writing sdrf to SKCM.merger.sdrf.txt ------------------------------------------------------------------ 2016-02-12 18:15:40.884138 . ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/SKCM/22232040/infile1.input.tsv'] Make a softlink...... Flag: False. Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/SKCM/22232040/infile1.input.tsv Make a softlink is done.