Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
C21orf33	0	genome.wustl.edu	37	21	45556016	45556016	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	21	45556016	45556016	T	C	SNP	C21orf33	ENST00000291577	human	ensembl	74_37	+1	known	missense	c.269	p.I90T	1.000	pfam_ThiJ/PfpI	pfam_ThiJ/PfpI	-	no_errors	C21orf33	HGNC	ENSG00000160221	tier1	-	-	26	0	0.00	18	15	45.45	90	0	0.00	41	34	45.33
ZDHHC3	0	genome.wustl.edu	37	3	44968308	44968308	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	3	44968308	44968308	C	A	SNP	ZDHHC3	ENST00000296127	human	ensembl	74_37	-1	known	missense	c.857	p.R286I	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC3	HGNC	ENSG00000163812	tier1	-	-	32	0	0.00	12	5	29.41	124	1	0.80	81	15	15.62
PTPRR	0	genome.wustl.edu	37	12	71095059	71095059	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	12	71095059	71095059	C	A	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	missense	c.1052	p.G351V	1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233	tier1	-	-	63	0	0.00	54	15	21.74	185	0	0.00	106	32	23.19
GABRA1	0	genome.wustl.edu	37	5	161309577	161309577	+	Silent	SNP	A	A	G			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	5	161309577	161309577	A	G	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	silent	c.573	p.R191	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355	tier1	-	-	51	0	0.00	23	33	58.93	175	0	0.00	42	76	64.41
EXD2	0	genome.wustl.edu	37	14	69697224	69697224	+	Missense_Mutation	SNP	C	C	G			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	14	69697224	69697224	C	G	SNP	EXD2	ENST00000312994	human	ensembl	74_37	+1	known	missense	c.626	p.S209C	1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD2	HGNC	ENSG00000081177	tier1	-	-	45	0	0.00	17	19	52.78	117	0	0.00	27	39	58.21
STRA6	0	genome.wustl.edu	37	15	74490172	74490172	+	R	SNP	T	T	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	15	74490172	74490172	T	A	SNP	STRA6	ENST00000573456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STRA6	HGNC	ENSG00000137868	tier1	-	-	37	0	0.00	28	18	39.13	78	0	0.00	37	26	40.62
HCLS1	0	genome.wustl.edu	37	3	121350968	121350968	+	Missense_Mutation	SNP	G	G	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	3	121350968	121350968	G	T	SNP	HCLS1	ENST00000314583	human	ensembl	74_37	-1	known	missense	c.1304	p.A435D	0.989	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353	tier1	-	-	12	0	0.00	6	6	50.00	57	0	0.00	33	8	19.51
GK2	0	genome.wustl.edu	37	4	80328302	80328302	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	4	80328302	80328302	T	A	SNP	GK2	ENST00000358842	human	ensembl	74_37	-1	known	missense	c.1053	p.E351D	0.743	pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	tier1	-	-	57	0	0.00	35	27	43.55	123	0	0.00	48	60	55.56
SPTBN2	0	genome.wustl.edu	37	11	66482782	66482782	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	11	66482782	66482782	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.394	p.H132Y	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898	tier1	-	-	85	0	0.00	59	20	25.32	145	0	0.00	51	12	19.05
TEP1	0	genome.wustl.edu	37	14	20876097	20876097	+	Missense_Mutation	SNP	G	G	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	14	20876097	20876097	G	C	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.502	p.L168V	0.000	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_CHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	tier1	-	-	59	0	0.00	35	14	28.57	159	0	0.00	81	22	21.36
SORCS1	0	genome.wustl.edu	37	10	108434899	108434899	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	10	108434899	108434899	T	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1848	p.E616D	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	tier1	-	-	30	0	0.00	14	9	39.13	122	0	0.00	35	17	32.69
PTPRM	0	genome.wustl.edu	37	18	7955245	7955245	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	18	7955245	7955245	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.965	p.T322M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	tier1	-	-	16	0	0.00	5	11	68.75	92	1	1.08	11	44	80.00
TRPC3	0	genome.wustl.edu	37	4	122853578	122853578	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	4	122853578	122853578	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	missense	c.835	p.D279N	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741	tier1	-	-	25	0	0.00	23	14	37.84	70	0	0.00	27	28	50.91
FCHO1	0	genome.wustl.edu	37	19	17886885	17886885	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	19	17886885	17886885	C	A	SNP	FCHO1	ENST00000252771	human	ensembl	74_37	+1	known	missense	c.1097	p.A366D	0.821	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,superfamily_Clathrin_mu_C,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO1	HGNC	ENSG00000130475	tier1	-	-	43	0	0.00	26	20	43.48	53	0	0.00	15	23	60.53
DQX1	0	genome.wustl.edu	37	2	74751281	74751281	+	Silent	SNP	C	C	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	2	74751281	74751281	C	A	SNP	DQX1	ENST00000393951	human	ensembl	74_37	-1	known	silent	c.585	p.P195	0.843	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	tier1	-	-	49	0	0.00	49	20	28.99	153	0	0.00	95	31	24.60
WDR96	0	genome.wustl.edu	37	10	105903296	105903296	+	Missense_Mutation	SNP	A	A	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	10	105903296	105903296	A	T	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	missense	c.4046	p.M1349K	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748	tier1	-	-	50	0	0.00	20	23	53.49	156	0	0.00	39	14	25.93
PTPN13	0	genome.wustl.edu	37	4	87685826	87685826	+	Silent	SNP	C	C	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	4	87685826	87685826	C	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.4098	p.I1366	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	tier1	-	-	34	0	0.00	34	12	26.09	151	0	0.00	142	18	11.25
FABP7	0	genome.wustl.edu	37	6	123100972	123100972	+	Silent	SNP	G	G	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	6	123100972	123100972	G	C	SNP	FABP7	ENST00000356535	human	ensembl	74_37	+1	known	silent	c.33	p.L11	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP7	HGNC	ENSG00000164434	tier1	-	-	30	0	0.00	20	6	23.08	93	0	0.00	55	16	22.54
XRCC1	0	genome.wustl.edu	37	19	44057586	44057586	+	Missense_Mutation	SNP	G	G	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	19	44057586	44057586	G	C	SNP	XRCC1	ENST00000262887	human	ensembl	74_37	-1	known	missense	c.568	p.L190V	1.000	NULL	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050	tier1	-	-	37	0	0.00	18	35	66.04	80	0	0.00	19	25	56.82
PTPRJ	0	genome.wustl.edu	37	11	48152268	48152268	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	11	48152268	48152268	G	A	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.1615	p.V539I	1.000	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	tier1	-	-	27	0	0.00	16	11	40.74	173	0	0.00	67	19	22.09
ZFR	0	genome.wustl.edu	37	5	32390512	32390512	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	5	32390512	32390512	T	C	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.2011	p.M671V	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	tier1	-	-	22	0	0.00	13	8	38.10	130	0	0.00	53	15	22.06
CHR4	0	genome.wustl.edu	37	20	61981730	61981730	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	20	61981730	61981730	G	A	SNP	CHR4	ENST00000370263	human	ensembl	74_37	-1	known	missense	c.1033	p.R345C	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHR4	HGNC	ENSG00000101204	tier1	rs142260793	-	31	0	0.00	37	23	38.33	33	0	0.00	18	10	35.71
PDXDC2P	0	genome.wustl.edu	37	16	70057280	70057280	+	Splice_Site	DEL	A	A	-			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	16	70057280	70057280	A	-	DEL	PDXDC2P	ENST00000325845	human	ensembl	74_37	-1	known	splice_site_del	c.NULL	NULL	1.000	-	-	-	no_errors	PDXDC2P	HGNC	ENSG00000196696	tier1			19	0	0.00	5	9	64.29	48	0	0.00	11	7	38.89
RN7SL809P	0	genome.wustl.edu	37	12	57064237	57064237	+	R	DEL	G	G	-			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	12	57064237	57064237	G	-	DEL	RN7SL809P	ENST00000482040	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RN7SL809P	HGNC	ENSG00000241217	tier1			9	0	0.00	10	5	33.33	48	0	0.00	31	18	36.73
KSR2	0	genome.wustl.edu	37	12	118199050	118199050	+	Missense_Mutation	SNP	G	G	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	12	118199050	118199050	G	A	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.752	p.S251L	0.999	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	tier1	-	-	23	0	0.00	10	15	60.00	31	0	0.00	7	7	50.00
LINC00957	0	genome.wustl.edu	37	7	44079576	44079576	+	R	SNP	G	G	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	7	44079576	44079576	G	T	SNP	LINC00957	ENST00000416824	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	LINC00957	HGNC	ENSG00000235314	tier1	-	-	11	0	0.00	9	7	43.75	35	0	0.00	9	7	43.75
MDGA1	0	genome.wustl.edu	37	6	37612423	37612423	+	Missense_Mutation	SNP	T	T	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	6	37612423	37612423	T	C	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.2263	p.N755D	1.000	superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139	tier1	-	-	47	0	0.00	5	21	80.77	94	0	0.00	7	33	82.50
OR1D2	0	genome.wustl.edu	37	17	2995908	2995908	+	Missense_Mutation	SNP	C	C	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	17	2995908	2995908	C	A	SNP	OR1D2	ENST00000331459	human	ensembl	74_37	-1	known	missense	c.383	p.C128F	0.865	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1D2	HGNC	ENSG00000184166	tier1	-	-	84	0	0.00	14	40	74.07	62	0	0.00	8	17	68.00
OTOP1	0	genome.wustl.edu	37	4	4199618	4199618	+	Missense_Mutation	SNP	C	C	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	4	4199618	4199618	C	T	SNP	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	missense	c.943	p.A315T	0.965	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982	tier1	-	-	61	0	0.00	38	28	42.42	20	0	0.00	5	12	70.59
TNXB	0	genome.wustl.edu	37	6	32041701	32041701	+	Silent	SNP	G	G	T			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	6	32041701	32041701	G	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.4404	p.A1468	0.286	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	tier1	-	-	27	0	0.00	1	10	90.91	52	0	0.00	6	13	68.42
GOLGA8O	0	genome.wustl.edu	37	15	32738673	32738673	+	Splice_Site	SNP	A	A	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	15	32738673	32738673	A	C	SNP	GOLGA8O	ENST00000509311	human	ensembl	74_37	-1	novel	splice_site	c.1368+2	e15+2	1.000	-	-	-	no_errors	GOLGA8O	HGNC	ENSG00000206127	tier1	-	-	293	1	0.34	313	66	17.41	11	0	0.00	6	0	0.00
LINC00969	0	genome.wustl.edu	37	3	195390553	195390553	+	R	SNP	A	A	G			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	3	195390553	195390553	A	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086	tier1	rs201494538	-	30	0	0.00	7	2	22.22	16	0	0.00	5	0	0.00
PRKAA2	0	genome.wustl.edu	37	1	57111096	57111096	+	Missense_Mutation	SNP	G	G	C			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	1	57111096	57111096	G	C	SNP	PRKAA2	ENST00000371244	human	ensembl	74_37	+1	known	missense	c.36	p.K12N	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409	tier1	-	-	33	0	0.00	25	6	19.35	28	0	0.00	4	1	20.00
MUC4	0	genome.wustl.edu	37	3	195507032	195507032	+	Missense_Mutation	SNP	T	T	A			TCGA-PC-A5DL-01A-11D-A26G-09	TCGA-PC-A5DL-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	59863adf-efee-4f78-884f-9947c95acec7	ff5644a0-f09f-46ba-b790-9054b5d61ca3	3	195507032	195507032	T	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.11419	p.T3807S	0.318	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	143	0	0.00	81	9	10.00	2	0	0.00	3	0	0.00