Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TET1	80312	broad.mit.edu	36	10	70003386	70003386	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_030625	exon2	c.T1285C	p.L429L	.	.	.
HTR3B	9177	broad.mit.edu	36	11	113321975	113321975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006028	exon9	c.G1232A	p.R411H	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118003995	118003995	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144758	exon6	c.C1246G	p.L416V	.	.	.
ZNF408	79797	broad.mit.edu	36	11	46683045	46683045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024741	exon5	c.C1219T	p.R407W	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69850498	69850498	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003626	exon7	c.G856T	p.D286Y	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78059183	78059183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098816	exon32	c.G5855A	p.R1952H	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50656524	50656524	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020327	exon3	c.C322T	p.Q108X	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50661241	50661241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020327	exon4	c.G646A	p.D216N	.	.	.
ZNF828	283489	broad.mit.edu	36	13	114107594	114107595	+	Missense_Mutation	DNP	GC	TT	TT	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164145	exon3	c.175_176TT	.	.	.	.
N6AMT2	221143	broad.mit.edu	36	13	20204020	20204020	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_174928	exon4	c.C468T	p.T156T	.	.	.
MYH7	4625	broad.mit.edu	36	14	22972682	22972682	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000257	exon3	c.A100G	p.K34E	.	.	.
FSCB	84075	broad.mit.edu	36	14	44044906	44044906	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032135	exon1	c.G1035T	p.E345D	.	.	.
C14orf49	161176	broad.mit.edu	36	14	94991706	94991706	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152592	exon5	c.G898A	p.G300R	 C14orf49,central_nervous_system,brain,Substitution - Missense,0 	.	.
NTRK3	4916	broad.mit.edu	36	15	86479545	86479545	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007156	exon9	c.C995T	p.T332M	.	.	.
SV2B	9899	broad.mit.edu	36	15	89596151	89596151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014848	exon4	c.G550A	p.V184I	.	.	.
CHD2	1106	broad.mit.edu	36	15	91346493	91346493	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001271	exon33	c.C4220A	p.S1407Y	.	.	.
PLD2	5338	broad.mit.edu	36	17	4666151	4666151	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002663	exon14	c.C1411T	p.R471X	.	.	.
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	T	T	rs11540652	byHapMap	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.G743A	p.R248Q	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,0 	.	.
TCEB3B	51224	broad.mit.edu	36	18	42815288	42815288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016427	exon1	c.G346A	p.A116T	.	.	.
CCDC123	84902	broad.mit.edu	36	19	38064663	38064663	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032816	exon18	c.C2062T	p.Q688X	.	.	.
ZNF793	390927	broad.mit.edu	36	19	42719845	42719845	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013659	exon8	c.A445T	p.N149Y	.	.	.
ARHGEF1	9138	broad.mit.edu	36	19	47088582	47088582	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198977	exon6	c.C337T	p.Q113X	.	.	.
BCAM	4059	broad.mit.edu	36	19	50014798	50014798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013257	exon13	c.C1738T	p.R580C	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon3	c.C181A	p.Q61K	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
FLG	2312	broad.mit.edu	36	1	150546698	150546698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002016	exon3	c.C7288T	p.R2430W	.	.	.
SPRR2E	6704	broad.mit.edu	36	1	151332817	151332817	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024209	exon2	c.G35T	p.C12F	.	.	.
C1orf65	164127	broad.mit.edu	36	1	221634507	221634507	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152610	exon1	c.C1067T	p.P356L	.	.	.
MTR	4548	broad.mit.edu	36	1	235065592	235065592	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000254	exon14	c.C1311T	p.S437S	.	.	.
EPHA10	284656	broad.mit.edu	36	1	37999701	37999701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099439	exon3	c.C813T	p.C271C	.	.	.
RIMKLA	284716	broad.mit.edu	36	1	42652753	42652753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173642	exon5	c.G697A	p.V233I	.	.	.
GBP1	2633	broad.mit.edu	36	1	89295337	89295337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002053	exon7	c.G943A	p.A315T	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49054351	49054351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002237	exon3	c.G1174A	p.A392T	.	.	.
KRTAP19-5	337972	broad.mit.edu	36	21	30796183	30796183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_181611	exon1	c.C97T	p.R33C	.	.	.
C21orf34	388815	broad.mit.edu	36	21	16365318	16365318	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38992734	38992734	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015088	exon5	c.C2554T	p.R852X	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42258042	42258042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198856	exon29	c.G3913A	p.A1305T	.	.	.
INHBB	3625	broad.mit.edu	36	2	120823368	120823368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002193	exon2	c.C672T	p.S224S	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175140053	175140053	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077269	exon7	c.G1447A	p.E483K	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179438750	179438750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173648	exon17	c.G2713A	p.E905K	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231970923	231970923	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145236	exon2	c.C249T	p.D83D	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237948283	237948283	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057166	exon5	c.C1369T	p.R457W	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124117360	124117360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031702	exon13	c.G1756A	p.E586K	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136367549	136367549	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004441	exon8	c.G1635A	p.S545S	.	.	.
PYDC2	152138	broad.mit.edu	36	3	192661834	192661834	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083308	exon1	c.C189T	p.S63S	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194562910	194562910	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_198505	exon5	c.C490T	p.H164Y	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515520	73515520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015009	exon10	c.G2887A	p.A963T	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292174	134292174	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032961	exon1	c.G1429A	p.V477M	.	.	.
VEGFC	7424	broad.mit.edu	36	4	177886038	177886038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005429	exon3	c.C440T	p.A147V	.	.	.
TUBB4Q	56604	broad.mit.edu	36	4	191141392	191141392	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020040	exon4	c.C583T	p.R195C	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87945468	87945468	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080684	exon41	c.T6094C	p.L2032L	.	.	.
APC	324	broad.mit.edu	36	5	112201696	112201697	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000038	exon16	c.2506_2507insC	p.S836fs	.	.	.
HARS2	23438	broad.mit.edu	36	5	140055380	140055380	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012208	exon5	c.G503A	p.R168H	.	.	.
PCDHA11	56138	broad.mit.edu	36	5	140231099	140231099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031861	exon1	c.G2227A	p.A743T	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140720571	140720571	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018923	exon1	c.C685T	p.R229X	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562797	23562797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020227	exon11	c.C1843T	p.R615W	.	.	.
OSMR	9180	broad.mit.edu	36	5	38960367	38960367	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003999	exon14	c.C1957T	p.Q653X	.	.	.
C5orf49	134121	broad.mit.edu	36	5	7885094	7885094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001089584	exon3	c.C313T	p.R105C	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80595155	80595155	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001825	exon10	c.C1104T	p.Y368Y	.	.	.
SCML4	256380	broad.mit.edu	36	6	108148701	108148701	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198081	exon6	c.G872A	p.R291H	.	.	.
HIST1H4D	8360	broad.mit.edu	36	6	26297044	26297044	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_003539	exon1	c.G240A	p.K80K	.	.	.
C6orf27	80737	broad.mit.edu	36	6	31843437	31843437	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_025258	exon11	c.A1577G	p.Q526R	.	.	.
PRPH2	5961	broad.mit.edu	36	6	42797802	42797802	+	Silent	SNP	G	A	A	rs61755775	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_000322	exon1	c.C249T	p.Y83Y	.	.	.
GABRR1	2569	broad.mit.edu	36	6	89967667	89967667	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_002042	exon3	c.G210A	p.S70S	.	.	.
GIMAP6	474344	broad.mit.edu	36	7	149956375	149956375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024711	exon3	c.C244T	p.R82W	.	.	.
CHST12	55501	broad.mit.edu	36	7	2438845	2438845	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina HiSeq	NM_018641	exon2	c.G45A	p.S15S	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77635262	77635262	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012301	exon15	c.G2503A	p.G835S	.	.	.
ANGPT1	284	broad.mit.edu	36	8	108428498	108428498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146	exon2	c.G301A	p.E101K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113598609	113598609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198123	exon28	c.G4586A	p.R1529H	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125178697	125178697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039112	exon36	c.G4700A	p.R1567H	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131139411	131139411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018482	exon28	c.G3286A	p.V1096I	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133221515	133221515	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004519	exon11	c.C1558T	p.R520X	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3007129	3007129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon38	c.G5804A	p.R1935Q	.	.	.
C9orf64	84267	broad.mit.edu	36	9	85749533	85749533	+	Silent	SNP	G	A	A	rs36082863	byFrequency	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032307	exon3	c.C789T	p.L263L	.	.	.
PLP1	5354	broad.mit.edu	36	X	102927299	102927299	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199478	exon2	c.T137A	p.L46Q	.	.	.
SCML2	10389	broad.mit.edu	36	X	18258682	18258682	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006089	exon3	c.A37T	p.K13X	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57951925	57951925	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A01L-01A-01W-A00K-09	TCGA-AG-A01L-10A-01W-A00L-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007156	exon1	c.A1655C	p.K552T	.	.	.