Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
PCDHA1	0	genome.wustl.edu	37	5	140167900	140167900	+	Silent	SNP	G	G	A			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	5	140167900	140167900	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.2025	p.A675	0.004	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	tier1	rs143057294	-	61	0	0.00	23	18	43.90	12	0	0.00	8	0	0.00
RCBTB1	0	genome.wustl.edu	37	13	50123666	50123666	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	13	50123666	50123666	G	T	SNP	RCBTB1	ENST00000258646	human	ensembl	74_37	-1	known	missense	c.973	p.H325N	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144	tier1	-	-	68	0	0.00	23	4	14.81	9	0	0.00	7	0	0.00
UBE2V1	0	genome.wustl.edu	37	20	48698944	48698944	+	R	SNP	G	G	T			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	20	48698944	48698944	G	T	SNP	UBE2V1	ENST00000396059	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBE2V1	HGNC	ENSG00000244687	tier1	-	-	50	0	0.00	40	4	9.09	9	0	0.00	6	0	0.00
ENSG00000234978	0	genome.wustl.edu	37	1	142803333	142803333	+	R	SNP	G	G	A			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	1	142803333	142803333	G	A	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978	tier1	rs79184194	-	50	0	0.00	79	12	13.19	0	0	0.00	0	0	0.00
FAM159A	0	genome.wustl.edu	37	1	53099179	53099179	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	1	53099179	53099179	G	C	SNP	FAM159A	ENST00000517870	human	ensembl	74_37	+1	known	missense	c.14	p.C5S	1.000	NULL	NULL	-	no_errors	FAM159A	HGNC	ENSG00000182183	tier1	-	-	13	0	0.00	3	7	70.00	0	0	0.00	0	0	0.00
HMGN2P46	0	genome.wustl.edu	37	15	45848230	45848231	+	R	INS	-	-	T			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	15	45848230	45848231	-	T	INS	HMGN2P46	ENST00000313559	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.997	-	-	-	no_errors	HMGN2P46	HGNC	ENSG00000179362	tier1			22	0	0.00	35	6	14.63	4	0	0.00	5	0	0.00
LOR	0	genome.wustl.edu	37	1	153234265	153234265	+	Silent	SNP	C	C	T			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	1	153234265	153234265	C	T	SNP	LOR	ENST00000368742	human	ensembl	74_37	+1	known	silent	c.840	p.G280	0.088	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782	tier1	-	-	25	0	0.00	16	14	45.16	2	0	0.00	8	0	0.00
PCDHB4	0	genome.wustl.edu	37	5	140503450	140503450	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	5	140503450	140503450	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.1870	p.R624C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	tier1	-	-	64	0	0.00	44	4	8.33	0	0	0.00	2	0	0.00
SPRED3	0	genome.wustl.edu	37	19	38886200	38886200	+	Silent	SNP	C	C	A			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	19	38886200	38886200	C	A	SNP	SPRED3	ENST00000338502	human	ensembl	74_37	+1	known	silent	c.648	p.G216	0.992	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED3	HGNC	ENSG00000188766	tier1	-	-	29	0	0.00	5	7	58.33	4	0	0.00	4	0	0.00
CDCP1	0	genome.wustl.edu	37	3	45127316	45127316	+	Silent	SNP	G	G	T			TCGA-SI-A71O-01A-12D-A33E-09	TCGA-SI-A71O-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	33159557-eb32-44de-aaa2-80a9752b3a96	7054e42b-ba0b-4d61-86b0-970d4d7dd6bc	3	45127316	45127316	G	T	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	silent	c.2325	p.S775	0.996	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814	tier1	-	-	35	0	0.00	25	4	13.79	60	0	0.00	32	2	5.88