Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
KIF27	0	genome.wustl.edu	37	9	86518547	86518547	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	86518547	86518547	C	T	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	missense	c.886	p.A296T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115	tier1	-	-	35	0	0.00	15	14	48.28	79	0	0.00	40	32	44.44
CNTLN	0	genome.wustl.edu	37	9	17394809	17394809	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	17394809	17394809	A	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.2357	p.N786I	0.998	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	tier1	-	-	40	0	0.00	18	11	37.93	82	1	1.20	48	25	34.25
VAV2	0	genome.wustl.edu	37	9	136726433	136726433	+	R	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	136726433	136726433	G	T	SNP	VAV2	ENST00000486113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	VAV2	HGNC	ENSG00000160293	tier1	-	-	44	0	0.00	33	5	13.16	67	0	0.00	77	6	7.23
MEG3	0	genome.wustl.edu	37	14	101301191	101301191	+	R	SNP	G	G	C			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	14	101301191	101301191	G	C	SNP	MEG3	ENST00000398461	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MEG3	HGNC	ENSG00000214548	tier1	-	-	15	0	0.00	5	8	61.54	110	0	0.00	65	6	8.45
ENSG00000267075	0	genome.wustl.edu	37	17	20451533	20451533	+	R	SNP	G	G	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	17	20451533	20451533	G	T	SNP	ENSG00000267075	ENST00000591705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	RP11-434D2.3	Clone_based_vega_gene	ENSG00000267075	tier1	-	-	32	0	0.00	18	18	50.00	37	1	2.63	26	17	39.53
ABL1	0	genome.wustl.edu	37	9	133738153	133738156	+	Frame_Shift_Del	DEL	TACG	TACG	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	TACG	TACG	TACG	-	TACG	TACG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	9	133738153	133738156	TACG	-	DEL	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	frame_shift_del	c.610_613	p.Y204fs	1.000:1.000:1.000:1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	tier1			22	0	0.00	11	10	47.62	29	1	3.33	29	29	50.00
MT-ND5	0	genome.wustl.edu	37	MT	13589	13589	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	MT	13589	13589	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1253	p.L418P	NULL	tigrfam_DHpl_OxRdtase_5	pfam_DH_UbQ/plastoQ_OxRdtase,pfam_DH_DH_su5_C,pfam_DH_UbQ_OxRdtase_chain5/L_N,tigrfam_DHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	32	0	0.00	7	2	22.22	5	0	0.00	0	0	0.00
ATXN2	0	genome.wustl.edu	37	12	112036781	112036785	+	Frame_Shift_Del	DEL	GTTGC	GTTGC	-			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	GTTGC	GTTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	12	112036781	112036785	GTTGC	-	DEL	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	frame_shift_del	c.538_534	p.Q179fs	0.009:0.008:0.017:0.025:0.032	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
RNU6-172P	0	genome.wustl.edu	37	12	102190269	102190270	+	R	INS	-	-	T			TCGA-DX-AB3C-01A-11D-A417-09	TCGA-DX-AB3C-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7764d76b-a6eb-45bc-b804-abb1baebbbf4	4f3fe851-ad44-4399-88d5-eb4247f4e04b	12	102190269	102190270	-	T	INS	RNU6-172P	ENST00000411000	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	RNU6-172P	HGNC	ENSG00000222932	tier1			13	0	0.00	7	3	30.00	37	0	0.00	51	3	5.56