Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target NET1 10276 broad.mit.edu 36 10 5488667 5488668 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005863 exon10 c.1339_1340insC p.A447fs . . . FAM178A 55719 broad.mit.edu 36 10 102666704 102666704 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018121 exon3 c.G572A p.G191D . . . FAM178A 55719 broad.mit.edu 36 10 102673854 102673854 + Missense_Mutation SNP A T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018121 exon5 c.A1106T p.H369L . . . SEMA4G 57715 broad.mit.edu 36 10 102729888 102729888 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017893 exon10 c.G1148A p.R383H . . . PDZD7 79955 broad.mit.edu 36 10 102772082 102772082 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195263 exon5 c.C593A p.P198H . . . LDB1 8861 broad.mit.edu 36 10 103859231 103859231 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113407 exon9 c.G756A p.M252I . . . COL17A1 1308 broad.mit.edu 36 10 105784071 105784071 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000494 exon52 c.C3778T p.R1260C . . . COL17A1 1308 broad.mit.edu 36 10 105789250 105789250 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000494 exon43 c.C2839A p.L947I . . . C10orf79 80217 broad.mit.edu 36 10 105893238 105893238 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025145 exon32 c.T4094G p.L1365W . . . ADRB1 153 broad.mit.edu 36 10 115794519 115794519 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000684 exon1 c.C638A p.P213H . . . VWA2 340706 broad.mit.edu 36 10 116035700 116035700 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198496 exon11 c.G1010T p.S337I . . . GFRA1 2674 broad.mit.edu 36 10 117815101 117815101 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145453 exon9 c.G1209A p.S403S . . . FAM45A 404636 broad.mit.edu 36 10 120867140 120867140 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207009 exon4 c.G452A p.R151Q . . . DHTKD1 55526 broad.mit.edu 36 10 12171137 12171137 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018706 exon5 c.G864A p.S288S . . . BTBD16 118663 broad.mit.edu 36 10 124084431 124084431 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144587 exon14 c.T1210C p.F404L . . . CPXM2 119587 broad.mit.edu 36 10 125591993 125591993 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198148 exon4 c.C515T p.A172V . . . MKI67 4288 broad.mit.edu 36 10 129794377 129794377 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.C4637T p.T1546M . . . MGMT 4255 broad.mit.edu 36 10 131224593 131224593 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002412 exon2 c.C180T p.H60H . . . GLRX3 10539 broad.mit.edu 36 10 131849248 131849248 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199868 exon4 c.T475C p.C159R . . . PPP2R2D 55844 broad.mit.edu 36 10 133607508 133607508 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018461 exon4 c.G426A p.T142T . . . JAKMIP3 282973 broad.mit.edu 36 10 133781048 133781048 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105521 exon2 c.G613A p.E205K . . . JAKMIP3 282973 broad.mit.edu 36 10 133796937 133796937 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105521 exon3 c.G765T p.E255D . . . LRRC27 80313 broad.mit.edu 36 10 134001121 134001121 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143758 exon3 c.G273A p.P91P . . . DCLRE1C 64421 broad.mit.edu 36 10 15004990 15004990 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033855 exon12 c.G1057A p.E353K . . . CUBN 8029 broad.mit.edu 36 10 17015168 17015168 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon40 c.C6048T p.T2016T . . . TRDMT1 1787 broad.mit.edu 36 10 17231109 17231109 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004412 exon11 c.G1112A p.R371H . . . NEBL 10529 broad.mit.edu 36 10 21164516 21164516 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006393 exon14 c.G1381T p.G461X . . . PTCHD3 374308 broad.mit.edu 36 10 27743124 27743124 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034842 exon1 c.C62T p.P21L . . . SVIL 6840 broad.mit.edu 36 10 29822307 29822307 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon19 c.G2583A p.T861T . . . KIAA1462 57608 broad.mit.edu 36 10 30358183 30358183 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.G900A p.S300S . . . PFKP 5214 broad.mit.edu 36 10 3145602 3145602 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002627 exon13 c.C1263T p.P421P . . . ZEB1 6935 broad.mit.edu 36 10 31855867 31855867 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174093 exon8 c.C2984T p.A995V . . . CCNY 219771 broad.mit.edu 36 10 35812407 35812407 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145012 exon2 c.C224T p.T75M . . . ZNF33A 7581 broad.mit.edu 36 10 38345883 38345883 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006954 exon3 c.G88A p.D30N . . . RASGEF1A 221002 broad.mit.edu 36 10 43015131 43015131 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145313 exon7 c.G848A p.R283Q . . . RBP3 5949 broad.mit.edu 36 10 48005879 48005879 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002900 exon2 c.C3219T p.H1073H . . . MAPK8 5599 broad.mit.edu 36 10 49279725 49279725 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002750 exon1 c.C16T p.R6C . . . ARHGAP22 58504 broad.mit.edu 36 10 49329116 49329116 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021226 exon9 c.G1062A p.P354P . . . ARID5B 84159 broad.mit.edu 36 10 63522167 63522167 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032199 exon10 c.A2939G p.H980R . . . EGR2 1959 broad.mit.edu 36 10 64243434 64243434 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000399 exon2 c.C970T p.R324C . . . CCAR1 55749 broad.mit.edu 36 10 70195685 70195685 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018237 exon17 c.G2141A p.R714H . . . DDX50 79009 broad.mit.edu 36 10 70376234 70376234 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024045 exon15 c.C2056T p.R686X . . . ADAMTS14 140766 broad.mit.edu 36 10 72187812 72187812 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080722 exon20 c.G3026T p.R1009M . . . ADAMTS14 140766 broad.mit.edu 36 10 72190421 72190421 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080722 exon22 c.C3478A p.P1160T . . . CDH23 64072 broad.mit.edu 36 10 73161949 73161949 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022124 exon31 c.C3915T p.N1305N . . . MYOZ1 58529 broad.mit.edu 36 10 75063760 75063760 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021245 exon5 c.C572A p.A191D . . . POLR3A 11128 broad.mit.edu 36 10 79411249 79411249 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007055 exon29 c.C3834T p.H1278H . . . TAF3 83860 broad.mit.edu 36 10 8046798 8046798 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031923 exon3 c.C1319T p.A440V . . . LRIT1 26103 broad.mit.edu 36 10 85982417 85982417 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015613 exon4 c.C1118T p.A373V . . . RGR 5995 broad.mit.edu 36 10 85998676 85998676 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012720 exon3 c.G255A p.S85S . . . FAM35A 54537 broad.mit.edu 36 10 88901810 88901810 + Missense_Mutation SNP C A A rs3129516 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019054 exon3 c.C719A p.T240K . . . CPEB3 22849 broad.mit.edu 36 10 93990085 93990085 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014912 exon2 c.G3A p.M1I . . . EXOC6 54536 broad.mit.edu 36 10 94665500 94665500 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013848 exon7 c.G654A p.Q218Q . . . SORBS1 10580 broad.mit.edu 36 10 97086441 97086441 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034954 exon28 c.G3466A p.V1156M . . . ADAM12 8038 broad.mit.edu 36 10 127714805 127714805 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003474 exon21 c.2438delA p.Q813fs . . . C10orf90 118611 broad.mit.edu 36 10 128183226 128183226 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004298 exon3 c.533delC p.P178fs . . . EBF3 253738 broad.mit.edu 36 10 131556115 131556115 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005463 exon9 c.806delG p.G269fs . . . ANKRD30A 91074 broad.mit.edu 36 10 37470730 37470730 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052997 exon7 c.731delA p.E244fs . . . KIF20B 9585 broad.mit.edu 36 10 91504301 91504301 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon26 c.4274delA p.E1425fs . . . INPPL1 3636 broad.mit.edu 36 11 71625856 71625857 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001567 exon26 c.2920_2921insC p.A974fs . . . BIRC3 330 broad.mit.edu 36 11 101711925 101711925 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182962 exon8 c.G1343A p.R448Q . . . BIRC3 330 broad.mit.edu 36 11 101712045 101712045 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182962 exon8 c.C1463T p.T488M . . . MMP7 4316 broad.mit.edu 36 11 101903801 101903801 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002423 exon2 c.G232A p.V78I . . . CUL5 8065 broad.mit.edu 36 11 107430851 107430851 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003478 exon7 c.C739T p.R247C . . . KDELC2 143888 broad.mit.edu 36 11 107867050 107867050 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153705 exon2 c.G257A p.R86Q . . . LAYN 143903 broad.mit.edu 36 11 110933493 110933493 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178834 exon6 c.G676A p.A226T . . . USP28 57646 broad.mit.edu 36 11 113184291 113184291 + Missense_Mutation SNP T C C rs36042945 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020886 exon18 c.A2243G p.Q748R . . . SIDT2 51092 broad.mit.edu 36 11 116563574 116563574 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040455 exon12 c.G1108A p.D370N . . . UBE4A 9354 broad.mit.edu 36 11 117757317 117757317 + Missense_Mutation SNP A T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004788 exon12 c.A1899T p.E633D . . . MLL 4297 broad.mit.edu 36 11 117878900 117878900 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon27 c.G7074A p.S2358S . . . BCL9L 283149 broad.mit.edu 36 11 118284521 118284521 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182557 exon2 c.G80A p.R27H . . . PDZD3 79849 broad.mit.edu 36 11 118564457 118564457 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168468 exon8 c.G1046A p.R349H . . . THY1 7070 broad.mit.edu 36 11 118796266 118796266 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006288 exon3 c.G78A p.T26T . . . PVRL1 5818 broad.mit.edu 36 11 119041178 119041178 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002855 exon6 c.G1043A p.R348H . . . C11orf63 79864 broad.mit.edu 36 11 122300885 122300885 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024806 exon4 c.T935A p.I312N . . . MUC5B 727897 broad.mit.edu 36 11 1230195 1230195 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002458 exon32 c.C14910T p.Y4970Y . . . SIAE 54414 broad.mit.edu 36 11 124022496 124022496 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170601 exon7 c.G941A p.R314H . . . SLC37A2 219855 broad.mit.edu 36 11 124457435 124457435 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145290 exon10 c.A971G p.N324S . . . SRPR 6734 broad.mit.edu 36 11 125642415 125642415 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177842 exon3 c.C307T p.R103C . . . ARHGAP32 9743 broad.mit.edu 36 11 128345679 128345679 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014715 exon13 c.C3550T p.R1184C . . . PRDM10 56980 broad.mit.edu 36 11 129292238 129292238 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020228 exon16 c.C2331T p.C777C . . . BTBD10 84280 broad.mit.edu 36 11 13423168 13423168 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032320 exon2 c.G80A p.R27H . . . MRGPRX2 117194 broad.mit.edu 36 11 19033551 19033551 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054030 exon2 c.G975A p.S325S . . . OSBPL5 114879 broad.mit.edu 36 11 3080067 3080067 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145638 exon11 c.C1143T p.N381N . . . PAX6 5080 broad.mit.edu 36 11 31779685 31779685 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127612 exon6 c.C357T p.S119S . . . WT1 7490 broad.mit.edu 36 11 32406732 32406732 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198551 exon2 c.C20T p.T7M . . . ZNF195 7748 broad.mit.edu 36 11 3337330 3337330 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007152 exon4 c.C1268T p.T423M . . . LDLRAD3 143458 broad.mit.edu 36 11 36014285 36014285 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174902 exon2 c.T103C p.F35L . . . PRR5L 79899 broad.mit.edu 36 11 36440627 36440627 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024841 exon10 c.C872T p.T291M . . . PGAP2 27315 broad.mit.edu 36 11 3801743 3801743 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014489 exon4 c.C403T p.R135C . . . LRRC4C 57689 broad.mit.edu 36 11 40092666 40092666 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.C1753A p.L585M . . . DGKZ 8525 broad.mit.edu 36 11 46349652 46349652 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003646 exon8 c.G682A p.E228K . . . MYBPC3 4607 broad.mit.edu 36 11 47329537 47329537 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000256 exon2 c.C121T p.R41C . . . OR51S1 119692 broad.mit.edu 36 11 4826704 4826704 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004758 exon1 c.C311T p.A104V . . . OR51G2 81282 broad.mit.edu 36 11 4892959 4892959 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005238 exon1 c.T511G p.F171V . . . UBQLN3 50613 broad.mit.edu 36 11 5487060 5487060 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017481 exon2 c.G305A p.C102Y . . . OR5M10 390167 broad.mit.edu 36 11 56101236 56101236 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004741 exon1 c.G538A p.A180T . . . OR6Q1 219952 broad.mit.edu 36 11 57555830 57555830 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005186 exon1 c.T830A p.V277E . . . MS4A14 84689 broad.mit.edu 36 11 59939505 59939505 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032597 exon5 c.C488T p.S163L . . . DDB1 1642 broad.mit.edu 36 11 60826738 60826738 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001923 exon24 c.G3004A p.E1002K . . . DAK 26007 broad.mit.edu 36 11 60868271 60868271 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015533 exon13 c.G1190A p.R397Q . . . CPSF7 79869 broad.mit.edu 36 11 60945479 60945479 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136040 exon3 c.C232T p.R78C . . . C11orf9 745 broad.mit.edu 36 11 61295650 61295650 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013279 exon6 c.C816T p.T272T . . . FADS3 3995 broad.mit.edu 36 11 61400220 61400220 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021727 exon10 c.G1099A p.V367M . . . INTS5 80789 broad.mit.edu 36 11 62171450 62171450 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030628 exon2 c.G2678A p.R893H . . . SLC22A6 9356 broad.mit.edu 36 11 62505079 62505079 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004790 exon6 c.C991T p.R331C . . . SLC22A10 387775 broad.mit.edu 36 11 62821732 62821732 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039752 exon4 c.G787A p.V263M . . . FLRT1 23769 broad.mit.edu 36 11 63640432 63640432 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013280 exon2 c.C117T p.Y39Y . . . ATG2A 23130 broad.mit.edu 36 11 64435189 64435189 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015104 exon10 c.T1363C p.F455L . . . FAM89B 23625 broad.mit.edu 36 11 65097561 65097561 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098785 exon2 c.C443T p.A148V . . . CNIH2 254263 broad.mit.edu 36 11 65806782 65806782 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182553 exon3 c.C153T p.R51R . . . NPAS4 266743 broad.mit.edu 36 11 65945339 65945339 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178864 exon1 c.C113T p.S38F . . . DCHS1 8642 broad.mit.edu 36 11 6601310 6601310 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003737 exon21 c.G8173A p.V2725M . . . BBS1 582 broad.mit.edu 36 11 66054946 66054946 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024649 exon15 c.G1479T p.Q493H . . . CTSF 8722 broad.mit.edu 36 11 66088674 66088674 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003793 exon11 c.C1252T p.R418C . . . SPTBN2 6712 broad.mit.edu 36 11 66215555 66215555 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006946 exon26 c.G5341A p.E1781K . . . SPTBN2 6712 broad.mit.edu 36 11 66223042 66223042 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006946 exon18 c.C3864T p.H1288H . . . PC 5091 broad.mit.edu 36 11 66373876 66373876 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040716 exon21 c.C2929T p.R977W . . . PC 5091 broad.mit.edu 36 11 66376826 66376826 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040716 exon14 c.C1571A p.P524H . . . PC 5091 broad.mit.edu 36 11 66395495 66395495 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040716 exon6 c.C354T p.Y118Y . . . ANKRD13D 338692 broad.mit.edu 36 11 66815688 66815688 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207354 exon5 c.C436T p.R146C . . . SSH3 54961 broad.mit.edu 36 11 66833551 66833551 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017857 exon11 c.C1169A p.P390Q . . . CHKA 1119 broad.mit.edu 36 11 67598865 67598865 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212469 exon3 c.G471T p.E157D . . . C11orf24 53838 broad.mit.edu 36 11 67786637 67786637 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022338 exon4 c.G402A p.T134T . . . LRP5 4041 broad.mit.edu 36 11 67947733 67947733 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002335 exon14 c.G3228A p.A1076A . . . OR10A2 341276 broad.mit.edu 36 11 6848194 6848194 + Silent SNP C T T rs61737577 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004460 exon1 c.C633T p.A211A . . . ORAOV1 220064 broad.mit.edu 36 11 69191528 69191528 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153451 exon5 c.G354A p.S118S . . . ANO1 55107 broad.mit.edu 36 11 69694792 69694792 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018043 exon22 c.C2349T p.I783I . . . IL18BP 10068 broad.mit.edu 36 11 71389934 71389934 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039660 exon4 c.T275C p.F92S . . . ARHGEF17 9828 broad.mit.edu 36 11 72750810 72750810 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014786 exon13 c.C4572T p.Y1524Y . . . C2CD3 26005 broad.mit.edu 36 11 73528345 73528345 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015531 exon4 c.T660C p.I220I . . . OMP 4975 broad.mit.edu 36 11 76491844 76491844 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006189 exon1 c.C311A p.A104D . . . MYO7A 4647 broad.mit.edu 36 11 76590209 76590209 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000260 exon36 c.G4921A p.E1641K . . . NARS2 79731 broad.mit.edu 36 11 77825494 77825494 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024678 exon14 c.G1304A p.R435H . . . NARS2 79731 broad.mit.edu 36 11 77881842 77881842 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024678 exon7 c.A737T p.N246I . . . SESN3 143686 broad.mit.edu 36 11 94558252 94558252 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144665 exon5 c.C578T p.A193V . . . VWA5A 4013 broad.mit.edu 36 11 123510904 123510904 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014622 exon11 c.1312delG p.G438fs . . . CCDC15 80071 broad.mit.edu 36 11 124350259 124350259 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025004 exon5 c.574delA p.K192fs . . . PKNOX2 63876 broad.mit.edu 36 11 124743004 124743004 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022062 exon5 c.140delC p.A47fs . . . SPI1 6688 broad.mit.edu 36 11 47338013 47338013 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003120 exon3 c.297delC p.P99fs . . . DNHD1 144132 broad.mit.edu 36 11 6548067 6548067 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144666 exon41 c.12970delG p.G4324fs . . . CREBZF 58487 broad.mit.edu 36 11 85052890 85052892 + In_Frame_Del DEL CTT - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CTT CTT CTT - CTT CTT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039618 exon1 c.676_678del p.226_226del . . . FAR1 84188 broad.mit.edu 36 11 13689933 13689933 + Splice_Site SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . APAF1 317 broad.mit.edu 36 12 97588996 97588997 + Splice_Site INS - TA TA novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . STAB2 55576 broad.mit.edu 36 12 102607862 102607862 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon29 c.T3154A p.S1052T . . . RFX4 5992 broad.mit.edu 36 12 105519236 105519236 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002920 exon1 c.C52T p.R18X . . . CRY1 1407 broad.mit.edu 36 12 106010785 106010785 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004075 exon1 c.G85A p.D29N . . . WSCD2 9671 broad.mit.edu 36 12 107128097 107128097 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014653 exon4 c.C567T p.N189N . . . SSH1 54434 broad.mit.edu 36 12 107706387 107706387 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018984 exon15 c.G2656A p.A886T . . . DAO 1610 broad.mit.edu 36 12 107817325 107817325 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001917 exon10 c.G857A p.R286H . . . FOXN4 121643 broad.mit.edu 36 12 108203879 108203879 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213596 exon9 c.C1010T p.A337V . . . IFT81 28981 broad.mit.edu 36 12 109085123 109085123 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143779 exon11 c.G1058A p.R353H . . . HVCN1 84329 broad.mit.edu 36 12 109577484 109577484 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032369 exon5 c.C349T p.L117F . . . TAS2R14 50840 broad.mit.edu 36 12 10982764 10982764 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023922 exon1 c.G310A p.G104S . . . NOS1 4842 broad.mit.edu 36 12 116200261 116200261 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000620 exon9 c.C1550T p.P517L . . . NOS1 4842 broad.mit.edu 36 12 116208338 116208338 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000620 exon6 c.G1244A p.R415Q . . . CIT 11113 broad.mit.edu 36 12 118634797 118634797 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon35 c.G4540A p.A1514T . . . CIT 11113 broad.mit.edu 36 12 118656397 118656397 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon25 c.G3179A p.R1060Q . . . SNRNP35 11066 broad.mit.edu 36 12 122516452 122516452 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022717 exon2 c.C412T p.R138W . . . TMED2 10959 broad.mit.edu 36 12 122635267 122635267 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006815 exon1 c.G131A p.G44D . . . DDX55 57696 broad.mit.edu 36 12 122659265 122659265 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020936 exon6 c.C487T p.R163X . . . NCOR2 9612 broad.mit.edu 36 12 123406021 123406021 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006312 exon26 c.G3312A p.P1104P . . . NCOR2 9612 broad.mit.edu 36 12 123453046 123453046 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006312 exon16 c.G1497A p.Q499Q . . . AACS 65985 broad.mit.edu 36 12 124187262 124187262 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023928 exon17 c.G1780A p.A594T . . . TMEM132D 121256 broad.mit.edu 36 12 128750800 128750800 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon2 c.G476A p.R159H . . . PGAM5 192111 broad.mit.edu 36 12 131801612 131801612 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170544 exon2 c.C287A p.A96D . . . STRAP 11171 broad.mit.edu 36 12 15934841 15934841 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007178 exon4 c.G374A p.R125H . . . ABCC9 10060 broad.mit.edu 36 12 21886528 21886528 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020297 exon27 c.C3460T p.R1154W . . . KRAS 3845 broad.mit.edu 36 12 25269829 25269829 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004985 exon4 c.G436A p.A146T KRAS,large_intestine,NS,Substitution - Missense,0 . . TULP3 7289 broad.mit.edu 36 12 2910529 2910529 + De_novo_Start_InFrame SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160408 exon6 c.C558T p.D186D . . . DDX11 1663 broad.mit.edu 36 12 31134273 31134273 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004399 exon9 c.G1067A p.R356H . . . PKP2 5318 broad.mit.edu 36 12 32895023 32895023 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004572 exon5 c.G1322A p.R441Q . . . PRMT8 56341 broad.mit.edu 36 12 3562572 3562572 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019854 exon8 c.G916A p.A306T . . . LRRK2 120892 broad.mit.edu 36 12 38994152 38994152 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198578 exon32 c.C4648T p.R1550W LRRK2,ovary,NS,Substitution - Missense,-1 . . FAM113B 91523 broad.mit.edu 36 12 45916039 45916039 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138371 exon2 c.G926A p.R309H . . . OR8S1 341568 broad.mit.edu 36 12 47208060 47208060 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005203 exon2 c.C987T p.P329P . . . FKBP11 51303 broad.mit.edu 36 12 47602125 47602125 + Missense_Mutation SNP A T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016594 exon6 c.T515A p.I172N . . . PRPH 5630 broad.mit.edu 36 12 47976284 47976284 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006262 exon2 c.G602A p.R201H . . . PRPF40B 25766 broad.mit.edu 36 12 48315231 48315231 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031698 exon12 c.C1018T p.R340W . . . FMNL3 91010 broad.mit.edu 36 12 48330841 48330841 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175736 exon17 c.G1885A p.A629T . . . KRT74 121391 broad.mit.edu 36 12 51252715 51252715 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175053 exon2 c.C475T p.R159C . . . CBX5 23468 broad.mit.edu 36 12 52937617 52937617 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127322 exon2 c.C85T p.R29C . . . OR10P1 121130 broad.mit.edu 36 12 54317834 54317834 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206899 exon1 c.G892A p.V298M . . . ERBB3 2065 broad.mit.edu 36 12 54765121 54765121 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005915 exon3 c.G310A p.V104M ERBB3,ovary,NS,Substitution - Missense,0 . . INHBE 83729 broad.mit.edu 36 12 56136855 56136855 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031479 exon2 c.C1010T p.T337M . . . ARHGAP9 64333 broad.mit.edu 36 12 56155959 56155959 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080156 exon8 c.A683C p.E228A . . . ARHGEF25 115557 broad.mit.edu 36 12 56296066 56296066 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111270 exon14 c.C1536T p.N512N . . . B4GALNT1 2583 broad.mit.edu 36 12 56309194 56309194 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001478 exon7 c.C715T p.R239W . . . AGAP2 116986 broad.mit.edu 36 12 56407462 56407462 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014770 exon16 c.G1960A p.V654M . . . CDK4 1019 broad.mit.edu 36 12 56429288 56429288 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000075 exon7 c.C763T p.R255C . . . VWF 7450 broad.mit.edu 36 12 5973334 5973334 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000552 exon37 c.C6553T p.R2185W . . . MON2 23041 broad.mit.edu 36 12 61174025 61174025 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015026 exon3 c.C239T p.P80L . . . GNS 2799 broad.mit.edu 36 12 63401702 63401702 + Silent SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002076 exon12 c.C1359A p.A453A . . . CHD4 1108 broad.mit.edu 36 12 6566874 6566874 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon25 c.C3816T p.G1272G . . . MLF2 8079 broad.mit.edu 36 12 6728331 6728331 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005439 exon8 c.G638A p.R213Q . . . ZFC3H1 196441 broad.mit.edu 36 12 70294745 70294745 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144982 exon30 c.A5363G p.Y1788C . . . C1S 716 broad.mit.edu 36 12 7044654 7044654 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201442 exon9 c.G1038T p.K346N . . . CD163L1 283316 broad.mit.edu 36 12 7418575 7418575 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174941 exon13 c.G3139T p.G1047W . . . NAV3 89795 broad.mit.edu 36 12 77034689 77034689 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon13 c.T2643C p.D881D . . . SLC2A14 144195 broad.mit.edu 36 12 7861711 7861711 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153449 exon11 c.C1327T p.L443F . . . MYF5 4617 broad.mit.edu 36 12 79635251 79635251 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005593 exon1 c.G278A p.R93Q . . . FOXJ2 55810 broad.mit.edu 36 12 8092017 8092017 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018416 exon7 c.G1090A p.A364T . . . C3AR1 719 broad.mit.edu 36 12 8103071 8103071 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004054 exon2 c.C978T p.D326D . . . NTN4 59277 broad.mit.edu 36 12 94583839 94583839 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021229 exon9 c.A1628G p.E543G . . . HAL 3034 broad.mit.edu 36 12 94895869 94895869 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002108 exon18 c.C1638T p.I546I . . . TAS2R50 259296 broad.mit.edu 36 12 11030699 11030699 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_176890 exon1 c.28delT p.S10fs . . . LHX5 64211 broad.mit.edu 36 12 112385528 112385528 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022363 exon5 c.1059delC p.P353fs . . . MLL2 8085 broad.mit.edu 36 12 47720759 47720759 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon31 c.7061delC p.P2354fs . . . NALCN 259232 broad.mit.edu 36 13 100534094 100534094 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon31 c.C3552T p.I1184I . . . ITGBL1 9358 broad.mit.edu 36 13 101164834 101164834 + Missense_Mutation SNP A T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004791 exon10 c.A1325T p.Y442F . . . FAM155A 728215 broad.mit.edu 36 13 106661001 106661001 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080396 exon2 c.G1019T p.R340M . . . ANKRD10 55608 broad.mit.edu 36 13 110365096 110365096 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017664 exon1 c.C187T p.H63Y . . . PROZ 8858 broad.mit.edu 36 13 112874164 112874164 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003891 exon8 c.C947T p.T316M . . . FAM123A 219287 broad.mit.edu 36 13 24642736 24642736 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152704 exon1 c.G1022A p.R341Q . . . WASF3 10810 broad.mit.edu 36 13 26153349 26153349 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006646 exon8 c.C875T p.S292L . . . PAN3 255967 broad.mit.edu 36 13 27728471 27728471 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175854 exon7 c.A1043G p.K348R . . . USPL1 10208 broad.mit.edu 36 13 30130744 30130744 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005800 exon9 c.G2530A p.A844T . . . DCLK1 9201 broad.mit.edu 36 13 35584075 35584075 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004734 exon3 c.C654T p.T218T . . . SOHLH2 54937 broad.mit.edu 36 13 35646974 35646974 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017826 exon7 c.G674A p.R225H . . . SPERT 220082 broad.mit.edu 36 13 45185515 45185515 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152719 exon3 c.G354A p.P118P . . . ZC3H13 23091 broad.mit.edu 36 13 45457478 45457478 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015070 exon10 c.C1675T p.R559X . . . SETDB2 83852 broad.mit.edu 36 13 48953136 48953136 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160308 exon7 c.C1039T p.R347X . . . PCDH20 64881 broad.mit.edu 36 13 60885547 60885547 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022843 exon2 c.C686T p.A229V . . . PCDH9 5101 broad.mit.edu 36 13 66698907 66698907 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020403 exon2 c.C1667T p.A556V . . . DIS3 22894 broad.mit.edu 36 13 72233612 72233612 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128226 exon19 c.T2470C p.F824L . . . DZIP1 22873 broad.mit.edu 36 13 95037831 95037831 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon19 c.C2124T p.S708S . . . RNF113B 140432 broad.mit.edu 36 13 97626977 97626977 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178861 exon1 c.C515T p.A172V . . . COL4A2 1284 broad.mit.edu 36 13 109923482 109923482 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001846 exon29 c.2409delC p.G803fs . . . UTP14C 9724 broad.mit.edu 36 13 51491174 51491174 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004127 exon2 c.169delA p.K57fs . . . TECPR2 9895 broad.mit.edu 36 14 101961140 101961140 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014844 exon6 c.G710A p.R237Q . . . AHNAK2 113146 broad.mit.edu 36 14 104476289 104476289 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.C16544T p.S5515L . . . ARHGEF40 55701 broad.mit.edu 36 14 20618890 20618890 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018071 exon13 c.C2515T p.R839W . . . LRP10 26020 broad.mit.edu 36 14 22416501 22416501 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014045 exon7 c.C2067T p.D689D . . . MYH6 4624 broad.mit.edu 36 14 22921537 22921537 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002471 exon38 c.G5736A p.A1912A . . . MYH6 4624 broad.mit.edu 36 14 22925045 22925045 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002471 exon34 c.C5095T p.R1699W . . . MYH7 4625 broad.mit.edu 36 14 22955955 22955955 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon33 c.G4606A p.E1536K . . . LRRC16B 90668 broad.mit.edu 36 14 23598379 23598379 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138360 exon21 c.A1687G p.N563D . . . AKAP6 9472 broad.mit.edu 36 14 32217343 32217343 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004274 exon8 c.C2806T p.Q936X . . . SRP54 6729 broad.mit.edu 36 14 34561940 34561940 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003136 exon14 c.G1230A p.S410S . . . TRIM9 114088 broad.mit.edu 36 14 50630756 50630756 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052978 exon1 c.A652C p.S218R . . . SAMD4A 23034 broad.mit.edu 36 14 54321078 54321078 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015589 exon11 c.C2115T p.H705H . . . SYNE2 23224 broad.mit.edu 36 14 63674287 63674287 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon79 c.C14676T p.H4892H . . . PLEKHG3 26030 broad.mit.edu 36 14 64277946 64277946 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015549 exon14 c.G1790A p.R597Q . . . SPTB 6710 broad.mit.edu 36 14 64285884 64285884 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024858 exon35 c.C6880T p.R2294C . . . ACTN1 87 broad.mit.edu 36 14 68426624 68426624 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130005 exon11 c.G1219A p.E407K . . . SLC8A3 6547 broad.mit.edu 36 14 69703497 69703497 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033262 exon2 c.G1396A p.V466M . . . NUMB 8650 broad.mit.edu 36 14 72823749 72823749 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005744 exon9 c.C477T p.G159G . . . PGF 5228 broad.mit.edu 36 14 74485970 74485970 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002632 exon3 c.G158A p.R53Q . . . ZC3H14 79882 broad.mit.edu 36 14 88110899 88110899 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160104 exon7 c.G971A p.R324Q . . . ASB2 51676 broad.mit.edu 36 14 93490576 93490576 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016150 exon2 c.G174A p.A58A . . . PPP4R4 57718 broad.mit.edu 36 14 93782575 93782575 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058237 exon14 c.C1557T p.S519S . . . SERPINA12 145264 broad.mit.edu 36 14 94034008 94034008 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173850 exon3 c.C480T p.A160A . . . KIF26A 26153 broad.mit.edu 36 14 103703079 103703079 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015656 exon5 c.1054delC p.P352fs . . . INF2 64423 broad.mit.edu 36 14 104240790 104240790 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032714 exon4 c.621delC p.G207fs . . . BRF1 2972 broad.mit.edu 36 14 104764055 104764055 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145685 exon4 c.264delC p.P88fs . . . SIP1 8487 broad.mit.edu 36 14 38653393 38653393 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001009183 exon1 c.133delC p.P45fs . . . ARID4A 5926 broad.mit.edu 36 14 57902651 57902651 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002892 exon22 c.3473delA p.E1158fs . . . GABRB3 2562 broad.mit.edu 36 15 24363883 24363883 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021912 exon7 c.C773T p.T258M . . . MTMR10 54893 broad.mit.edu 36 15 29021065 29021065 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017762 exon16 c.G2234A p.G745E . . . TRPM1 4308 broad.mit.edu 36 15 29117540 29117540 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon18 c.C2372T p.T791M . . . RYR3 6263 broad.mit.edu 36 15 31723895 31723895 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon28 c.C3648T p.C1216C . . . PGBD4 161779 broad.mit.edu 36 15 32182044 32182044 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152595 exon1 c.G20A p.R7H . . . BAHD1 22893 broad.mit.edu 36 15 38538632 38538632 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014952 exon2 c.C677A p.P226H . . . DLL4 54567 broad.mit.edu 36 15 39016347 39016347 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019074 exon9 c.C1870T p.R624W . . . SPTBN5 51332 broad.mit.edu 36 15 39934370 39934370 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016642 exon56 c.C9415T p.R3139W . . . CAPN3 825 broad.mit.edu 36 15 40476329 40476329 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212465 exon13 c.C894T p.A298A . . . ELL3 80237 broad.mit.edu 36 15 41855573 41855573 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025165 exon3 c.G237T p.E79D . . . DTWD1 56986 broad.mit.edu 36 15 47704810 47704810 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144955 exon2 c.C154T p.Q52X . . . ATP8B4 79895 broad.mit.edu 36 15 48059184 48059184 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024837 exon12 c.C956T p.S319F . . . HDC 3067 broad.mit.edu 36 15 48322493 48322493 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002112 exon12 c.T1245C p.G415G . . . DMXL2 23312 broad.mit.edu 36 15 49582303 49582303 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015263 exon17 c.C2984A p.P995H . . . UNC13C 440279 broad.mit.edu 36 15 52093730 52093730 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon1 c.G1338A p.W446X . . . TCF12 6938 broad.mit.edu 36 15 55352611 55352611 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207037 exon19 c.C1837T p.R613C . . . GCOM1 145781 broad.mit.edu 36 15 55701129 55701129 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152451 exon4 c.G350A p.R117Q . . . GCNT3 9245 broad.mit.edu 36 15 57698237 57698237 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004751 exon3 c.G508T p.E170X . . . VPS13C 54832 broad.mit.edu 36 15 59942967 59942967 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017684 exon80 c.C10787A p.P3596H . . . SNX1 6642 broad.mit.edu 36 15 62197371 62197371 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003099 exon3 c.G274A p.A92T . . . SPG21 51324 broad.mit.edu 36 15 63048670 63048670 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127889 exon7 c.G644A p.R215Q . . . DPP8 54878 broad.mit.edu 36 15 63558298 63558298 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017743 exon11 c.C1429T p.R477X . . . C15orf44 81556 broad.mit.edu 36 15 63686694 63686694 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030800 exon2 c.G78A p.Q26Q . . . KIF23 9493 broad.mit.edu 36 15 67505744 67505744 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004856 exon9 c.G863A p.R288H . . . THSD4 79875 broad.mit.edu 36 15 69856705 69856705 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024817 exon17 c.G2995A p.A999T . . . NR2E3 10002 broad.mit.edu 36 15 69891363 69891363 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014249 exon4 c.C364T p.R122C . . . HCN4 10021 broad.mit.edu 36 15 71409109 71409109 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005477 exon4 c.G1448A p.R483Q . . . ISLR2 57611 broad.mit.edu 36 15 72214189 72214189 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020851 exon3 c.G2041A p.A681T . . . CYP1A1 1543 broad.mit.edu 36 15 72801753 72801753 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000499 exon2 c.T739C p.S247P . . . SIN3A 25942 broad.mit.edu 36 15 73489272 73489272 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145358 exon8 c.C1275T p.C425C . . . FAH 2184 broad.mit.edu 36 15 78260460 78260460 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000137 exon13 c.A1084G p.M362V . . . BTBD1 53339 broad.mit.edu 36 15 81501514 81501514 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025238 exon4 c.C832T p.P278S . . . AGBL1 123624 broad.mit.edu 36 15 84741649 84741649 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152336 exon17 c.G2285A p.S762N . . . RLBP1 6017 broad.mit.edu 36 15 87561486 87561486 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000326 exon5 c.C215T p.A72V . . . RHCG 51458 broad.mit.edu 36 15 87822162 87822162 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016321 exon6 c.C885T p.T295T . . . ZNF710 374655 broad.mit.edu 36 15 88412714 88412714 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198526 exon2 c.C1341T p.R447R . . . IGF1R 3480 broad.mit.edu 36 15 97277493 97277493 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000875 exon10 c.C2066T p.T689I . . . LRRC28 123355 broad.mit.edu 36 15 97645635 97645635 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144598 exon5 c.G341A p.R114H . . . LRRK1 79705 broad.mit.edu 36 15 99414741 99414741 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024652 exon28 c.C4490T p.A1497V . . . B2M 567 broad.mit.edu 36 15 42791073 42791074 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CT CT CT - CT CT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004048 exon1 c.37_38del p.13_13del . . . B2M 567 broad.mit.edu 36 15 42795045 42795045 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004048 exon2 c.200delA p.E67fs . . . DUOX1 53905 broad.mit.edu 36 15 43220792 43220794 + In_Frame_Del DEL AAG - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 AAG AAG AAG - AAG AAG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017434 exon15 c.1576_1578del p.526_526del . . . NGRN 51335 broad.mit.edu 36 15 88610022 88610022 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033088 exon1 c.74delG p.R25fs . . . UNKL 64718 broad.mit.edu 36 16 1393206 1393206 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037125 exon3 c.G428A p.G143D . . . CLCN7 1186 broad.mit.edu 36 16 1445229 1445229 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114331 exon11 c.G933A p.T311T . . . IFT140 9742 broad.mit.edu 36 16 1508242 1508242 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014714 exon30 c.C4158T p.Y1386Y . . . IFT140 9742 broad.mit.edu 36 16 1513849 1513849 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014714 exon25 c.C3251T p.A1084V . . . ABCC6 368 broad.mit.edu 36 16 16156316 16156316 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171 exon28 c.C3956T p.A1319V . . . ABCC6 368 broad.mit.edu 36 16 16199467 16199467 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171 exon10 c.T1250C p.V417A . . . MAPK8IP3 23162 broad.mit.edu 36 16 1752464 1752464 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040439 exon13 c.C1630T p.R544W . . . SMG1 23049 broad.mit.edu 36 16 18777033 18777033 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015092 exon29 c.G4194A p.R1398R . . . GPRC5B 51704 broad.mit.edu 36 16 19780772 19780772 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016235 exon3 c.A1055G p.N352S . . . TSC2 7249 broad.mit.edu 36 16 2040433 2040433 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114382 exon3 c.G170A p.R57H . . . OTOA 146183 broad.mit.edu 36 16 21645383 21645383 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144672 exon18 c.T1919C p.V640A . . . VWA3A 146177 broad.mit.edu 36 16 22071339 22071339 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173615 exon31 c.G3288A p.A1096A . . . POLR3E 55718 broad.mit.edu 36 16 22244651 22244651 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018119 exon18 c.G1417A p.A473T . . . ABCA3 21 broad.mit.edu 36 16 2287506 2287506 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001089 exon17 c.C2088T p.D696D . . . USP31 57478 broad.mit.edu 36 16 22992671 22992671 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020718 exon14 c.G2208A p.W736X . . . IL21R 50615 broad.mit.edu 36 16 27367566 27367566 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181079 exon10 c.G1144A p.G382S . . . KIAA0556 23247 broad.mit.edu 36 16 27627670 27627670 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015202 exon13 c.G1533A p.S511S . . . XPO6 23214 broad.mit.edu 36 16 28017420 28017420 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015171 exon24 c.C3318T p.N1106N . . . LAT 27040 broad.mit.edu 36 16 28905250 28905250 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014989 exon6 c.C400T p.R134W . . . SEZ6L2 26470 broad.mit.edu 36 16 29804510 29804510 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114100 exon6 c.G928A p.D310N . . . TAOK2 9344 broad.mit.edu 36 16 29900516 29900516 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004783 exon9 c.C689T p.A230V . . . ZNF768 79724 broad.mit.edu 36 16 30444660 30444660 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024671 exon2 c.C302T p.A101V . . . ZNF668 79759 broad.mit.edu 36 16 30980820 30980820 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172669 exon4 c.C999T p.C333C . . . BCKDK 10295 broad.mit.edu 36 16 31028388 31028388 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122957 exon3 c.G251A p.G84D . . . PRSS36 146547 broad.mit.edu 36 16 31059148 31059148 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173502 exon14 c.C2257T p.L753L . . . ITGAM 3684 broad.mit.edu 36 16 31216410 31216410 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000632 exon13 c.C1431T p.I477I . . . TMEM8A 58986 broad.mit.edu 36 16 366266 366266 + Silent SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021259 exon6 c.G1095T p.S365S . . . CREBBP 1387 broad.mit.edu 36 16 3718019 3718019 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon31 c.C7030T p.R2344W . . . CREBBP 1387 broad.mit.edu 36 16 3760704 3760704 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon14 c.T2748C p.P916P . . . CREBBP 1387 broad.mit.edu 36 16 3768112 3768112 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon10 c.C2014T p.R672C . . . DNAJA3 9093 broad.mit.edu 36 16 4432300 4432300 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135110 exon5 c.G661A p.A221T . . . ITFG1 81533 broad.mit.edu 36 16 45753968 45753968 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030790 exon15 c.G1562A p.R521H . . . ZNF423 23090 broad.mit.edu 36 16 48228653 48228653 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015069 exon5 c.C1911T p.C637C . . . IRX6 79190 broad.mit.edu 36 16 53920318 53920318 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024335 exon5 c.C927T p.C309C . . . CES5A 221223 broad.mit.edu 36 16 54441181 54441181 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143685 exon11 c.G1279A p.G427S . . . CETP 1071 broad.mit.edu 36 16 55560881 55560881 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000078 exon3 c.G316A p.V106M . . . GPR114 221188 broad.mit.edu 36 16 56159416 56159416 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153837 exon9 c.C969T p.Y323Y . . . GOT2 2806 broad.mit.edu 36 16 57309652 57309652 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002080 exon6 c.G651A p.T217T . . . KCTD19 146212 broad.mit.edu 36 16 65890810 65890810 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100915 exon6 c.C943T p.R315X . . . PARD6A 50855 broad.mit.edu 36 16 66253551 66253551 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037281 exon3 c.G538A p.V180M . . . EDC4 23644 broad.mit.edu 36 16 66468702 66468702 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014329 exon5 c.G533A p.S178N . . . ESRP2 80004 broad.mit.edu 36 16 66823250 66823250 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024939 exon10 c.C1255T p.R419X . . . HAS3 3038 broad.mit.edu 36 16 67709820 67709820 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138612 exon4 c.C800T p.T267M . . . PDPR 55066 broad.mit.edu 36 16 68720188 68720188 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017990 exon5 c.G362A p.G121D . . . FUK 197258 broad.mit.edu 36 16 69070618 69070618 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145059 exon23 c.G2964A p.S988S . . . CALB2 794 broad.mit.edu 36 16 69981225 69981225 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001740 exon11 c.C772T p.R258C . . . ZNF23 7571 broad.mit.edu 36 16 70040122 70040122 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145911 exon6 c.G1307A p.R436Q . . . MARVELD3 91862 broad.mit.edu 36 16 70232384 70232384 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017967 exon3 c.G1186A p.G396R . . . HPR 3250 broad.mit.edu 36 16 70667766 70667766 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020995 exon5 c.C332T p.A111V . . . DHX38 9785 broad.mit.edu 36 16 70695015 70695015 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014003 exon13 c.G1651A p.V551M . . . DHX38 9785 broad.mit.edu 36 16 70695942 70695942 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014003 exon15 c.G2067A p.A689A . . . ZFHX3 463 broad.mit.edu 36 16 71551087 71551087 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon2 c.C459T p.G153G . . . ADAMTS18 170692 broad.mit.edu 36 16 75958881 75958881 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon4 c.C736T p.R246X . . . CLEC3A 10143 broad.mit.edu 36 16 76622013 76622013 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005752 exon3 c.C368T p.P123L . . . WWOX 51741 broad.mit.edu 36 16 76706517 76706517 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130791 exon4 c.A374G p.K125R . . . WWOX 51741 broad.mit.edu 36 16 76978308 76978308 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016373 exon6 c.C567T p.S189S . . . CMIP 80790 broad.mit.edu 36 16 80261267 80261267 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030629 exon8 c.G563A p.R188Q . . . MBTPS1 8720 broad.mit.edu 36 16 82682850 82682850 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003791 exon7 c.G951A p.P317P . . . KCNG4 93107 broad.mit.edu 36 16 82813957 82813957 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172347 exon3 c.G927A p.S309S . . . KIAA1609 57707 broad.mit.edu 36 16 83086937 83086937 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020947 exon3 c.G237A p.A79A . . . ZCCHC14 23174 broad.mit.edu 36 16 86002773 86002773 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015144 exon12 c.A2644T p.T882S . . . ZC3H18 124245 broad.mit.edu 36 16 87217903 87217903 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon11 c.A1830G p.P610P . . . ANKRD11 29123 broad.mit.edu 36 16 87874988 87874988 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.C5463T p.Y1821Y . . . DBNDD1 79007 broad.mit.edu 36 16 88603316 88603316 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024043 exon2 c.C115T p.P39S . . . COG7 91949 broad.mit.edu 36 16 23343715 23343715 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153603 exon7 c.865delG p.A289fs . . . AQP8 343 broad.mit.edu 36 16 25140376 25140376 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001169 exon3 c.358delG p.G120fs . . . SLC5A2 6524 broad.mit.edu 36 16 31403649 31403652 + Frame_Shift_Del DEL CTCT - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CTCT CTCT CTCT - CTCT CTCT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003041 exon3 c.207_210del p.69_70del . . . IRX3 79191 broad.mit.edu 36 16 52876588 52876588 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024336 exon2 c.706delG p.E236fs . . . ZNF469 84627 broad.mit.edu 36 16 87022007 87022007 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127464 exon1 c.628delC p.P210fs . . . ZC3H18 124245 broad.mit.edu 36 16 87221960 87221960 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon15 c.2401delC p.P801fs . . . TUSC5 286753 broad.mit.edu 36 17 1145649 1145649 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172367 exon2 c.G502A p.V168M . . . YWHAE 7531 broad.mit.edu 36 17 1211216 1211216 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006761 exon4 c.G498A p.T166T . . . ARHGAP44 9912 broad.mit.edu 36 17 12828694 12828694 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014859 exon20 c.G2061A p.P687P . . . RPH3AL 9501 broad.mit.edu 36 17 169336 169336 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190413 exon4 c.C226T p.L76L . . . COPS3 8533 broad.mit.edu 36 17 17106122 17106122 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003653 exon7 c.G645A p.A215A . . . MYO15A 51168 broad.mit.edu 36 17 18022840 18022840 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon65 c.C10524T p.H3508H . . . PRPSAP2 5636 broad.mit.edu 36 17 18711321 18711321 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002767 exon4 c.C121T p.R41W . . . EPN2 22905 broad.mit.edu 36 17 19172655 19172655 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014964 exon8 c.C1186T p.P396S . . . MNT 4335 broad.mit.edu 36 17 2237016 2237016 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020310 exon6 c.C1678T p.Q560X . . . METT10D 79066 broad.mit.edu 36 17 2270875 2270875 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon9 c.T962C p.M321T . . . METT10D 79066 broad.mit.edu 36 17 2327910 2327910 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon3 c.G148A p.E50K . . . VTN 7448 broad.mit.edu 36 17 23719021 23719021 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000638 exon7 c.G1166A p.R389H . . . PROCA1 147011 broad.mit.edu 36 17 24054974 24054974 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152465 exon4 c.C740A p.P247H . . . NEK8 284086 broad.mit.edu 36 17 24086090 24086090 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178170 exon3 c.G427A p.V143I . . . C17orf63 55731 broad.mit.edu 36 17 24109601 24109601 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077498 exon3 c.C1502T p.A501V . . . C17orf97 400566 broad.mit.edu 36 17 263462 263462 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013672 exon2 c.G512A p.R171H . . . LRRC37B 114659 broad.mit.edu 36 17 27372762 27372762 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052888 exon1 c.C484T p.R162W . . . RFFL 117584 broad.mit.edu 36 17 30377684 30377684 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017368 exon2 c.T2C p.M1T . . . NLE1 54475 broad.mit.edu 36 17 30484479 30484479 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014445 exon10 c.G490A p.A164T . . . ACACA 31 broad.mit.edu 36 17 32683955 32683955 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon15 c.G1947A p.W649X . . . SRCIN1 80725 broad.mit.edu 36 17 33961803 33961803 + Missense_Mutation SNP C T T rs7222929 byCluster;byFrequency;byHapMap TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025248 exon14 c.G2572A p.V858M . . . FBXO47 494188 broad.mit.edu 36 17 34371682 34371682 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008777 exon3 c.C326T p.A109V . . . CDK12 51755 broad.mit.edu 36 17 34927293 34927293 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016507 exon10 c.C2921T p.P974L . . . KRT26 353288 broad.mit.edu 36 17 36176341 36176341 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181539 exon8 c.A1359G p.K453K . . . KRTAP3-2 83897 broad.mit.edu 36 17 36409611 36409611 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031959 exon1 c.C21T p.R7R . . . KRT38 8687 broad.mit.edu 36 17 36850332 36850332 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006771 exon1 c.G368A p.R123H . . . KRT19 3880 broad.mit.edu 36 17 36934729 36934729 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002276 exon3 c.C552T p.N184N . . . NT5C3L 115024 broad.mit.edu 36 17 37237329 37237329 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052935 exon8 c.T643C p.Y215H . . . CNTNAP1 8506 broad.mit.edu 36 17 38097045 38097045 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003632 exon15 c.C2334T p.C778C . . . ZZEF1 23140 broad.mit.edu 36 17 3864441 3864441 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon50 c.C8263T p.R2755X . . . CD300LG 146894 broad.mit.edu 36 17 39290026 39290026 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168323 exon5 c.C759T p.N253N . . . ITGA2B 3674 broad.mit.edu 36 17 39813328 39813328 + De_novo_Start_OutOfFrame SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000419 exon15 c.C1496A p.P499H . . . EFTUD2 9343 broad.mit.edu 36 17 40319630 40319630 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004247 exon3 c.C120T p.D40D . . . HEXIM2 124790 broad.mit.edu 36 17 40602205 40602205 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144608 exon4 c.G107A p.R36H . . . IMP5 162540 broad.mit.edu 36 17 41279149 41279149 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175882 exon1 c.G1097A p.R366H . . . MYBBP1A 10514 broad.mit.edu 36 17 4389651 4389651 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014520 exon26 c.C3795T p.P1265P . . . HOXB5 3215 broad.mit.edu 36 17 44025753 44025753 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002147 exon1 c.C291T p.P97P . . . HOXB6 3216 broad.mit.edu 36 17 44028910 44028910 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018952 exon4 c.C539T p.A180V . . . HOXB7 3217 broad.mit.edu 36 17 44040368 44040368 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004502 exon2 c.G489A p.T163T . . . HOXB9 3219 broad.mit.edu 36 17 44058218 44058218 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024017 exon1 c.T413C p.L138S . . . LRRC59 55379 broad.mit.edu 36 17 45815469 45815469 + Missense_Mutation SNP A T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018509 exon7 c.T803A p.V268E . . . SPATA20 64847 broad.mit.edu 36 17 45982593 45982593 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022827 exon9 c.G1019A p.R340H . . . WFIKKN2 124857 broad.mit.edu 36 17 46272619 46272619 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175575 exon2 c.C971T p.P324L . . . CUEDC1 404093 broad.mit.edu 36 17 53305156 53305156 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017949 exon5 c.G651A p.G217G . . . EPX 8288 broad.mit.edu 36 17 53626142 53626142 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000502 exon4 c.G415A p.E139K . . . MPO 4353 broad.mit.edu 36 17 53704218 53704218 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000250 exon11 c.G1827A p.P609P . . . SEPT4 5414 broad.mit.edu 36 17 53958075 53958075 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080416 exon4 c.G461A p.R154Q . . . MED13 9969 broad.mit.edu 36 17 57397149 57397149 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005121 exon20 c.G4844T p.S1615I . . . MED13 9969 broad.mit.edu 36 17 57416954 57416954 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005121 exon14 c.T2531C p.I844T . . . SCN4A 6329 broad.mit.edu 36 17 59403457 59403457 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000334 exon2 c.G379A p.V127M . . . GNA13 10672 broad.mit.edu 36 17 60441035 60441035 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006572 exon4 c.T936C p.F312F . . . AXIN2 8313 broad.mit.edu 36 17 60976225 60976225 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004655 exon3 c.C831T p.S277S . . . ABCA9 10350 broad.mit.edu 36 17 64493978 64493978 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon32 c.T4130C p.L1377P . . . KIAA0753 9851 broad.mit.edu 36 17 6454198 6454198 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014804 exon9 c.C1552T p.R518C . . . TEKT1 83659 broad.mit.edu 36 17 6644843 6644843 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053285 exon7 c.C996T p.V332V . . . C17orf80 55028 broad.mit.edu 36 17 68743468 68743468 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100622 exon3 c.C252T p.D84D . . . CD300E 342510 broad.mit.edu 36 17 70121699 70121699 + Nonsense_Mutation SNP G A A rs61748965 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181449 exon3 c.C457T p.R153X . . . RAB37 326624 broad.mit.edu 36 17 70237099 70237099 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175738 exon2 c.C182T p.T61M . . . USH1G 124590 broad.mit.edu 36 17 70428227 70428227 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173477 exon2 c.C299T p.T100M . . . SRP68 6730 broad.mit.edu 36 17 71571764 71571764 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014230 exon4 c.G449A p.R150Q . . . FOXJ1 2302 broad.mit.edu 36 17 71647742 71647742 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001454 exon2 c.C330T p.D110D . . . ST6GALNAC1 55808 broad.mit.edu 36 17 72151293 72151293 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018414 exon1 c.G23A p.C8Y . . . MXRA7 439921 broad.mit.edu 36 17 72185323 72185323 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008528 exon4 c.C557T p.T186M . . . NLGN2 57555 broad.mit.edu 36 17 7259838 7259838 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020795 exon6 c.G1322A p.R441Q . . . AFMID 125061 broad.mit.edu 36 17 73712367 73712367 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010982 exon5 c.C344T p.T115M . . . ENGASE 64772 broad.mit.edu 36 17 74587939 74587939 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042573 exon5 c.C621T p.A207A . . . TP53 7157 broad.mit.edu 36 17 7520038 7520038 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126114 exon4 c.C374T p.T125M . . . CBX2 84733 broad.mit.edu 36 17 75372333 75372333 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005189 exon5 c.C496T p.R166X . . . DNAH2 146754 broad.mit.edu 36 17 7577215 7577215 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon4 c.C485T p.T162M . . . RPTOR 57521 broad.mit.edu 36 17 76473416 76473416 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020761 exon17 c.C1856T p.A619V . . . RPTOR 57521 broad.mit.edu 36 17 76549805 76549805 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020761 exon31 c.C3622T p.R1208W . . . ZNF750 79755 broad.mit.edu 36 17 78381365 78381365 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024702 exon3 c.C2114T p.A705V . . . TBCD 6904 broad.mit.edu 36 17 78480408 78480408 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005993 exon31 c.C2824T p.R942X . . . GUCY2D 3000 broad.mit.edu 36 17 7856331 7856331 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000180 exon9 c.G1894A p.A632T . . . GUCY2D 3000 broad.mit.edu 36 17 7857940 7857940 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000180 exon12 c.C2281T p.R761W . . . TIMM22 29928 broad.mit.edu 36 17 847253 847253 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013337 exon1 c.C121T p.L41F . . . GLP2R 9340 broad.mit.edu 36 17 9733661 9733661 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004246 exon13 c.C1576T p.R526W . . . PRPF8 10594 broad.mit.edu 36 17 1531673 1531674 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006445 exon6 c.714_715del p.238_239del . . . CNDP2 55748 broad.mit.edu 36 18 70331791 70331792 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018235 exon8 c.760_761insG p.R254fs . . . CEP192 55125 broad.mit.edu 36 18 13085600 13085600 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032142 exon35 c.G6353A p.R2118H . . . CDH2 1000 broad.mit.edu 36 18 23819019 23819019 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon13 c.G2152A p.A718T . . . ATP5A1 498 broad.mit.edu 36 18 41921339 41921339 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004046 exon7 c.A917G p.H306R . . . TCF4 6925 broad.mit.edu 36 18 51405275 51405275 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083962 exon2 c.C71T p.A24V . . . NEDD4L 23327 broad.mit.edu 36 18 54208876 54208876 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015277 exon28 c.G2614A p.A872T . . . CDH19 28513 broad.mit.edu 36 18 62386780 62386780 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021153 exon3 c.T343G p.L115V . . . FBXO15 201456 broad.mit.edu 36 18 69891927 69891927 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152676 exon10 c.G1054A p.V352I . . . PTPRM 5797 broad.mit.edu 36 18 7764263 7764263 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon2 c.C190T p.P64S . . . PTPRM 5797 broad.mit.edu 36 18 8103645 8103645 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon12 c.C2018T p.A673V . . . RALBP1 10928 broad.mit.edu 36 18 9503167 9503167 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006788 exon2 c.T124C p.Y42H . . . FHOD3 80206 broad.mit.edu 36 18 32459514 32459514 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon10 c.1000delC p.P334fs . . . ANKRD12 23253 broad.mit.edu 36 18 9245261 9245261 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon9 c.1996delA p.K666fs . . . BCL2L12 83596 broad.mit.edu 36 19 54862167 54862168 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138639 exon3 c.439_440insC p.A147fs . . . IL4I1 259307 broad.mit.edu 36 19 55086160 55086161 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152899 exon7 c.653_654insG p.E218fs . . . DNMT1 1786 broad.mit.edu 36 19 10109650 10109650 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130823 exon36 c.G4151A p.R1384Q . . . DNMT1 1786 broad.mit.edu 36 19 10152064 10152064 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130823 exon4 c.G407A p.R136H . . . ICAM5 7087 broad.mit.edu 36 19 10265764 10265764 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003259 exon8 c.T1760C p.V587A . . . SMARCA4 6597 broad.mit.edu 36 19 10975031 10975031 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003072 exon13 c.G1959A p.P653P . . . DOCK6 57572 broad.mit.edu 36 19 11187115 11187115 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020812 exon32 c.C4054T p.R1352C . . . C19orf39 126074 broad.mit.edu 36 19 11347276 11347276 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175871 exon2 c.C274A p.L92I . . . CIRBP 1153 broad.mit.edu 36 19 1221937 1221937 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001280 exon2 c.C5T p.A2V . . . ZNF44 51710 broad.mit.edu 36 19 12245634 12245634 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016264 exon4 c.T436C p.C146R . . . ZNF564 163050 broad.mit.edu 36 19 12498528 12498528 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144976 exon4 c.G1394A p.R465Q . . . RNASEH2A 10535 broad.mit.edu 36 19 12779306 12779306 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006397 exon4 c.G397A p.V133M . . . MAST1 22983 broad.mit.edu 36 19 12839684 12839684 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014975 exon20 c.G2459A p.R820H . . . MAST1 22983 broad.mit.edu 36 19 12841054 12841054 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014975 exon22 c.C2948T p.A983V . . . IL27RA 9466 broad.mit.edu 36 19 14020807 14020807 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004843 exon9 c.G1156A p.G386R . . . CD97 976 broad.mit.edu 36 19 14376305 14376305 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025160 exon12 c.C1413T p.N471N . . . OR7A17 26333 broad.mit.edu 36 19 14852800 14852800 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030901 exon1 c.T368C p.F123S . . . NOTCH3 4854 broad.mit.edu 36 19 15150906 15150906 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000435 exon22 c.G3648A p.A1216A . . . EPHX3 79852 broad.mit.edu 36 19 15199334 15199334 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024794 exon7 c.C997T p.P333S . . . CYP4F3 4051 broad.mit.edu 36 19 15613323 15613323 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199209 exon2 c.G98A p.R33H . . . TPM4 7171 broad.mit.edu 36 19 16053749 16053749 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145160 exon3 c.C267T p.N89N . . . HSH2D 84941 broad.mit.edu 36 19 16129434 16129434 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032855 exon8 c.G889A p.G297S . . . C19orf44 84167 broad.mit.edu 36 19 16473246 16473246 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032207 exon2 c.G643A p.E215K . . . ZNF493 284443 broad.mit.edu 36 19 21399357 21399357 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175910 exon2 c.A1672G p.K558E . . . ZNF675 171392 broad.mit.edu 36 19 23637800 23637800 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138330 exon2 c.G4T p.G2X . . . LMNB2 84823 broad.mit.edu 36 19 2382784 2382784 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032737 exon10 c.C1647T p.G549G . . . ZNF536 9745 broad.mit.edu 36 19 35626454 35626454 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014717 exon2 c.G145A p.E49K . . . ZNF536 9745 broad.mit.edu 36 19 35627264 35627264 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014717 exon2 c.G955A p.V319M . . . SLC7A9 11136 broad.mit.edu 36 19 38042610 38042610 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126335 exon8 c.C850T p.L284L . . . ATCAY 85300 broad.mit.edu 36 19 3864846 3864846 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033064 exon9 c.C957T p.C319C . . . SHC2 25759 broad.mit.edu 36 19 387639 387639 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012435 exon5 c.C765T p.G255G . . . DAPK3 1613 broad.mit.edu 36 19 3912142 3912142 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001348 exon6 c.C647T p.P216L DAPK3,lung,NS,Substitution - Missense,-1 . . ZBTB7A 51341 broad.mit.edu 36 19 4005676 4005676 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015898 exon2 c.G555A p.W185X . . . MAP2K2 5605 broad.mit.edu 36 19 4061646 4061646 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030662 exon3 c.A311G p.H104R . . . ATP4A 495 broad.mit.edu 36 19 40742759 40742759 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000704 exon7 c.G844A p.A282T . . . MLL4 9757 broad.mit.edu 36 19 40907809 40907809 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014727 exon10 c.G3509A p.R1170H . . . ZNF461 92283 broad.mit.edu 36 19 41839226 41839226 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153257 exon4 c.A196G p.M66V . . . SIPA1L3 23094 broad.mit.edu 36 19 43264335 43264335 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015073 exon3 c.G290A p.S97N . . . YIF1B 90522 broad.mit.edu 36 19 43489957 43489957 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145462 exon7 c.G647A p.G216D . . . FAM98C 147965 broad.mit.edu 36 19 43587901 43587901 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174905 exon5 c.G633T p.W211C . . . RYR1 6261 broad.mit.edu 36 19 43626729 43626729 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon6 c.C525T p.S175S . . . SIRT2 22933 broad.mit.edu 36 19 44066170 44066170 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030593 exon8 c.T457G p.F153V . . . PAF1 54623 broad.mit.edu 36 19 44569237 44569237 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019088 exon12 c.A1029G p.S343S . . . FCGBP 8857 broad.mit.edu 36 19 45081602 45081602 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon18 c.G8420A p.R2807Q . . . PRX 57716 broad.mit.edu 36 19 45592247 45592247 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181882 exon7 c.C3852T p.S1284S . . . SNRPA 6626 broad.mit.edu 36 19 45955196 45955196 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004596 exon2 c.G193A p.A65T . . . PAFAH1B3 5050 broad.mit.edu 36 19 47495990 47495990 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002573 exon4 c.G380A p.R127Q . . . MEGF8 1954 broad.mit.edu 36 19 47539623 47539623 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001410 exon9 c.C1668T p.D556D . . . ZNF233 353355 broad.mit.edu 36 19 49470300 49470300 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181756 exon5 c.G1647A p.S549S . . . ZFP112 7771 broad.mit.edu 36 19 49524046 49524046 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013380 exon4 c.C2104A p.L702I . . . ZNF285 26974 broad.mit.edu 36 19 49583827 49583827 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152354 exon4 c.C420T p.S140S . . . PVRL2 5819 broad.mit.edu 36 19 50067162 50067162 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002856 exon3 c.G691A p.A231T . . . RTN2 6253 broad.mit.edu 36 19 50690005 50690005 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206900 exon3 c.C178T p.R60W . . . EML2 24139 broad.mit.edu 36 19 50808714 50808714 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193269 exon21 c.T2190C p.H730H . . . NOVA2 4858 broad.mit.edu 36 19 51135051 51135051 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002516 exon4 c.C1389T p.P463P . . . MEIS3 56917 broad.mit.edu 36 19 52602003 52602003 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020160 exon11 c.C1170T p.I390I . . . PLA2G4C 8605 broad.mit.edu 36 19 53300489 53300489 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159323 exon3 c.G33A p.G11G . . . IZUMO1 284359 broad.mit.edu 36 19 53939575 53939575 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182575 exon4 c.T344C p.L115S . . . PPP1R15A 23645 broad.mit.edu 36 19 54069043 54069043 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014330 exon2 c.C741T p.S247S . . . TULP2 7288 broad.mit.edu 36 19 54083224 54083224 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003323 exon8 c.C743T p.T248M . . . IRF3 3661 broad.mit.edu 36 19 54858507 54858507 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197123 exon3 c.G137A p.R46H . . . PNKP 11284 broad.mit.edu 36 19 55057647 55057647 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007254 exon10 c.C896T p.P299L . . . SPIB 6689 broad.mit.edu 36 19 55618688 55618688 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003121 exon5 c.G354A p.P118P . . . SYT3 84258 broad.mit.edu 36 19 55820360 55820360 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032298 exon7 c.C1578T p.I526I . . . SHANK1 50944 broad.mit.edu 36 19 55867117 55867117 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016148 exon21 c.C2644T p.P882S . . . SIGLEC10 89790 broad.mit.edu 36 19 56611740 56611740 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171157 exon3 c.G698A p.R233H . . . ZNF528 84436 broad.mit.edu 36 19 57610857 57610857 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032423 exon7 c.C940T p.R314X . . . ZNF468 90333 broad.mit.edu 36 19 58036574 58036574 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199132 exon5 c.G626A p.R209H . . . ZNF321 399669 broad.mit.edu 36 19 58124437 58124437 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203307 exon2 c.C26T p.A9V . . . ZNF665 79788 broad.mit.edu 36 19 58360567 58360567 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024733 exon4 c.C988T p.R330C . . . NLRP12 91662 broad.mit.edu 36 19 59005723 59005723 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144687 exon3 c.T1002C p.P334P . . . PRKCG 5582 broad.mit.edu 36 19 59093117 59093117 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002739 exon10 c.A1032G p.G344G . . . TTYH1 57348 broad.mit.edu 36 19 59622275 59622275 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005367 exon2 c.C288T p.V96V . . . CCDC106 29903 broad.mit.edu 36 19 60852391 60852391 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013301 exon3 c.G40A p.D14N . . . NLRP4 147945 broad.mit.edu 36 19 61061735 61061735 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon3 c.G1164A p.P388P . . . GTF2F1 2962 broad.mit.edu 36 19 6331372 6331372 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002096 exon13 c.G1474A p.V492M . . . ZNF8 7554 broad.mit.edu 36 19 63497805 63497805 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021089 exon4 c.C819T p.T273T . . . TRIM28 10155 broad.mit.edu 36 19 63753137 63753137 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005762 exon15 c.C2116T p.R706C . . . DENND1C 79958 broad.mit.edu 36 19 6418848 6418848 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024898 exon23 c.A2073G p.E691E . . . TUBB4 10382 broad.mit.edu 36 19 6446458 6446458 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006087 exon4 c.C1052T p.T351M . . . MCOLN1 57192 broad.mit.edu 36 19 7497677 7497677 + Silent SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020533 exon4 c.C436A p.R146R . . . KIAA1543 57662 broad.mit.edu 36 19 7576119 7576119 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080429 exon2 c.G156A p.V52V . . . CD209 30835 broad.mit.edu 36 19 7715880 7715880 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144894 exon3 c.G715A p.A239T . . . FBN3 84467 broad.mit.edu 36 19 8087654 8087654 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032447 exon28 c.G3616A p.V1206I . . . ZNF558 148156 broad.mit.edu 36 19 8792929 8792929 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144693 exon3 c.G174A p.A58A . . . ZNF317 57693 broad.mit.edu 36 19 9127712 9127712 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190791 exon2 c.C20T p.T7I . . . OLFM2 93145 broad.mit.edu 36 19 9832411 9832411 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058164 exon2 c.C123T p.D41D . . . CNN2 1265 broad.mit.edu 36 19 987152 987152 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004368 exon5 c.C414T p.S138S . . . ICAM4 3386 broad.mit.edu 36 19 10258719 10258719 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001544 exon1 c.31delT p.F11fs . . . JAK3 3718 broad.mit.edu 36 19 17816112 17816112 + Frame_Shift_Del DEL G - - rs67296869 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000215 exon2 c.115delC p.Q39fs . . . GZMM 3004 broad.mit.edu 36 19 495110 495110 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005317 exon1 c.39delG p.L13fs . . . APOC1 341 broad.mit.edu 36 19 50111353 50111354 + Frame_Shift_Del DEL AC - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001645 exon3 c.125_126del p.42_42del . . . CLPTM1 1209 broad.mit.edu 36 19 50181655 50181655 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001294 exon7 c.775delC p.P259fs . . . MYH14 79784 broad.mit.edu 36 19 55450384 55450384 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145809 exon17 c.2041delG p.G681fs . . . INSR 3643 broad.mit.edu 36 19 7068191 7068191 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon22 c.4025delG p.G1342fs . . . MUC16 94025 broad.mit.edu 36 19 8917821 8917821 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.30625delA p.T10209fs . . . PRPF38B 55119 broad.mit.edu 36 1 109043978 109043979 + Frame_Shift_Ins INS - A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018061 exon6 c.1454_1455insA p.S485fs . . . CHIT1 1118 broad.mit.edu 36 1 201452771 201452772 + Frame_Shift_Ins INS - T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003465 exon11 c.1270_1271insA p.A424fs . . . GNPAT 8443 broad.mit.edu 36 1 229474716 229474717 + Frame_Shift_Ins INS - T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014236 exon11 c.1558_1559insT p.V520fs . . . SLC25A24 29957 broad.mit.edu 36 1 108505347 108505347 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013386 exon4 c.C490A p.R164S . . . AHCYL1 10768 broad.mit.edu 36 1 110357081 110357081 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006621 exon5 c.C517T p.R173C . . . SLC16A1 6566 broad.mit.edu 36 1 113262027 113262027 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166496 exon4 c.G524A p.R175K . . . VTCN1 79679 broad.mit.edu 36 1 117500867 117500867 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024626 exon3 c.C297T p.G99G . . . ADAM30 11085 broad.mit.edu 36 1 120239880 120239880 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021794 exon1 c.C603T p.H201H . . . NOTCH2 4853 broad.mit.edu 36 1 120269741 120269741 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024408 exon25 c.G4221A p.S1407S . . . VPS13D 55187 broad.mit.edu 36 1 12243391 12243391 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon11 c.C1165T p.R389C . . . AADACL4 343066 broad.mit.edu 36 1 12648750 12648750 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013630 exon4 c.G641A p.R214Q . . . ATAD3B 83858 broad.mit.edu 36 1 1411029 1411029 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031921 exon9 c.G911A p.S304N . . . POLR3C 10623 broad.mit.edu 36 1 144319962 144319962 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006468 exon3 c.C202T p.H68Y . . . FMO5 2330 broad.mit.edu 36 1 145154009 145154009 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144830 exon2 c.T263G p.V88G . . . GJA8 2703 broad.mit.edu 36 1 145846863 145846863 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005267 exon2 c.G157A p.V53M . . . PLEKHO1 51177 broad.mit.edu 36 1 148397947 148397947 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016274 exon6 c.C835T p.R279W . . . RPRD2 23248 broad.mit.edu 36 1 148699392 148699392 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015203 exon9 c.T1386C p.S462S . . . CGN 57530 broad.mit.edu 36 1 149758487 149758487 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020770 exon2 c.C868A p.L290M . . . TCHH 7062 broad.mit.edu 36 1 150349389 150349389 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.G2928T p.E976D . . . KPRP 448834 broad.mit.edu 36 1 150999746 150999746 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025231 exon2 c.G1058A p.R353H . . . HCN3 57657 broad.mit.edu 36 1 153524745 153524745 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020897 exon8 c.G2192A p.R731H . . . ASH1L 55870 broad.mit.edu 36 1 153757774 153757774 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon2 c.G161A p.R54Q . . . TMEM79 84283 broad.mit.edu 36 1 154522251 154522251 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032323 exon2 c.G610A p.V204M . . . PEAR1 375033 broad.mit.edu 36 1 155141792 155141792 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080471 exon4 c.C259T p.R87C . . . ARHGEF11 9826 broad.mit.edu 36 1 155184791 155184791 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198236 exon23 c.G2049A p.A683A . . . CDK11B 984 broad.mit.edu 36 1 1562688 1562688 + Silent SNP A G G rs61745144 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033486 exon14 c.T1509C p.Y503Y . . . MNDA 4332 broad.mit.edu 36 1 157078609 157078609 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002432 exon2 c.T42G p.F14L . . . AGMAT 79814 broad.mit.edu 36 1 15773887 15773887 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024758 exon6 c.G937A p.V313M . . . IGSF8 93185 broad.mit.edu 36 1 158329368 158329368 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052868 exon4 c.C1282T p.R428W . . . ADAMTS4 9507 broad.mit.edu 36 1 159434952 159434952 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005099 exon1 c.G90A p.P30P . . . UQCRHL 440567 broad.mit.edu 36 1 16006717 16006717 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001089591 exon1 c.C15T p.D5D . . . SPEN 23013 broad.mit.edu 36 1 16133395 16133395 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015001 exon11 c.C8073T p.N2691N . . . ZBTB17 7709 broad.mit.edu 36 1 16146124 16146124 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003443 exon4 c.C287T p.A96V . . . RCSD1 92241 broad.mit.edu 36 1 165919771 165919771 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052862 exon2 c.C17T p.A6V . . . NADK 65220 broad.mit.edu 36 1 1675463 1675463 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198995 exon8 c.G892A p.A298T . . . BAT2L2 23215 broad.mit.edu 36 1 169768245 169768245 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015172 exon12 c.G1388A p.R463H . . . RABGAP1L 9910 broad.mit.edu 36 1 172606788 172606788 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014857 exon12 c.G1514A p.C505Y . . . PADI6 353238 broad.mit.edu 36 1 17587501 17587501 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207421 exon7 c.G718A p.D240N . . . PADI6 353238 broad.mit.edu 36 1 17593139 17593139 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207421 exon10 c.G1157A p.R386Q . . . RCC2 55920 broad.mit.edu 36 1 17621812 17621812 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136204 exon4 c.C631T p.R211W . . . TDRD5 163589 broad.mit.edu 36 1 177926640 177926640 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199085 exon18 c.G3047A p.R1016Q . . . NPL 80896 broad.mit.edu 36 1 181050591 181050591 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030769 exon6 c.G339A p.P113P . . . DHX9 1660 broad.mit.edu 36 1 181119051 181119051 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001357 exon25 c.C3069T p.H1023H . . . HMCN1 83872 broad.mit.edu 36 1 184310530 184310530 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon53 c.C8174T p.A2725V . . . ASPM 259266 broad.mit.edu 36 1 195357675 195357675 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon16 c.G3863A p.R1288H . . . PTPRC 5788 broad.mit.edu 36 1 196932487 196932487 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002838 exon4 c.A118G p.S40G . . . PTPRC 5788 broad.mit.edu 36 1 196952547 196952547 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon10 c.C916T p.R306C . . . MYBPH 4608 broad.mit.edu 36 1 201410258 201410258 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004997 exon3 c.G431A p.R144H . . . TMCC2 9911 broad.mit.edu 36 1 203477450 203477450 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014858 exon2 c.C402T p.Y134Y . . . PIGR 5284 broad.mit.edu 36 1 205173102 205173102 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002644 exon7 c.G1738A p.A580T . . . DDOST 1650 broad.mit.edu 36 1 20853778 20853778 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005216 exon6 c.C612T p.A204A . . . ANGEL2 90806 broad.mit.edu 36 1 211253079 211253079 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144567 exon2 c.T364C p.S122P . . . EIF4G3 8672 broad.mit.edu 36 1 21141357 21141357 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003760 exon9 c.C709T p.L237L . . . EIF4G3 8672 broad.mit.edu 36 1 21172122 21172122 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003760 exon6 c.C383T p.T128M . . . TGFB2 7042 broad.mit.edu 36 1 216603367 216603367 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135599 exon2 c.C415T p.L139F . . . RAB3GAP2 25782 broad.mit.edu 36 1 218431241 218431241 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012414 exon14 c.G1279A p.D427N . . . MARK1 4139 broad.mit.edu 36 1 218892021 218892021 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018650 exon15 c.C1642T p.R548X . . . HSPG2 3339 broad.mit.edu 36 1 22079514 22079514 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon16 c.C2124T p.S708S . . . GALNT2 2590 broad.mit.edu 36 1 228481752 228481752 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004481 exon16 c.C1641T p.S547S . . . PGBD5 79605 broad.mit.edu 36 1 228539556 228539556 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024554 exon4 c.C789T p.N263N . . . KIAA1804 84451 broad.mit.edu 36 1 231556243 231556243 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032435 exon3 c.G1054A p.V352M . . . KIAA1804 84451 broad.mit.edu 36 1 231564530 231564530 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032435 exon5 c.G1420A p.V474M . . . TARBP1 6894 broad.mit.edu 36 1 232632032 232632032 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005646 exon16 c.C2624T p.S875L . . . RBM34 23029 broad.mit.edu 36 1 233361680 233361680 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015014 exon11 c.C1264T p.R422C . . . CEP170 9859 broad.mit.edu 36 1 241428997 241428997 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042405 exon7 c.G619C p.A207P . . . KIF26B 55083 broad.mit.edu 36 1 243597247 243597247 + Silent SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018012 exon3 c.C954A p.T318T . . . KIF26B 55083 broad.mit.edu 36 1 243914171 243914171 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018012 exon11 c.G2272A p.A758T . . . OR2L13 284521 broad.mit.edu 36 1 246329670 246329670 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175911 exon3 c.G370A p.A124T . . . OR2T27 403239 broad.mit.edu 36 1 246880778 246880778 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001824 exon1 c.G31A p.D11N . . . UBXN11 91544 broad.mit.edu 36 1 26484959 26484959 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077262 exon5 c.G356A p.R119Q . . . SESN2 83667 broad.mit.edu 36 1 28478238 28478238 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031459 exon9 c.C1255T p.R419W . . . PTPRU 10076 broad.mit.edu 36 1 29481803 29481803 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005704 exon12 c.C1897T p.R633W . . . MATN1 4146 broad.mit.edu 36 1 30961522 30961522 + Missense_Mutation SNP C T T rs34069015 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002379 exon5 c.G1028A p.R343Q . . . PUM1 9698 broad.mit.edu 36 1 31199200 31199200 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001020658 exon15 c.C2539T p.R847W . . . KHDRBS1 10657 broad.mit.edu 36 1 32280722 32280722 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006559 exon9 c.C1242T p.D414D . . . MEGF6 1953 broad.mit.edu 36 1 3508950 3508950 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001409 exon2 c.C206T p.T69M . . . GRIK3 2899 broad.mit.edu 36 1 37118832 37118832 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000831 exon3 c.C540T p.D180D . . . KIAA0562 9731 broad.mit.edu 36 1 3743055 3743055 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014704 exon10 c.C1181T p.A394V . . . MACF1 23499 broad.mit.edu 36 1 39625585 39625585 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon54 c.G8298A p.R2766R . . . MACF1 23499 broad.mit.edu 36 1 39723921 39723921 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon95 c.C16161T p.S5387S . . . CTPS 1503 broad.mit.edu 36 1 41247805 41247805 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001905 exon17 c.C1648T p.R550W . . . KIAA0467 23334 broad.mit.edu 36 1 43665878 43665878 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015284 exon11 c.C992T p.A331V . . . KIAA0467 23334 broad.mit.edu 36 1 43681864 43681864 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015284 exon47 c.C5938T p.R1980C . . . PTCH2 8643 broad.mit.edu 36 1 45066800 45066800 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166292 exon12 c.G1555A p.V519I . . . MUTYH 4595 broad.mit.edu 36 1 45571053 45571053 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048173 exon7 c.G461A p.R154H . . . LRRC41 10489 broad.mit.edu 36 1 46517757 46517757 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006369 exon8 c.C2137T p.R713C . . . SLC5A9 200010 broad.mit.edu 36 1 48467192 48467192 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135181 exon3 c.C318T p.A106A . . . CC2D1B 200014 broad.mit.edu 36 1 52598692 52598692 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032449 exon6 c.G595A p.G199S . . . PRPF38A 84950 broad.mit.edu 36 1 52650880 52650880 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032864 exon5 c.A605G p.E202G . . . MRPL37 51253 broad.mit.edu 36 1 54454451 54454451 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016491 exon6 c.C1040T p.T347M . . . C1orf168 199920 broad.mit.edu 36 1 57030450 57030450 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004303 exon2 c.C624T p.N208N . . . CHD5 26038 broad.mit.edu 36 1 6106637 6106637 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon31 c.G4657A p.A1553T . . . CHD5 26038 broad.mit.edu 36 1 6124896 6124896 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon15 c.C2315T p.A772V . . . JAK1 3716 broad.mit.edu 36 1 65093829 65093829 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002227 exon11 c.G1599A p.T533T . . . PHF13 148479 broad.mit.edu 36 1 6602512 6602512 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153812 exon3 c.C204T p.D68D . . . DNAJC11 55735 broad.mit.edu 36 1 6622597 6622597 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018198 exon11 c.C1205T p.A402V . . . SERBP1 26135 broad.mit.edu 36 1 67663436 67663436 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018067 exon3 c.C523T p.R175C . . . LHX8 431707 broad.mit.edu 36 1 75399148 75399148 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001933 exon10 c.C1051A p.L351M . . . LPAR3 23566 broad.mit.edu 36 1 85104279 85104279 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012152 exon2 c.C113T p.T38M . . . SYDE2 84144 broad.mit.edu 36 1 85428907 85428907 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032184 exon2 c.C862T p.R288C . . . HS2ST1 9653 broad.mit.edu 36 1 87311231 87311231 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134492 exon2 c.C151T p.R51X . . . SLC2A7 155184 broad.mit.edu 36 1 8986128 8986128 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207420 exon12 c.G1357A p.G453R . . . GLMN 11146 broad.mit.edu 36 1 92507921 92507921 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053274 exon9 c.C924T p.S308S . . . RPAP2 79871 broad.mit.edu 36 1 92574560 92574560 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024813 exon10 c.T1607A p.V536D . . . BCAR3 8412 broad.mit.edu 36 1 93912902 93912902 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003567 exon2 c.C173A p.P58H . . . ABCD3 5825 broad.mit.edu 36 1 94716441 94716441 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002858 exon8 c.G666A p.T222T . . . PIK3CD 5293 broad.mit.edu 36 1 9693158 9693158 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005026 exon3 c.G58A p.V20I . . . CLSTN1 22883 broad.mit.edu 36 1 9718154 9718154 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014944 exon12 c.C1811A p.P604H . . . SYCP1 6847 broad.mit.edu 36 1 115338925 115338925 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003176 exon31 c.2787delA p.P929fs . . . FAM189B 10712 broad.mit.edu 36 1 153488202 153488202 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198264 exon3 c.452delC p.P151fs . . . ASH1L 55870 broad.mit.edu 36 1 153675188 153675190 + In_Frame_Del DEL ATG - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 ATG ATG ATG - ATG ATG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon5 c.5380_5382del p.1794_1794del . . . KIAA0907 22889 broad.mit.edu 36 1 154153046 154153047 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CT CT CT - CT CT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014949 exon12 c.1546_1547del p.516_516del . . . UBR4 23352 broad.mit.edu 36 1 19409242 19409242 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020765 exon1 c.88delG p.E30fs . . . PLEKHA6 22874 broad.mit.edu 36 1 202500758 202500758 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014935 exon6 c.316delC p.L106fs . . . PLXNA2 5362 broad.mit.edu 36 1 206382410 206382410 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025179 exon4 c.1393delC p.H465fs . . . TCEB3 6924 broad.mit.edu 36 1 23950609 23950611 + In_Frame_Del DEL GAA - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 GAA GAA GAA - GAA GAA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003198 exon4 c.1005_1007del p.335_336del . . . AHDC1 27245 broad.mit.edu 36 1 27749456 27749456 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029882 exon6 c.1758delA p.K586fs . . . SDC3 9672 broad.mit.edu 36 1 31122429 31122429 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014654 exon3 c.427delC p.L143fs . . . CSF3R 1441 broad.mit.edu 36 1 36708008 36708008 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172313 exon11 c.1306delC p.H436fs . . . DNAJC11 55735 broad.mit.edu 36 1 6628606 6628607 + Frame_Shift_Del DEL CA - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CA CA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018198 exon8 c.723_724del p.241_242del . . . ISM1 140862 broad.mit.edu 36 20 13208508 13208508 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080826 exon3 c.C606T p.G202G . . . KIF16B 55614 broad.mit.edu 36 20 16285027 16285027 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon23 c.G3569A p.R1190H . . . C20orf26 26074 broad.mit.edu 36 20 20205861 20205861 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015585 exon22 c.C2555T p.T852M . . . TMEM90B 79953 broad.mit.edu 36 20 24513507 24513507 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024893 exon3 c.G496A p.D166N . . . NINL 22981 broad.mit.edu 36 20 25441496 25441496 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025176 exon4 c.C424T p.R142C . . . HCK 3055 broad.mit.edu 36 20 30126163 30126163 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172129 exon5 c.G343A p.V115I . . . TM9SF4 9777 broad.mit.edu 36 20 30192981 30192981 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014742 exon4 c.C250T p.R84W . . . C20orf112 140688 broad.mit.edu 36 20 30504408 30504408 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080616 exon6 c.T828C p.C276C . . . DNMT3B 1789 broad.mit.edu 36 20 30831601 30831601 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175850 exon1 c.C19A p.P7T . . . MAPRE1 22919 broad.mit.edu 36 20 30877499 30877499 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012325 exon2 c.C105T p.I35I . . . EPB41L1 2036 broad.mit.edu 36 20 34273680 34273680 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012156 exon21 c.G2587A p.V863I . . . DLGAP4 22839 broad.mit.edu 36 20 34558555 34558555 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183006 exon2 c.C65T p.P22L . . . MYL9 10398 broad.mit.edu 36 20 34606741 34606741 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006097 exon2 c.C40T p.R14W . . . BLCAP 10904 broad.mit.edu 36 20 35580873 35580873 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167821 exon2 c.C118T p.R40W . . . SIGLEC1 6614 broad.mit.edu 36 20 3625788 3625788 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023068 exon9 c.G2324A p.R775H . . . SIGLEC1 6614 broad.mit.edu 36 20 3632491 3632491 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023068 exon4 c.C954T p.P318P . . . FAM83D 81610 broad.mit.edu 36 20 37014442 37014442 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030919 exon4 c.G1713A p.R571R . . . LPIN3 64900 broad.mit.edu 36 20 39408036 39408036 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022896 exon2 c.C179T p.S60L . . . CHD6 84181 broad.mit.edu 36 20 39467223 39467223 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon37 c.C7572T p.G2524G . . . CHD6 84181 broad.mit.edu 36 20 39514928 39514928 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon21 c.C3189T p.D1063D . . . SGK2 10110 broad.mit.edu 36 20 41629738 41629738 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170693 exon4 c.G106A p.D36N . . . JPH2 57158 broad.mit.edu 36 20 42221893 42221893 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020433 exon2 c.C948T p.G316G . . . HNF4A 3172 broad.mit.edu 36 20 42468144 42468144 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030003 exon2 c.G82A p.A28T . . . HNF4A 3172 broad.mit.edu 36 20 42491609 42491609 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030003 exon10 c.G1219T p.G407C . . . PABPC1L 80336 broad.mit.edu 36 20 42992608 42992608 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001124756 exon8 c.C1066T p.R356C . . . WFDC6 140870 broad.mit.edu 36 20 43600119 43600119 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080827 exon2 c.C120T p.C40C . . . MMP9 4318 broad.mit.edu 36 20 44073327 44073327 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004994 exon5 c.A788G p.D263G . . . MMP9 4318 broad.mit.edu 36 20 44074508 44074508 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004994 exon8 c.G1210A p.G404S . . . SLC2A10 81031 broad.mit.edu 36 20 44788090 44788090 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030777 exon2 c.C1008T p.T336T . . . PREX1 57580 broad.mit.edu 36 20 46675849 46675849 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020820 exon40 c.C4961T p.P1654L . . . PROKR2 128674 broad.mit.edu 36 20 5230914 5230914 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144773 exon2 c.G927A p.K309K . . . BMP7 655 broad.mit.edu 36 20 55192248 55192248 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001719 exon4 c.C895T p.R299C . . . CDH4 1002 broad.mit.edu 36 20 59861292 59861292 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001794 exon6 c.C820T p.R274C . . . CDH4 1002 broad.mit.edu 36 20 59903373 59903373 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001794 exon8 c.T1063G p.Y355D . . . CDH4 1002 broad.mit.edu 36 20 59936812 59936812 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001794 exon12 c.C1941T p.Y647Y . . . ZNF512B 57473 broad.mit.edu 36 20 62069215 62069215 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020713 exon3 c.G227A p.R76Q . . . PAK7 57144 broad.mit.edu 36 20 9494574 9494574 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177990 exon5 c.G1448A p.R483Q . . . ESF1 51575 broad.mit.edu 36 20 13711275 13711275 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016649 exon2 c.512delA p.N171fs . . . CD93 22918 broad.mit.edu 36 20 23014469 23014469 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012072 exon1 c.361delG p.E121fs . . . PTPRT 11122 broad.mit.edu 36 20 40853344 40853344 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon3 c.391delC p.Q131fs . . . C21orf91 54149 broad.mit.edu 36 21 18090836 18090837 + Frame_Shift_Ins INS - T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017447 exon3 c.598_599insA p.E200fs . . . TMPRSS15 5651 broad.mit.edu 36 21 18692484 18692484 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002772 exon2 c.C179T p.A60V . . . TIAM1 7074 broad.mit.edu 36 21 31459247 31459247 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003253 exon17 c.G2894A p.S965N . . . C2CD2 25966 broad.mit.edu 36 21 42200953 42200953 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199050 exon8 c.C563T p.A188V . . . CRYAA 1409 broad.mit.edu 36 21 43465252 43465252 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000394 exon3 c.C315T p.D105D . . . TRAPPC10 7109 broad.mit.edu 36 21 44308046 44308046 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003274 exon7 c.C990T p.R330R . . . IL17RA 23765 broad.mit.edu 36 22 15970338 15970338 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014339 exon13 c.C2229T p.D743D . . . MICAL3 57553 broad.mit.edu 36 22 16743979 16743979 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136004 exon17 c.G2332A p.G778S . . . ZNF74 7625 broad.mit.edu 36 22 19089894 19089894 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003426 exon5 c.G571A p.V191I . . . BCR 613 broad.mit.edu 36 22 21956224 21956224 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021574 exon9 c.C2176T p.R726C . . . CABIN1 23523 broad.mit.edu 36 22 22891508 22891508 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199281 exon31 c.C4921T p.R1641X . . . TRIOBP 11078 broad.mit.edu 36 22 36439211 36439211 + Silent SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039141 exon5 c.C303A p.A101A . . . MICALL1 85377 broad.mit.edu 36 22 36638340 36638340 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033386 exon3 c.G232A p.A78T . . . SOX10 6663 broad.mit.edu 36 22 36703988 36703988 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006941 exon3 c.C529T p.R177W . . . CBX7 23492 broad.mit.edu 36 22 37860389 37860389 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175709 exon5 c.C561T p.G187G . . . TNRC6B 23112 broad.mit.edu 36 22 38999412 38999412 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015088 exon6 c.C2844T p.D948D . . . PMM1 5372 broad.mit.edu 36 22 40309989 40309989 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002676 exon5 c.C394T p.R132W . . . TBC1D22A 25771 broad.mit.edu 36 22 45568250 45568250 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014346 exon3 c.G308A p.R103H . . . ZBED4 9889 broad.mit.edu 36 22 48664441 48664441 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014838 exon2 c.C1127T p.P376L . . . ZBED4 9889 broad.mit.edu 36 22 48666649 48666649 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014838 exon2 c.C3335T p.P1112L . . . SUN2 25777 broad.mit.edu 36 22 37476959 37476961 + In_Frame_Del DEL CTC - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CTC CTC CTC - CTC CTC Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015374 exon4 c.312_314del p.104_105del . . . PRR5-ARHGAP8 553158 broad.mit.edu 36 22 43619843 43619843 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181334 exon11 c.993delC p.I331fs . . . RIBC2 26150 broad.mit.edu 36 22 44192479 44192479 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015653 exon3 c.529delA p.K177fs . . . ODC1 4953 broad.mit.edu 36 2 10499711 10499711 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002539 exon9 c.C791T p.P264L . . . TGFBRAP1 9392 broad.mit.edu 36 2 105263609 105263609 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004257 exon6 c.C1125T p.S375S . . . EDAR 10913 broad.mit.edu 36 2 108895613 108895613 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022336 exon6 c.G482A p.G161D . . . SH3RF3 344558 broad.mit.edu 36 2 109432088 109432088 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099289 exon8 c.G1859A p.R620Q . . . BUB1 699 broad.mit.edu 36 2 111123305 111123305 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004336 exon19 c.G2325A p.K775K . . . FBLN7 129804 broad.mit.edu 36 2 112661397 112661397 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153214 exon8 c.G1163A p.R388H . . . WDR33 55339 broad.mit.edu 36 2 128237160 128237160 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018383 exon7 c.G670A p.G224S . . . UGGT1 56886 broad.mit.edu 36 2 128619892 128619892 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020120 exon18 c.G1897A p.V633I . . . GPR39 2863 broad.mit.edu 36 2 132891770 132891770 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001508 exon1 c.G685A p.V229M . . . ZRANB3 84083 broad.mit.edu 36 2 135701988 135701988 + Silent SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032143 exon14 c.C2022A p.T674T . . . LCT 3938 broad.mit.edu 36 2 136291755 136291755 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002299 exon6 c.G1333A p.G445S . . . THSD7B 80731 broad.mit.edu 36 2 138129696 138129696 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080427 exon21 c.C4013T p.A1338V . . . MBD5 55777 broad.mit.edu 36 2 148964528 148964528 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018328 exon12 c.C4158T p.G1386G . . . CACNB4 785 broad.mit.edu 36 2 152435331 152435331 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145798 exon8 c.G659A p.R220H . . . PXDN 7837 broad.mit.edu 36 2 1646500 1646500 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012293 exon12 c.C1451T p.S484L . . . SCN2A 6326 broad.mit.edu 36 2 165860622 165860622 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040143 exon1 c.C43T p.R15C . . . XIRP2 129446 broad.mit.edu 36 2 167814870 167814870 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C8056T p.Q2686X . . . SPC25 57405 broad.mit.edu 36 2 169454264 169454264 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020675 exon2 c.C12T p.D4D . . . UBR3 130507 broad.mit.edu 36 2 170645394 170645394 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172070 exon38 c.G5503T p.G1835C . . . AGPS 8540 broad.mit.edu 36 2 178066160 178066160 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003659 exon12 c.G1272A p.K424K . . . TTC30B 150737 broad.mit.edu 36 2 178124567 178124567 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152517 exon1 c.C1171T p.R391W . . . RBM45 129831 broad.mit.edu 36 2 178685641 178685641 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152945 exon1 c.T122G p.L41R . . . NEUROD1 4760 broad.mit.edu 36 2 182251180 182251180 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002500 exon2 c.C653A p.P218H . . . FRZB 2487 broad.mit.edu 36 2 183415513 183415513 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001463 exon3 c.G530A p.R177H . . . MYT1L 23040 broad.mit.edu 36 2 1893034 1893034 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon13 c.C1796T p.S599L . . . COL5A2 1290 broad.mit.edu 36 2 189631492 189631492 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000393 exon33 c.C2137T p.R713X . . . MYO1B 4430 broad.mit.edu 36 2 191923157 191923157 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon7 c.G523T p.D175Y . . . DNAH7 56171 broad.mit.edu 36 2 196437623 196437623 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon41 c.G7001A p.R2334H . . . WDR35 57539 broad.mit.edu 36 2 20032808 20032808 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006657 exon9 c.G922A p.A308T . . . APOB 338 broad.mit.edu 36 2 21109738 21109738 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon9 c.G1062T p.E354D . . . ERBB4 2066 broad.mit.edu 36 2 212697789 212697789 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005235 exon2 c.G167A p.C56Y . . . SPAG16 79582 broad.mit.edu 36 2 213883083 213883083 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025436 exon4 c.T335G p.F112C . . . XRCC5 7520 broad.mit.edu 36 2 216734954 216734954 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021141 exon16 c.G1772A p.S591N . . . MARCH4 57574 broad.mit.edu 36 2 216942797 216942797 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020814 exon1 c.C432T p.T144T . . . GPBAR1 151306 broad.mit.edu 36 2 218835699 218835699 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077191 exon2 c.C7T p.P3S . . . ATG9A 79065 broad.mit.edu 36 2 219796709 219796709 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024085 exon9 c.C1441A p.L481M . . . PAX3 5077 broad.mit.edu 36 2 222870060 222870060 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000438 exon2 c.C202T p.R68W . . . IRS1 3667 broad.mit.edu 36 2 227370999 227370999 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005544 exon1 c.G700A p.G234R . . . MFF 56947 broad.mit.edu 36 2 227905491 227905491 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020194 exon5 c.A372G p.E124E . . . DNER 92737 broad.mit.edu 36 2 229980235 229980235 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon10 c.C1680T p.S560S . . . NCL 4691 broad.mit.edu 36 2 232028986 232028986 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005381 exon12 c.G1811A p.R604Q . . . EFHD1 80303 broad.mit.edu 36 2 233245347 233245347 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025202 exon3 c.G535A p.D179N . . . GIGYF2 26058 broad.mit.edu 36 2 233406023 233406023 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon21 c.G2724A p.Q908Q . . . INPP5D 3635 broad.mit.edu 36 2 233736485 233736485 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005541 exon7 c.C826T p.R276C . . . C2orf44 80304 broad.mit.edu 36 2 24114877 24114877 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025203 exon2 c.C992T p.T331M . . . ADCY3 109 broad.mit.edu 36 2 24994869 24994869 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004036 exon1 c.G492A p.A164A . . . DNMT3A 1788 broad.mit.edu 36 2 25351327 25351327 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175629 exon6 c.G626A p.R209H . . . CAD 790 broad.mit.edu 36 2 27298611 27298611 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004341 exon4 c.C398A p.S133Y . . . CAPN13 92291 broad.mit.edu 36 2 30812889 30812889 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144575 exon18 c.G1706A p.R569H . . . EHD3 30845 broad.mit.edu 36 2 31342964 31342964 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014600 exon6 c.G1498A p.E500K . . . CDC42EP3 10602 broad.mit.edu 36 2 37726722 37726722 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006449 exon2 c.G513A p.S171S . . . NRXN1 9378 broad.mit.edu 36 2 50578288 50578288 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135659 exon15 c.C2686T p.R896W . . . PSME4 23198 broad.mit.edu 36 2 54012520 54012520 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014614 exon10 c.T1272C p.L424L . . . PAPOLG 64895 broad.mit.edu 36 2 60840885 60840885 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022894 exon2 c.G130A p.A44T . . . AFTPH 54812 broad.mit.edu 36 2 64672631 64672631 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017657 exon9 c.G2688A p.T896T . . . SERTAD2 9792 broad.mit.edu 36 2 64716812 64716812 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014755 exon2 c.C698T p.T233M . . . SLC1A4 6509 broad.mit.edu 36 2 65097276 65097276 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003038 exon5 c.C999T p.L333L . . . ANTXR1 84168 broad.mit.edu 36 2 69153675 69153675 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053034 exon6 c.G430A p.V144I . . . SNRNP27 11017 broad.mit.edu 36 2 69975833 69975833 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006857 exon2 c.G138A p.P46P . . . ADD2 119 broad.mit.edu 36 2 70776967 70776967 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185054 exon5 c.G392A p.R131Q . . . CLEC4F 165530 broad.mit.edu 36 2 70889927 70889927 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173535 exon7 c.G1754T p.W585L . . . TET3 200424 broad.mit.edu 36 2 74182451 74182451 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144993 exon9 c.G4623A p.T1541T . . . CTNNA2 1496 broad.mit.edu 36 2 80654908 80654908 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon13 c.T1854C p.Y618Y . . . GGCX 2677 broad.mit.edu 36 2 85633945 85633945 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000821 exon8 c.G1076A p.R359H . . . POLR1A 25885 broad.mit.edu 36 2 86155723 86155723 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015425 exon12 c.G1552A p.V518M . . . IMMT 10989 broad.mit.edu 36 2 86242705 86242705 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100169 exon8 c.C798T p.G266G . . . SNRNP200 23020 broad.mit.edu 36 2 96316293 96316293 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014014 exon28 c.G3689T p.S1230I . . . ACTR1B 10120 broad.mit.edu 36 2 97641863 97641863 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005735 exon5 c.G351A p.P117P . . . DNER 92737 broad.mit.edu 36 2 230164674 230164674 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon2 c.451delC p.R151fs . . . COLEC11 78989 broad.mit.edu 36 2 3669287 3669287 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199235 exon8 c.511delG p.G171fs . . . SMEK2 57223 broad.mit.edu 36 2 55679190 55679190 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122964 exon4 c.787delA p.I263fs . . . CLEC4F 165530 broad.mit.edu 36 2 70896867 70896867 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173535 exon4 c.1154delA p.N385fs . . . DYSF 8291 broad.mit.edu 36 2 71651259 71651259 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon30 c.3150delC p.I1050fs . . . RNF103 7844 broad.mit.edu 36 2 86703323 86703325 + In_Frame_Del DEL CTT - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 CTT CTT CTT - CTT CTT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198952 exon1 c.196_198del p.66_66del . . . SENP5 205564 broad.mit.edu 36 3 198096452 198096453 + Frame_Shift_Ins INS - A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152699 exon2 c.3_4insA p.M1fs . . . PTPN23 25930 broad.mit.edu 36 3 47427325 47427326 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015466 exon20 c.3033_3034insC p.P1011fs . . . ABI3BP 25890 broad.mit.edu 36 3 102052257 102052257 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015429 exon14 c.C1237T p.R413C . . . TATDN2 9797 broad.mit.edu 36 3 10287487 10287487 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014760 exon4 c.C1621T p.R541C . . . CEP97 79598 broad.mit.edu 36 3 102964056 102964056 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024548 exon10 c.T1855A p.F619I . . . WDR52 55779 broad.mit.edu 36 3 114598165 114598165 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164496 exon14 c.C1669T p.R557W . . . KIAA1407 57577 broad.mit.edu 36 3 115207456 115207456 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020817 exon10 c.G1457T p.S486I . . . ZBTB20 26137 broad.mit.edu 36 3 115552610 115552610 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164343 exon11 c.C786T p.D262D . . . CASR 846 broad.mit.edu 36 3 123463736 123463736 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000388 exon4 c.G1164A p.S388S . . . ADCY5 111 broad.mit.edu 36 3 124521352 124521352 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183357 exon10 c.C2115T p.N705N . . . SLC41A3 54946 broad.mit.edu 36 3 127214219 127214219 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008485 exon9 c.G1034A p.S345N . . . TMEM40 55287 broad.mit.edu 36 3 12760415 12760415 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018306 exon4 c.C285T p.H95H . . . CCDC37 348807 broad.mit.edu 36 3 127620245 127620245 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182628 exon7 c.C588T p.D196D . . . CAND2 23066 broad.mit.edu 36 3 12820082 12820082 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162499 exon2 c.G164A p.R55Q . . . PLXND1 23129 broad.mit.edu 36 3 130764467 130764467 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon27 c.G4678A p.V1560M . . . CPNE4 131034 broad.mit.edu 36 3 132744222 132744222 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130808 exon15 c.G1408A p.V470M . . . DNAJC13 23317 broad.mit.edu 36 3 133654843 133654843 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015268 exon7 c.G549A p.A183A . . . C3orf36 80111 broad.mit.edu 36 3 135129997 135129997 + Missense_Mutation SNP A C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025041 exon1 c.T341G p.L114R . . . PLS1 5357 broad.mit.edu 36 3 143872641 143872641 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002670 exon4 c.G351A p.Q117Q . . . GRIP2 80852 broad.mit.edu 36 3 14511476 14511476 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080423 exon24 c.G3139A p.G1047S . . . TM4SF4 7104 broad.mit.edu 36 3 150699237 150699237 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004617 exon4 c.G440A p.R147Q . . . P2RY12 64805 broad.mit.edu 36 3 152538777 152538777 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022788 exon3 c.G547A p.G183S . . . P2RY1 5028 broad.mit.edu 36 3 154037139 154037139 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002563 exon1 c.C878A p.P293Q . . . DHX36 170506 broad.mit.edu 36 3 155510183 155510183 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114397 exon5 c.G766A p.A256T . . . TNIK 23043 broad.mit.edu 36 3 172326499 172326499 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161565 exon15 c.C1657T p.R553C . . . FNDC3B 64778 broad.mit.edu 36 3 173451949 173451949 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135095 exon6 c.C714T p.S238S . . . PIK3CA 5290 broad.mit.edu 36 3 180430773 180430773 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon20 c.C2851T p.R951C . . . MCF2L2 23101 broad.mit.edu 36 3 184579888 184579888 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon3 c.C166T p.R56X . . . DVL3 1857 broad.mit.edu 36 3 185365060 185365060 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004423 exon4 c.G440A p.R147H . . . CLCN2 1181 broad.mit.edu 36 3 185557924 185557924 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004366 exon8 c.G818A p.R273Q . . . BCL6 604 broad.mit.edu 36 3 188928964 188928964 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130845 exon6 c.C1418T p.P473L . . . C3orf59 151963 broad.mit.edu 36 3 193999420 193999420 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178496 exon2 c.G925A p.A309T . . . HRASLS 57110 broad.mit.edu 36 3 194463518 194463518 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020386 exon3 c.C205T p.Q69X . . . LRRC15 131578 broad.mit.edu 36 3 195561658 195561658 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130830 exon2 c.C1410T p.N470N . . . NGLY1 55768 broad.mit.edu 36 3 25736045 25736045 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145294 exon12 c.C1749T p.V583V . . . MLH1 4292 broad.mit.edu 36 3 37045328 37045328 + Nonsense_Mutation SNP C T T rs63749795 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000249 exon13 c.C1459T p.R487X . . . ACAA1 30 broad.mit.edu 36 3 38143135 38143135 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130410 exon7 c.G588A p.T196T . . . MYRIP 25924 broad.mit.edu 36 3 40060630 40060630 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015460 exon3 c.C196T p.R66C . . . TRAK1 22906 broad.mit.edu 36 3 42226397 42226397 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon14 c.G1879A p.D627N . . . ABHD5 51099 broad.mit.edu 36 3 43719004 43719004 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016006 exon3 c.G427T p.G143X . . . LARS2 23395 broad.mit.edu 36 3 45475315 45475315 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015340 exon8 c.G683A p.R228H . . . XCR1 2829 broad.mit.edu 36 3 46037779 46037779 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024644 exon2 c.G665A p.R222H . . . NBEAL2 23218 broad.mit.edu 36 3 47017870 47017870 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon29 c.C4582T p.R1528C . . . PLXNB1 5364 broad.mit.edu 36 3 48438570 48438570 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002673 exon6 c.T1468C p.S490P . . . P4HTM 54681 broad.mit.edu 36 3 49015002 49015002 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177938 exon4 c.C693T p.Y231Y . . . NICN1 84276 broad.mit.edu 36 3 49438817 49438817 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032316 exon2 c.C181A p.R61S . . . MST1R 4486 broad.mit.edu 36 3 49908243 49908243 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002447 exon12 c.G2871A p.T957T . . . CACNA2D2 9254 broad.mit.edu 36 3 50391560 50391560 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006030 exon12 c.C1227T p.D409D . . . RBM15B 29890 broad.mit.edu 36 3 51405491 51405491 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013286 exon1 c.C1621T p.R541X . . . GPR62 118442 broad.mit.edu 36 3 51964819 51964819 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080865 exon1 c.C111T p.V37V . . . ALAS1 211 broad.mit.edu 36 3 52217258 52217258 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000688 exon9 c.C1285T p.R429W . . . GLYCTK 132158 broad.mit.edu 36 3 52301875 52301875 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145262 exon5 c.G1265A p.R422Q . . . DNAH1 25981 broad.mit.edu 36 3 52382094 52382094 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon44 c.G6970A p.D2324N . . . STAB1 23166 broad.mit.edu 36 3 52513547 52513547 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015136 exon11 c.C1181T p.A394V . . . STAB1 23166 broad.mit.edu 36 3 52515273 52515273 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015136 exon17 c.G1797A p.A599A . . . STAB1 23166 broad.mit.edu 36 3 52532300 52532300 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015136 exon64 c.C7043T p.A2348V . . . ITIH1 3697 broad.mit.edu 36 3 52796057 52796057 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166434 exon12 c.C1364T p.S455L . . . ITIH3 3699 broad.mit.edu 36 3 52810162 52810162 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002217 exon11 c.G1343T p.R448L . . . CACNA1D 776 broad.mit.edu 36 3 53820230 53820230 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128839 exon46 c.G6171A p.V2057V . . . CHDH 55349 broad.mit.edu 36 3 53831661 53831661 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018397 exon4 c.G752A p.R251H . . . MAGI1 9223 broad.mit.edu 36 3 65317625 65317625 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033057 exon23 c.C3857T p.S1286L . . . MAGI1 9223 broad.mit.edu 36 3 65351861 65351861 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015520 exon14 c.C2412T p.N804N . . . MITF 4286 broad.mit.edu 36 3 70097046 70097046 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198158 exon9 c.G1199A p.R400Q . . . GXYLT2 727936 broad.mit.edu 36 3 73099416 73099416 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080393 exon6 c.G1005A p.W335X . . . EBLN2 55096 broad.mit.edu 36 3 73194112 73194112 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018029 exon1 c.G190A p.A64T . . . PDZRN3 23024 broad.mit.edu 36 3 73515518 73515518 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015009 exon10 c.G2889A p.A963A . . . ROBO2 6092 broad.mit.edu 36 3 77230125 77230125 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128929 exon1 c.T273A p.C91X . . . ROBO1 6091 broad.mit.edu 36 3 78746564 78746564 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon28 c.C4359T p.A1453A . . . DHX36 170506 broad.mit.edu 36 3 155524859 155524859 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114397 exon1 c.41delG p.G14fs . . . MCF2L2 23101 broad.mit.edu 36 3 184477358 184477358 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon15 c.1858delC p.R620fs . . . ETV5 2119 broad.mit.edu 36 3 187280495 187280495 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004454 exon7 c.455delC p.P152fs . . . MTTP 4547 broad.mit.edu 36 4 100731451 100731451 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000253 exon6 c.G538A p.A180T . . . MANBA 4126 broad.mit.edu 36 4 103863095 103863095 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005908 exon4 c.C528T p.C176C . . . ANK2 287 broad.mit.edu 36 4 114494636 114494636 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.C5413T p.P1805S . . . ANKRD50 57182 broad.mit.edu 36 4 125810361 125810361 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167882 exon3 c.G2984A p.R995Q . . . SLC25A31 83447 broad.mit.edu 36 4 128871198 128871198 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031291 exon1 c.C48T p.D16D . . . MFSD8 256471 broad.mit.edu 36 4 129061308 129061308 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152778 exon13 c.C1484T p.T495I . . . UCP1 7350 broad.mit.edu 36 4 141702973 141702973 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021833 exon5 c.C633T p.D211D . . . TBC1D9 23158 broad.mit.edu 36 4 141763284 141763284 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015130 exon21 c.G3316A p.V1106M . . . OTUD4 54726 broad.mit.edu 36 4 146312312 146312312 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102653 exon3 c.G59C p.G20A . . . CC2D2A 57545 broad.mit.edu 36 4 15126657 15126657 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080522 exon11 c.G949A p.G317R . . . FBXW7 55294 broad.mit.edu 36 4 153468835 153468835 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018315 exon8 c.C1153T p.R385C FBXW7,large_intestine,NS,Substitution - Missense,+1 . . LRAT 9227 broad.mit.edu 36 4 155889672 155889672 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004744 exon3 c.G627A p.T209T . . . TKTL2 84076 broad.mit.edu 36 4 164612592 164612592 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032136 exon1 c.G1745T p.R582M . . . CBR4 84869 broad.mit.edu 36 4 170164528 170164528 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032783 exon3 c.C353T p.A118V . . . GALNTL6 442117 broad.mit.edu 36 4 173971367 173971367 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034845 exon7 c.G841T p.G281X . . . CCDC110 256309 broad.mit.edu 36 4 186619299 186619299 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152775 exon5 c.G246A p.S82S . . . TRIML2 205860 broad.mit.edu 36 4 189257183 189257183 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173553 exon4 c.G471T p.K157N . . . WHSC2 7469 broad.mit.edu 36 4 1957879 1957879 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005663 exon5 c.C716T p.A239V . . . GPR125 166647 broad.mit.edu 36 4 22053494 22053494 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145290 exon7 c.C797T p.A266V . . . SH3BP2 6452 broad.mit.edu 36 4 2796219 2796219 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145856 exon4 c.G492A p.T164T . . . KLHL5 51088 broad.mit.edu 36 4 38774888 38774888 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015990 exon6 c.C1433T p.T478I . . . PHOX2B 8929 broad.mit.edu 36 4 41444281 41444281 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003924 exon2 c.G271A p.G91S . . . FIP1L1 81608 broad.mit.edu 36 4 54003597 54003597 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030917 exon14 c.G1195A p.A399T . . . KDR 3791 broad.mit.edu 36 4 55659679 55659679 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002253 exon16 c.C2315T p.A772V . . . EPHA5 2044 broad.mit.edu 36 4 66043705 66043705 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon4 c.C1062T p.C354C . . . ZNF595 152687 broad.mit.edu 36 4 77034 77034 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182524 exon4 c.G1639A p.G547S . . . GK2 2712 broad.mit.edu 36 4 80548173 80548173 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033214 exon1 c.C206T p.A69V . . . ANTXR2 118429 broad.mit.edu 36 4 81211775 81211775 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145794 exon2 c.G210A p.A70A . . . FGF5 2250 broad.mit.edu 36 4 81407267 81407267 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033143 exon1 c.G265A p.G89S . . . ACOX3 8310 broad.mit.edu 36 4 8468529 8468529 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon3 c.G242A p.R81Q . . . CPZ 8532 broad.mit.edu 36 4 8659481 8659481 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003652 exon5 c.C991T p.R331C . . . AFF1 4299 broad.mit.edu 36 4 88255436 88255436 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001166693 exon12 c.G2427T p.R809S . . . HERC6 55008 broad.mit.edu 36 4 89553259 89553259 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017912 exon12 c.C1375T p.R459C . . . DRD5 1816 broad.mit.edu 36 4 9393244 9393244 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000798 exon1 c.T493C p.W165R . . . CRMP1 1400 broad.mit.edu 36 4 5874422 5874422 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001313 exon14 c.1685delC p.P562fs . . . EFNA5 1946 broad.mit.edu 36 5 106790901 106790901 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001962 exon2 c.C334T p.L112L . . . PJA2 9867 broad.mit.edu 36 5 108742565 108742565 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014819 exon4 c.T522C p.H174H . . . WDR36 134430 broad.mit.edu 36 5 110467932 110467932 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139281 exon8 c.C1056T p.G352G . . . APC 324 broad.mit.edu 36 5 112156090 112156090 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127510 exon8 c.C694T p.R232X APC,large_intestine,NS,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . DCP2 167227 broad.mit.edu 36 5 112365050 112365050 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152624 exon6 c.C683T p.A228V . . . CTNND2 1501 broad.mit.edu 36 5 11399700 11399700 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon9 c.G1412A p.R471H . . . AP3S1 1176 broad.mit.edu 36 5 115233625 115233625 + Silent SNP A T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001284 exon3 c.A174T p.G58G . . . ALDH7A1 501 broad.mit.edu 36 5 125939033 125939033 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001182 exon7 c.C673T p.L225F . . . FBN2 2201 broad.mit.edu 36 5 127699586 127699586 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon28 c.C3717T p.G1239G . . . RAPGEF6 51735 broad.mit.edu 36 5 130810142 130810142 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164387 exon24 c.C3393T p.L1131L . . . TRPC7 57113 broad.mit.edu 36 5 135720531 135720531 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020389 exon2 c.C444T p.D148D . . . CDC25C 995 broad.mit.edu 36 5 137650790 137650790 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001790 exon11 c.C993T p.R331R . . . DNAH5 1767 broad.mit.edu 36 5 13770543 13770543 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon73 c.C12586A p.Q4196K . . . EGR1 1958 broad.mit.edu 36 5 137831160 137831160 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001964 exon2 c.C1123T p.R375C . . . PCDHA2 56146 broad.mit.edu 36 5 140156663 140156663 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018905 exon1 c.C1930T p.R644X . . . PCDHA3 56145 broad.mit.edu 36 5 140162074 140162074 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031497 exon1 c.G1108A p.A370T . . . PCDHA5 56143 broad.mit.edu 36 5 140182011 140182011 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018908 exon1 c.C467T p.A156V . . . PCDHB6 56130 broad.mit.edu 36 5 140511546 140511546 + Silent SNP C T T rs17844572 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018939 exon1 c.C1524T p.N508N . . . PCDHGB3 56102 broad.mit.edu 36 5 140731706 140731706 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018924 exon1 c.G1561A p.D521N . . . ARAP3 64411 broad.mit.edu 36 5 141014044 141014044 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022481 exon33 c.G4292T p.W1431L . . . ARAP3 64411 broad.mit.edu 36 5 141040174 141040174 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022481 exon2 c.G64A p.A22T . . . SPRY4 81848 broad.mit.edu 36 5 141674132 141674132 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030964 exon3 c.C795T p.S265S . . . RBM27 54439 broad.mit.edu 36 5 145589597 145589597 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018989 exon5 c.C520T p.R174X . . . SLC6A3 6531 broad.mit.edu 36 5 1496096 1496096 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001044 exon2 c.G217A p.V73I . . . SYNPO 11346 broad.mit.edu 36 5 150009911 150009911 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166208 exon3 c.C2613T p.P871P . . . MYOZ3 91977 broad.mit.edu 36 5 150030349 150030349 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122853 exon3 c.C172T p.R58C . . . GPX3 2878 broad.mit.edu 36 5 150387769 150387769 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002084 exon5 c.G566T p.G189V . . . NMUR2 56923 broad.mit.edu 36 5 151764366 151764366 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020167 exon1 c.G502A p.G168S . . . GRIA1 2890 broad.mit.edu 36 5 153162221 153162221 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114183 exon15 c.G2498A p.R833H . . . GEMIN5 25929 broad.mit.edu 36 5 154291311 154291311 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015465 exon5 c.C681T p.N227N . . . FAM71B 153745 broad.mit.edu 36 5 156522401 156522401 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130899 exon2 c.T1453C p.Y485H . . . MYO10 4651 broad.mit.edu 36 5 16734496 16734496 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon32 c.G4306A p.A1436T . . . SLIT3 6586 broad.mit.edu 36 5 168043659 168043659 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003062 exon32 c.C3576T p.N1192N . . . MYO10 4651 broad.mit.edu 36 5 16819264 16819264 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon11 c.G1104T p.Q368H . . . DOCK2 1794 broad.mit.edu 36 5 169416315 169416315 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon43 c.C4345T p.R1449C . . . GABRP 2568 broad.mit.edu 36 5 170154814 170154814 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014211 exon5 c.C265T p.R89X . . . CDHR2 54825 broad.mit.edu 36 5 175948769 175948769 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171976 exon22 c.C2988T p.D996D . . . HK3 3101 broad.mit.edu 36 5 176248031 176248031 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002115 exon10 c.C1212T p.A404A . . . LMAN2 10960 broad.mit.edu 36 5 176693958 176693958 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006816 exon7 c.G843A p.T281T . . . GRM6 2916 broad.mit.edu 36 5 178351649 178351649 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000843 exon2 c.C546T p.S182S . . . ADAMTS2 9509 broad.mit.edu 36 5 178473712 178473712 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014244 exon22 c.G3398A p.R1133Q . . . MGAT4B 11282 broad.mit.edu 36 5 179161703 179161703 + Silent SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_054013 exon1 c.A15C p.A5A . . . C5orf45 51149 broad.mit.edu 36 5 179197450 179197450 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017987 exon5 c.C414T p.S138S . . . CDH18 1016 broad.mit.edu 36 5 19509546 19509546 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004934 exon13 c.A1919G p.K640R . . . PLEKHG4B 153478 broad.mit.edu 36 5 209250 209250 + Missense_Mutation SNP T G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052909 exon8 c.T1205G p.L402R . . . PRDM9 56979 broad.mit.edu 36 5 23544957 23544957 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon2 c.C58T p.R20W . . . DROSHA 29102 broad.mit.edu 36 5 31500163 31500163 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon19 c.A2511G p.E837E . . . PDZD2 23037 broad.mit.edu 36 5 32096867 32096867 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon13 c.G2321A p.R774H . . . PDZD2 23037 broad.mit.edu 36 5 32109869 32109869 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon17 c.C2900T p.A967V . . . BRIX1 55299 broad.mit.edu 36 5 34959045 34959045 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018321 exon8 c.C612T p.H204H . . . HEATR7B2 133558 broad.mit.edu 36 5 41036205 41036205 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173489 exon39 c.C4356T p.C1452C . . . HCN1 348980 broad.mit.edu 36 5 45298225 45298225 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon8 c.C2228T p.P743L . . . MAST4 375449 broad.mit.edu 36 5 66497168 66497168 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon28 c.G5838A p.P1946P . . . MAP1B 4131 broad.mit.edu 36 5 71525796 71525796 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.C858T p.G286G . . . MAP1B 4131 broad.mit.edu 36 5 71528709 71528709 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G3771A p.P1257P . . . BTF3 689 broad.mit.edu 36 5 72834680 72834680 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001207 exon4 c.G367A p.E123K . . . THBS4 7060 broad.mit.edu 36 5 79390299 79390299 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003248 exon5 c.G662A p.R221Q . . . ANKRD34B 340120 broad.mit.edu 36 5 79890863 79890863 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004441 exon5 c.C732T p.H244H . . . SEMA5A 9037 broad.mit.edu 36 5 9107218 9107218 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003966 exon19 c.C2670T p.C890C . . . POU5F2 134187 broad.mit.edu 36 5 93102341 93102341 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153216 exon1 c.T685C p.F229L . . . SPATA9 83890 broad.mit.edu 36 5 95025453 95025453 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031952 exon4 c.C434T p.T145I . . . PCSK1 5122 broad.mit.edu 36 5 95754620 95754620 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177875 exon14 c.C1962T p.Y654Y . . . TAF9 6880 broad.mit.edu 36 5 68697046 68697046 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003187 exon3 c.275delT p.L92fs . . . ATAT1 79969 broad.mit.edu 36 6 30718735 30718736 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190724 exon9 c.831_832insG p.P277fs . . . AIM1 202 broad.mit.edu 36 6 107075455 107075455 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001624 exon2 c.G2455A p.V819I . . . C6orf203 51250 broad.mit.edu 36 6 107467736 107467736 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142470 exon3 c.C94T p.R32X . . . FOXO3 2309 broad.mit.edu 36 6 109091478 109091478 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001455 exon2 c.G749A p.R250Q . . . FOXO3 2309 broad.mit.edu 36 6 109092371 109092371 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001455 exon2 c.C1642T p.R548C . . . HEY2 23493 broad.mit.edu 36 6 126122028 126122028 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012259 exon5 c.C401T p.A134V . . . HEY2 23493 broad.mit.edu 36 6 126122475 126122475 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012259 exon5 c.C848T p.A283V . . . RSPO3 84870 broad.mit.edu 36 6 127511650 127511650 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032784 exon2 c.C262T p.R88X . . . PTPRK 5796 broad.mit.edu 36 6 128430448 128430448 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002844 exon12 c.A2066T p.D689V . . . LAMA2 3908 broad.mit.edu 36 6 129764092 129764092 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon38 c.C5476T p.R1826X . . . LAMA2 3908 broad.mit.edu 36 6 129854877 129854877 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon56 c.T8025C p.P2675P . . . MYB 4602 broad.mit.edu 36 6 135560094 135560094 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161656 exon10 c.C1497T p.D499D . . . AHI1 54806 broad.mit.edu 36 6 135686098 135686098 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017651 exon24 c.G3223A p.G1075R . . . GPR126 57211 broad.mit.edu 36 6 142746668 142746668 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198569 exon6 c.G1217T p.R406M . . . HIVEP2 3097 broad.mit.edu 36 6 143132688 143132688 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.G4881A p.T1627T . . . HIVEP2 3097 broad.mit.edu 36 6 143137054 143137054 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.A515G p.Q172R . . . STX11 8676 broad.mit.edu 36 6 144549936 144549936 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003764 exon2 c.G479A p.R160H . . . KATNA1 11104 broad.mit.edu 36 6 149964564 149964564 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007044 exon6 c.C747T p.G249G . . . RAET1G 353091 broad.mit.edu 36 6 150282578 150282578 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001788 exon2 c.G153A p.A51A . . . SYNE1 23345 broad.mit.edu 36 6 152574391 152574391 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon39 c.G6092A p.R2031H . . . TIAM2 26230 broad.mit.edu 36 6 155492328 155492328 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012454 exon3 c.G279A p.T93T . . . TAGAP 117289 broad.mit.edu 36 6 159376912 159376912 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054114 exon10 c.C2131T p.R711X . . . TAGAP 117289 broad.mit.edu 36 6 159377687 159377687 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054114 exon10 c.G1356A p.P452P . . . IGF2R 3482 broad.mit.edu 36 6 160414295 160414295 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon34 c.T4751C p.V1584A . . . MAP3K4 4216 broad.mit.edu 36 6 161389958 161389958 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon3 c.C664T p.R222C . . . AGPAT4 56895 broad.mit.edu 36 6 161507287 161507287 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020133 exon3 c.C331T p.R111C . . . GMPR 2766 broad.mit.edu 36 6 16394016 16394016 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006877 exon7 c.C668T p.T223M . . . ATXN1 6310 broad.mit.edu 36 6 16435038 16435038 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000332 exon8 c.G1483A p.G495S . . . ATXN1 6310 broad.mit.edu 36 6 16435441 16435441 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000332 exon8 c.C1080T p.H360H . . . FRMD1 79981 broad.mit.edu 36 6 168205351 168205351 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122841 exon8 c.C826T p.R276W . . . DLL1 28514 broad.mit.edu 36 6 170439420 170439420 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005618 exon4 c.C502T p.R168C . . . FAM120B 84498 broad.mit.edu 36 6 170509279 170509279 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032448 exon6 c.C2231T p.A744V . . . KIF13A 63971 broad.mit.edu 36 6 17942249 17942249 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022113 exon12 c.C1188T p.L396L . . . BTN3A1 11119 broad.mit.edu 36 6 26517822 26517822 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145009 exon5 c.C798T p.A266A . . . NQO2 4835 broad.mit.edu 36 6 2957825 2957825 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000904 exon4 c.A221G p.E74G . . . TUBB 203068 broad.mit.edu 36 6 30799430 30799430 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178014 exon4 c.C612T p.N204N . . . TUBB2A 7280 broad.mit.edu 36 6 3099185 3099185 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001069 exon4 c.G1249A p.D417N . . . EHMT2 10919 broad.mit.edu 36 6 31962554 31962554 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025256 exon16 c.C2116T p.R706C . . . SLC39A7 7922 broad.mit.edu 36 6 33279302 33279302 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006979 exon7 c.C1144T p.R382C . . . ITPR3 3710 broad.mit.edu 36 6 33765082 33765082 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002224 exon50 c.C6784T p.R2262C . . . PACSIN1 29993 broad.mit.edu 36 6 34604535 34604535 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020804 exon4 c.C359T p.A120V . . . SRPK1 6732 broad.mit.edu 36 6 35945451 35945451 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003137 exon11 c.C1197A p.S399R . . . FAM50B 26240 broad.mit.edu 36 6 3795706 3795706 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012135 exon2 c.G662A p.R221H . . . PGC 5225 broad.mit.edu 36 6 41820164 41820164 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166424 exon3 c.G277A p.G93S . . . GUCA1B 2979 broad.mit.edu 36 6 42260620 42260620 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002098 exon4 c.C514T p.R172W . . . CUL9 23113 broad.mit.edu 36 6 43292130 43292130 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon31 c.G6193A p.V2065I . . . CLIC5 53405 broad.mit.edu 36 6 45978820 45978820 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016929 exon6 c.C739T p.R247C . . . TDRD6 221400 broad.mit.edu 36 6 46765723 46765723 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010870 exon1 c.T1899C p.I633I . . . BAI3 577 broad.mit.edu 36 6 69722717 69722717 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001704 exon7 c.C1276A p.Q426K . . . C6orf221 154288 broad.mit.edu 36 6 74130163 74130163 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017361 exon3 c.G513A p.P171P . . . COL12A1 1303 broad.mit.edu 36 6 75932127 75932127 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon14 c.C2799T p.R933R . . . FILIP1 27145 broad.mit.edu 36 6 76079038 76079038 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015687 exon5 c.G3230A p.R1077Q . . . MYO6 4646 broad.mit.edu 36 6 76653368 76653368 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004999 exon25 c.C2595T p.P865P . . . PHIP 55023 broad.mit.edu 36 6 79763939 79763939 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017934 exon19 c.C2112T p.N704N . . . TPBG 7162 broad.mit.edu 36 6 83132000 83132000 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166392 exon2 c.G603A p.A201A . . . C6orf165 154313 broad.mit.edu 36 6 88227470 88227470 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031743 exon12 c.T1506C p.A502A . . . BACH2 60468 broad.mit.edu 36 6 90775170 90775170 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021813 exon6 c.G115A p.V39M . . . FUT9 10690 broad.mit.edu 36 6 96758228 96758228 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006581 exon3 c.G476A p.R159H . . . PACRG 135138 broad.mit.edu 36 6 163069268 163069269 + Frame_Shift_Del DEL AA - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 AA AA AA - AA AA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080378 exon2 c.11_12del p.4_4del . . . DLL1 28514 broad.mit.edu 36 6 170434754 170434754 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005618 exon9 c.1538delG p.G513fs . . . BAT5 7920 broad.mit.edu 36 6 31762997 31762997 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001177515 exon18 c.1549delC p.Q517fs . . . HLA-DQB1 3119 broad.mit.edu 36 6 32737848 32737848 + Frame_Shift_Del DEL G - - rs9273971 unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002123 exon3 c.535delC p.L179fs . . . KCTD20 222658 broad.mit.edu 36 6 36560554 36560554 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173562 exon7 c.942delA p.L314fs . . . RIMS1 22999 broad.mit.edu 36 6 73057141 73057141 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014989 exon25 c.3593delC p.A1198fs . . . TMEM168 64418 broad.mit.edu 36 7 112211941 112211942 + Frame_Shift_Ins INS - T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022484 exon2 c.176_177insA p.T59fs . . . KLF14 136259 broad.mit.edu 36 7 130069084 130069085 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138693 exon1 c.317_318insG p.E106fs . . . KCNH2 3757 broad.mit.edu 36 7 150287611 150287612 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000238 exon3 c.454_455insC p.T152fs . . . ZAN 7455 broad.mit.edu 36 7 100199622 100199622 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173059 exon22 c.C4134T p.F1378F . . . EPHB4 2050 broad.mit.edu 36 7 100243042 100243042 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004444 exon13 c.C2215T p.R739X . . . TRIM56 81844 broad.mit.edu 36 7 100518033 100518033 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030961 exon3 c.G720A p.A240A . . . FIS1 51024 broad.mit.edu 36 7 100670155 100670155 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016068 exon4 c.G349T p.A117S . . . CDHR3 222256 broad.mit.edu 36 7 105429152 105429152 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152750 exon7 c.G722A p.R241Q . . . CDHR3 222256 broad.mit.edu 36 7 105440554 105440554 + Silent SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152750 exon9 c.G1065T p.P355P . . . GPR146 115330 broad.mit.edu 36 7 1064472 1064472 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138445 exon1 c.C795T p.P265P . . . DLD 1738 broad.mit.edu 36 7 107343377 107343377 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000108 exon9 c.C875T p.S292F . . . LAMB4 22798 broad.mit.edu 36 7 107458603 107458603 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon32 c.G4876T p.G1626W . . . LAMB4 22798 broad.mit.edu 36 7 107533695 107533695 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon8 c.A673G p.N225D . . . TFEC 22797 broad.mit.edu 36 7 115369323 115369323 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018058 exon6 c.C436T p.R146C . . . CFTR 1080 broad.mit.edu 36 7 117054815 117054815 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000492 exon22 c.C3472T p.R1158X . . . KCND2 3751 broad.mit.edu 36 7 119702378 119702378 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012281 exon1 c.G456A p.A152A . . . AASS 10157 broad.mit.edu 36 7 121560852 121560852 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005763 exon2 c.C165T p.Y55Y . . . TMEM106B 54664 broad.mit.edu 36 7 12235967 12235967 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134232 exon5 c.A579G p.K193K . . . ASB15 142685 broad.mit.edu 36 7 123054421 123054421 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080928 exon7 c.C719T p.A240V . . . FLNC 2318 broad.mit.edu 36 7 128275319 128275319 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001458 exon26 c.C4541T p.T1514M . . . EPHA1 2041 broad.mit.edu 36 7 142808555 142808555 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005232 exon3 c.G416A p.R139Q . . . CUL1 8454 broad.mit.edu 36 7 148127359 148127359 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003592 exon21 c.C2196T p.G732G . . . LOC155060 155060 broad.mit.edu 36 7 148594468 148594468 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195220 exon2 c.C134T p.T45M . . . LOC155060 155060 broad.mit.edu 36 7 148594577 148594577 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195220 exon2 c.C243T p.C81C . . . ZNF746 155061 broad.mit.edu 36 7 148802443 148802443 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163474 exon7 c.A1903G p.S635G . . . INTS1 26173 broad.mit.edu 36 7 1493177 1493177 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080453 exon21 c.C2733T p.C911C . . . INTS1 26173 broad.mit.edu 36 7 1506464 1506464 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080453 exon4 c.C414T p.I138I . . . NUB1 51667 broad.mit.edu 36 7 150696880 150696880 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016118 exon11 c.G1222A p.A408T . . . ANKMY2 57037 broad.mit.edu 36 7 16616791 16616791 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020319 exon6 c.G654T p.L218F . . . AHR 196 broad.mit.edu 36 7 17345167 17345167 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001621 exon10 c.G1193A p.R398Q . . . HDAC9 9734 broad.mit.edu 36 7 18768335 18768335 + Nonsense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon15 c.G2065T p.E689X . . . DNAH11 8701 broad.mit.edu 36 7 21822687 21822687 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon64 c.C10432T p.R3478X . . . STK31 56164 broad.mit.edu 36 7 23775876 23775876 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122833 exon13 c.C1620T p.C540C . . . TTYH3 80727 broad.mit.edu 36 7 2655736 2655736 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025250 exon6 c.G732A p.L244L . . . HOXA6 3203 broad.mit.edu 36 7 27153512 27153512 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024014 exon1 c.G382A p.A128T . . . CARD11 84433 broad.mit.edu 36 7 2943270 2943270 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032415 exon9 c.G1268A p.R423Q . . . FKBP14 55033 broad.mit.edu 36 7 30032490 30032490 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017946 exon1 c.G160T p.G54C . . . ADCYAP1R1 117 broad.mit.edu 36 7 31071020 31071020 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199636 exon3 c.T100C p.C34R . . . AVL9 23080 broad.mit.edu 36 7 32559875 32559875 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015060 exon7 c.C541T p.R181X . . . NPSR1 387129 broad.mit.edu 36 7 34840544 34840544 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207172 exon6 c.G704A p.R235Q . . . AMPH 273 broad.mit.edu 36 7 38469114 38469114 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139316 exon10 c.C874T p.R292W . . . POLM 27434 broad.mit.edu 36 7 44080295 44080295 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013284 exon8 c.C1031T p.A344V . . . ADCY1 107 broad.mit.edu 36 7 45684308 45684308 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021116 exon10 c.G1819A p.E607K . . . GRB10 2887 broad.mit.edu 36 7 50640493 50640493 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001549 exon11 c.C1239T p.G413G . . . ASL 435 broad.mit.edu 36 7 65185587 65185587 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024944 exon5 c.G437A p.R146Q . . . C7orf42 55069 broad.mit.edu 36 7 66055760 66055760 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017994 exon6 c.G893A p.R298H . . . NSUN5 55695 broad.mit.edu 36 7 72356308 72356308 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168347 exon7 c.G789A p.R263R . . . GTF2IRD1 9569 broad.mit.edu 36 7 73571865 73571865 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005685 exon6 c.G796A p.A266T . . . GTF2IRD2 84163 broad.mit.edu 36 7 73850371 73850371 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173537 exon16 c.G1416A p.K472K . . . GLCCI1 113263 broad.mit.edu 36 7 8028693 8028693 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138426 exon3 c.C665T p.A222V . . . SUN1 23353 broad.mit.edu 36 7 849652 849652 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130965 exon5 c.G627A p.S209S . . . FZD1 8321 broad.mit.edu 36 7 90733482 90733482 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003505 exon1 c.G1351A p.A451T . . . AKAP9 10142 broad.mit.edu 36 7 91545084 91545084 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon30 c.A6880G p.T2294A . . . DLX5 1749 broad.mit.edu 36 7 96491734 96491734 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005221 exon1 c.C138T p.D46D . . . TRRAP 8295 broad.mit.edu 36 7 98328068 98328068 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon5 c.T347C p.V116A . . . TRRAP 8295 broad.mit.edu 36 7 98371227 98371227 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon28 c.G4104A p.A1368A . . . ZKSCAN5 23660 broad.mit.edu 36 7 98967050 98967050 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145102 exon7 c.C1762A p.Q588K . . . ZSCAN21 7589 broad.mit.edu 36 7 99499670 99499670 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145914 exon4 c.G916A p.V306M . . . PLOD3 8985 broad.mit.edu 36 7 100642647 100642647 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001084 exon9 c.889delC p.R297fs . . . CUX1 1523 broad.mit.edu 36 7 101632024 101632024 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181552 exon18 c.2727delC p.S909fs . . . SMO 6608 broad.mit.edu 36 7 128639240 128639240 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005631 exon12 c.2076delC p.H692fs . . . PAXIP1 22976 broad.mit.edu 36 7 154391068 154391068 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007349 exon7 c.1776delT p.F592fs . . . CDCA7L 55536 broad.mit.edu 36 7 21909240 21909240 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127371 exon8 c.1077delC p.P359fs . . . TRIL 9865 broad.mit.edu 36 7 28963007 28963007 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014817 exon1 c.1181delC p.P394fs . . . SLC29A4 222962 broad.mit.edu 36 7 5297338 5297340 + In_Frame_Del DEL TCC - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 TCC TCC TCC - TCC TCC Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153247 exon4 c.359_361del p.120_121del . . . ZNF395 55893 broad.mit.edu 36 8 28266727 28266728 + Frame_Shift_Ins INS - G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018660 exon5 c.701_702insC p.H234fs . . . VPS13B 157680 broad.mit.edu 36 8 100899858 100899858 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon46 c.C8365T p.P2789S . . . UBR5 51366 broad.mit.edu 36 8 103360541 103360541 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015902 exon43 c.C6073T p.R2025C . . . RP1L1 94137 broad.mit.edu 36 8 10507824 10507824 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon4 c.C1194T p.G398G . . . PINX1 54984 broad.mit.edu 36 8 10660834 10660834 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017884 exon7 c.C474T p.G158G . . . XKR6 286046 broad.mit.edu 36 8 10819618 10819618 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173683 exon2 c.C897T p.S299S . . . TMEM74 157753 broad.mit.edu 36 8 109865963 109865963 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153015 exon2 c.G541A p.A181T . . . CSMD3 114788 broad.mit.edu 36 8 114360102 114360102 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon3 c.G409T p.G137X . . . TRPS1 7227 broad.mit.edu 36 8 116496221 116496221 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014112 exon7 c.C3091T p.Q1031X . . . TNFRSF11B 4982 broad.mit.edu 36 8 120014565 120014565 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002546 exon2 c.C186T p.C62C . . . DLC1 10395 broad.mit.edu 36 8 12988276 12988276 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon17 c.G4360A p.A1454T . . . DLC1 10395 broad.mit.edu 36 8 13401631 13401631 + Silent SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.A321G p.L107L . . . TG 7038 broad.mit.edu 36 8 134064777 134064777 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon35 c.T6200A p.I2067N . . . ST3GAL1 6482 broad.mit.edu 36 8 134541345 134541345 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173344 exon10 c.C867T p.F289F . . . FAM135B 51059 broad.mit.edu 36 8 139449376 139449376 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon2 c.G33A p.S11S . . . DENND3 22898 broad.mit.edu 36 8 142230928 142230928 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014957 exon7 c.G644A p.R215Q . . . CYP11B1 1584 broad.mit.edu 36 8 143952814 143952814 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001026213 exon8 c.C1291A p.L431I . . . SCRIB 23513 broad.mit.edu 36 8 144958009 144958009 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015356 exon23 c.G3210A p.T1070T . . . CPSF1 29894 broad.mit.edu 36 8 145591318 145591318 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013291 exon28 c.G3157A p.E1053K . . . MTUS1 57509 broad.mit.edu 36 8 17623558 17623558 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001931 exon1 c.G133A p.V45M . . . MYOM2 9172 broad.mit.edu 36 8 2004978 2004978 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003970 exon8 c.C748T p.R250W . . . PHYHIP 9796 broad.mit.edu 36 8 22135085 22135085 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014759 exon5 c.C719T p.A240V . . . PIWIL2 55124 broad.mit.edu 36 8 22221509 22221509 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018068 exon14 c.G1664A p.R555H . . . LOXL2 4017 broad.mit.edu 36 8 23247068 23247068 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002318 exon5 c.C757T p.R253W . . . CDCA2 157313 broad.mit.edu 36 8 25420560 25420560 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152562 exon15 c.G2461A p.V821I . . . CHRNA2 1135 broad.mit.edu 36 8 27380764 27380764 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000742 exon5 c.C348T p.S116S . . . EXTL3 2137 broad.mit.edu 36 8 28629730 28629730 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001440 exon3 c.G235A p.V79M . . . EXTL3 2137 broad.mit.edu 36 8 28630536 28630536 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001440 exon3 c.C1041T p.G347G . . . TEX15 56154 broad.mit.edu 36 8 30820000 30820000 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.C6076T p.Q2026X . . . FGFR1 2260 broad.mit.edu 36 8 38406412 38406412 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174065 exon3 c.C303T p.C101C . . . FGFR1 2260 broad.mit.edu 36 8 38406538 38406538 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174065 exon3 c.C177T p.D59D . . . MYST3 7994 broad.mit.edu 36 8 41953976 41953976 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099413 exon8 c.G1070A p.R357Q . . . IKBKB 3551 broad.mit.edu 36 8 42285642 42285642 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190722 exon8 c.G634A p.A212T . . . DKK4 27121 broad.mit.edu 36 8 42350842 42350842 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014420 exon4 c.G608A p.R203Q . . . SLC20A2 6575 broad.mit.edu 36 8 42413677 42413677 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006749 exon8 c.G1510A p.G504S . . . PRKDC 5591 broad.mit.edu 36 8 48876089 48876089 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon71 c.G9933A p.T3311T . . . PRKDC 5591 broad.mit.edu 36 8 48963722 48963722 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon34 c.G4322A p.R1441H . . . ST18 9705 broad.mit.edu 36 8 53191515 53191515 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014682 exon25 c.G2876A p.S959N . . . NSMAF 8439 broad.mit.edu 36 8 59684726 59684726 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003580 exon10 c.C678T p.N226N . . . CYP7B1 9420 broad.mit.edu 36 8 65690990 65690990 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004820 exon3 c.A662G p.D221G . . . MYBL1 4603 broad.mit.edu 36 8 67670506 67670506 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080416 exon6 c.C553T p.R185X . . . SULF1 23213 broad.mit.edu 36 8 70702621 70702621 + Missense_Mutation SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128205 exon17 c.A2008G p.R670G . . . NCOA2 10499 broad.mit.edu 36 8 71237550 71237550 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon9 c.C926T p.A309V . . . KCNB2 9312 broad.mit.edu 36 8 74010870 74010870 + Silent SNP A G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004770 exon3 c.A726G p.A242A . . . STAU2 27067 broad.mit.edu 36 8 74690554 74690554 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164383 exon3 c.G72A p.K24K . . . ZFHX4 79776 broad.mit.edu 36 8 77924455 77924455 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon8 c.G3798A p.T1266T . . . HEY1 23462 broad.mit.edu 36 8 80840548 80840548 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012258 exon5 c.G345A p.A115A . . . TSPYL5 85453 broad.mit.edu 36 8 98358549 98358549 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033512 exon1 c.C700T p.R234X . . . MATN2 4147 broad.mit.edu 36 8 99012596 99012596 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030583 exon3 c.C382T p.R128W . . . MATN2 4147 broad.mit.edu 36 8 99088947 99088947 + Silent SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030583 exon10 c.C1515A p.S505S . . . MATN2 4147 broad.mit.edu 36 8 99099511 99099511 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030583 exon12 c.C1810T p.R604C . . . ADAM18 8749 broad.mit.edu 36 8 39613977 39613977 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014237 exon8 c.626delA p.Q209fs . . . SYK 6850 broad.mit.edu 36 9 92647609 92647610 + Frame_Shift_Ins INS - A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174167 exon3 c.490_491insA p.E164fs . . . GABBR2 9568 broad.mit.edu 36 9 100256085 100256085 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005458 exon7 c.C1235T p.T412M . . . GABBR2 9568 broad.mit.edu 36 9 100344127 100344127 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005458 exon3 c.C479T p.T160M . . . ANKS6 203286 broad.mit.edu 36 9 100592463 100592463 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173551 exon2 c.G606A p.G202G . . . TGFBR1 7046 broad.mit.edu 36 9 100934770 100934770 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004612 exon3 c.C502T p.R168C . . . TEX10 54881 broad.mit.edu 36 9 102142406 102142406 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017746 exon5 c.G1204A p.V402I . . . MURC 347273 broad.mit.edu 36 9 102380302 102380302 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018116 exon1 c.C56T p.S19L . . . GRIN3A 116443 broad.mit.edu 36 9 103415592 103415592 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133445 exon6 c.G2653A p.A885T . . . OR13C3 138803 broad.mit.edu 36 9 106338373 106338373 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001961 exon1 c.C543T p.S181S . . . ABCA1 19 broad.mit.edu 36 9 106621742 106621742 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005502 exon22 c.G3187A p.V1063M . . . SVEP1 79987 broad.mit.edu 36 9 112291819 112291819 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon9 c.C1862T p.A621V . . . MUSK 4593 broad.mit.edu 36 9 112536390 112536390 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166280 exon7 c.G697A p.V233I . . . ALAD 210 broad.mit.edu 36 9 115191874 115191874 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000031 exon8 c.G626A p.R209Q . . . PAPPA 5069 broad.mit.edu 36 9 118029640 118029640 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002581 exon6 c.C2221T p.R741C . . . ASTN2 23245 broad.mit.edu 36 9 118453649 118453649 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198186 exon2 c.C354T p.I118I . . . OR5C1 392391 broad.mit.edu 36 9 124591737 124591737 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001923 exon1 c.C705T p.V235V . . . DENND1A 57706 broad.mit.edu 36 9 125183610 125183610 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020946 exon22 c.C2952T p.D984D . . . OLFML2A 169611 broad.mit.edu 36 9 126589192 126589192 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182487 exon2 c.C208T p.R70C . . . SLC2A8 29988 broad.mit.edu 36 9 129207027 129207027 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014580 exon8 c.G1086T p.Q362H . . . STXBP1 6812 broad.mit.edu 36 9 129467424 129467424 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003165 exon8 c.T656C p.M219T . . . NAIF1 203245 broad.mit.edu 36 9 129865739 129865739 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197956 exon2 c.G773A p.R258H . . . TRUB2 26995 broad.mit.edu 36 9 130123807 130123807 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015679 exon2 c.G133A p.A45T . . . LRRC8A 56262 broad.mit.edu 36 9 130718308 130718308 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019594 exon4 c.C2270T p.T757M . . . DOLK 22845 broad.mit.edu 36 9 130747977 130747977 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014908 exon1 c.C1427T p.T476I . . . BAT2L1 84726 broad.mit.edu 36 9 133348012 133348012 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013318 exon21 c.C5270T p.A1757V . . . VAV2 7410 broad.mit.edu 36 9 135632353 135632353 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134398 exon23 c.G1944T p.K648N . . . OBP2A 29991 broad.mit.edu 36 9 137578462 137578462 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014582 exon2 c.C90T p.Y30Y . . . TRAF2 7186 broad.mit.edu 36 9 138938183 138938183 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021138 exon10 c.C1197T p.D399D . . . FBXW5 54461 broad.mit.edu 36 9 138957163 138957163 + Silent SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018998 exon4 c.C405A p.P135P . . . NFIB 4781 broad.mit.edu 36 9 14297164 14297164 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190738 exon2 c.G464A p.R155H . . . KCNV2 169522 broad.mit.edu 36 9 2708017 2708017 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133497 exon1 c.C278T p.P93L . . . TLN1 7094 broad.mit.edu 36 9 35696487 35696487 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006289 exon39 c.C5150T p.A1717V . . . TMEM8B 51754 broad.mit.edu 36 9 35837067 35837067 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016446 exon11 c.G894A p.T298T . . . FBXO10 26267 broad.mit.edu 36 9 37527831 37527831 + Missense_Mutation SNP T C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon3 c.A695G p.H232R . . . FRMPD1 22844 broad.mit.edu 36 9 37730286 37730286 + Silent SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014907 exon15 c.C1761T p.S587S . . . GLIS3 169792 broad.mit.edu 36 9 3819457 3819457 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152629 exon9 c.C2044T p.H682Y . . . ALDH1B1 219 broad.mit.edu 36 9 38386925 38386925 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000692 exon2 c.C1180T p.R394C . . . SLC1A1 6505 broad.mit.edu 36 9 4551493 4551493 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004170 exon3 c.C277T p.R93C . . . SLC1A1 6505 broad.mit.edu 36 9 4573132 4573132 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004170 exon11 c.G1288A p.A430T . . . RLN2 6019 broad.mit.edu 36 9 5294494 5294494 + Missense_Mutation SNP C G G novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134441 exon1 c.G87C p.E29D . . . PRKACG 5568 broad.mit.edu 36 9 70818726 70818726 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002732 exon1 c.G103A p.A35T . . . FAM189A2 9413 broad.mit.edu 36 9 71193151 71193151 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004816 exon10 c.G1114A p.E372K . . . TRPM6 140803 broad.mit.edu 36 9 76567350 76567350 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177310 exon26 c.C4042T p.R1348X . . . TRPM6 140803 broad.mit.edu 36 9 76587525 76587525 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177310 exon22 c.G2969A p.R990H . . . TRPM6 140803 broad.mit.edu 36 9 76638771 76638771 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177310 exon6 c.G617A p.G206D . . . PCSK5 5125 broad.mit.edu 36 9 77979794 77979794 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190482 exon14 c.C1829T p.P610L . . . PRUNE2 158471 broad.mit.edu 36 9 78460193 78460193 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon10 c.C8322T p.G2774G . . . OMD 4958 broad.mit.edu 36 9 94217379 94217379 + Missense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005014 exon3 c.G1142T p.R381M . . . NCBP1 4686 broad.mit.edu 36 9 99450130 99450130 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002486 exon8 c.C701T p.A234V . . . OR13F1 138805 broad.mit.edu 36 9 106307268 106307268 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004485 exon1 c.904delA p.K302fs . . . PHF19 26147 broad.mit.edu 36 9 122671899 122671901 + In_Frame_Del DEL GGA - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 GGA GGA GGA - GGA GGA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009936 exon5 c.508_510del p.170_170del . . . C9orf98 158067 broad.mit.edu 36 9 134743428 134743428 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152572 exon1 c.36delC p.P12fs . . . KCNT1 57582 broad.mit.edu 36 9 137802640 137802642 + In_Frame_Del DEL AGG - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 AGG AGG AGG - AGG AGG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020822 exon18 c.1886_1888del p.629_630del . . . C9orf11 54586 broad.mit.edu 36 9 27287005 27287005 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161585 exon1 c.49delA p.S17fs . . . CPXCR1 53336 broad.mit.edu 36 X 87895351 87895352 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033048 exon3 c.280_281insC p.T94fs . . . NXF5 55998 broad.mit.edu 36 X 100983170 100983170 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032946 exon6 c.G257A p.S86N . . . CLCN4 1183 broad.mit.edu 36 X 10148908 10148908 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001830 exon12 c.C2183T p.T728M . . . TEX13A 56157 broad.mit.edu 36 X 104351374 104351374 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031274 exon2 c.C364T p.R122C . . . CHRDL1 91851 broad.mit.edu 36 X 109851303 109851303 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143981 exon5 c.G413A p.R138Q . . . FRMPD4 9758 broad.mit.edu 36 X 12644356 12644356 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014728 exon15 c.G1857T p.E619D . . . SAGE1 55511 broad.mit.edu 36 X 134817646 134817646 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018666 exon10 c.C1139T p.A380V . . . MAP7D3 79649 broad.mit.edu 36 X 135141997 135141997 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173517 exon7 c.G680A p.R227H . . . GLRA2 2742 broad.mit.edu 36 X 14535183 14535183 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001118885 exon7 c.C587T p.T196M . . . FANCB 2187 broad.mit.edu 36 X 14792671 14792671 + Nonsense_Mutation SNP C A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018113 exon3 c.G883T p.G295X . . . MAMLD1 10046 broad.mit.edu 36 X 149389430 149389430 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177466 exon2 c.G852A p.A284A . . . MAGEA12 4111 broad.mit.edu 36 X 151650671 151650671 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005367 exon2 c.C786T p.P262P . . . BGN 633 broad.mit.edu 36 X 152424540 152424540 + Missense_Mutation SNP T A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001711 exon4 c.T377A p.I126N . . . NHS 4810 broad.mit.edu 36 X 17654937 17654937 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon7 c.G2259A p.S753S . . . ZNF645 158506 broad.mit.edu 36 X 22201878 22201878 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152577 exon1 c.G849A p.A283A . . . MXRA5 25878 broad.mit.edu 36 X 3245154 3245154 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon6 c.G6568A p.A2190T . . . MXRA5 25878 broad.mit.edu 36 X 3245540 3245540 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon6 c.C6182T p.P2061L . . . MXRA5 25878 broad.mit.edu 36 X 3251421 3251421 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon5 c.C2305T p.R769X . . . KCND1 3750 broad.mit.edu 36 X 48711417 48711417 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004979 exon1 c.C206T p.S69L . . . PRICKLE3 4007 broad.mit.edu 36 X 48919280 48919280 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006150 exon9 c.C1534T p.R512C . . . DGKK 139189 broad.mit.edu 36 X 50160856 50160856 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013742 exon8 c.C1330T p.R444W . . . IQSEC2 23096 broad.mit.edu 36 X 53300630 53300630 + Missense_Mutation SNP G T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111125 exon4 c.C1208A p.P403H . . . ZXDB 158586 broad.mit.edu 36 X 57636331 57636331 + Silent SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007157 exon1 c.G1125A p.T375T . . . MSN 4478 broad.mit.edu 36 X 64866277 64866277 + Missense_Mutation SNP G A A novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002444 exon4 c.G445A p.G149R . . . KIAA2022 340533 broad.mit.edu 36 X 73876796 73876796 + Missense_Mutation SNP C T T novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008537 exon3 c.G4321A p.G1441R . . . AMOT 154796 broad.mit.edu 36 X 111952295 111952295 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113490 exon1 c.716delC p.P239fs . . . GABRQ 55879 broad.mit.edu 36 X 151571718 151571718 + Frame_Shift_Del DEL C - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018558 exon9 c.1217delC p.A406fs . . . CASK 8573 broad.mit.edu 36 X 41313928 41313928 + Frame_Shift_Del DEL T - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126054 exon16 c.1519delA p.M507X . . . FAM123B 139285 broad.mit.edu 36 X 63329373 63329373 + Frame_Shift_Del DEL A - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.519delT p.F173fs . . . TAZ 6901 broad.mit.edu 36 X 153301668 153301668 + Frame_Shift_Del DEL G - - novel unknown TCGA-AG-A02N-01A-11W-A096-10 TCGA-AG-A02N-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . .