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156683642	156683642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037333	exon16	c.C1807T	p.H603Y	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167550032	167550032	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122679	exon14	c.G2655A	p.T885T	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118893369	118893369	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178035	exon14	c.T2319C	p.T773T	.	.	.
EYA4	2070	broad.mit.edu	36	6	133831407	133831407	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172103	exon10	c.C746A	p.S249Y	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29684441	29684441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021904	exon15	c.C1722T	p.G574G	.	.	.
SKIV2L	6499	broad.mit.edu	36	6	32038821	32038821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006929	exon13	c.C1377T	p.N459N	.	.	.
PTK7	5754	broad.mit.edu	36	6	43219328	43219329	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152880	exon13	c.2123_2124CT	.	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75908569	75908569	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon27	c.C4856G	p.T1619S	.	.	.
GJA10	84694	broad.mit.edu	36	6	90662131	90662131	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032602	exon1	c.A1223T	p.D408V	.	.	.
MACC1	346389	broad.mit.edu	36	7	20165606	20165606	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182762	exon5	c.C903G	p.F301L	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99153099	99153099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000765	exon5	c.G418A	p.G140R	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139695293	139695293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152888	exon56	c.C3977T	p.P1326L	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39764811	39764811	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001464	exon9	c.G759A	p.W253X	.	.	.
KCNB2	9312	broad.mit.edu	36	8	73642795	73642795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004770	exon2	c.G272A	p.R91Q	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77928656	77928656	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon10	c.A6944G	p.K2315R	.	.	.
C9orf171	389799	broad.mit.edu	36	9	134402844	134402844	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207417	exon5	c.G668A	p.R223Q	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17447636	17447636	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017738	exon19	c.C3229A	p.P1077T	.	.	.
NPR2	4882	broad.mit.edu	36	9	35782684	35782684	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003995	exon1	c.C279T	p.P93P	.	.	.
APBA1	320	broad.mit.edu	36	9	71320855	71320855	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163	exon2	c.C1092T	p.T364T	.	.	.
F8	2157	broad.mit.edu	36	X	153811917	153811917	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000132	exon14	c.G3342A	p.S1114S	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18833849	18833849	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000292	exon26	c.A2856G	p.K952K	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34872122	34872122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152631	exon1	c.G1253A	p.R418H	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821130	5821130	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A00H-01A-01W-A00E-09	TCGA-AG-A00H-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020742	exon6	c.G2179T	p.E727X	.	.	.