Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier dbSNP GMAF n_ref_count n_alt_count normal_vaf t_ref_count t_alt_count tumor_vaf n_ref_count_val n_alt_count_val normal_vaf_val t_ref_count_val t_alt_count_val tumor_vaf_val MX1 0 genome.wustl.edu 37 21 42804053 42804053 + Missense_Mutation SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 21 42804053 42804053 C T SNP MX1 ENST00000398598 human ensembl 74_37 +1 known missense c.56 p.P19L 0.000 NULL pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF - no_errors MX1 HGNC ENSG00000157601 tier1 - - 41 0 0.00 64 28 30.43 86 0 0.00 41 13 24.07 SH2D5 0 genome.wustl.edu 37 1 21053559 21053559 + Nonsense_Mutation SNP G G A TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 1 21053559 21053559 G A SNP SH2D5 ENST00000444387 human ensembl 74_37 -1 known nonsense c.178 p.R60* 0.990 smart_PTB/PI_dom,pfscan_PTB/PI_dom pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH2 - no_errors SH2D5 HGNC ENSG00000189410 tier1 - - 60 0 0.00 57 44 43.56 87 0 0.00 21 18 46.15 TMX2 0 genome.wustl.edu 37 11 57505881 57505881 + Nonsense_Mutation SNP C C G TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 11 57505881 57505881 C G SNP TMX2 ENST00000278422 human ensembl 74_37 +1 known nonsense c.420 p.Y140* 1.000 pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold - no_errors TMX2 HGNC ENSG00000213593 tier1 - - 66 0 0.00 49 31 38.75 81 0 0.00 20 25 55.56 PLEKHB2 0 genome.wustl.edu 37 2 131890578 131890578 + Missense_Mutation SNP T T C TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 2 131890578 131890578 T C SNP PLEKHB2 ENST00000409158 human ensembl 74_37 +1 novel missense c.437 p.L146P 0.000 NULL pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors PLEKHB2 HGNC ENSG00000115762 tier1 - - 31 0 0.00 18 14 43.75 146 0 0.00 32 22 40.74 C12orf55 0 genome.wustl.edu 37 12 96894645 96894645 + Silent SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 12 96894645 96894645 C T SNP C12orf55 ENST00000524981 human ensembl 74_37 +1 putative silent c.351 p.Y117 0.786 NULL superfamily_Fibronectin_type3 - no_errors C12orf55 HGNC ENSG00000188596 tier1 - - 43 0 0.00 28 31 52.54 128 0 0.00 28 26 48.15 KCNK17 0 genome.wustl.edu 37 6 39267321 39267321 + Missense_Mutation SNP G G C TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 6 39267321 39267321 G C SNP KCNK17 ENST00000373231 human ensembl 74_37 -1 known missense c.881 p.P294R 0.000 pirsf_2pore_dom_K_chnl_TASK pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK - no_errors KCNK17 HGNC ENSG00000124780 tier1 - - 68 0 0.00 31 30 49.18 138 0 0.00 37 22 37.29 ZCWPW1 0 genome.wustl.edu 37 7 100014754 100014754 + Silent SNP T T C TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 7 100014754 100014754 T C SNP ZCWPW1 ENST00000398027 human ensembl 74_37 -1 known silent c.414 p.V138 0.000 NULL pfam_Znf_CW,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW - no_errors ZCWPW1 HGNC ENSG00000078487 tier1 - - 38 0 0.00 25 14 35.90 140 0 0.00 33 23 41.07 NCKAP5 0 genome.wustl.edu 37 2 133554264 133554264 + Silent SNP A A G TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 2 133554264 133554264 A G SNP NCKAP5 ENST00000317721 human ensembl 74_37 -1 known silent c.846 p.D282 1.000 NULL NULL - no_errors NCKAP5 HGNC ENSG00000176771 tier1 - - 29 0 0.00 28 8 22.22 125 0 0.00 55 12 17.91 DMXL2 0 genome.wustl.edu 37 15 51828631 51828631 + Silent SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 15 51828631 51828631 C T SNP DMXL2 ENST00000543779 human ensembl 74_37 -1 known silent c.2046 p.Q682 0.001 NULL pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DMXL2 HGNC ENSG00000104093 tier1 rs150462519 - 29 0 0.00 27 10 27.03 168 0 0.00 52 26 33.33 TMEM132E 0 genome.wustl.edu 37 17 32955593 32955593 + Missense_Mutation SNP A A G TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 17 32955593 32955593 A G SNP TMEM132E ENST00000321639 human ensembl 74_37 +1 known missense c.740 p.K247R 1.000 NULL NULL - no_errors TMEM132E HGNC ENSG00000181291 tier1 - - 55 0 0.00 33 22 40.00 111 0 0.00 28 29 50.88 CATSPER2P1 0 genome.wustl.edu 37 15 44019275 44019275 + R SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 15 44019275 44019275 C T SNP CATSPER2P1 ENST00000446479 human ensembl 74_37 -1 putative rna NULL NULL 0.005 - - - no_errors CATSPER2P1 HGNC ENSG00000205771 tier1 - - 28 0 0.00 13 13 50.00 47 0 0.00 13 7 35.00 TBC1D9B 0 genome.wustl.edu 37 5 179290867 179290867 + Missense_Mutation SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 5 179290867 179290867 C T SNP TBC1D9B ENST00000356834 human ensembl 74_37 -1 known missense c.3334 p.G1112S 0.036 NULL pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D9B HGNC ENSG00000197226 tier1 - - 30 0 0.00 35 19 35.19 38 0 0.00 12 7 36.84 RAD54L2 0 genome.wustl.edu 37 3 51680404 51680404 + Missense_Mutation SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 3 51680404 51680404 C T SNP RAD54L2 ENST00000409535 human ensembl 74_37 +1 known missense c.2933 p.T978I 1.000 NULL pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors RAD54L2 HGNC ENSG00000164080 tier1 - - 19 0 0.00 3 8 72.73 128 0 0.00 34 21 38.18 IL5RA 0 genome.wustl.edu 37 3 3111914 3111914 + Missense_Mutation SNP A A C TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 3 3111914 3111914 A C SNP IL5RA ENST00000256452 human ensembl 74_37 -1 known missense c.1258 p.F420V 1.000 NULL pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3 - no_errors IL5RA HGNC ENSG00000091181 tier1 - - 48 0 0.00 23 7 23.33 118 0 0.00 50 8 13.79 LOC101928703 0 genome.wustl.edu 37 4 183064420 183064420 + R SNP A A G TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 4 183064420 183064420 A G SNP LOC101928703 ENST00000315302 human ensembl 74_37 -1 known rna NULL NULL 0.043 - - - no_errors AC108142.1 Clone_based_vega_gene ENSG00000177822 tier1 - - 18 0 0.00 15 8 34.78 62 0 0.00 13 15 53.57 GRID2 0 genome.wustl.edu 37 4 94006200 94006200 + Missense_Mutation SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 4 94006200 94006200 C T SNP GRID2 ENST00000282020 human ensembl 74_37 +1 known missense c.299 p.T100M 0.994 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRID2 HGNC ENSG00000152208 tier1 - - 33 0 0.00 16 15 48.39 76 0 0.00 19 11 36.67 DCHS2 0 genome.wustl.edu 37 4 155156309 155156309 + Silent SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 4 155156309 155156309 C T SNP DCHS2 ENST00000357232 human ensembl 74_37 -1 known silent c.8130 p.G2710 0.041 NULL pfam_Cadherin,pfam_HTH_CenpB_D-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors DCHS2 HGNC ENSG00000197410 tier1 - - 39 0 0.00 29 17 36.96 62 0 0.00 22 10 31.25 OR10J5 0 genome.wustl.edu 37 1 159504982 159504982 + Silent SNP A A T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 1 159504982 159504982 A T SNP OR10J5 ENST00000334857 human ensembl 74_37 -1 known silent c.816 p.V272 0.155 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10J5 HGNC ENSG00000184155 tier1 - - 57 0 0.00 48 27 35.53 128 0 0.00 27 15 35.71 ARHGAP33 0 genome.wustl.edu 37 19 36275201 36275201 + Missense_Mutation SNP G G A TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 19 36275201 36275201 G A SNP ARHGAP33 ENST00000007510 human ensembl 74_37 +1 known missense c.1549 p.A517T 1.000 NULL pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom - no_errors ARHGAP33 HGNC ENSG00000004777 tier1 - - 57 0 0.00 53 30 36.14 58 0 0.00 18 11 37.93 PLOD2 0 genome.wustl.edu 37 3 145828222 145828222 + Missense_Mutation SNP A A G TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 3 145828222 145828222 A G SNP PLOD2 ENST00000282903 human ensembl 74_37 -1 known missense c.352 p.F118L 1.000 NULL pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph - no_errors PLOD2 HGNC ENSG00000152952 tier1 - - 34 0 0.00 28 16 36.36 121 0 0.00 34 25 42.37 SHANK2 0 genome.wustl.edu 37 11 70332818 70332818 + Missense_Mutation SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 11 70332818 70332818 C T SNP SHANK2 ENST00000338508 human ensembl 74_37 -1 known missense c.3583 p.G1195S 0.002 NULL pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain - no_errors SHANK2 HGNC ENSG00000162105 tier1 - - 47 0 0.00 29 23 44.23 22 0 0.00 6 6 50.00 GABRA5 0 genome.wustl.edu 37 15 27193366 27193366 + Missense_Mutation SNP G G A TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 15 27193366 27193366 G A SNP GABRA5 ENST00000335625 human ensembl 74_37 +1 known missense c.1375 p.A459T 0.001 prints_GABBAa5_rcpt pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel - no_errors GABRA5 HGNC ENSG00000186297 tier1 - - 27 0 0.00 33 4 10.81 120 0 0.00 64 4 5.88 DOCK10 0 genome.wustl.edu 37 2 225739435 225739435 + Missense_Mutation SNP G G A TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 2 225739435 225739435 G A SNP DOCK10 ENST00000258390 human ensembl 74_37 -1 known missense c.965 p.T322M 0.843 NULL pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors DOCK10 HGNC ENSG00000135905 tier1 rs147869852 GMAF=0.0005 71 0 0.00 86 24 21.82 138 2 1.43 38 9 19.15 ECE2 0 genome.wustl.edu 37 3 184009904 184009904 + Missense_Mutation SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 3 184009904 184009904 C T SNP ECE2 ENST00000402825 human ensembl 74_37 +1 known missense c.2530 p.P844S 1.000 pfam_Peptidase_M13_C pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C - no_errors ECE2 HGNC ENSG00000145194 tier1 - - 41 0 0.00 31 20 39.22 14 0 0.00 2 0 0.00 KRTAP10-9 0 genome.wustl.edu 37 21 46048196 46048197 + R INS - - CGCTGGT TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 21 46048196 46048197 - CGCTGGT INS KRTAP10-9 ENST00000484861 human ensembl 74_37 +1 known rna NULL NULL 0.001:0.001 - - - no_errors KRTAP10-9 HGNC ENSG00000221837 tier1 6 0 0.00 0 0 0.00 6 0 0.00 0 0 0.00 SLC6A8 0 genome.wustl.edu 37 X 152960301 152960302 + In_Frame_Ins INS - - CCTCCTGGGCTGCCT TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f X 152960301 152960302 - CCTCCTGGGCTGCCT INS SLC6A8 ENST00000253122 human ensembl 74_37 +1 known in_frame_ins c.1724_1725 p.579in_frame_insCLLLG 0.372:0.372 pfam_Na/ntran_symport,pfscan_Na/ntran_symport pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_creatine - no_errors SLC6A8 HGNC ENSG00000130821 tier1 15 0 0.00 8 0 0.00 15 0 0.00 8 0 0.00 CKS1B 0 genome.wustl.edu 37 1 154951478 154951478 + R SNP G G C TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 1 154951478 154951478 G C SNP CKS1B ENST00000471245 human ensembl 74_37 +1 known rna NULL NULL 0.043 - - - no_errors CKS1B HGNC ENSG00000173207 tier1 - - 29 0 0.00 21 13 38.24 0 0 0.00 0 0 0.00 ENSG00000216020 0 genome.wustl.edu 37 3 191693810 191693812 + R DEL CCA CCA - TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 CCA CCA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 3 191693810 191693812 CCA - DEL ENSG00000216020 ENST00000401201 human ensembl 74_37 +1 novel rna NULL NULL 0.001:0.001:0.001 - - - no_errors AC026320.1 Clone_based_ensembl_gene ENSG00000216020 tier1 10 0 0.00 14 7 33.33 0 0 0.00 0 0 0.00 ENSG00000221279 0 genome.wustl.edu 37 7 110568408 110568413 + R DEL CACACA CACACA - TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 CACACA CACACA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 7 110568408 110568413 CACACA - DEL ENSG00000221279 ENST00000408352 human ensembl 74_37 +1 novel rna NULL NULL 0.000:0.003:0.009:0.052:0.060:0.063 - - - no_errors AC005161.1 Clone_based_ensembl_gene ENSG00000221279 tier1 0 0 0.00 0 0 0.00 0 0 0.00 0 0 0.00 WASH6P 0 genome.wustl.edu 37 X 155253590 155253590 + R SNP C C T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f X 155253590 155253590 C T SNP WASH6P ENST00000461007 human ensembl 74_37 +1 known rna NULL NULL 0.004 - - - no_errors WASH6P HGNC ENSG00000182484 tier1 - - 97 0 0.00 77 12 13.48 0 0 0.00 0 0 0.00 WDR18 0 genome.wustl.edu 37 19 985972 985972 + Missense_Mutation SNP G G T TCGA-MB-A5YA-01A-11D-A29N-09 TCGA-MB-A5YA-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 8fdc2ffd-b882-4425-bfc3-43670326b763 d78c8041-1687-4dfc-b60b-b976c8fb311f 19 985972 985972 G T SNP WDR18 ENST00000251289 human ensembl 74_37 +1 known missense c.318 p.W106C 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR18 HGNC ENSG00000065268 tier1 - - 30 0 0.00 38 4 9.52 95 0 0.00 67 2 2.90