Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier dbSNP GMAF n_ref_count n_alt_count normal_vaf t_ref_count t_alt_count tumor_vaf n_ref_count_val n_alt_count_val normal_vaf_val t_ref_count_val t_alt_count_val tumor_vaf_val ABCA10 0 genome.wustl.edu 37 17 67215820 67215820 + Missense_Mutation SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 17 67215820 67215820 C T SNP ABCA10 ENST00000269081 human ensembl 74_37 -1 known missense c.396 p.M132I 0.000 NULL pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCA10 HGNC ENSG00000154263 tier1 - - 41 0 0.00 39 13 25.00 57 0 0.00 79 54 40.30 HERC6 0 genome.wustl.edu 37 4 89338623 89338623 + Silent SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 4 89338623 89338623 C T SNP HERC6 ENST00000264346 human ensembl 74_37 +1 known silent c.1605 p.I535 1.000 NULL pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens - no_errors HERC6 HGNC ENSG00000138642 tier1 - - 68 0 0.00 45 30 40.00 53 0 0.00 42 20 32.26 PCLO 0 genome.wustl.edu 37 7 82583496 82583496 + Missense_Mutation SNP C C A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 7 82583496 82583496 C A SNP PCLO ENST00000333891 human ensembl 74_37 -1 known missense c.6773 p.S2258I 0.000 NULL pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ - no_errors PCLO HGNC ENSG00000186472 tier1 - - 48 0 0.00 19 21 52.50 57 0 0.00 48 48 50.00 LAMC3 0 genome.wustl.edu 37 9 133967191 133967191 + R SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 9 133967191 133967191 C T SNP LAMC3 ENST00000462567 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors LAMC3 HGNC ENSG00000050555 tier1 - - 107 0 0.00 49 33 40.24 50 0 0.00 22 7 24.14 SACS 0 genome.wustl.edu 37 13 23906926 23906926 + Missense_Mutation SNP G G C TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 13 23906926 23906926 G C SNP SACS ENST00000382292 human ensembl 74_37 -1 known missense c.11089 p.L3697V 0.713 NULL pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup - no_errors SACS HGNC ENSG00000151835 tier1 - - 38 0 0.00 43 14 24.56 95 0 0.00 140 35 19.89 C12orf55 0 genome.wustl.edu 37 12 96897758 96897758 + Missense_Mutation SNP A A C TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 12 96897758 96897758 A C SNP C12orf55 ENST00000524981 human ensembl 74_37 +1 putative missense c.518 p.K173T 0.988 NULL superfamily_Fibronectin_type3 - no_errors C12orf55 HGNC ENSG00000188596 tier1 - - 75 0 0.00 44 31 41.33 92 0 0.00 96 61 38.85 PRT1 0 genome.wustl.edu 37 8 144658831 144658831 + Missense_Mutation SNP G G T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 8 144658831 144658831 G T SNP PRT1 ENST00000276844 human ensembl 74_37 -1 known missense c.866 p.T289N 0.999 pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB - no_errors PRT1 HGNC ENSG00000147813 tier1 - - 19 0 0.00 17 12 41.38 43 0 0.00 18 4 18.18 NCKAP5 0 genome.wustl.edu 37 2 133542322 133542322 + Missense_Mutation SNP C C A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 2 133542322 133542322 C A SNP NCKAP5 ENST00000317721 human ensembl 74_37 -1 known missense c.2062 p.V688F 0.217 NULL NULL - no_errors NCKAP5 HGNC ENSG00000176771 tier1 - - 52 0 0.00 26 30 53.57 107 0 0.00 49 45 47.37 LRRC31 0 genome.wustl.edu 37 3 169571430 169571430 + R SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 3 169571430 169571430 C T SNP LRRC31 ENST00000397805 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors LRRC31 HGNC ENSG00000114248 tier1 - - 47 0 0.00 38 29 43.28 126 0 0.00 85 62 42.18 LAMA1 0 genome.wustl.edu 37 18 7050762 7050762 + Silent SNP G G T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 18 7050762 7050762 G T SNP LAMA1 ENST00000389658 human ensembl 74_37 -1 known silent c.519 p.T173 0.000 pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N - no_errors LAMA1 HGNC ENSG00000101680 tier1 - - 85 0 0.00 41 27 39.71 82 0 0.00 48 29 37.18 MAP1B 0 genome.wustl.edu 37 5 71489794 71489794 + Missense_Mutation SNP C C A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 5 71489794 71489794 C A SNP MAP1B ENST00000296755 human ensembl 74_37 +1 known missense c.612 p.H204Q 1.000 NULL pfam_MAP1B_neuraxin - no_errors MAP1B HGNC ENSG00000131711 tier1 - - 63 0 0.00 42 29 40.85 86 0 0.00 42 48 53.33 FMOD 0 genome.wustl.edu 37 1 203311601 203311601 + Missense_Mutation SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 1 203311601 203311601 C T SNP FMOD ENST00000354955 human ensembl 74_37 -1 known missense c.1001 p.C334Y 1.000 pfam_Leu-rich_rpt pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp - no_errors FMOD HGNC ENSG00000122176 tier1 - - 19 0 0.00 7 8 53.33 53 0 0.00 23 28 54.90 SOX5 0 genome.wustl.edu 37 12 23998945 23998945 + Missense_Mutation SNP C C A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 12 23998945 23998945 C A SNP SOX5 ENST00000451604 human ensembl 74_37 -1 known missense c.453 p.M151I 1.000 NULL pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom - no_errors SOX5 HGNC ENSG00000134532 tier1 - - 45 0 0.00 25 5 16.67 58 0 0.00 44 13 22.81 ARAP2 0 genome.wustl.edu 37 4 36069535 36069535 + Missense_Mutation SNP C C A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 4 36069535 36069535 C A SNP ARAP2 ENST00000303965 human ensembl 74_37 -1 known missense c.5109 p.L1703F 0.000 NULL pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP - no_errors ARAP2 HGNC ENSG00000047365 tier1 - - 46 0 0.00 17 25 59.52 48 0 0.00 53 45 45.92 TCEB3 0 genome.wustl.edu 37 1 24080854 24080854 + Silent SNP A A G TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 1 24080854 24080854 A G SNP TCEB3 ENST00000418390 human ensembl 74_37 +1 known silent c.1773 p.S591 0.831 NULL pfam_R_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom - no_errors TCEB3 HGNC ENSG00000011007 tier1 - - 39 0 0.00 34 18 34.62 116 0 0.00 68 28 29.17 PRODH 0 genome.wustl.edu 37 22 18904407 18904407 + Missense_Mutation SNP G G A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 22 18904407 18904407 G A SNP PRODH ENST00000357068 human ensembl 74_37 -1 known missense c.1522 p.R508C 0.031 pfam_Proline_DH pfam_Proline_DH - no_errors PRODH HGNC ENSG00000100033 tier1 - - 49 0 0.00 18 13 41.94 24 0 0.00 11 15 57.69 RNF149 0 genome.wustl.edu 37 2 101893740 101893740 + Missense_Mutation SNP G G T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 2 101893740 101893740 G T SNP RNF149 ENST00000295317 human ensembl 74_37 -1 known missense c.1163 p.A388D 0.002 NULL pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF149 HGNC ENSG00000163162 tier1 - - 73 0 0.00 43 9 17.31 53 1 1.85 44 9 16.98 RBM15 0 genome.wustl.edu 37 1 110883188 110883188 + Missense_Mutation SNP G G C TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 1 110883188 110883188 G C SNP RBM15 ENST00000369784 human ensembl 74_37 +1 known missense c.1161 p.E387D 0.989 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom - no_errors RBM15 HGNC ENSG00000162775 tier1 - - 47 0 0.00 29 16 35.56 78 0 0.00 44 34 43.04 DH10 0 genome.wustl.edu 37 12 124298365 124298365 + Missense_Mutation SNP C C A TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 12 124298365 124298365 C A SNP DH10 ENST00000409039 human ensembl 74_37 +1 known missense c.3332 p.T1111K 0.945 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase - no_errors DH10 HGNC ENSG00000197653 tier1 - - 93 0 0.00 54 18 25.00 109 0 0.00 79 51 39.23 PHACTR1 0 genome.wustl.edu 37 6 13182854 13182854 + Frame_Shift_Del DEL C C - TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C - C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 6 13182854 13182854 C - DEL PHACTR1 ENST00000379350 human ensembl 74_37 +1 known frame_shift_del c.600 p.P201fs 0.996 NULL pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat - no_errors PHACTR1 HGNC ENSG00000112137 tier1 33 0 0.00 34 15 30.61 66 0 0.00 26 16 38.10 FRMD6 0 genome.wustl.edu 37 14 52156445 52156445 + R SNP T T G TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 T T T G T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 14 52156445 52156445 T G SNP FRMD6 ENST00000556137 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors FRMD6 HGNC ENSG00000139926 tier1 - - 78 0 0.00 33 37 52.86 9 0 0.00 6 4 40.00 HTR5A 0 genome.wustl.edu 37 7 154863029 154863029 + Silent SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 7 154863029 154863029 C T SNP HTR5A ENST00000287907 human ensembl 74_37 +1 known silent c.420 p.Y140 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt - no_errors HTR5A HGNC ENSG00000157219 tier1 - - 36 0 0.00 12 20 62.50 26 0 0.00 9 6 40.00 RBMXL3 0 genome.wustl.edu 37 X 114426788 114426788 + Silent SNP C C T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 X 114426788 114426788 C T SNP RBMXL3 ENST00000424776 human ensembl 74_37 +1 known silent c.2784 p.R928 0.374 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBMXL3 HGNC ENSG00000175718 tier1 - - 84 0 0.00 43 28 38.89 13 0 0.00 9 6 40.00 PRKACA 0 genome.wustl.edu 37 19 14211650 14211650 + Missense_Mutation SNP A A T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 19 14211650 14211650 A T SNP PRKACA ENST00000308677 human ensembl 74_37 -1 known missense c.407 p.I136N 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors PRKACA HGNC ENSG00000072062 tier1 - - 69 0 0.00 58 7 10.77 60 0 0.00 51 4 7.27 USP38 0 genome.wustl.edu 37 4 144107117 144107117 + Missense_Mutation SNP G G C TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 4 144107117 144107117 G C SNP USP38 ENST00000307017 human ensembl 74_37 +1 known missense c.514 p.V172L 1.000 NULL pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 - no_errors USP38 HGNC ENSG00000170185 tier1 - - 26 0 0.00 31 4 11.43 122 0 0.00 99 5 4.81 ING1 0 genome.wustl.edu 37 13 111371715 111371715 + Silent SNP G G T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 13 111371715 111371715 G T SNP ING1 ENST00000375774 human ensembl 74_37 +1 known silent c.705 p.V235 0.688 NULL pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger - no_errors ING1 HGNC ENSG00000153487 tier1 - - 73 0 0.00 43 4 8.51 19 0 0.00 2 0 0.00 ENSG00000221388 0 genome.wustl.edu 37 2 213628318 213628325 + R DEL TGTGTGTG TGTGTGTG - TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 TGTGTGTG TGTGTGTG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 2 213628318 213628325 TGTGTGTG - DEL ENSG00000221388 ENST00000408461 human ensembl 74_37 -1 novel rna NULL NULL 0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000 - - - no_errors AC093865.1 Clone_based_ensembl_gene ENSG00000221388 tier1 0 0 0.00 0 0 0.00 0 0 0.00 0 0 0.00 LOC101929847 0 genome.wustl.edu 37 15 84868716 84868729 + R DEL GGGGGGGGAGGGGT GGGGGGGGAGGGGT - TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 GGGGGGGGAGGGGT GGGGGGGGAGGGGT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 15 84868716 84868729 GGGGGGGGAGGGGT - DEL LOC101929847 ENST00000316967 human ensembl 74_37 -1 known rna NULL NULL 0.370:0.357:0.300:0.305:0.291:0.276:0.262:0.247:0.207:0.187:0.139:0.134:0.116:0.121 - - - no_errors AC103965.1 Clone_based_vega_gene ENSG00000225151 tier1 1 0 0.00 1 0 0.00 1 0 0.00 1 0 0.00 PPIAL4G 0 genome.wustl.edu 37 1 143767744 143767744 + Missense_Mutation SNP G G T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 1 143767744 143767744 G T SNP PPIAL4G ENST00000419275 human ensembl 74_37 -1 known missense c.105 p.N35K 1.000 pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom - no_errors PPIAL4G HGNC ENSG00000236334 tier1 - - 327 0 0.00 258 85 24.78 2 0 0.00 0 0 0.00 PRKACA 0 genome.wustl.edu 37 19 14202661 14202661 + R SNP G G T TCGA-FX-A76Y-01A-11D-A351-09 TCGA-FX-A76Y-10A-01D-A351-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 4b20604a-cda0-4e4e-b0fa-a37129cdef5e ba44c28e-2e23-4deb-b9d5-ea07f07e8d79 19 14202661 14202661 G T SNP PRKACA ENST00000350356 human ensembl 74_37 -1 known rna NULL NULL 0.979 - - - no_errors PRKACA HGNC ENSG00000072062 tier1 - - 73 0 0.00 48 33 40.74 4 0 0.00 4 2 33.33