Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
MTHFR	0	genome.wustl.edu	37	1	11861224	11861224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	1	11861224	11861224	G	A	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	missense	c.592	p.R198W	0.998	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				203	0	0	134	12	8.21918
FLG	0	genome.wustl.edu	37	1	152283625	152283625	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	1	152283625	152283625	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.3737	p.S1246I	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				507	0	0	431	42	8.87949
MUC1	0	genome.wustl.edu	37	1	155160774	155160774	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	1	155160774	155160774	G	T	SNP	MUC1	ENST00000368395	human	ensembl	74_37	-1	known	missense	c.753	p.S251R	0.005	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC1	HGNC	ENSG00000185499				66	0	0	77	7	8.33333
LHX8	0	genome.wustl.edu	37	1	75602794	75602794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	1	75602794	75602794	G	A	SNP	LHX8	ENST00000294638	human	ensembl	74_37	+1	known	missense	c.115	p.E39K	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX8	HGNC	ENSG00000162624				58	0	0	59	9	13.2353
MRGPRX2	0	genome.wustl.edu	37	11	19077900	19077900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	11	19077900	19077900	C	T	SNP	MRGPRX2	ENST00000329773	human	ensembl	74_37	-1	known	missense	c.50	p.G17E	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695				405	0	0	319	40	11.1421
PDHX	0	genome.wustl.edu	37	11	35006231	35006231	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	11	35006231	35006231	G	C	SNP	PDHX	ENST00000227868	human	ensembl	74_37	+1	known	missense	c.1138	p.D380H	1.000	pfam_2-oxoacid_DH_actylTfrase	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435				132	0	0	109	10	8.40336
BRMS1	0	genome.wustl.edu	37	11	66105194	66105194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	11	66105194	66105194	G	A	SNP	BRMS1	ENST00000425825	human	ensembl	74_37	-1	known	missense	c.818	p.A273V	0.000	NULL	pfam_Sds3	-	no_errors	BRMS1	HGNC	ENSG00000174744				10	0	0	16	14	46.6667
PDE2A	0	genome.wustl.edu	37	11	72288493	72288493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	11	72288493	72288493	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	missense	c.2761	p.E921K	0.998	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				72	0	0	86	7	7.52688
ZCCHC8	0	genome.wustl.edu	37	12	122967235	122967235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	12	122967235	122967235	G	A	SNP	ZCCHC8	ENST00000336229	human	ensembl	74_37	-1	known	missense	c.679	p.P227S	0.999	superfamily_Znf_CCHC	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030				46	0	0	26	6	18.75
SLC38A4	0	genome.wustl.edu	37	12	47172329	47172329	+	Silent	SNP	A	A	G			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	12	47172329	47172329	A	G	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	silent	c.948	p.H316	0.029	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				60	0	0	69	7	9.21053
NECAP1	0	genome.wustl.edu	37	12	8242546	8242546	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	12	8242546	8242546	A	T	SNP	NECAP1	ENST00000339754	human	ensembl	74_37	+1	known	missense	c.110	p.K37I	1.000	pfam_NECAP-1	pfam_NECAP-1	-	no_errors	NECAP1	HGNC	ENSG00000089818				189	0	0	149	15	9.14634
REC8	0	genome.wustl.edu	37	14	24646938	24646938	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	14	24646938	24646938	C	A	SNP	REC8	ENST00000311457	human	ensembl	74_37	+1	known	missense	c.835	p.R279S	0.854	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918				47	0	0	48	3	5.88235
ZNF75A	0	genome.wustl.edu	37	16	3367328	3367328	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	16	3367328	3367328	T	G	SNP	ZNF75A	ENST00000574298	human	ensembl	74_37	+1	known	missense	c.350	p.F117C	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086				71	0	0	57	10	14.9254
PAPD5	0	genome.wustl.edu	37	16	50258847	50258847	+	Silent	SNP	T	T	C			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	16	50258847	50258847	T	C	SNP	PAPD5	ENST00000436909	human	ensembl	74_37	+1	known	silent	c.1509	p.Y503	0.123	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD5	HGNC	ENSG00000121274				210	0	0	141	21	12.963
PDP2	0	genome.wustl.edu	37	16	66918510	66918510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	16	66918510	66918510	G	A	SNP	PDP2	ENST00000311765	human	ensembl	74_37	+1	known	missense	c.323	p.R108Q	0.833	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP2	HGNC	ENSG00000172840				93	0	0	65	4	5.7971
HYDIN	0	genome.wustl.edu	37	16	71054178	71054178	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	16	71054178	71054178	T	C	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.3085	p.I1029V	0.589	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				41	0	0	44	3	6.38298
FAM83G	0	genome.wustl.edu	37	17	18874692	18874692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	17	18874692	18874692	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	missense	c.2452	p.R818W	0.001	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522				127	0	0	113	16	12.4031
CPAMD8	0	genome.wustl.edu	37	19	17104353	17104353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	19	17104353	17104353	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1280	p.T427M	0.800	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				69	0	0	63	7	10
TMEM143	0	genome.wustl.edu	37	19	48836573	48836573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	19	48836573	48836573	A	G	SNP	TMEM143	ENST00000293261	human	ensembl	74_37	-1	known	missense	c.1283	p.M428T	0.000	NULL	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558				132	0	0	91	23	20.1754
ZNRF4	0	genome.wustl.edu	37	19	5456633	5456633	+	Silent	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	19	5456633	5456633	G	A	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	silent	c.1131	p.P377	0.142	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				83	0	0	80	11	12.0879
KHSRP	0	genome.wustl.edu	37	19	6417055	6417055	+	Silent	SNP	G	G	C			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	19	6417055	6417055	G	C	SNP	KHSRP	ENST00000398148	human	ensembl	74_37	-1	known	silent	c.1125	p.P375	0.999	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHSRP	HGNC	ENSG00000088247				123	0	0	97	11	10.1852
RGPD3	0	genome.wustl.edu	37	2	107049684	107049684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	2	107049684	107049684	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.2263	p.E755K	0.953	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165				561	0	0	508	28	5.22388
FRG1B	0	genome.wustl.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	20	29625941	29625941	A	T	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.185	p.D62V	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531				112	1	0.884956	111	6	5.12821
SLC17A9	0	genome.wustl.edu	37	20	61598542	61598542	+	RNA	SNP	C	C	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	20	61598542	61598542	C	A	SNP	SLC17A9	ENST00000488738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC17A9	HGNC	ENSG00000101194				29	0	0	18	7	28
ARMC8	0	genome.wustl.edu	37	3	137983022	137983022	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	3	137983022	137983022	C	T	SNP	ARMC8	ENST00000469044	human	ensembl	74_37	+1	known	nonsense	c.1267	p.Q423*	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098				113	0	0	71	12	14.4578
MUC4	0	genome.wustl.edu	37	3	195512212	195512212	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	3	195512212	195512212	G	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.6239	p.P2080H	0.337	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				10	0	0	7	4	36.3636
BRD8	0	genome.wustl.edu	37	5	137485477	137485477	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	5	137485477	137485477	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	nonsense	c.3130	p.Q1044*	0.336	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				105	0	0	84	8	8.69565
SDHA	0	genome.wustl.edu	37	5	256624	256624	+	RNA	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	5	256624	256624	G	A	SNP	SDHA	ENST00000507522	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDHA	HGNC	ENSG00000073578				26	0	0	20	4	16.6667
MIER3	0	genome.wustl.edu	37	5	56234714	56234714	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	5	56234714	56234714	T	A	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	missense	c.311	p.D104V	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545				123	0	0	96	12	11.1111
SPDEF	0	genome.wustl.edu	37	6	34508912	34508912	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	6	34508912	34508912	C	T	SNP	SPDEF	ENST00000374037	human	ensembl	74_37	-1	known	nonsense	c.483	p.W161*	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPDEF	HGNC	ENSG00000124664				20	0	0	15	6	28.5714
TSNARE1	0	genome.wustl.edu	37	8	143425714	143425714	+	Silent	SNP	G	G	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	8	143425714	143425714	G	T	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	silent	c.358	p.R120	0.247	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				22	0	0	23	2	8
SLC25A53	0	genome.wustl.edu	37	X	103349655	103349655	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	103349655	103349655	A	T	SNP	SLC25A53	ENST00000357421	human	ensembl	74_37	-1	known	missense	c.286	p.F96I	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A53	HGNC	ENSG00000176274				130	0	0	108	15	12.1951
AMOT	0	genome.wustl.edu	37	X	112035177	112035177	+	Silent	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	112035177	112035177	C	T	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	silent	c.1809	p.V603	1.000	pfam_Angiomotin_C,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				136	0	0	129	10	7.19424
DOCK11	0	genome.wustl.edu	37	X	117810670	117810670	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	117810670	117810670	G	T	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.5430	p.E1810D	0.722	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				81	0	0	63	6	8.69565
OFD1	0	genome.wustl.edu	37	X	13753462	13753462	+	Silent	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	13753462	13753462	C	T	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	silent	c.108	p.L36	0.998	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				65	0	0	64	6	8.57143
ZFX	0	genome.wustl.edu	37	X	24228401	24228401	+	Silent	SNP	G	G	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	24228401	24228401	G	A	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	silent	c.1443	p.R481	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889				169	0	0	128	19	12.9252
SLC35A2	0	genome.wustl.edu	37	X	48761971	48761971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	48761971	48761971	C	A	SNP	SLC35A2	ENST00000445167	human	ensembl	74_37	-1	known	missense	c.625	p.G209W	0.606	NULL	pfam_Nuc_sug_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100				44	0	0	28	5	15.1515
MED12	0	genome.wustl.edu	37	X	70357076	70357076	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	70357076	70357076	C	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.5591	p.P1864Q	0.990	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				82	0	0	70	10	12.5
ZCCHC13	0	genome.wustl.edu	37	X	73524180	73524180	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	X	73524180	73524180	C	T	SNP	ZCCHC13	ENST00000339534	human	ensembl	74_37	+1	known	nonsense	c.79	p.R27*	0.000	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC13	HGNC	ENSG00000187969				44	0	0	41	4	8.88889
HOXB5	0	genome.wustl.edu	37	17	46669686	46669687	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	17	46669686	46669687	-	A	INS	HOXB5	ENST00000239151	human	ensembl	74_37	-1	known	frame_shift_ins	c.695_694	p.C232fs	1.000:1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075				302	0	0	243	21	7.95455
SMAD4	0	genome.wustl.edu	37	18	48591918	48591929	+	In_Frame_Del	DEL	CGCTTTTGTTTG	CGCTTTTGTTTG	-			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	CGCTTTTGTTTG	CGCTTTTGTTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	18	48591918	48591929	CGCTTTTGTTTG	-	DEL	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	in_frame_del	c.1081_1092	p.RFCL361in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				111	0	0	79	8	9.1954
SLC9A4	0	genome.wustl.edu	37	2	103130667	103130668	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	2	103130667	103130668	-	A	INS	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	frame_shift_ins	c.1678_1679	p.T561fs	0.998:1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				138	0	0	139	19	12.0253
NBEAL1	0	genome.wustl.edu	37	2	204045127	204045127	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	2	204045127	204045127	T	-	DEL	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	frame_shift_del	c.6400	p.F2134fs	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				189	0	0	133	16	10.7383
FOXP1	0	genome.wustl.edu	37	3	71008435	71008436	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6564-01A-12D-1882-08	TCGA-BR-6564-10A-01D-1882-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2e66eb75-097c-4ad8-b2b3-9f5849dfd02f	32051bbc-4e2d-46f1-8495-b126556ab3bd	3	71008435	71008436	TC	-	DEL	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	frame_shift_del	c.1997_1996	p.D666fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				254	0	0	167	14	7.73481