Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target FAM190B 54462 broad.mit.edu 36 10 86121987 86121987 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018999 exon2 c.C1199T p.S400L . . . TNKS2 80351 broad.mit.edu 36 10 93600990 93600990 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025235 exon21 c.A2732C p.E911A . . . ZNF518A 9849 broad.mit.edu 36 10 97910272 97910272 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014803 exon6 c.G4203T p.M1401I . . . SAA2 6289 broad.mit.edu 36 11 18226049 18226049 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199744 exon2 c.T86G p.F29C . . . DPF2 5977 broad.mit.edu 36 11 64875741 64875741 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006268 exon11 c.T1111A p.C371S . . . RRP8 23378 broad.mit.edu 36 11 6579171 6579171 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015324 exon3 c.G701A p.R234Q . . . IGHMBP2 3508 broad.mit.edu 36 11 68463602 68463602 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002180 exon15 c.C2809T p.R937C . . . CCDC81 60494 broad.mit.edu 36 11 85803870 85803870 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021827 exon12 c.G1288T p.E430X . . . TBX3 6926 broad.mit.edu 36 12 113603213 113603213 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005996 exon2 c.A511C p.M171L . . . SRRM4 84530 broad.mit.edu 36 12 118067670 118067670 + Silent SNP G C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_194286 exon9 c.G873C p.T291T . . . DNAH10 196385 broad.mit.edu 36 12 122855510 122855510 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_207437 exon17 c.T2603A p.I868N . . . SLCO1C1 53919 broad.mit.edu 36 12 20761408 20761408 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017435 exon7 c.T752C p.V251A . . . NCKAP1L 3071 broad.mit.edu 36 12 53196297 53196297 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001184976 exon10 c.A799C p.K267Q . . . CS 1431 broad.mit.edu 36 12 54954891 54954891 + Silent SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004077 exon9 c.T957C p.V319V . . . KIAA0564 23078 broad.mit.edu 36 13 41363656 41363656 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015058 exon5 c.A551G p.N184S . . . NEK5 341676 broad.mit.edu 36 13 51572004 51572004 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199289 exon12 c.T902C p.I301T . . . DIS3 22894 broad.mit.edu 36 13 72234151 72234151 + Silent SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001128226 exon17 c.T2163C p.A721A . . . SEC23A 10484 broad.mit.edu 36 14 38594219 38594219 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006364 exon14 c.T1538C p.I513T . . . SPTB 6710 broad.mit.edu 36 14 64340121 64340121 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001024858 exon3 c.G431A p.R144H . . . C15orf2 23742 broad.mit.edu 36 15 22473569 22473569 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018958 exon1 c.G1462A p.V488I . . . MYO9A 4649 broad.mit.edu 36 15 70098434 70098434 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006901 exon6 c.G1155A p.P385P . . . STRA6 64220 broad.mit.edu 36 15 72270602 72270602 + Missense_Mutation SNP G C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199041 exon10 c.C869G p.A290G . . . SEMA4B 10509 broad.mit.edu 36 15 88561830 88561830 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198925 exon2 c.T313A p.Y105N . . . GPR139 124274 broad.mit.edu 36 16 19950634 19950634 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001002911 exon2 c.C986T p.P329L . . . UBB 7314 broad.mit.edu 36 17 16226334 16226334 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018955 exon2 c.C388T p.R130C . . . SREBF1 6720 broad.mit.edu 36 17 17661048 17661048 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005291 exon10 c.C1824T p.P608P . . . CALCOCO2 10241 broad.mit.edu 36 17 44274163 44274163 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005831 exon2 c.A95G p.Y32C . . . TP53 7157 broad.mit.edu 36 17 7517747 7517747 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon8 c.C916T p.R306X TP53,large_intestine,rectum,Substitution - Nonsense,0 . . CBX4 8535 broad.mit.edu 36 17 75423481 75423481 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003655 exon5 c.C555T p.C185C . . . SYDE1 85360 broad.mit.edu 36 19 15082024 15082024 + Silent SNP C A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033025 exon3 c.C940A p.R314R . . . LRG1 116844 broad.mit.edu 36 19 4489669 4489669 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052972 exon2 c.C327T p.P109P . . . PSMC4 5704 broad.mit.edu 36 19 45172365 45172365 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153001 exon5 c.C471T p.F157F . . . CACNG7 59284 broad.mit.edu 36 19 59110440 59110440 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031896 exon3 c.G293A p.R98H . . . NLRP4 147945 broad.mit.edu 36 19 61061383 61061383 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_134444 exon3 c.C812T p.P271L . . . MUC16 94025 broad.mit.edu 36 19 8910680 8910680 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024690 exon5 c.G31951T p.A10651S . . . ZNF615 284370 broad.mit.edu 36 19 57188065 57188065 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198480 exon6 c.2076delA p.K692fs . . . VAV3 10451 broad.mit.edu 36 1 108095298 108095298 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006113 exon13 c.G1223A p.R408Q . . . CELSR2 1952 broad.mit.edu 36 1 109617678 109617678 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001408 exon33 c.C8607T p.S2869S . . . KCNA2 3737 broad.mit.edu 36 1 110948440 110948440 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004974 exon2 c.G488A p.R163K . . . KCNA3 3738 broad.mit.edu 36 1 111018313 111018313 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002232 exon1 c.C642T p.R214R . . . HSD3B1 3283 broad.mit.edu 36 1 119855721 119855721 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000862 exon3 c.G218T p.C73F . . . SELENBP1 8991 broad.mit.edu 36 1 149603730 149603730 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003944 exon12 c.G1332A p.V444V . . . HRNR 388697 broad.mit.edu 36 1 150459787 150459787 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001009931 exon3 c.C942T p.S314S . . . UBR4 23352 broad.mit.edu 36 1 19385687 19385687 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020765 exon14 c.G1684A p.A562T . . . CFHR5 81494 broad.mit.edu 36 1 195218799 195218799 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_030787 exon2 c.G220A p.E74K . . . ETNK2 55224 broad.mit.edu 36 1 202382476 202382476 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018208 exon3 c.C558T p.H186H . . . C4BPA 722 broad.mit.edu 36 1 205383820 205383820 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000715 exon11 c.G1479T p.R493S . . . AIDA 64853 broad.mit.edu 36 1 220913287 220913287 + Silent SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022831 exon8 c.T697C p.L233L . . . AGT 183 broad.mit.edu 36 1 228908325 228908325 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000029 exon3 c.C1101T p.N367N . . . MTR 4548 broad.mit.edu 36 1 235115122 235115122 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000254 exon26 c.G2755A p.D919N . . . NCDN 23154 broad.mit.edu 36 1 35800667 35800667 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001014841 exon4 c.C1180T p.R394C . . . COL24A1 255631 broad.mit.edu 36 1 86199531 86199531 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152890 exon24 c.2551delA p.I851fs . . . SYCP2 10388 broad.mit.edu 36 20 57922605 57922605 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014258 exon10 c.T731C p.F244S . . . SLC17A9 63910 broad.mit.edu 36 20 61067455 61067455 + Missense_Mutation SNP A T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_022082 exon10 c.A994T p.T332S . . . BRWD1 54014 broad.mit.edu 36 21 39532346 39532346 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033656 exon22 c.A2505C p.E835D . . . POTEF 728378 broad.mit.edu 36 2 130582101 130582101 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001099771 exon8 c.C1077A p.D359E . . . FAM123C 205147 broad.mit.edu 36 2 131238101 131238101 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105195 exon2 c.C1986T p.H662H . . . TTN 7273 broad.mit.edu 36 2 179290575 179290575 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_133378 exon84 c.A21539G p.Q7180R . . . ZNF385B 151126 broad.mit.edu 36 2 180056342 180056342 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001113397 exon4 c.C344T p.T115M . . . ALS2CR8 79800 broad.mit.edu 36 2 203534391 203534391 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001104586 exon8 c.G829A p.A277T . . . HADHB 3032 broad.mit.edu 36 2 26356428 26356428 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000183 exon10 c.C874G p.L292V . . . BFSP2 8419 broad.mit.edu 36 3 134650069 134650069 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003571 exon3 c.A619C p.N207H . . . TMEM43 79188 broad.mit.edu 36 3 14155742 14155742 + Missense_Mutation SNP G C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024334 exon11 c.G944C p.G315A . . . EIF4A2 1974 broad.mit.edu 36 3 187989624 187989624 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001967 exon11 c.C1096G p.R366G . . . COL25A1 84570 broad.mit.edu 36 4 109992883 109992883 + Silent SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198721 exon25 c.T1347C p.G449G . . . ALPK1 80216 broad.mit.edu 36 4 113573150 113573150 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_025144 exon11 c.G2998A p.G1000R . . . FAM114A1 92689 broad.mit.edu 36 4 38619020 38619020 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138389 exon14 c.A1573G p.S525G . . . STK32B 55351 broad.mit.edu 36 4 5520667 5520667 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018401 exon11 c.C1075T p.R359W . . . MAN2B2 23324 broad.mit.edu 36 4 6661750 6661750 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015274 exon12 c.G1830A p.T610T . . . SORCS2 57537 broad.mit.edu 36 4 7716985 7716985 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020777 exon7 c.C958T p.R320W . . . ADAMTS6 11174 broad.mit.edu 36 5 64547062 64547063 + Frame_Shift_Ins INS - T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_197941 exon19 c.2281_2282insA p.S761fs . . . APC 324 broad.mit.edu 36 5 112203070 112203070 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.C3826T p.Q1276X APC,large_intestine,right,Substitution - Nonsense,0 . . HSPA4 3308 broad.mit.edu 36 5 132440383 132440383 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002154 exon7 c.C802G p.Q268E . . . PCDHB2 56133 broad.mit.edu 36 5 140456184 140456184 + Silent SNP G A A rs17844656 unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018936 exon1 c.G1626A p.A542A . . . KIF4B 285643 broad.mit.edu 36 5 154376072 154376072 + Silent SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001099293 exon1 c.T2460C p.I820I . . . ZNF622 90441 broad.mit.edu 36 5 16516691 16516691 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033414 exon2 c.C786A p.S262R . . . NSUN2 54888 broad.mit.edu 36 5 6678682 6678682 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017755 exon4 c.G460A p.E154K . . . CMYA5 202333 broad.mit.edu 36 5 79061321 79061321 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153610 exon2 c.T977C p.I326T . . . NEDD9 4739 broad.mit.edu 36 6 11299359 11299359 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006403 exon5 c.C729T p.F243F . . . AKAP7 9465 broad.mit.edu 36 6 131522932 131522932 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016377 exon2 c.A126C p.E42D . . . SYNJ2 8871 broad.mit.edu 36 6 158415710 158415710 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003898 exon16 c.G2244A p.K748K . . . MICB 4277 broad.mit.edu 36 6 31582075 31582075 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005931 exon3 c.T502A p.F168I . . . IL17A 3605 broad.mit.edu 36 6 52160493 52160493 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002190 exon2 c.G161A p.R54Q . . . FAM135A 57579 broad.mit.edu 36 6 71269170 71269170 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001162529 exon10 c.C984G p.H328Q . . . SVOPL 136306 broad.mit.edu 36 7 137963456 137963456 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_174959 exon7 c.C600T p.I200I . . . POLR2K 5440 broad.mit.edu 36 8 101232808 101232808 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005034 exon2 c.T49C p.Y17H . . . COL22A1 169044 broad.mit.edu 36 8 139675590 139675590 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152888 exon63 c.G4467A p.P1489P . . . MYBL1 4603 broad.mit.edu 36 8 67655078 67655078 + Silent SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080416 exon9 c.C945T p.D315D . . . KCNB2 9312 broad.mit.edu 36 8 74011257 74011257 + Silent SNP A G G novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004770 exon3 c.A1113G p.S371S . . . RALYL 138046 broad.mit.edu 36 8 85924770 85924770 + Silent SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001100392 exon6 c.C366T p.G122G . . . LRRC8A 56262 broad.mit.edu 36 9 130718203 130718203 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019594 exon4 c.C2165T p.T722M . . . SETX 23064 broad.mit.edu 36 9 134194180 134194180 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015046 exon10 c.A2626G p.I876V . . . C9orf129 445577 broad.mit.edu 36 9 95121255 95121255 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001098808 exon4 c.C388T p.R130C . . . FAM47C 442444 broad.mit.edu 36 X 36937290 36937290 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A01Y-01A-41W-A096-10 TCGA-AG-A01Y-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001013736 exon1 c.C886T p.R296W . . .