Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
DGKG	0	genome.wustl.edu	37	3	186015929	186015929	+	Silent	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	3	186015929	186015929	G	T	SNP	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	silent	c.234	p.A78	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	tier1	-	-	90	0	0.00	54	7	11.48	75	0	0.00	45	6	11.76
HS6ST3	0	genome.wustl.edu	37	13	97485014	97485014	+	Silent	SNP	T	T	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	13	97485014	97485014	T	A	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	silent	c.978	p.T326	0.934	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352	tier1	-	-	64	0	0.00	38	5	11.63	96	0	0.00	43	6	12.24
FRMPD2	0	genome.wustl.edu	37	10	49414887	49414887	+	Silent	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	49414887	49414887	G	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	silent	c.1701	p.I567	0.998	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	tier1	-	-	106	0	0.00	33	10	23.26	83	1	1.19	35	9	20.45
PASD1	0	genome.wustl.edu	37	X	150789982	150789982	+	Silent	SNP	A	A	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	X	150789982	150789982	A	G	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	silent	c.336	p.L112	0.001	superfamily_PAS	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	tier1	-	-	133	0	0.00	51	32	38.55	90	0	0.00	56	35	38.46
PKHD1L1	0	genome.wustl.edu	37	8	110457290	110457290	+	Missense_Mutation	SNP	T	T	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	110457290	110457290	T	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.5192	p.V1731E	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	66	0	0.00	49	5	9.26	87	0	0.00	114	14	10.94
IZUMO3	0	genome.wustl.edu	37	9	24543733	24543733	+	Silent	SNP	A	A	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	9	24543733	24543733	A	T	SNP	IZUMO3	ENST00000543880	human	ensembl	74_37	-1	novel	silent	c.510	p.A170	0.882	NULL	NULL	-	no_errors	IZUMO3	HGNC	ENSG00000205442	tier1	-	-	68	0	0.00	23	17	42.50	112	0	0.00	43	36	45.57
RABGAP1L	0	genome.wustl.edu	37	1	174652688	174652688	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	174652688	174652688	G	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.1853	p.G618A	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061	tier1	-	-	145	0	0.00	80	7	8.05	120	0	0.00	67	10	12.99
GCNT6	0	genome.wustl.edu	37	6	10634149	10634149	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	10634149	10634149	G	A	SNP	GCNT6	ENST00000417671	human	ensembl	74_37	+1	known	missense	c.157	p.A53T	0.000	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT6	HGNC	ENSG00000205318	tier1	-	-	59	0	0.00	25	16	39.02	138	0	0.00	56	47	45.19
KHDRBS2	0	genome.wustl.edu	37	6	62757794	62757794	+	Missense_Mutation	SNP	C	C	G			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	62757794	62757794	C	G	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.325	p.D109H	1.000	smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232	tier1	-	-	99	0	0.00	32	13	28.89	92	0	0.00	58	55	48.67
PAXIP1	0	genome.wustl.edu	37	7	154752762	154752762	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	7	154752762	154752762	C	T	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.2275	p.A759T	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	tier1	-	-	111	0	0.00	43	19	30.65	103	0	0.00	33	22	40.00
USP46	0	genome.wustl.edu	37	4	53492298	53492298	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	4	53492298	53492298	T	C	SNP	USP46	ENST00000441222	human	ensembl	74_37	-1	known	missense	c.448	p.K150E	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP46	HGNC	ENSG00000109189	tier1	-	-	209	0	0.00	79	56	41.48	100	0	0.00	59	35	37.23
SUZ12	0	genome.wustl.edu	37	17	30322708	30322732	+	Frame_Shift_Del	DEL	TCCGTCCACAAGAAATGGAAGTAGA	TCCGTCCACAAGAAATGGAAGTAGA	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	TCCGTCCACAAGAAATGGAAGTAGA	TCCGTCCACAAGAAATGGAAGTAGA	TCCGTCCACAAGAAATGGAAGTAGA	-	TCCGTCCACAAGAAATGGAAGTAGA	TCCGTCCACAAGAAATGGAAGTAGA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	17	30322708	30322732	TCCGTCCACAAGAAATGGAAGTAGA	-	DEL	SUZ12	ENST00000322652	human	ensembl	74_37	+1	known	frame_shift_del	c.1721_1745	p.R575fs	1.000:0.999:1.000:1.000:0.967:1.000:1.000:0.973:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Polycomb_protein_VEFS-Box	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	tier1			105	0	0.00	15	7	31.82	105	0	0.00	15	7	31.82
MYC	0	genome.wustl.edu	37	8	128750604	128750605	+	In_Frame_Ins	INS	-	-	CAG			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-	-	CAG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	128750604	128750605	-	CAG	INS	MYC	ENST00000377970	human	ensembl	74_37	+1	known	in_frame_ins	c.141_142	p.51in_frame_insQ	1.000:1.000	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997	tier1			102	0	0.00	60	15	20.00	66	0	0.00	24	11	31.43
CPNE9	0	genome.wustl.edu	37	3	9771323	9771323	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	3	9771323	9771323	C	T	SNP	CPNE9	ENST00000383832	human	ensembl	74_37	+1	known	missense	c.1609	p.R537W	0.998	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE9	HGNC	ENSG00000144550	tier1	-	-	89	0	0.00	33	37	52.86	25	0	0.00	9	10	52.63
DLGAP2	0	genome.wustl.edu	37	8	1497797	1497797	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	8	1497797	1497797	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.938	p.P313L	0.999	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	tier1	-	-	73	0	0.00	54	7	11.48	10	0	0.00	7	5	41.67
KAZN	0	genome.wustl.edu	37	1	15430617	15430617	+	Silent	SNP	C	C	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	1	15430617	15430617	C	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	silent	c.1980	p.I660	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337	tier1	-	-	60	0	0.00	4	14	77.78	17	0	0.00	5	9	64.29
EVL	0	genome.wustl.edu	37	14	100595978	100595978	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	14	100595978	100595978	G	A	SNP	EVL	ENST00000392920	human	ensembl	74_37	+1	known	missense	c.796	p.G266R	0.985	pirsf_Vasodilator_phosphoprotein	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	-	no_errors	EVL	HGNC	ENSG00000196405	tier1	-	-	52	0	0.00	40	10	20.00	78	0	0.00	59	5	7.69
TBC1D20	0	genome.wustl.edu	37	20	422183	422183	+	R	SNP	G	G	T			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	20	422183	422183	G	T	SNP	TBC1D20	ENST00000461188	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D20	HGNC	ENSG00000125875	tier1	-	-	48	0	0.00	51	7	12.07	98	0	0.00	143	10	6.54
COL11A2	0	genome.wustl.edu	37	6	33147260	33147260	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	6	33147260	33147260	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.1451	p.A484V	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	rs143965711	-	77	0	0.00	36	4	10.00	7	0	0.00	8	0	0.00
CDH23	0	genome.wustl.edu	37	10	73157033	73157034	+	Frame_Shift_Ins	INS	-	-	CGAGG			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	10	73157033	73157034	-	CGAGG	INS	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	frame_shift_ins	c.88_89	p.G34fs	0.008:0.011	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
FOXA1	0	genome.wustl.edu	37	14	38064348	38064350	+	R	DEL	GCG	GCG	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	14	38064348	38064350	GCG	-	DEL	FOXA1	ENST00000557418	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998:0.994:0.997	-	-	-	no_errors	FOXA1	HGNC	ENSG00000129514	tier1			8	0	0.00	6	4	40.00	0	0	0.00	0	0	0.00
KRTAP10-9	0	genome.wustl.edu	37	21	46048196	46048197	+	R	INS	-	-	CGCTGGT			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	21	46048196	46048197	-	CGCTGGT	INS	KRTAP10-9	ENST00000484861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
MN1	0	genome.wustl.edu	37	22	28194881	28194883	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	22	28194881	28194883	GCT	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	in_frame_del	c.1651_1649	p.Q550in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	tier1			43	0	0.00	11	2	15.38	3	0	0.00	2	0	0.00
MN1	0	genome.wustl.edu	37	22	28195625	28195627	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	22	28195625	28195627	GCT	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	in_frame_del	c.907_905	p.Q302in_frame_del	0.962:0.987:0.994	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	tier1			35	0	0.00	12	3	20.00	2	0	0.00	1	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	2978	2978	+	R	SNP	T	T	C			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	MT	2978	2978	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	40	0	0.00	29	4	12.12	1	0	0.00	0	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	2814	2814	+	R	SNP	G	G	A			TCGA-SI-AA8C-01A-11D-A387-09	TCGA-SI-AA8C-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b939bdb6-694c-4411-b89b-ee9ac7dc62a9	7a75c68f-e44f-4634-92eb-e759d0c9075c	MT	2814	2814	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	344	1	0.29	32	210	86.42	3	0	0.00	0	3	100.00