Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
FRMPD3	0	genome.wustl.edu	37	X	106846478	106846480	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-DX-A6YU-01A-12D-A33E-09	TCGA-DX-A6YU-10A-01D-A33H-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ace05a35-d1b2-4aa7-9c34-05b79d14a493	da7c4573-b81f-450f-9aeb-48c58a975706	X	106846478	106846480	CAG	-	DEL	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	in_frame_del	c.5308_5310	p.Q1773in_frame_del	0.517:0.515:0.516	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234	tier1			78	0	0.00	24	3	11.11	11	0	0.00	9	0	0.00
TRAF7	0	genome.wustl.edu	37	16	2220714	2220716	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-A6YU-01A-12D-A33E-09	TCGA-DX-A6YU-10A-01D-A33H-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ace05a35-d1b2-4aa7-9c34-05b79d14a493	da7c4573-b81f-450f-9aeb-48c58a975706	16	2220714	2220716	GAG	-	DEL	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	in_frame_del	c.331_333	p.E114in_frame_del	1.000:1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	tier1			34	0	0.00	17	3	15.00	6	0	0.00	7	0	0.00
PPP1R12C	0	genome.wustl.edu	37	19	55610363	55610363	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6YU-01A-12D-A33E-09	TCGA-DX-A6YU-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ace05a35-d1b2-4aa7-9c34-05b79d14a493	da7c4573-b81f-450f-9aeb-48c58a975706	19	55610363	55610363	G	C	SNP	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	missense	c.832	p.L278V	0.997	pirsf_Pase-1_reg_su_12A/B/C_euk,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503	tier1	-	-	65	0	0.00	40	6	13.04	0	0	0.00	2	0	0.00
ZNF208	0	genome.wustl.edu	37	19	22156134	22156134	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6YU-01A-12D-A33E-09	TCGA-DX-A6YU-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ace05a35-d1b2-4aa7-9c34-05b79d14a493	da7c4573-b81f-450f-9aeb-48c58a975706	19	22156134	22156134	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1702	p.L568I	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	tier1	-	-	36	0	0.00	35	8	18.60	3	0	0.00	1	0	0.00
OR1D2	0	genome.wustl.edu	37	17	2996238	2996238	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A6YU-01A-12D-A33E-09	TCGA-DX-A6YU-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ace05a35-d1b2-4aa7-9c34-05b79d14a493	da7c4573-b81f-450f-9aeb-48c58a975706	17	2996238	2996238	G	T	SNP	OR1D2	ENST00000331459	human	ensembl	74_37	-1	known	nonsense	c.53	p.S18*	0.012	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1D2	HGNC	ENSG00000184166	tier1	-	-	49	0	0.00	40	4	9.09	102	0	0.00	78	2	2.50