Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF HIAT1 0 genome.wustl.edu 37 1 100534100 100534100 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 100534100 100534100 G A SNP HIAT1 ENST00000370152 human ensembl 74_37 +1 known silent c.777 p.P259 0.025 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG - no_errors HIAT1 HGNC ENSG00000156875 156 0 0 71 31 30.3922 SLC30A7 0 genome.wustl.edu 37 1 101440402 101440402 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 101440402 101440402 G A SNP SLC30A7 ENST00000357650 human ensembl 74_37 +1 novel missense c.1120 p.A374T 1.000 pfam_Cation_efflux pfam_Cation_efflux,tigrfam_Cation_efflux - no_errors SLC30A7 HGNC ENSG00000162695 56 0 0 17 12 41.3793 COL11A1 0 genome.wustl.edu 37 1 103453196 103453196 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 103453196 103453196 C T SNP COL11A1 ENST00000358392 human ensembl 74_37 -1 known missense c.2531 p.G844E 1.000 pfam_Collagen pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL11A1 HGNC ENSG00000060718 67 0 0 29 7 19.4444 NTNG1 0 genome.wustl.edu 37 1 107867369 107867369 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 107867369 107867369 C T SNP NTNG1 ENST00000370068 human ensembl 74_37 +1 known missense c.712 p.R238C 1.000 pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N - no_errors NTNG1 HGNC ENSG00000162631 59 0 0 27 10 27.027 FAM102B 0 genome.wustl.edu 37 1 109143275 109143275 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 109143275 109143275 A G SNP FAM102B ENST00000370035 human ensembl 74_37 +1 known silent c.225 p.L75 0.818 pfam_NT-C2 pfam_NT-C2 - no_errors FAM102B HGNC ENSG00000162636 58 0 0 32 15 31.9149 HENMT1 0 genome.wustl.edu 37 1 109192991 109192991 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 109192991 109192991 G A SNP HENMT1 ENST00000370031 human ensembl 74_37 -1 known missense c.598 p.R200C 0.000 NULL NULL - no_errors HENMT1 HGNC ENSG00000162639 55 0 0 34 9 20.9302 PRPF38B 0 genome.wustl.edu 37 1 109235364 109235364 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 109235364 109235364 G T SNP PRPF38B ENST00000370025 human ensembl 74_37 +1 known missense c.151 p.G51C 1.000 pfam_PRP38 pfam_PRP38 - no_errors PRPF38B HGNC ENSG00000134186 75 0 0 28 17 37.7778 KCNC4 0 genome.wustl.edu 37 1 110754617 110754617 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 110754617 110754617 G A SNP KCNC4 ENST00000369787 human ensembl 74_37 +1 known missense c.496 p.G166R 0.955 NULL pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9 - no_errors KCNC4 HGNC ENSG00000116396 11 0 0 5 5 50 KCNA3 0 genome.wustl.edu 37 1 111216961 111216961 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 111216961 111216961 G A SNP KCNA3 ENST00000369769 human ensembl 74_37 -1 known silent c.471 p.D157 1.000 pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1 pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv - no_errors KCNA3 HGNC ENSG00000177272 171 0 0 91 24 20.8696 DDX20 0 genome.wustl.edu 37 1 112302123 112302123 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 112302123 112302123 T C SNP DDX20 ENST00000369702 human ensembl 74_37 +1 known silent c.498 p.I166 1.000 pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX20 HGNC ENSG00000064703 109 0 0 58 26 30.9524 B3GALT6 0 genome.wustl.edu 37 1 1168142 1168142 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 1168142 1168142 C T SNP B3GALT6 ENST00000379198 human ensembl 74_37 +1 known missense c.484 p.R162W 1.000 pfam_Glyco_trans_31 pfam_Glyco_trans_31 - no_errors B3GALT6 HGNC ENSG00000176022 43 0 0 27 10 27.027 TTF2 0 genome.wustl.edu 37 1 117629087 117629087 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 117629087 117629087 G T SNP TTF2 ENST00000369466 human ensembl 74_37 +1 known missense c.2103 p.K701N 1.000 pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors TTF2 HGNC ENSG00000116830 45 0 0 29 13 30.9524 WDR3 0 genome.wustl.edu 37 1 118492448 118492448 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 118492448 118492448 T A SNP WDR3 ENST00000349139 human ensembl 74_37 +1 known missense c.1599 p.S533R 0.730 pfscan_WD40_repeat_dom pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR3 HGNC ENSG00000065183 34 0 0 19 5 20.8333 NOTCH2 0 genome.wustl.edu 37 1 120497755 120497755 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 120497755 120497755 G A SNP NOTCH2 ENST00000256646 human ensembl 74_37 -1 known silent c.2127 p.P709 0.011 pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom - no_errors NOTCH2 HGNC ENSG00000134250 87 0 0 50 22 30.5556 PRAMEF4 0 genome.wustl.edu 37 1 12943196 12943196 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 12943196 12943196 G A SNP PRAMEF4 ENST00000235349 human ensembl 74_37 -1 known missense c.20 p.T7I 0.000 NULL NULL - no_errors PRAMEF4 HGNC ENSG00000243073 123 0 0 85 6 6.59341 PEX11B 0 genome.wustl.edu 37 1 145518235 145518235 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 145518235 145518235 C T SNP PEX11B ENST00000369306 human ensembl 74_37 +1 known missense c.337 p.R113C 0.455 pfam_PEX11 pfam_PEX11 - no_errors PEX11B HGNC ENSG00000131779 197 0 0 109 32 22.695 SV2A 0 genome.wustl.edu 37 1 149881071 149881071 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 149881071 149881071 G A SNP SV2A ENST00000369146 human ensembl 74_37 -1 known missense c.1232 p.S411L 0.997 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2 - no_errors SV2A HGNC ENSG00000159164 87 0 0 41 12 22.6415 PRPF3 0 genome.wustl.edu 37 1 150305577 150305577 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 150305577 150305577 G A SNP PRPF3 ENST00000324862 human ensembl 74_37 +1 known missense c.635 p.R212Q 1.000 NULL pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom - no_errors PRPF3 HGNC ENSG00000117360 60 0 0 38 12 24 ECM1 0 genome.wustl.edu 37 1 150485747 150485747 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 150485747 150485747 G A SNP ECM1 ENST00000369049 human ensembl 74_37 +1 known missense c.1508 p.R503Q 0.806 pfam_ECM1 pfam_ECM1,superfamily_Serum_albumin-like - no_errors ECM1 HGNC ENSG00000143369 123 1 0.806452 80 28 25.9259 PI4KB 0 genome.wustl.edu 37 1 151280270 151280270 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 151280270 151280270 C T SNP PI4KB ENST00000271657 human ensembl 74_37 -1 known missense c.998 p.R333Q 1.000 NULL pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PI4KB HGNC ENSG00000143393 63 0 0 37 15 28.8462 CGN 0 genome.wustl.edu 37 1 151491113 151491113 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 151491113 151491113 C T SNP CGN ENST00000271636 human ensembl 74_37 +1 known nonsense c.118 p.R40* 0.869 NULL pfam_Myosin_tail - no_errors CGN HGNC ENSG00000143375 133 0 0 62 26 29.5455 TCHH 0 genome.wustl.edu 37 1 152080843 152080843 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 152080843 152080843 C T SNP TCHH ENST00000368804 human ensembl 74_37 -1 known missense c.4850 p.R1617H 0.018 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors TCHH HGNC ENSG00000159450 108 0 0 49 24 32.8767 TCHH 0 genome.wustl.edu 37 1 152082357 152082357 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 152082357 152082357 C A SNP TCHH ENST00000368804 human ensembl 74_37 -1 known missense c.3336 p.E1112D 0.132 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors TCHH HGNC ENSG00000159450 143 0 0 79 21 21 S100A4 0 genome.wustl.edu 37 1 153516206 153516206 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 153516206 153516206 C T SNP S100A4 ENST00000468373 human ensembl 74_37 -1 known rna NULL NULL 0.002 - - - no_errors S100A4 HGNC ENSG00000196154 150 0 0 77 35 31.25 INTS3 0 genome.wustl.edu 37 1 153730118 153730118 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 153730118 153730118 A G SNP INTS3 ENST00000318967 human ensembl 74_37 +1 known missense c.1028 p.Q343R 1.000 pfam_Int_cplx_su3 pfam_Int_cplx_su3 - no_errors INTS3 HGNC ENSG00000143624 104 0 0 62 21 25.3012 DENND4B 0 genome.wustl.edu 37 1 153904887 153904887 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 153904887 153904887 T C SNP DENND4B ENST00000361217 human ensembl 74_37 -1 known silent c.3789 p.A1263 0.823 NULL pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom - no_errors DENND4B HGNC ENSG00000198837 18 0 0 7 8 53.3333 ZBTB7B 0 genome.wustl.edu 37 1 154987334 154987334 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 154987334 154987334 C T SNP ZBTB7B ENST00000417934 human ensembl 74_37 +1 known silent c.300 p.G100 0.194 pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB7B HGNC ENSG00000160685 105 1 0.943396 47 14 22.9508 TRIM46 0 genome.wustl.edu 37 1 155154492 155154492 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 155154492 155154492 G A SNP TRIM46 ENST00000334634 human ensembl 74_37 +1 known missense c.1753 p.V585M 1.000 superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box - no_errors TRIM46 HGNC ENSG00000163462 27 0 0 5 4 44.4444 HCN3 0 genome.wustl.edu 37 1 155254532 155254532 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 155254532 155254532 G A SNP HCN3 ENST00000368358 human ensembl 74_37 +1 known missense c.1073 p.R358H 1.000 superfamily_cNMP-bd-like pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG - no_errors HCN3 HGNC ENSG00000143630 46 0 0 29 7 19.4444 PKLR 0 genome.wustl.edu 37 1 155265010 155265010 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 155265010 155265010 C T SNP PKLR ENST00000342741 human ensembl 74_37 -1 known silent c.591 p.A197 0.130 pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase - no_errors PKLR HGNC ENSG00000143627 151 0 0 90 29 24.3697 PMF1-BGLAP 0 genome.wustl.edu 37 1 156206195 156206195 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 156206195 156206195 T G SNP PMF1-BGLAP ENST00000368276 human ensembl 74_37 +1 known missense c.424 p.W142G 0.998 NULL pfam_Nnf1 - no_errors PMF1-BGLAP HGNC ENSG00000260238 55 0 0 21 10 32.2581 PAQR6 0 genome.wustl.edu 37 1 156214974 156214974 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 156214974 156214974 C T SNP PAQR6 ENST00000335852 human ensembl 74_37 -1 known missense c.250 p.A84T 1.000 pfam_HlyIII-related pfam_HlyIII-related - no_errors PAQR6 HGNC ENSG00000160781 102 0 0 52 11 17.4603 SMG5 0 genome.wustl.edu 37 1 156237904 156237904 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 156237904 156237904 A G SNP SMG5 ENST00000361813 human ensembl 74_37 -1 known splice_site c.908+2 e9+2 1.000 - - - no_errors SMG5 HGNC ENSG00000198952 94 0 0 47 19 28.7879 RHBG 0 genome.wustl.edu 37 1 156339144 156339144 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 156339144 156339144 G A SNP RHBG ENST00000368246 human ensembl 74_37 +1 known missense c.104 p.R35H 1.000 pfam_NH4_transpt_AmtB-like_dom pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD - no_errors RHBG HGNC ENSG00000132677 43 0 0 16 5 23.8095 PRCC 0 genome.wustl.edu 37 1 156756757 156756757 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 156756757 156756757 C A SNP PRCC ENST00000271526 human ensembl 74_37 +1 known missense c.874 p.P292T 1.000 NULL pfam_PRCC - no_errors PRCC HGNC ENSG00000143294 74 0 0 43 5 10.4167 FCRL3 0 genome.wustl.edu 37 1 157666085 157666085 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 157666085 157666085 G A SNP FCRL3 ENST00000492769 human ensembl 74_37 -1 known missense c.877 p.R293W 0.550 pfscan_Ig-like_dom pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors FCRL3 HGNC ENSG00000160856 124 0 0 61 22 26.506 CD1D 0 genome.wustl.edu 37 1 158151490 158151490 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 158151490 158151490 G A SNP CD1D ENST00000368171 human ensembl 74_37 +1 known missense c.307 p.A103T 0.000 superfamily_MHC_I/II-like_Ag-recog pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom - no_errors CD1D HGNC ENSG00000158473 59 0 0 46 7 13.2075 ATP1A4 0 genome.wustl.edu 37 1 160136351 160136351 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 160136351 160136351 C T SNP ATP1A4 ENST00000368081 human ensembl 74_37 +1 known missense c.1081 p.R361W 0.019 pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP1A4 HGNC ENSG00000132681 90 0 0 50 24 32.4324 DCAF8 0 genome.wustl.edu 37 1 160188206 160188206 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 160188206 160188206 G A SNP DCAF8 ENST00000608310 human ensembl 74_37 -1 known missense c.2047 p.R683W 1.000 NULL pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DCAF8 HGNC ENSG00000132716 110 0 0 66 29 30.5263 CLCNKB 0 genome.wustl.edu 37 1 16375037 16375037 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 16375037 16375037 G A SNP CLCNKB ENST00000375679 human ensembl 74_37 +1 known silent c.615 p.A205 0.015 pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K - no_errors CLCNKB HGNC ENSG00000184908 58 0 0 21 9 30 ALDH9A1 0 genome.wustl.edu 37 1 165632255 165632255 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 165632255 165632255 G A SNP ALDH9A1 ENST00000463610 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors ALDH9A1 HGNC ENSG00000143149 69 0 0 28 15 34.8837 POGK 0 genome.wustl.edu 37 1 166819124 166819124 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 166819124 166819124 C T SNP POGK ENST00000367875 human ensembl 74_37 +1 known silent c.1308 p.H436 0.606 pfam_DDE_SF_endonuclease_CENPB-like pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel - no_errors POGK HGNC ENSG00000143157 63 0 0 40 12 23.0769 ILDR2 0 genome.wustl.edu 37 1 166944501 166944501 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 166944501 166944501 T C SNP ILDR2 ENST00000271417 human ensembl 74_37 -1 known missense c.5 p.D2G 0.217 NULL pfam_LISCH7,smart_Ig_sub - no_errors ILDR2 HGNC ENSG00000143195 102 0 0 47 16 25.3968 RCSD1 0 genome.wustl.edu 37 1 167653175 167653175 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 167653175 167653175 G A SNP RCSD1 ENST00000367854 human ensembl 74_37 +1 known silent c.45 p.S15 0.004 NULL pfam_RCSD - no_errors RCSD1 HGNC ENSG00000198771 281 0 0 158 68 30.0885 NADK 0 genome.wustl.edu 37 1 1686048 1686048 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 1686048 1686048 C T SNP NADK ENST00000344463 human ensembl 74_37 -1 known missense c.1213 p.G405S 0.000 pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ - no_errors NADK HGNC ENSG00000008130 144 0 0 55 14 20.2899 SELL 0 genome.wustl.edu 37 1 169672458 169672458 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 169672458 169672458 C A SNP SELL ENST00000236147 human ensembl 74_37 -1 known missense c.929 p.G310V 0.840 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_Sushi_SCR_CCP pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily - no_errors SELL HGNC ENSG00000188404 24 0 0 18 4 18.1818 SELE 0 genome.wustl.edu 37 1 169696562 169696562 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 169696562 169696562 T C SNP SELE ENST00000333360 human ensembl 74_37 -1 known missense c.1573 p.T525A 0.707 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily - no_errors SELE HGNC ENSG00000007908 87 0 0 40 16 28.5714 SCYL3 0 genome.wustl.edu 37 1 169823861 169823861 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 169823861 169823861 G A SNP SCYL3 ENST00000367770 human ensembl 74_37 -1 known silent c.1719 p.C573 0.760 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom - no_errors SCYL3 HGNC ENSG00000000457 131 0 0 63 29 31.5217 CROCC 0 genome.wustl.edu 37 1 17297237 17297237 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 17297237 17297237 C T SNP CROCC ENST00000375541 human ensembl 74_37 +1 known missense c.5759 p.A1920V 1.000 NULL superfamily_Prefoldin,superfamily_t-SNARE - no_errors CROCC HGNC ENSG00000058453 34 0 0 15 7 31.8182 SLC9C2 0 genome.wustl.edu 37 1 173494047 173494047 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 173494047 173494047 A G SNP SLC9C2 ENST00000367714 human ensembl 74_37 -1 known silent c.2385 p.G795 0.018 NULL pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom - no_errors SLC9C2 HGNC ENSG00000162753 92 0 0 60 15 20 GPR52 0 genome.wustl.edu 37 1 174418193 174418193 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 174418193 174418193 T C SNP GPR52 ENST00000367685 human ensembl 74_37 +1 known missense c.944 p.V315A 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors GPR52 HGNC ENSG00000203737 105 0 0 79 22 21.7822 TNN 0 genome.wustl.edu 37 1 175066629 175066629 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 175066629 175066629 G T SNP TNN ENST00000239462 human ensembl 74_37 +1 known missense c.1665 p.Q555H 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3 - no_errors TNN HGNC ENSG00000120332 59 0 0 26 8 23.5294 PADI4 0 genome.wustl.edu 37 1 17634769 17634769 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 17634769 17634769 G A SNP PADI4 ENST00000375448 human ensembl 74_37 +1 known missense c.52 p.V18M 1.000 pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub - no_errors PADI4 HGNC ENSG00000159339 77 0 0 40 20 33.3333 RASAL2 0 genome.wustl.edu 37 1 178414799 178414799 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 178414799 178414799 T C SNP RASAL2 ENST00000367649 human ensembl 74_37 +1 known splice_site c.1627+2 e9+2 1.000 - - - no_errors RASAL2 HGNC ENSG00000075391 33 0 0 19 3 13.6364 CACNA1E 0 genome.wustl.edu 37 1 181453006 181453006 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 181453006 181453006 G A SNP CACNA1E ENST00000367573 human ensembl 74_37 +1 known silent c.126 p.T42 1.000 NULL pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su - no_errors CACNA1E HGNC ENSG00000198216 117 0 0 75 24 24.2424 CDC73 0 genome.wustl.edu 37 1 193099372 193099372 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 193099372 193099372 G A SNP CDC73 ENST00000367435 human ensembl 74_37 +1 known silent c.306 p.A102 0.951 NULL pfam_RNA_pol_access_fac_Cdc73 - no_errors CDC73 HGNC ENSG00000134371 60 0 0 30 13 30.2326 CFHR5 0 genome.wustl.edu 37 1 196977710 196977710 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 196977710 196977710 C T SNP CFHR5 ENST00000367414 human ensembl 74_37 +1 known missense c.1679 p.A560V 0.000 superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CFHR5 HGNC ENSG00000134389 57 0 0 26 18 40.9091 CRB1 0 genome.wustl.edu 37 1 197411413 197411413 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 197411413 197411413 C T SNP CRB1 ENST00000367400 human ensembl 74_37 +1 known silent c.3996 p.C1332 0.980 smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors CRB1 HGNC ENSG00000134376 207 1 0.480769 161 37 18.6869 DENND1B 0 genome.wustl.edu 37 1 197621403 197621403 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 197621403 197621403 G T SNP DENND1B ENST00000367396 human ensembl 74_37 -1 known missense c.409 p.P137T 1.000 pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom - no_errors DENND1B HGNC ENSG00000213047 59 0 0 45 6 11.7647 ZNF281 0 genome.wustl.edu 37 1 200376244 200376244 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 200376244 200376244 A G SNP ZNF281 ENST00000294740 human ensembl 74_37 -1 known missense c.2590 p.S864P 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF281 HGNC ENSG00000162702 98 0 0 41 26 38.806 PKP1 0 genome.wustl.edu 37 1 201292264 201292264 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 201292264 201292264 A G SNP PKP1 ENST00000263946 human ensembl 74_37 +1 known missense c.1690 p.T564A 1.000 superfamily_ARM-type_fold,smart_Armadillo pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo - no_errors PKP1 HGNC ENSG00000081277 138 0 0 97 20 17.094 LMOD1 0 genome.wustl.edu 37 1 201868874 201868874 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 201868874 201868874 G T SNP LMOD1 ENST00000367288 human ensembl 74_37 -1 known missense c.1267 p.H423N 1.000 NULL pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom - no_errors LMOD1 HGNC ENSG00000163431 56 0 0 35 13 27.0833 PLA2G2A 0 genome.wustl.edu 37 1 20304962 20304962 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 20304962 20304962 C T SNP PLA2G2A ENST00000375111 human ensembl 74_37 -1 known silent c.96 p.T32 0.001 pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2 pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2 - no_errors PLA2G2A HGNC ENSG00000188257 44 0 0 28 7 20 ATP2B4 0 genome.wustl.edu 37 1 203672793 203672793 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 203672793 203672793 C T SNP ATP2B4 ENST00000357681 human ensembl 74_37 +1 known silent c.951 p.D317 0.997 pfam_ATPase_P-typ_transduc_dom_A pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP2B4 HGNC ENSG00000058668 198 0 0 114 31 21.3793 PIK3C2B 0 genome.wustl.edu 37 1 204438765 204438765 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 204438765 204438765 A G SNP PIK3C2B ENST00000367187 human ensembl 74_37 -1 known missense c.166 p.S56P 0.427 NULL pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3C2B HGNC ENSG00000133056 68 0 0 33 14 29.7872 LRRN2 0 genome.wustl.edu 37 1 204588874 204588874 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 204588874 204588874 G A SNP LRRN2 ENST00000367175 human ensembl 74_37 -1 known missense c.247 p.R83C 0.010 NULL pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors LRRN2 HGNC ENSG00000170382 94 0 0 47 20 29.8507 NFASC 0 genome.wustl.edu 37 1 204951139 204951139 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 204951139 204951139 G A SNP NFASC ENST00000367172 human ensembl 74_37 +1 known missense c.2461 p.G821R 0.999 superfamily_Fibronectin_type3 pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors NFASC HGNC ENSG00000163531 22 0 0 12 8 40 TMCC2 0 genome.wustl.edu 37 1 205210873 205210873 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 205210873 205210873 C T SNP TMCC2 ENST00000358024 human ensembl 74_37 +1 known missense c.448 p.R150C 1.000 NULL pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE - no_errors TMCC2 HGNC ENSG00000133069 63 0 0 24 12 33.3333 TMCC2 0 genome.wustl.edu 37 1 205211130 205211130 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 205211130 205211130 C T SNP TMCC2 ENST00000358024 human ensembl 74_37 +1 known silent c.705 p.N235 0.017 NULL pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE - no_errors TMCC2 HGNC ENSG00000133069 50 0 0 35 6 14.6341 IL10 0 genome.wustl.edu 37 1 206943240 206943240 + Splice_Site SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 206943240 206943240 C T SNP IL10 ENST00000423557 human ensembl 74_37 -1 known splice_site c.379-1 e4-1 1.000 - - - no_errors IL10 HGNC ENSG00000136634 43 0 0 32 3 8.57143 CR1 0 genome.wustl.edu 37 1 207739262 207739262 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 207739262 207739262 T C SNP CR1 ENST00000367049 human ensembl 74_37 +1 known missense c.3946 p.C1316R 0.873 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CR1 HGNC ENSG00000203710 101 0 0 58 24 29.2683 MUL1 0 genome.wustl.edu 37 1 20827268 20827268 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 20827268 20827268 T C SNP MUL1 ENST00000264198 human ensembl 74_37 -1 known missense c.974 p.E325G 0.991 pfscan_Znf_RING pfam_MULAN,pfscan_Znf_RING - no_errors MUL1 HGNC ENSG00000090432 82 0 0 42 16 27.5862 ECE1 0 genome.wustl.edu 37 1 21605716 21605716 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 21605716 21605716 C T SNP ECE1 ENST00000374893 human ensembl 74_37 -1 known missense c.248 p.C83Y 0.926 NULL pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C - no_errors ECE1 HGNC ENSG00000117298 108 0 0 80 5 5.88235 USH2A 0 genome.wustl.edu 37 1 216073455 216073455 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 216073455 216073455 G A SNP USH2A ENST00000366943 human ensembl 74_37 -1 known missense c.7556 p.A2519V 0.010 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N - no_errors USH2A HGNC ENSG00000042781 89 0 0 56 18 24.3243 USH2A 0 genome.wustl.edu 37 1 216258044 216258044 + Silent SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 216258044 216258044 T G SNP USH2A ENST00000366943 human ensembl 74_37 -1 known silent c.5163 p.G1721 0.676 superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,pfscan_Laminin_G pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N - no_errors USH2A HGNC ENSG00000042781 82 0 0 41 15 26.7857 USP48 0 genome.wustl.edu 37 1 22048163 22048163 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 22048163 22048163 C T SNP USP48 ENST00000308271 human ensembl 74_37 -1 known silent c.1743 p.L581 1.000 NULL pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup - no_errors USP48 HGNC ENSG00000090686 30 0 0 11 5 31.25 HSPG2 0 genome.wustl.edu 37 1 22157779 22157779 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 22157779 22157779 C T SNP HSPG2 ENST00000374695 human ensembl 74_37 -1 known missense c.11491 p.V3831I 0.006 superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt - no_errors HSPG2 HGNC ENSG00000142798 143 0 0 83 37 30.8333 TP53BP2 0 genome.wustl.edu 37 1 223976852 223976852 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 223976852 223976852 T C SNP TP53BP2 ENST00000343537 human ensembl 74_37 -1 known silent c.3021 p.S1007 0.045 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3 - no_errors TP53BP2 HGNC ENSG00000143514 69 0 0 50 24 32.4324 TMEM63A 0 genome.wustl.edu 37 1 226053631 226053631 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 226053631 226053631 C A SNP TMEM63A ENST00000366835 human ensembl 74_37 -1 known missense c.712 p.D238Y 0.008 NULL pfam_DUF221 - no_errors TMEM63A HGNC ENSG00000196187 47 0 0 24 13 35.1351 JMJD4 0 genome.wustl.edu 37 1 227923089 227923089 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 227923089 227923089 C A SNP JMJD4 ENST00000366758 human ensembl 74_37 -1 known missense c.24 p.Q8H 0.002 NULL pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom - no_errors JMJD4 HGNC ENSG00000081692 17 0 0 14 3 17.6471 OBSCN 0 genome.wustl.edu 37 1 228494839 228494839 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 228494839 228494839 C T SNP OBSCN ENST00000422127 human ensembl 74_37 +1 known missense c.12164 p.T4055M 0.020 smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors OBSCN HGNC ENSG00000154358 94 0 0 54 19 26.0274 GALNT2 0 genome.wustl.edu 37 1 230391063 230391063 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 230391063 230391063 C T SNP GALNT2 ENST00000366672 human ensembl 74_37 +1 known missense c.1109 p.P370L 1.000 NULL pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNT2 HGNC ENSG00000143641 115 0 0 65 24 26.9663 PGBD5 0 genome.wustl.edu 37 1 230492718 230492718 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 230492718 230492718 G A SNP PGBD5 ENST00000321327 human ensembl 74_37 -1 known silent c.771 p.H257 0.361 NULL NULL - no_errors PGBD5 HGNC ENSG00000177614 80 0 0 37 11 22.9167 TRIM67 0 genome.wustl.edu 37 1 231337127 231337127 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 231337127 231337127 C T SNP TRIM67 ENST00000366652 human ensembl 74_37 +1 known silent c.1398 p.R466 0.693 smart_Bbox_C pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box - no_errors TRIM67 HGNC ENSG00000119283 24 0 0 6 3 33.3333 MAP10 0 genome.wustl.edu 37 1 232942219 232942219 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 232942219 232942219 C T SNP MAP10 ENST00000418460 human ensembl 74_37 +1 known missense c.1450 p.R484C 0.000 NULL NULL - no_errors MAP10 HGNC ENSG00000212916 48 0 0 17 10 37.037 NTPCR 0 genome.wustl.edu 37 1 233091397 233091397 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 233091397 233091397 G A SNP NTPCR ENST00000366628 human ensembl 74_37 +1 known silent c.129 p.Q43 0.999 pfam_Nuc-triphosphatase_THEP1,superfamily_P-loop_NTPase,smart_AAA+_ATPase pfam_Nuc-triphosphatase_THEP1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors NTPCR HGNC ENSG00000135778 73 0 0 39 10 20.4082 KIAA1804 0 genome.wustl.edu 37 1 233518334 233518334 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 233518334 233518334 G T SNP KIAA1804 ENST00000366624 human ensembl 74_37 +1 known silent c.2988 p.V996 0.071 pirsf_MAPKKK9/10/11 pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom - no_errors MLK4 Uniprot_gn ENSG00000143674 117 0 0 43 28 39.4366 LYST 0 genome.wustl.edu 37 1 235973208 235973208 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 235973208 235973208 C T SNP LYST ENST00000389793 human ensembl 74_37 -1 known missense c.910 p.D304N 0.403 NULL pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors LYST HGNC ENSG00000143669 27 0 0 16 7 30.4348 HEATR1 0 genome.wustl.edu 37 1 236740202 236740202 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 236740202 236740202 G A SNP HEATR1 ENST00000366582 human ensembl 74_37 -1 known missense c.2803 p.R935C 0.992 superfamily_ARM-type_fold pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold - no_errors HEATR1 HGNC ENSG00000119285 88 0 0 50 11 18.0328 ACTN2 0 genome.wustl.edu 37 1 236899013 236899013 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 236899013 236899013 C T SNP ACTN2 ENST00000366578 human ensembl 74_37 +1 known missense c.776 p.A259V 1.000 superfamily_CH-domain pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom - no_errors ACTN2 HGNC ENSG00000077522 43 0 0 30 7 18.9189 OPN3 0 genome.wustl.edu 37 1 241803320 241803320 + Silent SNP G G C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 241803320 241803320 G C SNP OPN3 ENST00000366554 human ensembl 74_37 -1 known silent c.237 p.L79 0.998 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors OPN3 HGNC ENSG00000054277 39 0 0 19 10 34.4828 MYOM3 0 genome.wustl.edu 37 1 24383880 24383880 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 24383880 24383880 C T SNP MYOM3 ENST00000330966 human ensembl 74_37 -1 known missense c.4297 p.E1433K 0.897 NULL pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors MYOM3 HGNC ENSG00000142661 59 0 0 30 15 33.3333 OR14K1 0 genome.wustl.edu 37 1 247902023 247902023 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 247902023 247902023 C T SNP OR14K1 ENST00000283225 human ensembl 74_37 +1 known missense c.107 p.A36V 0.011 prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR14K1 HGNC ENSG00000153230 69 0 0 37 19 33.9286 OR2M5 0 genome.wustl.edu 37 1 248309326 248309326 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 248309326 248309326 C T SNP OR2M5 ENST00000366476 human ensembl 74_37 +1 known missense c.877 p.R293C 0.180 prints_Olfact_rcpt,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2M5 HGNC ENSG00000162727 102 0 0 55 24 30.3797 OR2T33 0 genome.wustl.edu 37 1 248436402 248436402 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 248436402 248436402 A T SNP OR2T33 ENST00000318021 human ensembl 74_37 -1 known missense c.715 p.C239S 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2T33 HGNC ENSG00000177212 39 0 0 22 6 21.4286 SH3BP5L 0 genome.wustl.edu 37 1 249106454 249106454 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 249106454 249106454 C T SNP SH3BP5L ENST00000366472 human ensembl 74_37 -1 known missense c.827 p.R276H 1.000 pfam_SH3-bd_5 pfam_SH3-bd_5 - no_errors SH3BP5L HGNC ENSG00000175137 44 0 0 34 8 19.0476 TNFRSF14 0 genome.wustl.edu 37 1 2493160 2493160 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 2493160 2493160 C T SNP TNFRSF14 ENST00000355716 human ensembl 74_37 +1 known silent c.600 p.H200 0.000 NULL pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_14,prints_Fas_rcpt - no_errors TNFRSF14 HGNC ENSG00000157873 87 0 0 53 13 19.697 SEPN1 0 genome.wustl.edu 37 1 26131655 26131655 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 26131655 26131655 C T SNP SEPN1 ENST00000354177 human ensembl 74_37 +1 known silent c.324 p.C108 0.000 NULL pfscan_EF_hand_dom - no_errors SEPN1 HGNC ENSG00000162430 113 0 0 58 24 29.2683 UBXN11 0 genome.wustl.edu 37 1 26609150 26609150 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 26609150 26609150 C T SNP UBXN11 ENST00000374221 human ensembl 74_37 -1 known missense c.1282 p.A428T 0.176 pfscan_UBX pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX - no_errors UBXN11 HGNC ENSG00000158062 65 0 0 25 15 37.5 ARID1A 0 genome.wustl.edu 37 1 27101099 27101099 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 27101099 27101099 C T SNP ARID1A ENST00000324856 human ensembl 74_37 +1 known nonsense c.4381 p.R1461* 1.000 NULL pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID1A HGNC ENSG00000117713 126 0 0 53 30 36.1446 NR0B2 0 genome.wustl.edu 37 1 27238427 27238427 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 27238427 27238427 G A SNP NR0B2 ENST00000254227 human ensembl 74_37 -1 known missense c.683 p.P228L 0.991 pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt - no_errors NR0B2 HGNC ENSG00000131910 190 0 0 95 41 30.1471 ACTRT2 0 genome.wustl.edu 37 1 2939331 2939331 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 2939331 2939331 G A SNP ACTRT2 ENST00000378404 human ensembl 74_37 +1 known missense c.1081 p.A361T 0.001 pfam_Actin-related,smart_Actin-related pfam_Actin-related,smart_Actin-related,prints_Actin-related - no_errors ACTRT2 HGNC ENSG00000169717 216 0 0 128 43 25.1462 PTPRU 0 genome.wustl.edu 37 1 29650164 29650164 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 29650164 29650164 G A SNP PTPRU ENST00000345512 human ensembl 74_37 +1 known missense c.4006 p.V1336M 1.000 pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom - no_errors PTPRU HGNC ENSG00000060656 38 0 0 38 3 7.31707 COL16A1 0 genome.wustl.edu 37 1 32163529 32163529 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 32163529 32163529 G A SNP COL16A1 ENST00000271069 human ensembl 74_37 -1 known missense c.635 p.A212V 1.000 superfamily_ConA-like_lec_gl_sf,smart_Laminin_G pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G - no_errors COL16A1 HGNC ENSG00000084636 91 0 0 52 20 27.7778 PRDM16 0 genome.wustl.edu 37 1 3319366 3319366 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 3319366 3319366 T C SNP PRDM16 ENST00000270722 human ensembl 74_37 +1 known missense c.688 p.F230L 0.998 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors PRDM16 HGNC ENSG00000142611 59 0 0 44 3 6.38298 KIAA1522 0 genome.wustl.edu 37 1 33235543 33235543 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 33235543 33235543 C T SNP KIAA1522 ENST00000401073 human ensembl 74_37 +1 known missense c.763 p.R255C 0.492 NULL NULL - no_errors KIAA1522 HGNC ENSG00000162522 22 0 0 11 3 21.4286 S100PBP 0 genome.wustl.edu 37 1 33291708 33291708 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 33291708 33291708 G A SNP S100PBP ENST00000373475 human ensembl 74_37 +1 known missense c.8 p.C3Y 1.000 NULL NULL - no_errors S100PBP HGNC ENSG00000116497 84 0 0 53 22 29.3333 TMEM54 0 genome.wustl.edu 37 1 33360288 33360288 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 33360288 33360288 G A SNP TMEM54 ENST00000482771 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors TMEM54 HGNC ENSG00000121900 15 0 0 7 3 30 RNF19B 0 genome.wustl.edu 37 1 33402698 33402698 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 33402698 33402698 G T SNP RNF19B ENST00000373456 human ensembl 74_37 -1 known silent c.1908 p.P636 0.984 NULL pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING - no_errors RNF19B HGNC ENSG00000116514 196 0 0 105 45 30 RNF19B 0 genome.wustl.edu 37 1 33407887 33407887 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 33407887 33407887 C T SNP RNF19B ENST00000373456 human ensembl 74_37 -1 known missense c.1579 p.G527S 1.000 NULL pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING - no_errors RNF19B HGNC ENSG00000116514 144 0 0 74 23 23.7113 MEGF6 0 genome.wustl.edu 37 1 3425195 3425195 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 3425195 3425195 G A SNP MEGF6 ENST00000356575 human ensembl 74_37 -1 known silent c.1587 p.N529 0.975 smart_EG-like_dom,pfscan_EG-like_dom pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain - no_errors MEGF6 HGNC ENSG00000162591 66 0 0 34 13 27.6596 MEGF6 0 genome.wustl.edu 37 1 3425664 3425664 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 3425664 3425664 G A SNP MEGF6 ENST00000356575 human ensembl 74_37 -1 known silent c.1503 p.G501 0.981 NULL pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain - no_errors MEGF6 HGNC ENSG00000162591 17 0 0 2 3 60 GJB3 0 genome.wustl.edu 37 1 35250436 35250436 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 35250436 35250436 C T SNP GJB3 ENST00000373362 human ensembl 74_37 +1 known silent c.73 p.L25 1.000 pfam_Connexin_N,prints_Connexin pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31 - no_errors GJB3 HGNC ENSG00000188910 65 0 0 41 11 21.1538 SFPQ 0 genome.wustl.edu 37 1 35650166 35650166 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 35650166 35650166 G A SNP SFPQ ENST00000357214 human ensembl 74_37 -1 known missense c.2015 p.A672V 1.000 NULL pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom - no_errors SFPQ HGNC ENSG00000116560 69 0 0 56 23 29.1139 NCDN 0 genome.wustl.edu 37 1 36026428 36026428 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 36026428 36026428 A G SNP NCDN ENST00000356090 human ensembl 74_37 +1 known missense c.676 p.S226G 1.000 NULL NULL - no_errors NCDN HGNC ENSG00000020129 77 0 0 33 20 37.7358 ZC3H12A 0 genome.wustl.edu 37 1 37948942 37948942 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 37948942 37948942 A G SNP ZC3H12A ENST00000373087 human ensembl 74_37 +1 known silent c.1530 p.P510 0.000 NULL pfam_RNase_Zc3h12 - no_errors ZC3H12A HGNC ENSG00000163874 298 0 0 241 14 5.4902 C1orf109 0 genome.wustl.edu 37 1 38155444 38155444 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 38155444 38155444 G A SNP C1orf109 ENST00000358011 human ensembl 74_37 -1 known missense c.109 p.P37S 0.996 NULL NULL - no_errors C1orf109 HGNC ENSG00000116922 47 0 0 27 13 32.5 GJA9 0 genome.wustl.edu 37 1 39341336 39341336 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 39341336 39341336 A G SNP GJA9 ENST00000357771 human ensembl 74_37 -1 known silent c.435 p.N145 0.937 NULL pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin - no_errors GJA9 HGNC ENSG00000131233 113 0 0 67 8 10.6667 MACF1 0 genome.wustl.edu 37 1 39888401 39888401 + Splice_Site SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 39888401 39888401 G T SNP MACF1 ENST00000317713 human ensembl 74_37 +1 known splice_site c.9793-1 e54-1 1.000 - - - no_errors MACF1 HGNC ENSG00000127603 101 0 0 84 5 5.61798 HIVEP3 0 genome.wustl.edu 37 1 42048952 42048952 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 42048952 42048952 C T SNP HIVEP3 ENST00000247584 human ensembl 74_37 -1 known missense c.1517 p.R506Q 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors HIVEP3 HGNC ENSG00000127124 146 0 0 67 22 24.7191 HIVEP3 0 genome.wustl.edu 37 1 42049693 42049693 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 42049693 42049693 T C SNP HIVEP3 ENST00000247584 human ensembl 74_37 -1 known missense c.776 p.Y259C 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors HIVEP3 HGNC ENSG00000127124 78 0 0 43 12 21.8182 SLC2A1 0 genome.wustl.edu 37 1 43394951 43394951 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 43394951 43394951 G A SNP SLC2A1 ENST00000426263 human ensembl 74_37 -1 known missense c.902 p.A301V 1.000 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt - no_errors SLC2A1 HGNC ENSG00000117394 37 0 0 10 3 23.0769 SLC6A9 0 genome.wustl.edu 37 1 44466469 44466469 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 44466469 44466469 G A SNP SLC6A9 ENST00000360584 human ensembl 74_37 -1 known silent c.1725 p.C575 1.000 pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1 - no_errors SLC6A9 HGNC ENSG00000196517 88 0 0 48 16 25 KLF17 0 genome.wustl.edu 37 1 44595230 44595230 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 44595230 44595230 G A SNP KLF17 ENST00000372299 human ensembl 74_37 +1 known missense c.287 p.R96H 0.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors KLF17 HGNC ENSG00000171872 176 0 0 98 37 27.4074 EIF2B3 0 genome.wustl.edu 37 1 45407195 45407195 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 45407195 45407195 T C SNP EIF2B3 ENST00000360403 human ensembl 74_37 -1 known missense c.437 p.K146R 1.000 NULL pfam_NTP_transferase - no_errors EIF2B3 HGNC ENSG00000070785 88 0 0 49 16 24.6154 STIL 0 genome.wustl.edu 37 1 47716920 47716920 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 47716920 47716920 A G SNP STIL ENST00000371877 human ensembl 74_37 -1 known missense c.3755 p.I1252T 0.049 NULL NULL - no_errors STIL HGNC ENSG00000123473 119 0 0 44 31 41.3333 ZCCHC11 0 genome.wustl.edu 37 1 52961127 52961127 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 52961127 52961127 A G SNP ZCCHC11 ENST00000257177 human ensembl 74_37 -1 known missense c.1238 p.V413A 1.000 NULL pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC - no_errors ZCCHC11 HGNC ENSG00000134744 51 0 0 31 11 26.1905 GPX7 0 genome.wustl.edu 37 1 53068182 53068182 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 53068182 53068182 G A SNP GPX7 ENST00000361314 human ensembl 74_37 +1 known missense c.101 p.R34Q 1.000 pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7 pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7 - no_errors GPX7 HGNC ENSG00000116157 23 0 0 10 5 33.3333 NDC1 0 genome.wustl.edu 37 1 54266463 54266463 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 54266463 54266463 A G SNP NDC1 ENST00000371429 human ensembl 74_37 -1 known silent c.1125 p.G375 1.000 pfam_Nucleoporin_prot_Ndc1/Nup pfam_Nucleoporin_prot_Ndc1/Nup - no_errors NDC1 HGNC ENSG00000058804 56 0 0 28 17 37.7778 TTC4 0 genome.wustl.edu 37 1 55186845 55186845 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 55186845 55186845 G A SNP TTC4 ENST00000371281 human ensembl 74_37 +1 known missense c.401 p.R134H 1.000 smart_TPR_repeat,pfscan_TPR-contain_dom smart_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC4 HGNC ENSG00000243725 64 0 0 28 10 26.3158 USP24 0 genome.wustl.edu 37 1 55548945 55548945 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 55548945 55548945 C A SNP USP24 ENST00000407756 human ensembl 74_37 -1 known missense c.6495 p.Q2165H 1.000 NULL pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67 - no_errors USP24 HGNC ENSG00000162402 46 0 0 37 3 7.5 PPAP2B 0 genome.wustl.edu 37 1 57002627 57002627 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 57002627 57002627 C T SNP PPAP2B ENST00000371250 human ensembl 74_37 -1 known silent c.297 p.A99 1.000 superfamily_P_Acid_Pase_2/haloperoxidase pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase - no_errors PPAP2B HGNC ENSG00000162407 170 0 0 100 39 28.0576 CHD5 0 genome.wustl.edu 37 1 6184642 6184642 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 6184642 6184642 G A SNP CHD5 ENST00000262450 human ensembl 74_37 -1 known missense c.4474 p.R1492W 1.000 pfam_DUF1086 pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD5 HGNC ENSG00000116254 42 0 0 22 5 18.5185 ALG6 0 genome.wustl.edu 37 1 63876940 63876940 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 63876940 63876940 C T SNP ALG6 ENST00000371108 human ensembl 74_37 +1 known silent c.618 p.H206 0.847 pfam_Glyco_trans_ALG6/ALG8 pfam_Glyco_trans_ALG6/ALG8 - no_errors ALG6 HGNC ENSG00000088035 85 0 0 38 12 24 CACHD1 0 genome.wustl.edu 37 1 65157288 65157288 + RNA SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 65157288 65157288 G T SNP CACHD1 ENST00000470527 human ensembl 74_37 +1 known rna NULL NULL 0.005 - - - no_errors CACHD1 HGNC ENSG00000158966 17 0 0 17 7 29.1667 RAVER2 0 genome.wustl.edu 37 1 65273087 65273087 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 65273087 65273087 C T SNP RAVER2 ENST00000294428 human ensembl 74_37 +1 known missense c.1610 p.A537V 0.002 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RAVER2 HGNC ENSG00000162437 52 0 0 38 2 5 LEPR 0 genome.wustl.edu 37 1 66088619 66088619 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 66088619 66088619 G A SNP LEPR ENST00000349533 human ensembl 74_37 +1 known silent c.2628 p.P876 0.995 NULL pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors LEPR HGNC ENSG00000116678 49 0 0 25 7 21.875 ZNF644 0 genome.wustl.edu 37 1 91405532 91405532 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 91405532 91405532 C T SNP ZNF644 ENST00000337393 human ensembl 74_37 -1 known missense c.1379 p.R460H 0.999 smart_Znf_C2H2-like,pfscan_Znf_C2H2 smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF644 HGNC ENSG00000122482 71 0 0 50 18 26.4706 GOT1 0 genome.wustl.edu 37 10 101180424 101180424 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 101180424 101180424 C T SNP GOT1 ENST00000370508 human ensembl 74_37 -1 known missense c.257 p.R86H 0.704 pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans - no_errors GOT1 HGNC ENSG00000120053 73 0 0 34 9 20.9302 FBXW4 0 genome.wustl.edu 37 10 103372106 103372106 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 103372106 103372106 C T SNP FBXW4 ENST00000331272 human ensembl 74_37 -1 known missense c.965 p.R322H 0.997 superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors FBXW4 HGNC ENSG00000107829 60 0 0 42 11 20.7547 MGEA5 0 genome.wustl.edu 37 10 103569961 103569961 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 103569961 103569961 A T SNP MGEA5 ENST00000361464 human ensembl 74_37 -1 known missense c.460 p.L154M 0.984 pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase - no_errors MGEA5 HGNC ENSG00000198408 94 0 0 47 16 25.3968 C10orf76 0 genome.wustl.edu 37 10 103766310 103766310 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 103766310 103766310 C T SNP C10orf76 ENST00000370033 human ensembl 74_37 -1 known silent c.1035 p.P345 0.020 superfamily_ARM-type_fold pfam_DUF1741,superfamily_ARM-type_fold - no_errors C10orf76 HGNC ENSG00000120029 143 0 0 92 35 27.5591 GBF1 0 genome.wustl.edu 37 10 104122262 104122262 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 104122262 104122262 A G SNP GBF1 ENST00000369983 human ensembl 74_37 +1 known missense c.1714 p.T572A 1.000 superfamily_ARM-type_fold pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom - no_errors GBF1 HGNC ENSG00000107862 168 0 0 145 13 8.22785 NFKB2 0 genome.wustl.edu 37 10 104161010 104161010 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 104161010 104161010 G A SNP NFKB2 ENST00000369966 human ensembl 74_37 +1 known silent c.2145 p.S715 0.892 NULL pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt - no_errors NFKB2 HGNC ENSG00000077150 117 0 0 52 24 31.5789 TMEM180 0 genome.wustl.edu 37 10 104230750 104230750 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 104230750 104230750 G A SNP TMEM180 ENST00000238936 human ensembl 74_37 +1 known missense c.580 p.A194T 0.075 superfamily_MFS_dom_general_subst_transpt superfamily_MFS_dom_general_subst_transpt - no_errors TMEM180 HGNC ENSG00000138111 149 0 0 59 45 43.2692 PDCD11 0 genome.wustl.edu 37 10 105174079 105174079 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 105174079 105174079 G A SNP PDCD11 ENST00000369797 human ensembl 74_37 +1 known missense c.1363 p.V455M 0.033 pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1 pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1 - no_errors PDCD11 HGNC ENSG00000148843 31 0 0 30 4 11.7647 ITPRIP 0 genome.wustl.edu 37 10 106074505 106074505 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 106074505 106074505 C A SNP ITPRIP ENST00000278071 human ensembl 74_37 -1 known silent c.1305 p.T435 0.034 NULL NULL - no_errors ITPRIP HGNC ENSG00000148841 44 0 0 16 12 42.8571 SORCS1 0 genome.wustl.edu 37 10 108466322 108466322 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 108466322 108466322 G A SNP SORCS1 ENST00000344440 human ensembl 74_37 -1 known missense c.1214 p.P405L 1.000 smart_VPS10 pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom - no_errors SORCS1 HGNC ENSG00000108018 83 0 0 42 16 27.5862 ADD3 0 genome.wustl.edu 37 10 111872584 111872584 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 111872584 111872584 G A SNP ADD3 ENST00000356080 human ensembl 74_37 +1 known missense c.245 p.G82D 1.000 NULL pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N - no_errors ADD3 HGNC ENSG00000148700 106 0 0 58 18 23.6842 WDR37 0 genome.wustl.edu 37 10 1149661 1149661 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 1149661 1149661 C T SNP WDR37 ENST00000263150 human ensembl 74_37 +1 known silent c.846 p.G282 0.416 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR37 HGNC ENSG00000047056 111 0 0 66 16 19.5122 DCLRE1A 0 genome.wustl.edu 37 10 115612924 115612924 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 115612924 115612924 G A SNP DCLRE1A ENST00000361384 human ensembl 74_37 -1 known silent c.18 p.S6 0.536 NULL pfam_DRMBL - no_errors DCLRE1A HGNC ENSG00000198924 16 0 0 7 3 30 ABLIM1 0 genome.wustl.edu 37 10 116361697 116361697 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 116361697 116361697 G T SNP ABLIM1 ENST00000277895 human ensembl 74_37 -1 known missense c.268 p.H90N 1.000 NULL pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 70 0 0 52 12 18.75 FAM160B1 0 genome.wustl.edu 37 10 116608484 116608484 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 116608484 116608484 C T SNP FAM160B1 ENST00000369248 human ensembl 74_37 +1 known silent c.1791 p.D597 0.837 NULL pfam_RetinoicA-induced_16-like - no_errors FAM160B1 HGNC ENSG00000151553 43 0 0 29 10 25.641 HSPA12A 0 genome.wustl.edu 37 10 118434405 118434405 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 118434405 118434405 G A SNP HSPA12A ENST00000369209 human ensembl 74_37 -1 known missense c.1915 p.R639W 1.000 NULL NULL - no_errors HSPA12A HGNC ENSG00000165868 102 0 0 58 18 23.6842 PDZD8 0 genome.wustl.edu 37 10 119078467 119078467 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 119078467 119078467 G T SNP PDZD8 ENST00000334464 human ensembl 74_37 -1 known silent c.1014 p.S338 1.000 NULL pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd - no_errors PDZD8 HGNC ENSG00000165650 74 0 0 75 5 6.25 BAG3 0 genome.wustl.edu 37 10 121436479 121436479 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 121436479 121436479 G T SNP BAG3 ENST00000369085 human ensembl 74_37 +1 known missense c.1413 p.E471D 0.985 pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain pfam_BAG_domain,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_dom - no_errors BAG3 HGNC ENSG00000151929 48 0 0 27 8 22.8571 MCMBP 0 genome.wustl.edu 37 10 121590963 121590963 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 121590963 121590963 T C SNP MCMBP ENST00000466047 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors MCMBP HGNC ENSG00000197771 42 0 0 35 11 23.913 WDR11 0 genome.wustl.edu 37 10 122626116 122626116 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 122626116 122626116 C T SNP WDR11 ENST00000263461 human ensembl 74_37 +1 known nonsense c.1030 p.R344* 0.997 superfamily_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat - no_errors WDR11 HGNC ENSG00000120008 126 0 0 75 29 27.8846 PTPRE 0 genome.wustl.edu 37 10 129861404 129861404 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 129861404 129861404 C T SNP PTPRE ENST00000254667 human ensembl 74_37 +1 known missense c.683 p.A228V 0.972 pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRE HGNC ENSG00000132334 50 0 0 28 12 30 UCMA 0 genome.wustl.edu 37 10 13276241 13276241 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 13276241 13276241 G A SNP UCMA ENST00000378681 human ensembl 74_37 -1 known silent c.18 p.A6 0.004 NULL NULL - no_errors UCMA HGNC ENSG00000165623 46 0 0 39 18 31.5789 GPR123 0 genome.wustl.edu 37 10 134906618 134906618 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 134906618 134906618 T C SNP GPR123 ENST00000607359 human ensembl 74_37 +1 putative missense c.1889 p.L630P 0.002 NULL pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like - no_errors GPR123 HGNC ENSG00000197177 22 0 0 10 3 23.0769 ADAM8 0 genome.wustl.edu 37 10 135084451 135084451 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 135084451 135084451 C A SNP ADAM8 ENST00000445355 human ensembl 74_37 -1 known missense c.1498 p.G500W 0.007 pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin - no_errors ADAM8 HGNC ENSG00000151651 59 0 0 21 11 34.375 SPRN 0 genome.wustl.edu 37 10 135237144 135237144 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 135237144 135237144 C T SNP SPRN ENST00000414069 human ensembl 74_37 -1 known silent c.42 p.A14 0.000 NULL NULL - no_errors SPRN HGNC ENSG00000203772 14 0 0 11 2 15.3846 FAM107B 0 genome.wustl.edu 37 10 14816291 14816291 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 14816291 14816291 G A SNP FAM107B ENST00000181796 human ensembl 74_37 -1 known silent c.372 p.H124 0.168 NULL pfam_DUF1151 - no_errors FAM107B HGNC ENSG00000065809 103 0 0 47 23 32.8571 RPP38 0 genome.wustl.edu 37 10 15145361 15145361 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 15145361 15145361 G A SNP RPP38 ENST00000378197 human ensembl 74_37 +1 known silent c.48 p.T16 0.022 NULL pfam_Ribosomal_L7Ae/L30e/S12e/Gad45 - no_errors RPP38 HGNC ENSG00000152464 103 0 0 49 18 26.8657 CUBN 0 genome.wustl.edu 37 10 17146512 17146512 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 17146512 17146512 A G SNP CUBN ENST00000377833 human ensembl 74_37 -1 known silent c.1323 p.C441 0.962 pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom - no_errors CUBN HGNC ENSG00000107611 54 0 0 32 6 15.7895 VIM 0 genome.wustl.edu 37 10 17275857 17275857 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 17275857 17275857 G A SNP VIM ENST00000224237 human ensembl 74_37 +1 known missense c.809 p.R270H 0.998 pfam_IF,superfamily_Prefoldin pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin - no_errors VIM HGNC ENSG00000026025 43 0 0 17 13 43.3333 NEBL 0 genome.wustl.edu 37 10 21106597 21106597 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 21106597 21106597 G A SNP NEBL ENST00000377122 human ensembl 74_37 -1 known missense c.2080 p.R694W 0.324 smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain - no_errors NEBL HGNC ENSG00000078114 103 0 0 48 23 32.3944 NEBL 0 genome.wustl.edu 37 10 21108359 21108359 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 21108359 21108359 C T SNP NEBL ENST00000377122 human ensembl 74_37 -1 known silent c.2049 p.L683 1.000 pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain - no_errors NEBL HGNC ENSG00000078114 199 0 0 83 45 35.1562 ACBD5 0 genome.wustl.edu 37 10 27499857 27499857 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 27499857 27499857 C A SNP ACBD5 ENST00000375888 human ensembl 74_37 -1 known nonsense c.1117 p.G373* 1.000 pirsf_M-assoc_diazepam-bd-inh pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein - no_errors ACBD5 HGNC ENSG00000107897 234 0 0 221 25 10.1626 MPP7 0 genome.wustl.edu 37 10 28378678 28378678 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 28378678 28378678 C T SNP MPP7 ENST00000337532 human ensembl 74_37 -1 known missense c.1045 p.A349T 1.000 superfamily_SH3_domain pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain - no_errors MPP7 HGNC ENSG00000150054 170 0 0 132 8 5.71429 ENSG00000212411 0 genome.wustl.edu 37 10 29864309 29864309 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 29864309 29864309 C T SNP ENSG00000212411 ENST00000391109 human ensembl 74_37 +1 novel rna NULL NULL 0.002 - - - no_errors SNORD115 RFAM ENSG00000212411 33 0 0 22 3 12 KIAA1462 0 genome.wustl.edu 37 10 30316208 30316208 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 30316208 30316208 C A SNP KIAA1462 ENST00000375377 human ensembl 74_37 -1 known nonsense c.2869 p.R957* 0.000 NULL NULL - no_errors KIAA1462 HGNC ENSG00000165757 83 0 0 50 22 30.5556 ZNF438 0 genome.wustl.edu 37 10 31134324 31134324 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 31134324 31134324 C A SNP ZNF438 ENST00000361310 human ensembl 74_37 -1 known nonsense c.2053 p.G685* 0.771 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF438 HGNC ENSG00000183621 96 0 0 56 22 28.2051 C10orf68 0 genome.wustl.edu 37 10 33000652 33000652 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 33000652 33000652 C T SNP C10orf68 ENST00000375025 human ensembl 74_37 +1 known missense c.484 p.R162C 0.000 NULL NULL - no_errors C10orf68 HGNC ENSG00000150076 32 0 0 24 9 27.2727 FZD8 0 genome.wustl.edu 37 10 35928685 35928685 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 35928685 35928685 C T SNP FZD8 ENST00000374694 human ensembl 74_37 -1 known missense c.1673 p.R558H 1.000 pfam_Frizzled,pfscan_GPCR_2-like pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled - no_errors FZD8 HGNC ENSG00000177283 60 0 0 20 6 23.0769 ZFAND4 0 genome.wustl.edu 37 10 46122477 46122477 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 46122477 46122477 C T SNP ZFAND4 ENST00000344646 human ensembl 74_37 -1 known missense c.794 p.R265H 1.000 NULL pfam_Ubiquitin_dom,pfam_Znf_AN1,smart_Ubiquitin_dom,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup,prints_Ubiquitin - no_errors ZFAND4 HGNC ENSG00000172671 107 1 0.925926 52 13 20 NPY4R 0 genome.wustl.edu 37 10 47087154 47087154 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 47087154 47087154 C T SNP NPY4R ENST00000374312 human ensembl 74_37 +1 known missense c.371 p.S124L 0.993 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt - no_errors NPY4R HGNC ENSG00000204174 317 0 0 176 38 17.757 GDF10 0 genome.wustl.edu 37 10 48429172 48429172 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 48429172 48429172 G A SNP GDF10 ENST00000224605 human ensembl 74_37 -1 known silent c.714 p.S238 0.000 pirsf_BMP3/GDF10 pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10 - no_errors GDF10 HGNC ENSG00000107623 23 0 0 10 6 37.5 SLC18A3 0 genome.wustl.edu 37 10 50819158 50819158 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 50819158 50819158 C T SNP SLC18A3 ENST00000374115 human ensembl 74_37 +1 known silent c.372 p.I124 0.990 pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC18A3 HGNC ENSG00000187714 162 0 0 66 30 31.25 PCDH15 0 genome.wustl.edu 37 10 55973753 55973753 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 55973753 55973753 A G SNP PCDH15 ENST00000320301 human ensembl 74_37 -1 known silent c.1041 p.L347 0.985 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH15 HGNC ENSG00000150275 85 0 0 35 12 25.5319 PCDH15 0 genome.wustl.edu 37 10 55973754 55973754 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 55973754 55973754 A C SNP PCDH15 ENST00000320301 human ensembl 74_37 -1 known missense c.1040 p.L347R 1.000 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH15 HGNC ENSG00000150275 84 0 0 44 5 10.2041 PCDH15 0 genome.wustl.edu 37 10 56077174 56077174 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 56077174 56077174 G A SNP PCDH15 ENST00000320301 human ensembl 74_37 -1 known nonsense c.733 p.R245* 0.980 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH15 HGNC ENSG00000150275 132 0 0 95 40 29.6296 BICC1 0 genome.wustl.edu 37 10 60273020 60273020 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 60273020 60273020 G A SNP BICC1 ENST00000373886 human ensembl 74_37 +1 known silent c.117 p.A39 0.997 NULL pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1 - no_errors BICC1 HGNC ENSG00000122870 58 0 0 21 14 40 HKDC1 0 genome.wustl.edu 37 10 71007271 71007271 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 71007271 71007271 G A SNP HKDC1 ENST00000354624 human ensembl 74_37 +1 known missense c.1187 p.R396H 1.000 pfam_Hexokinase_C pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase - no_errors HKDC1 HGNC ENSG00000156510 86 0 0 45 20 30.7692 TACR2 0 genome.wustl.edu 37 10 71175863 71175863 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 71175863 71175863 C T SNP TACR2 ENST00000373306 human ensembl 74_37 -1 known missense c.217 p.V73I 0.999 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt - no_errors TACR2 HGNC ENSG00000075073 41 0 0 15 12 44.4444 COL13A1 0 genome.wustl.edu 37 10 71562436 71562436 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 71562436 71562436 C T SNP COL13A1 ENST00000356340 human ensembl 74_37 +1 known missense c.257 p.T86M 0.997 NULL pfam_Collagen - no_errors COL13A1 HGNC ENSG00000197467 327 0 0 154 51 24.878 PALD1 0 genome.wustl.edu 37 10 72285747 72285747 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 72285747 72285747 G A SNP PALD1 ENST00000263563 human ensembl 74_37 +1 known missense c.40 p.A14T 0.089 NULL smart_Tyr_Pase_cat - no_errors PALD1 HGNC ENSG00000107719 74 0 0 38 16 29.6296 PRF1 0 genome.wustl.edu 37 10 72358862 72358862 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 72358862 72358862 G A SNP PRF1 ENST00000373209 human ensembl 74_37 -1 known silent c.615 p.N205 0.000 pfam_MACPF,smart_MACPF pfam_MACPF,pfam_C2_dom,superfamily_C2_dom,smart_MACPF,smart_C2_dom,pfscan_C2_dom - no_errors PRF1 HGNC ENSG00000180644 47 0 0 27 8 22.8571 KCNMA1 0 genome.wustl.edu 37 10 78872132 78872132 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 78872132 78872132 A G SNP KCNMA1 ENST00000406533 human ensembl 74_37 -1 known missense c.953 p.I318T 1.000 pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl - no_errors KCNMA1 HGNC ENSG00000156113 43 0 0 25 4 13.7931 POLR3A 0 genome.wustl.edu 37 10 79744971 79744971 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 79744971 79744971 C T SNP POLR3A ENST00000372371 human ensembl 74_37 -1 known missense c.3199 p.V1067M 1.000 pfam_RNA_pol_Rpb1_5 pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N - no_errors POLR3A HGNC ENSG00000148606 92 0 0 43 28 39.4366 EIF5AL1 0 genome.wustl.edu 37 10 81272647 81272647 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 81272647 81272647 T C SNP EIF5AL1 ENST00000520547 human ensembl 74_37 +1 known missense c.242 p.V81A 1.000 superfamily_Translation_prot_SH3-like,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A pfam_Transl_elong_IF5A_C,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A - no_errors EIF5AL1 HGNC ENSG00000253626 67 0 0 31 8 20.5128 MAT1A 0 genome.wustl.edu 37 10 82036321 82036321 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 82036321 82036321 G A SNP MAT1A ENST00000372213 human ensembl 74_37 -1 known silent c.579 p.G193 0.010 pfam_S-AdoMet_synt_central,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase - no_errors MAT1A HGNC ENSG00000151224 229 0 0 114 72 38.7097 NRG3 0 genome.wustl.edu 37 10 83635584 83635584 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 83635584 83635584 G T SNP NRG3 ENST00000404547 human ensembl 74_37 +1 known missense c.488 p.R163L 1.000 NULL pfscan_EG-like_dom - no_errors NRG3 HGNC ENSG00000185737 46 0 0 36 3 7.69231 CDHR1 0 genome.wustl.edu 37 10 85972965 85972965 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 85972965 85972965 C T SNP CDHR1 ENST00000372117 human ensembl 74_37 +1 known missense c.1901 p.S634F 0.999 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDHR1 HGNC ENSG00000148600 120 0 0 64 18 21.9512 PTEN 0 genome.wustl.edu 37 10 89653808 89653808 + Nonsense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 89653808 89653808 G T SNP PTEN ENST00000371953 human ensembl 74_37 +1 known nonsense c.106 p.G36* 1.000 smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_errors PTEN HGNC ENSG00000171862 95 0 0 43 12 21.8182 PTEN 0 genome.wustl.edu 37 10 89653842 89653842 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 89653842 89653842 G T SNP PTEN ENST00000371953 human ensembl 74_37 +1 known missense c.140 p.R47M 1.000 smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_errors PTEN HGNC ENSG00000171862 96 0 0 40 15 27.2727 HTR7 0 genome.wustl.edu 37 10 92509172 92509172 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 92509172 92509172 G A SNP HTR7 ENST00000336152 human ensembl 74_37 -1 known missense c.719 p.T240M 1.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt - no_errors HTR7 HGNC ENSG00000148680 72 0 0 34 12 26.087 CYP26A1 0 genome.wustl.edu 37 10 94834181 94834181 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 94834181 94834181 C T SNP CYP26A1 ENST00000224356 human ensembl 74_37 +1 known silent c.306 p.L102 0.992 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B - no_errors CYP26A1 HGNC ENSG00000095596 339 1 0.294118 190 91 32.3843 PDE6C 0 genome.wustl.edu 37 10 95381766 95381766 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 95381766 95381766 G A SNP PDE6C ENST00000371447 human ensembl 74_37 +1 known silent c.801 p.T267 0.847 pfam_GAF,smart_GAF pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE6C HGNC ENSG00000095464 72 0 0 47 20 29.8507 PIPSL 0 genome.wustl.edu 37 10 95721240 95721240 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 95721240 95721240 G A SNP PIPSL ENST00000480546 human ensembl 74_37 -1 putative rna NULL NULL 0.975 - - - no_errors PIPSL HGNC ENSG00000180764 132 0 0 53 24 31.1688 MORN4 0 genome.wustl.edu 37 10 99377012 99377012 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 99377012 99377012 A G SNP MORN4 ENST00000335628 human ensembl 74_37 -1 known silent c.309 p.N103 0.993 pfam_MORN,smart_MORN pfam_MORN,smart_MORN - no_errors MORN4 HGNC ENSG00000171160 174 0 0 109 33 23.2394 MORN4 0 genome.wustl.edu 37 10 99379386 99379386 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 99379386 99379386 T C SNP MORN4 ENST00000307450 human ensembl 74_37 -1 known missense c.25 p.T9A 1.000 NULL pfam_MORN,smart_MORN - no_errors MORN4 HGNC ENSG00000171160 86 0 0 57 20 25.974 MMP20 0 genome.wustl.edu 37 11 102487787 102487787 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 102487787 102487787 A G SNP MMP20 ENST00000260228 human ensembl 74_37 -1 known missense c.130 p.Y44H 0.980 pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A - no_errors MMP20 HGNC ENSG00000137674 39 0 0 23 4 14.8148 MMP10 0 genome.wustl.edu 37 11 102650323 102650323 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 102650323 102650323 G A SNP MMP10 ENST00000279441 human ensembl 74_37 -1 known missense c.259 p.R87C 0.607 pirsf_Pept_M10A_Metazoans,superfamily_Peptidoglycan-bd-like,prints_Pept_M10A pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A - no_errors MMP10 HGNC ENSG00000166670 31 0 0 22 8 26.6667 CWF19L2 0 genome.wustl.edu 37 11 107299920 107299920 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 107299920 107299920 C T SNP CWF19L2 ENST00000282251 human ensembl 74_37 -1 known silent c.1038 p.T346 0.000 NULL pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like - no_errors CWF19L2 HGNC ENSG00000152404 57 0 0 24 7 22.5806 ATM 0 genome.wustl.edu 37 11 108115583 108115583 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 108115583 108115583 C T SNP ATM ENST00000278616 human ensembl 74_37 +1 known missense c.731 p.A244V 0.997 NULL pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom - no_errors ATM HGNC ENSG00000149311 81 0 0 36 6 14.2857 NCAM1 0 genome.wustl.edu 37 11 113105857 113105857 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 113105857 113105857 C T SNP NCAM1 ENST00000316851 human ensembl 74_37 +1 known missense c.1766 p.A589V 0.016 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh - no_errors NCAM1 HGNC ENSG00000149294 26 0 0 12 4 25 USP28 0 genome.wustl.edu 37 11 113704197 113704197 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 113704197 113704197 G A SNP USP28 ENST00000003302 human ensembl 74_37 -1 known missense c.704 p.P235L 1.000 pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67 - no_errors USP28 HGNC ENSG00000048028 95 0 0 58 18 23.6842 APOA5 0 genome.wustl.edu 37 11 116661360 116661360 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 116661360 116661360 G A SNP APOA5 ENST00000227665 human ensembl 74_37 -1 known silent c.585 p.A195 0.992 pfam_ApoA1_A4_E pfam_ApoA1_A4_E - no_errors APOA5 HGNC ENSG00000110243 48 0 0 20 4 16.6667 APOA4 0 genome.wustl.edu 37 11 116692251 116692251 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 116692251 116692251 G T SNP APOA4 ENST00000357780 human ensembl 74_37 -1 known missense c.523 p.L175M 0.165 pfam_ApoA1_A4_E pfam_ApoA1_A4_E - no_errors APOA4 HGNC ENSG00000110244 149 0 0 75 29 27.8846 SIK3 0 genome.wustl.edu 37 11 116730138 116730138 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 116730138 116730138 G A SNP SIK3 ENST00000375300 human ensembl 74_37 -1 known missense c.2464 p.P822S 0.961 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom - no_errors SIK3 HGNC ENSG00000160584 60 0 0 52 8 13.3333 CEP164 0 genome.wustl.edu 37 11 117253626 117253626 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 117253626 117253626 G A SNP CEP164 ENST00000278935 human ensembl 74_37 +1 known silent c.1692 p.A564 0.000 NULL superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom - no_errors CEP164 HGNC ENSG00000110274 41 0 0 24 7 22.5806 CEP164 0 genome.wustl.edu 37 11 117265117 117265117 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 117265117 117265117 C T SNP CEP164 ENST00000278935 human ensembl 74_37 +1 known missense c.2668 p.R890C 1.000 NULL superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom - no_errors CEP164 HGNC ENSG00000110274 22 0 0 4 4 50 CEP164 0 genome.wustl.edu 37 11 117267320 117267320 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 117267320 117267320 T G SNP CEP164 ENST00000278935 human ensembl 74_37 +1 known missense c.3271 p.L1091V 0.056 NULL superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom - no_errors CEP164 HGNC ENSG00000110274 85 0 0 47 18 27.6923 DSCAML1 0 genome.wustl.edu 37 11 117376306 117376306 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 117376306 117376306 C T SNP DSCAML1 ENST00000321322 human ensembl 74_37 -1 known missense c.2105 p.G702D 1.000 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors DSCAML1 HGNC ENSG00000177103 76 0 0 34 15 30.6122 USP2 0 genome.wustl.edu 37 11 119243494 119243494 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 119243494 119243494 G A SNP USP2 ENST00000260187 human ensembl 74_37 -1 known missense c.697 p.R233C 0.997 NULL pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 - no_errors USP2 HGNC ENSG00000036672 87 0 0 33 20 37.7358 GRIK4 0 genome.wustl.edu 37 11 120702624 120702624 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 120702624 120702624 G A SNP GRIK4 ENST00000527524 human ensembl 74_37 +1 known missense c.575 p.R192H 1.000 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIK4 HGNC ENSG00000149403 124 0 0 69 29 29.5918 UBASH3B 0 genome.wustl.edu 37 11 122659932 122659932 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 122659932 122659932 C T SNP UBASH3B ENST00000284273 human ensembl 74_37 +1 known missense c.896 p.T299M 0.995 pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk - no_errors UBASH3B HGNC ENSG00000154127 247 0 0 133 48 26.5193 OR10G4 0 genome.wustl.edu 37 11 123886626 123886626 + Silent SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 123886626 123886626 A C SNP OR10G4 ENST00000320891 human ensembl 74_37 +1 known silent c.345 p.T115 0.063 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10G4 HGNC ENSG00000254737 113 0 0 63 14 18.1818 TBRG1 0 genome.wustl.edu 37 11 124496847 124496847 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 124496847 124496847 C T SNP TBRG1 ENST00000529543 human ensembl 74_37 +1 known missense c.269 p.P90L 0.688 NULL NULL - no_errors TBRG1 HGNC ENSG00000154144 14 0 0 13 3 18.75 ROBO3 0 genome.wustl.edu 37 11 124738967 124738967 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 124738967 124738967 G A SNP ROBO3 ENST00000397801 human ensembl 74_37 +1 known missense c.430 p.V144M 1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors ROBO3 HGNC ENSG00000154134 16 0 0 5 6 54.5455 ROBO4 0 genome.wustl.edu 37 11 124757063 124757063 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 124757063 124757063 C A SNP ROBO4 ENST00000306534 human ensembl 74_37 -1 known missense c.2245 p.A749S 0.946 NULL pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors ROBO4 HGNC ENSG00000154133 93 0 0 64 5 7.24638 CCDC15 0 genome.wustl.edu 37 11 124845023 124845023 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 124845023 124845023 G A SNP CCDC15 ENST00000344762 human ensembl 74_37 +1 known missense c.548 p.R183Q 0.244 NULL NULL - no_errors CCDC15 HGNC ENSG00000149548 21 0 0 10 6 37.5 PKNOX2 0 genome.wustl.edu 37 11 125281699 125281699 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 125281699 125281699 C T SNP PKNOX2 ENST00000298282 human ensembl 74_37 +1 known nonsense c.874 p.R292* 1.000 pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors PKNOX2 HGNC ENSG00000165495 89 0 0 40 20 33.3333 SRPR 0 genome.wustl.edu 37 11 126135202 126135202 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 126135202 126135202 G A SNP SRPR ENST00000332118 human ensembl 74_37 -1 known silent c.1272 p.C424 1.000 pfam_SRP54_GTPase_dom,pfam_ArgK,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_SRP54_GTPase_dom pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom - no_errors SRPR HGNC ENSG00000182934 68 0 0 29 17 36.9565 MUC5B 0 genome.wustl.edu 37 11 1264187 1264187 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 1264187 1264187 C T SNP MUC5B ENST00000447027 human ensembl 74_37 +1 known missense c.6086 p.T2029M 0.000 NULL pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C - no_errors MUC5B HGNC ENSG00000117983 232 1 0.429185 114 50 30.4878 MUC5B 0 genome.wustl.edu 37 11 1264682 1264682 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 1264682 1264682 C T SNP MUC5B ENST00000447027 human ensembl 74_37 +1 known missense c.6581 p.P2194L 0.000 NULL pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C - no_errors MUC5B HGNC ENSG00000117983 8 0 0 2 3 60 MUC5B 0 genome.wustl.edu 37 11 1271392 1271392 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 1271392 1271392 G A SNP MUC5B ENST00000447027 human ensembl 74_37 +1 known missense c.13291 p.A4431T 0.000 NULL pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C - no_errors MUC5B HGNC ENSG00000117983 311 0 0 128 51 28.4916 PRDM10 0 genome.wustl.edu 37 11 129802010 129802010 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 129802010 129802010 T C SNP PRDM10 ENST00000358825 human ensembl 74_37 -1 known missense c.1274 p.D425G 0.818 NULL pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors PRDM10 HGNC ENSG00000170325 120 0 0 69 16 18.8235 PRDM10 0 genome.wustl.edu 37 11 129802014 129802014 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 129802014 129802014 T A SNP PRDM10 ENST00000358825 human ensembl 74_37 -1 known missense c.1270 p.S424C 1.000 NULL pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors PRDM10 HGNC ENSG00000170325 121 0 0 66 17 20.4819 PRDM10 0 genome.wustl.edu 37 11 129802017 129802017 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 129802017 129802017 T C SNP PRDM10 ENST00000358825 human ensembl 74_37 -1 known missense c.1267 p.K423E 0.983 NULL pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors PRDM10 HGNC ENSG00000170325 119 0 0 65 16 19.7531 IGSF9B 0 genome.wustl.edu 37 11 133814114 133814114 + Splice_Site SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 133814114 133814114 C T SNP IGSF9B ENST00000321016 human ensembl 74_37 -1 known splice_site c.409+1 e3+1 1.000 - - - no_errors IGSF9B HGNC ENSG00000080854 38 0 0 13 6 31.5789 NCAPD3 0 genome.wustl.edu 37 11 134063940 134063940 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 134063940 134063940 C T SNP NCAPD3 ENST00000534548 human ensembl 74_37 -1 known missense c.1795 p.A599T 1.000 superfamily_ARM-type_fold,pirsf_NCAPD3 superfamily_ARM-type_fold,pirsf_NCAPD3 - no_errors NCAPD3 HGNC ENSG00000151503 71 0 0 25 7 21.875 INSC 0 genome.wustl.edu 37 11 15247376 15247376 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 15247376 15247376 T C SNP INSC ENST00000379554 human ensembl 74_37 +1 known splice_site c.1311+2 e9+2 1.000 - - - no_errors INSC HGNC ENSG00000188487 21 0 0 8 9 52.9412 SAA2 0 genome.wustl.edu 37 11 18266953 18266953 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 18266953 18266953 G A SNP SAA2 ENST00000256733 human ensembl 74_37 -1 known nonsense c.340 p.R114* 0.075 pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A - no_errors SAA2 HGNC ENSG00000134339 99 0 0 35 18 33.9623 SPTY2D1 0 genome.wustl.edu 37 11 18636955 18636955 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 18636955 18636955 T C SNP SPTY2D1 ENST00000336349 human ensembl 74_37 -1 known missense c.866 p.K289R 1.000 NULL pfam_Chromatin_SPT2,smart_Chromatin_SPT2 - no_errors SPTY2D1 HGNC ENSG00000179119 60 0 0 29 13 30.9524 MRGPRX1 0 genome.wustl.edu 37 11 18955405 18955405 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 18955405 18955405 A G SNP MRGPRX1 ENST00000302797 human ensembl 74_37 -1 known silent c.927 p.P309 0.855 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors MRGPRX1 HGNC ENSG00000170255 65 0 0 37 4 9.7561 CSRP3 0 genome.wustl.edu 37 11 19213981 19213981 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 19213981 19213981 G A SNP CSRP3 ENST00000265968 human ensembl 74_37 -1 known silent c.15 p.G5 0.189 NULL pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM - no_errors CSRP3 HGNC ENSG00000129170 46 0 0 34 11 24.4444 NAV2 0 genome.wustl.edu 37 11 19961240 19961240 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 19961240 19961240 C T SNP NAV2 ENST00000396087 human ensembl 74_37 +1 known silent c.2136 p.A712 0.995 NULL pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain - no_errors NAV2 HGNC ENSG00000166833 62 0 0 44 10 18.5185 IGF2 0 genome.wustl.edu 37 11 2154748 2154748 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 2154748 2154748 G A SNP IGF2 ENST00000434045 human ensembl 74_37 -1 known missense c.473 p.P158L 1.000 NULL pfam_IGF2_C,pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_IGF2,prints_Insulin_family,prints_Insulin-like_growth_factor - no_errors IGF2 HGNC ENSG00000167244 35 0 0 17 10 37.037 IMMP1L 0 genome.wustl.edu 37 11 31484842 31484842 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 31484842 31484842 C T SNP IMMP1L ENST00000527184 human ensembl 74_37 -1 known rna NULL NULL 0.980 - - - no_errors IMMP1L HGNC ENSG00000148950 57 0 0 29 10 25.641 KIAA1549L 0 genome.wustl.edu 37 11 33565470 33565470 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 33565470 33565470 G A SNP KIAA1549L ENST00000389726 human ensembl 74_37 +1 known silent c.1470 p.V490 0.000 NULL NULL - no_errors KIAA1549L HGNC ENSG00000110427 93 0 0 51 19 27.1429 ABTB2 0 genome.wustl.edu 37 11 34194817 34194817 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 34194817 34194817 G A SNP ABTB2 ENST00000435224 human ensembl 74_37 -1 known missense c.1282 p.R428C 1.000 NULL pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like - no_errors ABTB2 HGNC ENSG00000166016 14 0 0 11 5 31.25 LDLRAD3 0 genome.wustl.edu 37 11 36250715 36250715 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 36250715 36250715 C T SNP LDLRAD3 ENST00000315571 human ensembl 74_37 +1 known missense c.806 p.A269V 0.385 NULL pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt - no_errors LDLRAD3 HGNC ENSG00000179241 334 0 0 181 61 25.2066 RAG1 0 genome.wustl.edu 37 11 36596057 36596057 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 36596057 36596057 G A SNP RAG1 ENST00000299440 human ensembl 74_37 +1 known silent c.1203 p.S401 0.011 NULL pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING - no_errors RAG1 HGNC ENSG00000166349 80 0 0 37 19 33.9286 NUP98 0 genome.wustl.edu 37 11 3720468 3720468 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 3720468 3720468 G A SNP NUP98 ENST00000324932 human ensembl 74_37 -1 known nonsense c.3853 p.R1285* 1.000 NULL pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59 - no_errors NUP98 HGNC ENSG00000110713 171 0 0 86 38 30.6452 B4GALNT4 0 genome.wustl.edu 37 11 376350 376350 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 376350 376350 C T SNP B4GALNT4 ENST00000329962 human ensembl 74_37 +1 known silent c.1296 p.D432 0.531 NULL pfam_Chond_GalNAc,pfam_PA14,smart_PA14 - no_errors B4GALNT4 HGNC ENSG00000182272 52 0 0 21 11 34.375 GYLTL1B 0 genome.wustl.edu 37 11 45949753 45949753 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 45949753 45949753 G A SNP GYLTL1B ENST00000325468 human ensembl 74_37 +1 known missense c.1780 p.A594T 0.991 NULL pfam_Glyco_trans_8 - no_errors GYLTL1B HGNC ENSG00000165905 129 0 0 42 23 35.3846 CHRM4 0 genome.wustl.edu 37 11 46406889 46406889 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 46406889 46406889 G A SNP CHRM4 ENST00000433765 human ensembl 74_37 -1 known silent c.1219 p.L407 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt - no_errors CHRM4 HGNC ENSG00000180720 34 0 0 16 7 30.4348 NUP160 0 genome.wustl.edu 37 11 47814391 47814391 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 47814391 47814391 G A SNP NUP160 ENST00000378460 human ensembl 74_37 -1 known nonsense c.3397 p.R1133* 0.999 NULL pfam_Nucleoporin_Nup160 - no_errors NUP160 HGNC ENSG00000030066 152 0 0 91 41 31.0606 PTPRJ 0 genome.wustl.edu 37 11 48145173 48145173 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 48145173 48145173 C A SNP PTPRJ ENST00000418331 human ensembl 74_37 +1 known missense c.625 p.P209T 0.006 superfamily_Fibronectin_type3,smart_Fibronectin_type3 pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRJ HGNC ENSG00000149177 43 0 0 30 5 14.2857 OR4S1 0 genome.wustl.edu 37 11 48328602 48328602 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 48328602 48328602 G A SNP OR4S1 ENST00000319988 human ensembl 74_37 +1 known missense c.828 p.M276I 0.001 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4S1 HGNC ENSG00000176555 123 0 0 73 29 28.4314 OR4S2 0 genome.wustl.edu 37 11 55418833 55418833 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 55418833 55418833 T C SNP OR4S2 ENST00000312422 human ensembl 74_37 +1 known silent c.454 p.L152 0.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4S2 HGNC ENSG00000174982 209 0 0 101 38 27.3381 OR8H3 0 genome.wustl.edu 37 11 55890450 55890450 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 55890450 55890450 T A SNP OR8H3 ENST00000313472 human ensembl 74_37 +1 known missense c.602 p.I201N 0.001 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR8H3 HGNC ENSG00000181761 199 0 0 122 42 25.6098 OR5J2 0 genome.wustl.edu 37 11 55944198 55944198 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 55944198 55944198 C T SNP OR5J2 ENST00000312298 human ensembl 74_37 +1 known silent c.105 p.Y35 0.110 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt - no_errors OR5J2 HGNC ENSG00000174957 164 0 0 99 33 25 TNKS1BP1 0 genome.wustl.edu 37 11 57080198 57080198 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 57080198 57080198 C T SNP TNKS1BP1 ENST00000358252 human ensembl 74_37 -1 known missense c.1964 p.R655Q 0.000 NULL NULL - no_errors TNKS1BP1 HGNC ENSG00000149115 40 0 0 21 3 12.5 OR10Q1 0 genome.wustl.edu 37 11 57995829 57995829 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 57995829 57995829 G A SNP OR10Q1 ENST00000316770 human ensembl 74_37 -1 known silent c.519 p.C173 0.051 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10Q1 HGNC ENSG00000180475 48 0 0 27 11 28.9474 ZFP91 0 genome.wustl.edu 37 11 58385066 58385066 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 58385066 58385066 A T SNP ZFP91 ENST00000316059 human ensembl 74_37 +1 known missense c.1600 p.I534F 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZFP91 HGNC ENSG00000186660 67 0 0 47 10 17.5439 OR52E6 0 genome.wustl.edu 37 11 5863113 5863113 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 5863113 5863113 G A SNP OR52E6 ENST00000379946 human ensembl 74_37 -1 known silent c.27 p.N9 0.002 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR52E6 HGNC ENSG00000205409 43 0 0 23 18 43.9024 OR5A1 0 genome.wustl.edu 37 11 59211158 59211158 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 59211158 59211158 G A SNP OR5A1 ENST00000302030 human ensembl 74_37 +1 known missense c.517 p.G173R 0.708 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM - no_errors OR5A1 HGNC ENSG00000172320 308 0 0 203 55 21.3178 STX3 0 genome.wustl.edu 37 11 59560902 59560902 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 59560902 59560902 G A SNP STX3 ENST00000337979 human ensembl 74_37 +1 known missense c.590 p.R197Q 0.997 pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom - no_errors STX3 HGNC ENSG00000166900 56 0 0 45 12 21.0526 MS4A1 0 genome.wustl.edu 37 11 60230571 60230571 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 60230571 60230571 T C SNP MS4A1 ENST00000345732 human ensembl 74_37 +1 known missense c.256 p.Y86H 1.000 pfam_CD20-like pfam_CD20-like - no_errors MS4A1 HGNC ENSG00000156738 100 0 0 64 26 28.8889 MS4A10 0 genome.wustl.edu 37 11 60557821 60557821 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 60557821 60557821 G T SNP MS4A10 ENST00000308287 human ensembl 74_37 +1 known missense c.13 p.A5S 0.004 NULL pfam_CD20-like - no_errors MS4A10 HGNC ENSG00000172689 108 0 0 43 22 33.8462 SLC15A3 0 genome.wustl.edu 37 11 60711286 60711286 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 60711286 60711286 G A SNP SLC15A3 ENST00000227880 human ensembl 74_37 -1 known silent c.871 p.L291 1.000 pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt - no_errors SLC15A3 HGNC ENSG00000110446 30 0 0 7 4 36.3636 DDB1 0 genome.wustl.edu 37 11 61079513 61079513 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 61079513 61079513 C T SNP DDB1 ENST00000301764 human ensembl 74_37 -1 known missense c.2113 p.D705N 1.000 NULL pfam_Cleavage/polyA-sp_fac_asu_C - no_errors DDB1 HGNC ENSG00000167986 203 0 0 117 42 26.4151 MYRF 0 genome.wustl.edu 37 11 61539203 61539203 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 61539203 61539203 G A SNP MYRF ENST00000278836 human ensembl 74_37 +1 known silent c.972 p.P324 0.392 NULL pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd - no_errors MYRF HGNC ENSG00000124920 159 0 0 87 21 19.4444 MYRF 0 genome.wustl.edu 37 11 61541548 61541548 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 61541548 61541548 G A SNP MYRF ENST00000278836 human ensembl 74_37 +1 known missense c.1225 p.G409S 1.000 pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd - no_errors MYRF HGNC ENSG00000124920 47 0 0 12 10 45.4545 RAB3IL1 0 genome.wustl.edu 37 11 61672092 61672092 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 61672092 61672092 C T SNP RAB3IL1 ENST00000394836 human ensembl 74_37 -1 known silent c.825 p.T275 0.833 NULL pfam_Sec2p - no_errors RAB3IL1 HGNC ENSG00000167994 48 0 0 24 10 29.4118 EML3 0 genome.wustl.edu 37 11 62376578 62376578 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 62376578 62376578 C T SNP EML3 ENST00000529309 human ensembl 74_37 -1 known missense c.785 p.R262H 1.000 pfam_HELP,superfamily_WD40_repeat_dom pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors EML3 HGNC ENSG00000149499 146 0 0 77 28 26.6667 TMEM179B 0 genome.wustl.edu 37 11 62557411 62557411 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 62557411 62557411 C T SNP TMEM179B ENST00000333449 human ensembl 74_37 +1 known silent c.552 p.V184 0.001 NULL NULL - no_errors TMEM179B HGNC ENSG00000185475 210 0 0 103 40 27.972 NXF1 0 genome.wustl.edu 37 11 62569689 62569689 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 62569689 62569689 A G SNP NXF1 ENST00000294172 human ensembl 74_37 -1 known missense c.413 p.M138T 0.965 pfam_Tap_RNA-bd pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk - no_errors NXF1 HGNC ENSG00000162231 39 0 0 21 13 38.2353 OTUB1 0 genome.wustl.edu 37 11 63764868 63764868 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 63764868 63764868 G A SNP OTUB1 ENST00000422031 human ensembl 74_37 +1 known silent c.777 p.A259 0.701 pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU - no_errors OTUB1 HGNC ENSG00000167770 84 0 0 33 17 34 FERMT3 0 genome.wustl.edu 37 11 63978892 63978892 + Silent SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 63978892 63978892 A C SNP FERMT3 ENST00000279227 human ensembl 74_37 +1 known silent c.660 p.S220 0.023 smart_Band_41_domain pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors FERMT3 HGNC ENSG00000149781 18 0 0 11 2 15.3846 RPS6KA4 0 genome.wustl.edu 37 11 64137189 64137189 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 64137189 64137189 G A SNP RPS6KA4 ENST00000334205 human ensembl 74_37 +1 known missense c.1621 p.D541N 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom - no_errors RPS6KA4 HGNC ENSG00000162302 53 0 0 25 5 16.6667 PYGM 0 genome.wustl.edu 37 11 64527250 64527250 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 64527250 64527250 C T SNP PYGM ENST00000164139 human ensembl 74_37 -1 known missense c.121 p.V41I 1.000 pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas - no_errors PYGM HGNC ENSG00000068976 334 0 0 166 76 31.405 ATG2A 0 genome.wustl.edu 37 11 64668525 64668525 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 64668525 64668525 C T SNP ATG2A ENST00000421419 human ensembl 74_37 -1 known missense c.4165 p.G1389S 0.997 NULL pfam_Autophagy-rel_C - no_errors ATG2A HGNC ENSG00000110046 11 0 0 7 5 41.6667 ZFPL1 0 genome.wustl.edu 37 11 64854021 64854021 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 64854021 64854021 G A SNP ZFPL1 ENST00000294258 human ensembl 74_37 +1 known missense c.349 p.A117T 0.001 NULL NULL - no_errors ZFPL1 HGNC ENSG00000162300 137 0 0 71 27 27.551 MAP3K11 0 genome.wustl.edu 37 11 65367021 65367021 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 65367021 65367021 C T SNP MAP3K11 ENST00000309100 human ensembl 74_37 -1 known missense c.2050 p.A684T 0.000 pirsf_MAPKKK9/10/11 pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom - no_errors MAP3K11 HGNC ENSG00000173327 130 0 0 57 22 27.8481 CFL1 0 genome.wustl.edu 37 11 65623611 65623611 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 65623611 65623611 C T SNP CFL1 ENST00000308162 human ensembl 74_37 -1 known missense c.106 p.V36M 0.999 pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin - no_errors CFL1 HGNC ENSG00000172757 100 0 0 48 13 21.3115 FIBP 0 genome.wustl.edu 37 11 65651890 65651890 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 65651890 65651890 G A SNP FIBP ENST00000338369 human ensembl 74_37 -1 known missense c.998 p.A333V 0.586 pfam_FIBP pfam_FIBP - no_errors FIBP HGNC ENSG00000172500 56 0 0 22 9 29.0323 SART1 0 genome.wustl.edu 37 11 65732567 65732567 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 65732567 65732567 G T SNP SART1 ENST00000530251 human ensembl 74_37 +1 known missense c.473 p.R158L 0.982 NULL pfam_SART_1 - no_errors SART1 HGNC ENSG00000175467 53 0 0 27 10 27.027 CD248 0 genome.wustl.edu 37 11 66084234 66084234 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 66084234 66084234 G A SNP CD248 ENST00000311330 human ensembl 74_37 -1 known missense c.265 p.R89W 1.000 pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin - no_errors CD248 HGNC ENSG00000174807 35 0 0 10 13 56.5217 DCHS1 0 genome.wustl.edu 37 11 6651700 6651700 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 6651700 6651700 G A SNP DCHS1 ENST00000299441 human ensembl 74_37 -1 known missense c.4325 p.A1442V 0.992 superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors DCHS1 HGNC ENSG00000166341 9 0 0 4 4 50 PPP1CA 0 genome.wustl.edu 37 11 67168671 67168671 + Splice_Site SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 67168671 67168671 C T SNP PPP1CA ENST00000376745 human ensembl 74_37 -1 known splice_site c.56-1 e2-1 1.000 - - - no_errors PPP1CA HGNC ENSG00000172531 156 0 0 66 19 22.3529 TBC1D10C 0 genome.wustl.edu 37 11 67177171 67177171 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 67177171 67177171 G T SNP TBC1D10C ENST00000312390 human ensembl 74_37 +1 known missense c.1287 p.E429D 0.617 NULL pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D10C HGNC ENSG00000175463 33 0 0 18 3 14.2857 CABP4 0 genome.wustl.edu 37 11 67223133 67223133 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 67223133 67223133 C T SNP CABP4 ENST00000325656 human ensembl 74_37 +1 known missense c.239 p.P80L 0.000 NULL pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors CABP4 HGNC ENSG00000175544 37 0 0 12 10 45.4545 SUV420H1 0 genome.wustl.edu 37 11 67926307 67926307 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 67926307 67926307 G A SNP SUV420H1 ENST00000304363 human ensembl 74_37 -1 known silent c.1506 p.A502 0.000 NULL pfam_SET_dom,smart_SET_dom,pfscan_SET_dom - no_errors SUV420H1 HGNC ENSG00000110066 70 0 0 17 13 43.3333 LRP5 0 genome.wustl.edu 37 11 68191056 68191056 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 68191056 68191056 G A SNP LRP5 ENST00000294304 human ensembl 74_37 +1 known missense c.3127 p.E1043K 0.998 pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt - no_errors LRP5 HGNC ENSG00000162337 186 0 0 76 52 40.625 CTTN 0 genome.wustl.edu 37 11 70277334 70277334 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 70277334 70277334 C T SNP CTTN ENST00000301843 human ensembl 74_37 +1 known missense c.1214 p.S405L 0.951 superfamily_SH3_domain,prints_p67phox pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox - no_errors CTTN HGNC ENSG00000085733 192 0 0 140 42 23.0769 CLPB 0 genome.wustl.edu 37 11 72004579 72004579 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 72004579 72004579 C A SNP CLPB ENST00000294053 human ensembl 74_37 -1 known silent c.1956 p.T652 0.013 pfam_Clp_ATPase_C,superfamily_P-loop_NTPase pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors CLPB HGNC ENSG00000162129 55 0 0 28 8 22.2222 P2RY6 0 genome.wustl.edu 37 11 73007984 73007984 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 73007984 73007984 C T SNP P2RY6 ENST00000349767 human ensembl 74_37 +1 known missense c.421 p.R141C 0.680 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y3_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt - no_errors P2RY6 HGNC ENSG00000171631 57 0 0 29 10 25.641 DNAJB13 0 genome.wustl.edu 37 11 73662142 73662142 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 73662142 73662142 G A SNP DNAJB13 ENST00000339764 human ensembl 74_37 +1 known missense c.28 p.G10R 0.893 pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain - no_errors DNAJB13 HGNC ENSG00000187726 52 0 0 37 13 26 UVRAG 0 genome.wustl.edu 37 11 75562938 75562938 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 75562938 75562938 G A SNP UVRAG ENST00000356136 human ensembl 74_37 +1 known missense c.128 p.R43Q 1.000 superfamily_C2_dom,smart_C2_dom pfam_C2_dom,superfamily_C2_dom,smart_C2_dom - no_errors UVRAG HGNC ENSG00000198382 92 0 0 63 29 31.5217 GDPD4 0 genome.wustl.edu 37 11 76944092 76944092 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 76944092 76944092 A G SNP GDPD4 ENST00000376217 human ensembl 74_37 -1 known missense c.1367 p.L456P 0.022 superfamily_PLC-like_Pdiesterase_TIM-brl pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl - no_errors GDPD4 HGNC ENSG00000178795 48 0 0 33 14 29.7872 GAB2 0 genome.wustl.edu 37 11 77934561 77934561 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 77934561 77934561 T C SNP GAB2 ENST00000361507 human ensembl 74_37 -1 known silent c.1464 p.S488 0.420 NULL pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors GAB2 HGNC ENSG00000033327 175 0 0 93 22 19.1304 PRCP 0 genome.wustl.edu 37 11 82561043 82561043 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 82561043 82561043 C T SNP PRCP ENST00000393399 human ensembl 74_37 -1 known missense c.727 p.V243I 1.000 pfam_Peptidase_S28 pfam_Peptidase_S28 - no_errors PRCP HGNC ENSG00000137509 39 0 0 23 11 32.3529 C11orf82 0 genome.wustl.edu 37 11 82644690 82644690 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 82644690 82644690 A G SNP C11orf82 ENST00000430323 human ensembl 74_37 +1 known silent c.2310 p.P770 0.858 NULL pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold - no_errors C11orf82 HGNC ENSG00000165490 49 0 0 21 14 40 DLG2 0 genome.wustl.edu 37 11 83770433 83770433 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 83770433 83770433 C T SNP DLG2 ENST00000376104 human ensembl 74_37 -1 known missense c.844 p.V282I 0.999 pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like - no_errors DLG2 HGNC ENSG00000150672 70 0 0 43 13 23.2143 CCDC89 0 genome.wustl.edu 37 11 85396668 85396668 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 85396668 85396668 A G SNP CCDC89 ENST00000316398 human ensembl 74_37 -1 known missense c.506 p.L169P 0.032 NULL NULL - no_errors CCDC89 HGNC ENSG00000179071 109 0 0 44 14 24.1379 GRM5 0 genome.wustl.edu 37 11 88583111 88583111 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 88583111 88583111 G A SNP GRM5 ENST00000305447 human ensembl 74_37 -1 known missense c.874 p.R292C 1.000 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C - no_errors GRM5 HGNC ENSG00000168959 79 0 0 46 7 13.2075 FAT3 0 genome.wustl.edu 37 11 92533683 92533683 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 92533683 92533683 G A SNP FAT3 ENST00000298047 human ensembl 74_37 +1 known missense c.7504 p.V2502I 1.000 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT3 HGNC ENSG00000165323 32 0 0 8 4 33.3333 MTNR1B 0 genome.wustl.edu 37 11 92703084 92703084 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 92703084 92703084 G A SNP MTNR1B ENST00000257068 human ensembl 74_37 +1 known missense c.193 p.V65M 0.995 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Mel_1A_rcpt - no_errors MTNR1B HGNC ENSG00000134640 32 0 0 15 7 31.8182 PANX1 0 genome.wustl.edu 37 11 93912987 93912987 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 93912987 93912987 C T SNP PANX1 ENST00000227638 human ensembl 74_37 +1 known silent c.765 p.N255 0.634 pfscan_Innexin pfam_Innexin,pfscan_Innexin - no_errors PANX1 HGNC ENSG00000110218 167 0 0 113 37 24.6667 ANKRD49 0 genome.wustl.edu 37 11 94231635 94231635 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 94231635 94231635 A G SNP ANKRD49 ENST00000302755 human ensembl 74_37 +1 known silent c.657 p.T219 0.080 superfamily_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors ANKRD49 HGNC ENSG00000168876 116 0 0 85 21 19.8113 UTP20 0 genome.wustl.edu 37 12 101739426 101739426 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 101739426 101739426 A G SNP UTP20 ENST00000261637 human ensembl 74_37 +1 known missense c.4700 p.Y1567C 0.531 superfamily_ARM-type_fold pfam_DRIM,superfamily_ARM-type_fold - no_errors UTP20 HGNC ENSG00000120800 103 0 0 46 13 22.0339 GNPTAB 0 genome.wustl.edu 37 12 102164318 102164318 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 102164318 102164318 C T SNP GNPTAB ENST00000299314 human ensembl 74_37 -1 known missense c.979 p.E327K 1.000 pfam_DUF3184 pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom - no_errors GNPTAB HGNC ENSG00000111670 47 0 0 23 14 37.8378 ASCL1 0 genome.wustl.edu 37 12 103352324 103352324 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 103352324 103352324 G A SNP ASCL1 ENST00000266744 human ensembl 74_37 +1 known missense c.302 p.R101H 1.000 pfscan_bHLH_dom pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom - no_errors ASCL1 HGNC ENSG00000139352 13 0 0 5 3 37.5 C12orf42 0 genome.wustl.edu 37 12 103696040 103696040 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 103696040 103696040 G A SNP C12orf42 ENST00000378113 human ensembl 74_37 -1 known missense c.929 p.A310V 0.864 NULL NULL - no_errors C12orf42 HGNC ENSG00000179088 52 0 0 25 8 24.2424 STAB2 0 genome.wustl.edu 37 12 104078853 104078853 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 104078853 104078853 C T SNP STAB2 ENST00000388887 human ensembl 74_37 +1 known silent c.2988 p.N996 0.458 superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,pfscan_FAS1_domain pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link - no_errors STAB2 HGNC ENSG00000136011 129 0 0 60 23 27.7108 RIC8B 0 genome.wustl.edu 37 12 107208552 107208552 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 107208552 107208552 C T SNP RIC8B ENST00000392837 human ensembl 74_37 +1 known missense c.211 p.R71C 1.000 pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn - no_errors RIC8B HGNC ENSG00000111785 74 0 0 41 14 25.4545 DAO 0 genome.wustl.edu 37 12 109278931 109278931 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 109278931 109278931 G A SNP DAO ENST00000228476 human ensembl 74_37 +1 known missense c.149 p.G50D 1.000 pfam_FAD-dep_OxRdtase pfam_FAD-dep_OxRdtase - no_errors DAO HGNC ENSG00000110887 181 0 0 79 42 34.7107 ANAPC7 0 genome.wustl.edu 37 12 110811943 110811943 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 110811943 110811943 G A SNP ANAPC7 ENST00000481473 human ensembl 74_37 -1 known rna NULL NULL 0.007 - - - no_errors ANAPC7 HGNC ENSG00000196510 110 0 0 48 25 34.2466 MYL2 0 genome.wustl.edu 37 12 111356964 111356964 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 111356964 111356964 C T SNP MYL2 ENST00000228841 human ensembl 74_37 -1 known missense c.37 p.A13T 1.000 NULL pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors MYL2 HGNC ENSG00000111245 46 0 0 25 17 40.4762 CUX2 0 genome.wustl.edu 37 12 111785560 111785560 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 111785560 111785560 A G SNP CUX2 ENST00000261726 human ensembl 74_37 +1 known missense c.3892 p.I1298V 1.000 NULL pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT - no_errors CUX2 HGNC ENSG00000111249 44 0 0 25 10 28.5714 FAM109A 0 genome.wustl.edu 37 12 111800988 111800988 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 111800988 111800988 G A SNP FAM109A ENST00000361483 human ensembl 74_37 -1 known missense c.283 p.R95C 1.000 pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors FAM109A HGNC ENSG00000198324 39 0 0 21 7 25 TAS2R31 0 genome.wustl.edu 37 12 11183704 11183704 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 11183704 11183704 A G SNP TAS2R31 ENST00000390675 human ensembl 74_37 -1 known silent c.231 p.S77 0.000 pfam_TAS2_rcpt pfam_TAS2_rcpt - no_errors TAS2R31 HGNC ENSG00000256436 129 0 0 102 8 7.27273 NAA25 0 genome.wustl.edu 37 12 112485518 112485518 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 112485518 112485518 G A SNP NAA25 ENST00000261745 human ensembl 74_37 -1 known nonsense c.1957 p.R653* 1.000 pfam_N-acetylTrfase_B_cplx_non-cat pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom - no_errors NAA25 HGNC ENSG00000111300 257 0 0 117 51 30.3571 DTX1 0 genome.wustl.edu 37 12 113515382 113515382 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 113515382 113515382 C T SNP DTX1 ENST00000257600 human ensembl 74_37 +1 known missense c.413 p.P138L 1.000 pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING - no_errors DTX1 HGNC ENSG00000135144 49 0 0 32 8 20 PRB4 0 genome.wustl.edu 37 12 11461556 11461556 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 11461556 11461556 C A SNP PRB4 ENST00000279575 human ensembl 74_37 -1 known nonsense c.361 p.E121* 0.000 NULL NULL - no_errors PRB4 HGNC ENSG00000230657 342 1 0.291545 197 45 18.595 PRB4 0 genome.wustl.edu 37 12 11461619 11461619 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 11461619 11461619 C A SNP PRB4 ENST00000279575 human ensembl 74_37 -1 known nonsense c.298 p.E100* 0.001 NULL NULL - no_errors PRB4 HGNC ENSG00000230657 600 0 0 345 48 12.2137 KSR2 0 genome.wustl.edu 37 12 118199032 118199032 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 118199032 118199032 G A SNP KSR2 ENST00000339824 human ensembl 74_37 -1 known missense c.770 p.A257V 0.402 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom - no_errors KSR2 HGNC ENSG00000171435 192 1 0.518135 69 42 37.8378 CIT 0 genome.wustl.edu 37 12 120172994 120172994 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 120172994 120172994 G A SNP CIT ENST00000261833 human ensembl 74_37 -1 known nonsense c.3001 p.R1001* 0.994 pirsf_Citron_Rho-interacting_kinase pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom - no_errors CIT HGNC ENSG00000122966 117 0 0 68 41 37.6147 GCN1L1 0 genome.wustl.edu 37 12 120621397 120621397 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 120621397 120621397 C T SNP GCN1L1 ENST00000300648 human ensembl 74_37 -1 known missense c.401 p.R134Q 1.000 NULL pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2 - no_errors GCN1L1 HGNC ENSG00000089154 121 0 0 58 23 28.3951 CLIP1 0 genome.wustl.edu 37 12 122825691 122825691 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 122825691 122825691 G A SNP CLIP1 ENST00000540338 human ensembl 74_37 -1 known missense c.2060 p.A687V 0.835 NULL pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain - no_errors CLIP1 HGNC ENSG00000130779 157 0 0 79 33 29.4643 HIP1R 0 genome.wustl.edu 37 12 123343608 123343608 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 123343608 123343608 G A SNP HIP1R ENST00000253083 human ensembl 74_37 +1 known missense c.2159 p.R720H 1.000 NULL pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom - no_errors HIP1R HGNC ENSG00000130787 14 0 0 9 6 40 LRP6 0 genome.wustl.edu 37 12 12339973 12339973 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 12339973 12339973 C T SNP LRP6 ENST00000261349 human ensembl 74_37 -1 known missense c.728 p.S243N 0.984 pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt - no_errors LRP6 HGNC ENSG00000070018 88 0 0 78 25 24.2718 PITPNM2 0 genome.wustl.edu 37 12 123485614 123485614 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 123485614 123485614 C T SNP PITPNM2 ENST00000320201 human ensembl 74_37 -1 known silent c.1140 p.P380 0.023 NULL pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer - no_errors PITPNM2 HGNC ENSG00000090975 66 0 0 30 11 26.8293 ATP6V0A2 0 genome.wustl.edu 37 12 124229435 124229435 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 124229435 124229435 C A SNP ATP6V0A2 ENST00000330342 human ensembl 74_37 +1 known missense c.1521 p.S507R 0.000 pfam_V-ATPase_116kDa_su pfam_V-ATPase_116kDa_su - no_errors ATP6V0A2 HGNC ENSG00000185344 76 0 0 39 7 15.2174 ATP6V0A2 0 genome.wustl.edu 37 12 124235765 124235765 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 124235765 124235765 G A SNP ATP6V0A2 ENST00000330342 human ensembl 74_37 +1 known missense c.2044 p.G682R 0.593 pfam_V-ATPase_116kDa_su pfam_V-ATPase_116kDa_su - no_errors ATP6V0A2 HGNC ENSG00000185344 108 0 0 79 26 24.7619 DNAH10 0 genome.wustl.edu 37 12 124411254 124411254 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 124411254 124411254 T C SNP DNAH10 ENST00000409039 human ensembl 74_37 +1 known missense c.11638 p.F3880L 1.000 pfam_Dynein_heavy_dom pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase - no_errors DNAH10 HGNC ENSG00000197653 47 0 0 34 9 20.9302 NCOR2 0 genome.wustl.edu 37 12 124887093 124887093 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 124887093 124887093 C T SNP NCOR2 ENST00000356219 human ensembl 74_37 -1 known silent c.1497 p.Q499 0.999 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors NCOR2 HGNC ENSG00000196498 12 0 0 2 6 75 SCARB1 0 genome.wustl.edu 37 12 125298818 125298818 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 125298818 125298818 A G SNP SCARB1 ENST00000415380 human ensembl 74_37 -1 known missense c.560 p.L187P 0.230 pfam_CD36 pfam_CD36,prints_CD36,prints_CD36_antigen - no_errors SCARB1 HGNC ENSG00000073060 101 0 0 67 6 8.21918 FZD10 0 genome.wustl.edu 37 12 130648820 130648820 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 130648820 130648820 G A SNP FZD10 ENST00000229030 human ensembl 74_37 +1 known missense c.1333 p.G445R 1.000 pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled - no_errors FZD10 HGNC ENSG00000111432 67 0 0 29 10 25.641 GPR133 0 genome.wustl.edu 37 12 131488738 131488738 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 131488738 131488738 C T SNP GPR133 ENST00000261654 human ensembl 74_37 +1 known silent c.1152 p.S384 0.000 NULL pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like - no_errors GPR133 HGNC ENSG00000111452 45 0 0 24 7 22.5806 EP400 0 genome.wustl.edu 37 12 132539679 132539679 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 132539679 132539679 G A SNP EP400 ENST00000333577 human ensembl 74_37 +1 known missense c.7918 p.A2640T 0.994 NULL pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors EP400 HGNC ENSG00000183495 18 0 0 3 3 50 EP400 0 genome.wustl.edu 37 12 132547087 132547087 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 132547087 132547087 G A SNP EP400 ENST00000333577 human ensembl 74_37 +1 known silent c.8283 p.Q2761 1.000 NULL pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors EP400 HGNC ENSG00000183495 54 0 0 22 3 12 GRIN2B 0 genome.wustl.edu 37 12 13716215 13716215 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 13716215 13716215 C T SNP GRIN2B ENST00000609686 human ensembl 74_37 -1 known silent c.3957 p.P1319 0.415 pfam_NMDAR2_C pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIN2B HGNC ENSG00000273079 92 0 0 58 5 7.93651 GRIN2B 0 genome.wustl.edu 37 12 13716527 13716527 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 13716527 13716527 G A SNP GRIN2B ENST00000609686 human ensembl 74_37 -1 known silent c.3645 p.C1215 1.000 pfam_NMDAR2_C pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIN2B HGNC ENSG00000273079 108 0 0 61 32 34.4086 PLBD1 0 genome.wustl.edu 37 12 14664194 14664194 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 14664194 14664194 C A SNP PLBD1 ENST00000240617 human ensembl 74_37 -1 known nonsense c.1186 p.G396* 1.000 pfam_PLipase_B-like pfam_PLipase_B-like - no_errors PLBD1 HGNC ENSG00000121316 81 0 0 61 19 23.75 PIK3C2G 0 genome.wustl.edu 37 12 18435062 18435062 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 18435062 18435062 A G SNP PIK3C2G ENST00000538779 human ensembl 74_37 +1 known missense c.47 p.E16G 0.116 NULL pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3C2G HGNC ENSG00000139144 15 0 0 3 6 66.6667 PDE3A 0 genome.wustl.edu 37 12 20766472 20766472 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 20766472 20766472 C T SNP PDE3A ENST00000359062 human ensembl 74_37 +1 known silent c.1107 p.N369 0.651 NULL pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom - no_errors PDE3A HGNC ENSG00000172572 111 0 0 51 16 23.8806 IQSEC3 0 genome.wustl.edu 37 12 247675 247675 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 247675 247675 G T SNP IQSEC3 ENST00000326261 human ensembl 74_37 +1 known silent c.1146 p.V382 0.997 NULL pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom - no_errors IQSEC3 HGNC ENSG00000120645 13 0 0 5 7 58.3333 IQSEC3 0 genome.wustl.edu 37 12 248329 248329 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 248329 248329 C T SNP IQSEC3 ENST00000326261 human ensembl 74_37 +1 known silent c.1800 p.S600 1.000 NULL pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom - no_errors IQSEC3 HGNC ENSG00000120645 20 0 0 4 3 42.8571 CACNA1C 0 genome.wustl.edu 37 12 2800302 2800302 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 2800302 2800302 C T SNP CACNA1C ENST00000399634 human ensembl 74_37 +1 known silent c.6567 p.R2189 0.000 NULL pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su - no_errors CACNA1C HGNC ENSG00000151067 40 0 0 22 9 29.0323 NRIP2 0 genome.wustl.edu 37 12 2939904 2939904 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 2939904 2939904 T C SNP NRIP2 ENST00000337508 human ensembl 74_37 -1 known silent c.465 p.T155 0.000 superfamily_Peptidase_aspartic_dom pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom - no_errors NRIP2 HGNC ENSG00000053702 60 0 0 31 15 32.6087 OVCH1 0 genome.wustl.edu 37 12 29592284 29592284 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 29592284 29592284 T C SNP OVCH1 ENST00000318184 human ensembl 74_37 -1 known missense c.3241 p.M1081V 0.002 NULL pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors OVCH1 HGNC ENSG00000187950 10 0 0 5 4 44.4444 DDX11 0 genome.wustl.edu 37 12 31250882 31250882 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 31250882 31250882 T C SNP DDX11 ENST00000407793 human ensembl 74_37 +1 known missense c.1826 p.V609A 1.000 tigrfam_DNA_helicase_DNA-repair_Rad3 pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3 - no_errors DDX11 HGNC ENSG00000013573 133 0 0 64 28 30.4348 SLC6A13 0 genome.wustl.edu 37 12 368996 368996 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 368996 368996 G T SNP SLC6A13 ENST00000436453 human ensembl 74_37 -1 putative missense c.223 p.P75T 0.021 NULL pfam_Na/ntran_symport,pfscan_Na/ntran_symport - no_errors SLC6A13 HGNC ENSG00000010379 79 0 0 65 6 8.4507 CPNE8 0 genome.wustl.edu 37 12 39087578 39087578 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 39087578 39087578 T C SNP CPNE8 ENST00000331366 human ensembl 74_37 -1 known missense c.1024 p.M342V 0.992 pfam_Copine,smart_VWF_A,pfscan_VWF_A pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A - no_errors CPNE8 HGNC ENSG00000139117 78 0 0 30 22 42.3077 KIF21A 0 genome.wustl.edu 37 12 39695397 39695397 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 39695397 39695397 C A SNP KIF21A ENST00000395670 human ensembl 74_37 -1 known missense c.4819 p.G1607C 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom - no_errors KIF21A HGNC ENSG00000139116 269 0 0 210 26 11.0169 PUS7L 0 genome.wustl.edu 37 12 44130313 44130313 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 44130313 44130313 G A SNP PUS7L ENST00000344862 human ensembl 74_37 -1 known silent c.1596 p.H532 0.994 pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD - no_errors PUS7L HGNC ENSG00000129317 89 0 0 55 25 31.25 SCAF11 0 genome.wustl.edu 37 12 46327972 46327972 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 46327972 46327972 A G SNP SCAF11 ENST00000369367 human ensembl 74_37 -1 known missense c.619 p.Y207H 0.123 NULL smart_Znf_RING,pfscan_Znf_RING - no_errors SCAF11 HGNC ENSG00000139218 24 0 0 12 5 29.4118 PCED1B 0 genome.wustl.edu 37 12 47629390 47629390 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 47629390 47629390 C T SNP PCED1B ENST00000432328 human ensembl 74_37 +1 known missense c.544 p.R182W 0.002 NULL NULL - no_errors PCED1B HGNC ENSG00000179715 42 0 0 23 7 23.3333 KCNA6 0 genome.wustl.edu 37 12 4919519 4919519 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 4919519 4919519 C T SNP KCNA6 ENST00000280684 human ensembl 74_37 +1 known silent c.312 p.G104 0.999 pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv - no_errors KCNA6 HGNC ENSG00000151079 141 0 0 59 30 33.7079 CCDC65 0 genome.wustl.edu 37 12 49298120 49298120 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 49298120 49298120 A G SNP CCDC65 ENST00000266984 human ensembl 74_37 +1 known missense c.1 p.M1V 0.821 NULL NULL - no_errors CCDC65 HGNC ENSG00000139537 200 0 0 91 20 18.018 NCKAP5L 0 genome.wustl.edu 37 12 50188791 50188791 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 50188791 50188791 C T SNP NCKAP5L ENST00000335999 human ensembl 74_37 -1 known missense c.2852 p.R951Q 1.000 NULL NULL - no_errors NCKAP5L HGNC ENSG00000167566 12 0 0 4 6 60 AQP2 0 genome.wustl.edu 37 12 50344854 50344854 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 50344854 50344854 G A SNP AQP2 ENST00000199280 human ensembl 74_37 +1 known missense c.241 p.V81I 0.747 pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP - no_errors AQP2 HGNC ENSG00000167580 35 0 0 21 13 38.2353 CSRNP2 0 genome.wustl.edu 37 12 51457853 51457853 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 51457853 51457853 C T SNP CSRNP2 ENST00000228515 human ensembl 74_37 -1 known silent c.1308 p.T436 0.004 NULL prints_Cys/Ser-rich_nuc_prot - no_errors CSRNP2 HGNC ENSG00000110925 42 0 0 15 6 28.5714 DAZAP2 0 genome.wustl.edu 37 12 51634661 51634661 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 51634661 51634661 C T SNP DAZAP2 ENST00000549555 human ensembl 74_37 +1 known missense c.139 p.R47C 1.000 pfam_DAZ_assoc-2 pfam_DAZ_assoc-2 - no_errors DAZAP2 HGNC ENSG00000183283 111 0 0 51 26 33.7662 BIN2 0 genome.wustl.edu 37 12 51685740 51685740 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 51685740 51685740 C T SNP BIN2 ENST00000267012 human ensembl 74_37 -1 known missense c.1150 p.A384T 0.000 NULL pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin - no_errors BIN2 HGNC ENSG00000110934 71 0 0 34 7 17.0732 ANKRD33 0 genome.wustl.edu 37 12 52284398 52284398 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 52284398 52284398 G A SNP ANKRD33 ENST00000340970 human ensembl 74_37 +1 known missense c.293 p.R98Q 0.214 superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD33 HGNC ENSG00000167612 46 0 0 15 8 34.7826 C12orf44 0 genome.wustl.edu 37 12 52467515 52467515 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 52467515 52467515 G A SNP C12orf44 ENST00000336854 human ensembl 74_37 +1 known silent c.81 p.T27 0.868 pfam_ATG101 pfam_ATG101 - no_errors C12orf44 HGNC ENSG00000123395 77 0 0 31 3 8.82353 KRT3 0 genome.wustl.edu 37 12 53189822 53189822 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 53189822 53189822 C T SNP KRT3 ENST00000309505 human ensembl 74_37 -1 known missense c.5 p.S2N 0.464 NULL pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I - no_errors KRT3 HGNC ENSG00000186442 38 0 0 14 3 17.6471 EIF4B 0 genome.wustl.edu 37 12 53412624 53412624 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 53412624 53412624 C T SNP EIF4B ENST00000262056 human ensembl 74_37 +1 known missense c.194 p.A65V 1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors EIF4B HGNC ENSG00000063046 138 0 0 85 21 19.8113 SP1 0 genome.wustl.edu 37 12 53776653 53776653 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 53776653 53776653 G A SNP SP1 ENST00000327443 human ensembl 74_37 +1 known missense c.922 p.A308T 0.996 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SP1 HGNC ENSG00000185591 120 0 0 96 10 9.43396 MAP3K12 0 genome.wustl.edu 37 12 53880257 53880257 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 53880257 53880257 G A SNP MAP3K12 ENST00000267079 human ensembl 74_37 -1 known nonsense c.496 p.R166* 1.000 pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors MAP3K12 HGNC ENSG00000139625 78 0 0 43 17 28.3333 PDE1B 0 genome.wustl.edu 37 12 54966477 54966477 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 54966477 54966477 C T SNP PDE1B ENST00000243052 human ensembl 74_37 +1 known silent c.687 p.A229 0.235 pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE1B HGNC ENSG00000123360 377 0 0 225 88 28.115 TESPA1 0 genome.wustl.edu 37 12 55360195 55360195 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 55360195 55360195 G A SNP TESPA1 ENST00000316577 human ensembl 74_37 -1 known silent c.324 p.A108 0.235 NULL NULL - no_errors TESPA1 HGNC ENSG00000135426 106 0 0 56 21 27.2727 OR6C1 0 genome.wustl.edu 37 12 55714989 55714989 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 55714989 55714989 G A SNP OR6C1 ENST00000379668 human ensembl 74_37 +1 known silent c.606 p.A202 0.293 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR6C1 HGNC ENSG00000205330 45 0 0 22 7 24.1379 ITGA7 0 genome.wustl.edu 37 12 56091513 56091513 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 56091513 56091513 C T SNP ITGA7 ENST00000555728 human ensembl 74_37 -1 known missense c.1507 p.V503M 1.000 smart_Int_alpha_beta-p,prints_Integrin_alpha pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha - no_errors ITGA7 HGNC ENSG00000135424 71 0 0 33 13 28.2609 DNAJC14 0 genome.wustl.edu 37 12 56215796 56215796 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 56215796 56215796 G A SNP DNAJC14 ENST00000317269 human ensembl 74_37 -1 known missense c.2074 p.R692W 0.999 NULL pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain - no_errors DNAJC14 HGNC ENSG00000135392 149 0 0 76 42 35.5932 MYL6 0 genome.wustl.edu 37 12 56552245 56552245 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 56552245 56552245 G T SNP MYL6 ENST00000536128 human ensembl 74_37 +1 putative silent c.60 p.T20 0.428 NULL smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors MYL6 HGNC ENSG00000092841 39 0 0 20 6 23.0769 APOF 0 genome.wustl.edu 37 12 56755798 56755798 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 56755798 56755798 G T SNP APOF ENST00000398189 human ensembl 74_37 -1 known silent c.192 p.S64 0.184 NULL NULL - no_errors APOF HGNC ENSG00000175336 151 0 0 99 7 6.60377 LRP1 0 genome.wustl.edu 37 12 57567081 57567081 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 57567081 57567081 G T SNP LRP1 ENST00000243077 human ensembl 74_37 +1 known missense c.3294 p.E1098D 0.999 superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP1 HGNC ENSG00000123384 65 0 0 51 4 7.27273 KIF5A 0 genome.wustl.edu 37 12 57962772 57962772 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 57962772 57962772 C T SNP KIF5A ENST00000455537 human ensembl 74_37 +1 known silent c.741 p.A247 0.263 pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF5A HGNC ENSG00000155980 65 0 0 52 12 18.75 ARHGEF25 0 genome.wustl.edu 37 12 58008142 58008142 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 58008142 58008142 C T SNP ARHGEF25 ENST00000333972 human ensembl 74_37 +1 known silent c.802 p.L268 0.774 pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain - no_errors ARHGEF25 HGNC ENSG00000240771 119 0 0 61 20 24.6914 AVIL 0 genome.wustl.edu 37 12 58201166 58201166 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 58201166 58201166 G A SNP AVIL ENST00000257861 human ensembl 74_37 -1 known missense c.1439 p.T480M 1.000 pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin - no_errors AVIL HGNC ENSG00000135407 127 1 0.78125 75 36 32.4324 SLC16A7 0 genome.wustl.edu 37 12 60168466 60168466 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 60168466 60168466 C T SNP SLC16A7 ENST00000261187 human ensembl 74_37 +1 known silent c.390 p.P130 0.007 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt - no_errors SLC16A7 HGNC ENSG00000118596 47 0 0 22 9 29.0323 VWF 0 genome.wustl.edu 37 12 6128559 6128559 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 6128559 6128559 C T SNP VWF ENST00000261405 human ensembl 74_37 -1 known missense c.4025 p.R1342H 0.949 pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C - no_errors VWF HGNC ENSG00000110799 74 0 0 27 21 43.75 LDHAL6CP 0 genome.wustl.edu 37 12 63397515 63397515 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 63397515 63397515 C T SNP LDHAL6CP ENST00000550738 human ensembl 74_37 +1 known rna NULL NULL 0.111 - - - no_errors LDHAL6CP HGNC ENSG00000250517 31 0 0 24 7 22.5806 LEMD3 0 genome.wustl.edu 37 12 65564319 65564319 + Nonsense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 65564319 65564319 G T SNP LEMD3 ENST00000308330 human ensembl 74_37 +1 known nonsense c.943 p.G315* 0.818 NULL pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom - no_errors LEMD3 HGNC ENSG00000174106 31 0 0 20 3 13.0435 IRAK3 0 genome.wustl.edu 37 12 66638373 66638373 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 66638373 66638373 G A SNP IRAK3 ENST00000261233 human ensembl 74_37 +1 known missense c.995 p.S332N 0.591 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom - no_errors IRAK3 HGNC ENSG00000090376 133 0 0 66 27 29.0323 HELB 0 genome.wustl.edu 37 12 66704320 66704320 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 66704320 66704320 G T SNP HELB ENST00000247815 human ensembl 74_37 +1 known missense c.1612 p.A538S 1.000 superfamily_P-loop_NTPase superfamily_P-loop_NTPase - no_errors HELB HGNC ENSG00000127311 166 0 0 85 37 30.3279 DYRK2 0 genome.wustl.edu 37 12 68051937 68051937 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 68051937 68051937 C T SNP DYRK2 ENST00000344096 human ensembl 74_37 +1 known missense c.1250 p.T417M 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors DYRK2 HGNC ENSG00000127334 28 0 0 17 5 22.7273 CDCA3 0 genome.wustl.edu 37 12 6958314 6958314 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 6958314 6958314 C A SNP CDCA3 ENST00000538862 human ensembl 74_37 -1 known nonsense c.700 p.G234* 0.999 NULL NULL - no_errors CDCA3 HGNC ENSG00000111665 46 0 0 21 4 16 TPH2 0 genome.wustl.edu 37 12 72372756 72372756 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 72372756 72372756 C T SNP TPH2 ENST00000333850 human ensembl 74_37 +1 known missense c.830 p.P277L 1.000 pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase - no_errors TPH2 HGNC ENSG00000139287 130 0 0 59 22 27.1605 CLSTN3 0 genome.wustl.edu 37 12 7287981 7287981 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 7287981 7287981 C T SNP CLSTN3 ENST00000266546 human ensembl 74_37 +1 known missense c.442 p.R148W 1.000 superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CLSTN3 HGNC ENSG00000139182 93 0 0 67 18 21.1765 ACSS3 0 genome.wustl.edu 37 12 81503375 81503375 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 81503375 81503375 C T SNP ACSS3 ENST00000548058 human ensembl 74_37 +1 known silent c.348 p.A116 1.000 NULL pfam_AMP-dep_Synth/Lig - no_errors ACSS3 HGNC ENSG00000111058 60 0 0 21 10 32.2581 METTL25 0 genome.wustl.edu 37 12 82752576 82752576 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 82752576 82752576 C T SNP METTL25 ENST00000248306 human ensembl 74_37 +1 known missense c.232 p.P78S 0.991 NULL NULL - no_errors METTL25 HGNC ENSG00000127720 40 0 0 13 9 40.9091 ENSG00000221104 0 genome.wustl.edu 37 12 8519352 8519352 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 8519352 8519352 G A SNP ENSG00000221104 ENST00000408177 human ensembl 74_37 +1 novel rna NULL NULL 0.344 - - - no_errors AC092865.1 Clone_based_ensembl_gene ENSG00000221104 53 0 0 17 13 43.3333 LRRIQ1 0 genome.wustl.edu 37 12 85450750 85450750 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 85450750 85450750 T A SNP LRRIQ1 ENST00000393217 human ensembl 74_37 +1 known missense c.2179 p.C727S 0.000 NULL pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS - no_errors LRRIQ1 HGNC ENSG00000133640 324 0 0 196 49 20 ALX1 0 genome.wustl.edu 37 12 85695137 85695137 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 85695137 85695137 G A SNP ALX1 ENST00000316824 human ensembl 74_37 +1 known missense c.865 p.A289T 1.000 NULL pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom - no_errors ALX1 HGNC ENSG00000180318 86 0 0 54 18 25 A2M 0 genome.wustl.edu 37 12 9251308 9251308 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 9251308 9251308 G A SNP A2M ENST00000318602 human ensembl 74_37 -1 known silent c.1746 p.H582 0.000 pfam_A2M_N_2 pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin - no_errors A2M HGNC ENSG00000175899 34 0 0 18 5 21.7391 LTA4H 0 genome.wustl.edu 37 12 96412600 96412600 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 96412600 96412600 A T SNP LTA4H ENST00000228740 human ensembl 74_37 -1 known missense c.793 p.S265T 0.999 pfam_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase - no_errors LTA4H HGNC ENSG00000111144 41 0 0 39 7 15.2174 NALCN 0 genome.wustl.edu 37 13 102029117 102029117 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 102029117 102029117 C T SNP NALCN ENST00000251127 human ensembl 74_37 -1 known missense c.578 p.G193E 1.000 pfam_Ion_trans_dom pfam_Ion_trans_dom - no_errors NALCN HGNC ENSG00000102452 143 0 0 66 29 30.5263 NALCN 0 genome.wustl.edu 37 13 102047697 102047697 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 102047697 102047697 C T SNP NALCN ENST00000251127 human ensembl 74_37 -1 known missense c.128 p.R43H 1.000 NULL pfam_Ion_trans_dom - no_errors NALCN HGNC ENSG00000102452 72 0 0 41 13 24.0741 ERCC5 0 genome.wustl.edu 37 13 103528225 103528225 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 103528225 103528225 G A SNP ERCC5 ENST00000355739 human ensembl 74_37 +1 known missense c.3533 p.R1178H 0.000 NULL pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes - no_errors ERCC5 HGNC ENSG00000134899 41 0 0 14 5 26.3158 COL4A1 0 genome.wustl.edu 37 13 110839513 110839513 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 110839513 110839513 G A SNP COL4A1 ENST00000375820 human ensembl 74_37 -1 known missense c.1700 p.P567L 0.982 pfam_Collagen pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC - no_errors COL4A1 HGNC ENSG00000187498 202 0 0 95 34 26.3566 CARKD 0 genome.wustl.edu 37 13 111289536 111289536 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 111289536 111289536 C T SNP CARKD ENST00000309957 human ensembl 74_37 +1 known missense c.833 p.S278L 1.000 pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel - no_errors CARKD HGNC ENSG00000213995 47 0 0 10 7 41.1765 F10 0 genome.wustl.edu 37 13 113793763 113793763 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 113793763 113793763 G A SNP F10 ENST00000375559 human ensembl 74_37 +1 known missense c.349 p.E117K 0.074 pirsf_Pept_S1A_FX,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1 - no_errors F10 HGNC ENSG00000126218 62 0 0 21 10 32.2581 LAMP1 0 genome.wustl.edu 37 13 113973833 113973833 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 113973833 113973833 G A SNP LAMP1 ENST00000332556 human ensembl 74_37 +1 known silent c.612 p.A204 0.000 pfam_Lysosome-assoc_membr_glycop pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop - no_errors LAMP1 HGNC ENSG00000185896 85 0 0 33 9 21.4286 ZMYM5 0 genome.wustl.edu 37 13 20426142 20426142 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 20426142 20426142 A T SNP ZMYM5 ENST00000337963 human ensembl 74_37 -1 known missense c.179 p.V60D 1.000 NULL pfam_Znf_MYM,smart_TRASH_dom - no_errors ZMYM5 HGNC ENSG00000132950 57 0 0 18 4 18.1818 ZMYM2 0 genome.wustl.edu 37 13 20608488 20608488 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 20608488 20608488 A C SNP ZMYM2 ENST00000382869 human ensembl 74_37 +1 known missense c.2063 p.K688T 1.000 smart_TRASH_dom pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom - no_errors ZMYM2 HGNC ENSG00000121741 96 0 0 52 16 23.5294 LATS2 0 genome.wustl.edu 37 13 21557370 21557370 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 21557370 21557370 G A SNP LATS2 ENST00000382592 human ensembl 74_37 -1 known silent c.2475 p.Y825 1.000 pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom - no_errors LATS2 HGNC ENSG00000150457 71 0 0 42 15 26.3158 LATS2 0 genome.wustl.edu 37 13 21557772 21557772 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 21557772 21557772 G A SNP LATS2 ENST00000382592 human ensembl 74_37 -1 known silent c.2073 p.H691 0.079 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom - no_errors LATS2 HGNC ENSG00000150457 108 0 0 51 16 23.8806 FGF9 0 genome.wustl.edu 37 13 22275388 22275388 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 22275388 22275388 G A SNP FGF9 ENST00000382353 human ensembl 74_37 +1 known silent c.441 p.T147 0.686 pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam - no_errors FGF9 HGNC ENSG00000102678 54 0 0 20 13 39.3939 RNF17 0 genome.wustl.edu 37 13 25424504 25424504 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 25424504 25424504 A G SNP RNF17 ENST00000255324 human ensembl 74_37 +1 known missense c.3127 p.T1043A 1.000 NULL pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING - no_errors RNF17 HGNC ENSG00000132972 38 0 0 31 3 8.82353 GPR12 0 genome.wustl.edu 37 13 27333685 27333685 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 27333685 27333685 C T SNP GPR12 ENST00000381436 human ensembl 74_37 -1 known missense c.280 p.G94S 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn - no_errors GPR12 HGNC ENSG00000132975 134 0 0 55 19 25.6757 GSX1 0 genome.wustl.edu 37 13 28367781 28367781 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 28367781 28367781 G A SNP GSX1 ENST00000302945 human ensembl 74_37 +1 known missense c.491 p.R164H 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa - no_errors GSX1 HGNC ENSG00000169840 104 0 0 41 22 34.9206 B3GALTL 0 genome.wustl.edu 37 13 31897940 31897940 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 31897940 31897940 T C SNP B3GALTL ENST00000343307 human ensembl 74_37 +1 known missense c.1237 p.C413R 0.999 pfam_Fringe-like pfam_Fringe-like - no_errors B3GALTL HGNC ENSG00000187676 296 0 0 164 79 32.5103 DCLK1 0 genome.wustl.edu 37 13 36699914 36699914 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 36699914 36699914 C A SNP DCLK1 ENST00000360631 human ensembl 74_37 -1 known missense c.361 p.D121Y 1.000 pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom - no_errors DCLK1 HGNC ENSG00000133083 56 0 0 39 6 13.3333 KBTBD7 0 genome.wustl.edu 37 13 41767959 41767959 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 41767959 41767959 G A SNP KBTBD7 ENST00000379483 human ensembl 74_37 -1 known silent c.435 p.Y145 1.000 pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like - no_errors KBTBD7 HGNC ENSG00000120696 76 0 0 38 10 20.8333 DGKH 0 genome.wustl.edu 37 13 42784857 42784857 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 42784857 42784857 G A SNP DGKH ENST00000337343 human ensembl 74_37 +1 known silent c.2970 p.S990 0.001 NULL pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd - no_errors DGKH HGNC ENSG00000102780 80 0 0 40 16 28.5714 AKAP11 0 genome.wustl.edu 37 13 42874000 42874000 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 42874000 42874000 T C SNP AKAP11 ENST00000025301 human ensembl 74_37 +1 known missense c.1118 p.L373P 0.000 NULL NULL - no_errors AKAP11 HGNC ENSG00000023516 54 0 0 28 11 28.2051 SIAH3 0 genome.wustl.edu 37 13 46425658 46425658 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 46425658 46425658 C T SNP SIAH3 ENST00000400405 human ensembl 74_37 -1 known missense c.107 p.C36Y 1.000 NULL pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like - no_errors SIAH3 HGNC ENSG00000215475 126 0 0 82 7 7.86517 MLNR 0 genome.wustl.edu 37 13 49795007 49795007 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 49795007 49795007 C T SNP MLNR ENST00000218721 human ensembl 74_37 +1 known silent c.534 p.G178 0.999 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GHS-R - no_errors MLNR HGNC ENSG00000102539 13 0 0 5 5 50 PCDH17 0 genome.wustl.edu 37 13 58208617 58208617 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 58208617 58208617 G A SNP PCDH17 ENST00000377918 human ensembl 74_37 +1 known missense c.1937 p.R646H 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH17 HGNC ENSG00000118946 247 0 0 127 45 26.1628 KLF12 0 genome.wustl.edu 37 13 74420073 74420073 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 74420073 74420073 G A SNP KLF12 ENST00000377666 human ensembl 74_37 -1 known silent c.561 p.P187 0.001 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors KLF12 HGNC ENSG00000118922 87 0 0 80 5 5.88235 MYCBP2 0 genome.wustl.edu 37 13 77720321 77720321 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 77720321 77720321 C T SNP MYCBP2 ENST00000407578 human ensembl 74_37 -1 known missense c.7163 p.R2388H 1.000 pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,pfscan_Filamin/ABP280_repeat-like pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens - no_errors MYCBP2 HGNC ENSG00000005810 79 0 0 46 9 16.3636 SLITRK5 0 genome.wustl.edu 37 13 88327910 88327910 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 88327910 88327910 C T SNP SLITRK5 ENST00000325089 human ensembl 74_37 +1 known silent c.267 p.S89 0.992 NULL pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C - no_errors SLITRK5 HGNC ENSG00000165300 219 0 0 112 30 21.1268 GPC5 0 genome.wustl.edu 37 13 92346050 92346050 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 92346050 92346050 T C SNP GPC5 ENST00000377067 human ensembl 74_37 +1 known missense c.935 p.I312T 0.977 pfam_Glypican pfam_Glypican - no_errors GPC5 HGNC ENSG00000179399 122 0 0 81 25 23.5849 GPC6 0 genome.wustl.edu 37 13 93879765 93879765 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 93879765 93879765 T C SNP GPC6 ENST00000377047 human ensembl 74_37 +1 known missense c.56 p.L19P 1.000 pfam_Glypican pfam_Glypican - no_errors GPC6 HGNC ENSG00000183098 108 0 0 48 16 25 RAP2A 0 genome.wustl.edu 37 13 98086825 98086825 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 98086825 98086825 C A SNP RAP2A ENST00000245304 human ensembl 74_37 +1 known missense c.101 p.P34H 1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors RAP2A HGNC ENSG00000125249 210 0 0 126 7 5.26316 CYP46A1 0 genome.wustl.edu 37 14 100182183 100182183 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 100182183 100182183 C T SNP CYP46A1 ENST00000261835 human ensembl 74_37 +1 known missense c.730 p.R244W 0.677 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV - no_errors CYP46A1 HGNC ENSG00000036530 73 0 0 39 16 29.0909 PPP2R5C 0 genome.wustl.edu 37 14 102368058 102368058 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 102368058 102368058 G T SNP PPP2R5C ENST00000422945 human ensembl 74_37 +1 known silent c.948 p.V316 1.000 pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56 pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56 - no_errors PPP2R5C HGNC ENSG00000078304 66 0 0 37 10 21.2766 WDR20 0 genome.wustl.edu 37 14 102675164 102675164 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 102675164 102675164 C T SNP WDR20 ENST00000454394 human ensembl 74_37 +1 known silent c.750 p.G250 0.998 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR20 HGNC ENSG00000140153 74 0 0 38 19 33.3333 TECPR2 0 genome.wustl.edu 37 14 102915976 102915976 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 102915976 102915976 C T SNP TECPR2 ENST00000359520 human ensembl 74_37 +1 known missense c.3086 p.T1029M 1.000 superfamily_RCC1/BLIP-II pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR - no_errors TECPR2 HGNC ENSG00000196663 205 0 0 93 53 36.3014 CDC42BPB 0 genome.wustl.edu 37 14 103404710 103404710 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 103404710 103404710 G A SNP CDC42BPB ENST00000361246 human ensembl 74_37 -1 known silent c.4866 p.P1622 0.000 NULL pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd - no_errors CDC42BPB HGNC ENSG00000198752 129 0 0 79 34 30.0885 CDC42BPB 0 genome.wustl.edu 37 14 103410756 103410756 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 103410756 103410756 T C SNP CDC42BPB ENST00000361246 human ensembl 74_37 -1 known missense c.3880 p.I1294V 0.012 pfam_Citron,smart_Citron pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd - no_errors CDC42BPB HGNC ENSG00000198752 40 0 0 30 6 16.6667 EXOC3L4 0 genome.wustl.edu 37 14 103566851 103566851 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 103566851 103566851 C T SNP EXOC3L4 ENST00000380069 human ensembl 74_37 +1 known missense c.295 p.H99Y 0.000 NULL pfam_Sec6 - no_errors EXOC3L4 HGNC ENSG00000205436 31 0 0 11 7 38.8889 ZFYVE21 0 genome.wustl.edu 37 14 104194188 104194188 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 104194188 104194188 T C SNP ZFYVE21 ENST00000216602 human ensembl 74_37 +1 known missense c.295 p.C99R 0.996 pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel - no_errors ZFYVE21 HGNC ENSG00000100711 63 0 0 33 3 8.33333 AHNAK2 0 genome.wustl.edu 37 14 105413904 105413904 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 105413904 105413904 C T SNP AHNAK2 ENST00000333244 human ensembl 74_37 -1 known silent c.7884 p.A2628 0.006 NULL superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors AHNAK2 HGNC ENSG00000185567 374 0 0 194 85 30.4659 AHNAK2 0 genome.wustl.edu 37 14 105415580 105415580 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 105415580 105415580 G A SNP AHNAK2 ENST00000333244 human ensembl 74_37 -1 known missense c.6208 p.H2070Y 0.328 NULL superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors AHNAK2 HGNC ENSG00000185567 221 0 0 134 9 6.29371 AHNAK2 0 genome.wustl.edu 37 14 105416463 105416463 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 105416463 105416463 C T SNP AHNAK2 ENST00000333244 human ensembl 74_37 -1 known silent c.5325 p.A1775 0.000 NULL superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors AHNAK2 HGNC ENSG00000185567 206 1 0.483092 79 38 32.4786 OR11G2 0 genome.wustl.edu 37 14 20665777 20665777 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 20665777 20665777 G A SNP OR11G2 ENST00000357366 human ensembl 74_37 +1 known missense c.283 p.A95T 0.381 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR11G2 HGNC ENSG00000196832 107 0 0 63 30 32.2581 TEP1 0 genome.wustl.edu 37 14 20864060 20864060 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 20864060 20864060 G T SNP TEP1 ENST00000262715 human ensembl 74_37 -1 known missense c.1708 p.H570N 0.999 pfam_TROVE,pfscan_TROVE pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TEP1 HGNC ENSG00000129566 101 0 0 60 23 27.7108 OSGEP 0 genome.wustl.edu 37 14 20916116 20916116 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 20916116 20916116 C T SNP OSGEP ENST00000206542 human ensembl 74_37 -1 known missense c.740 p.R247Q 1.000 pfam_Gcp-like_dom,tigrfam_KAE1/YgjD pfam_Gcp-like_dom,prints_KAE1/YgjD,tigrfam_KAE1/YgjD - no_errors OSGEP HGNC ENSG00000092094 99 0 0 59 31 34.4444 PSMB11 0 genome.wustl.edu 37 14 23511563 23511563 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 23511563 23511563 C T SNP PSMB11 ENST00000408907 human ensembl 74_37 +1 known silent c.129 p.G43 0.998 NULL pfam_Proteasome_sua/b,prints_Pept_T1A_subB - no_errors PSMB11 HGNC ENSG00000222028 129 0 0 91 5 5.20833 ACIN1 0 genome.wustl.edu 37 14 23564354 23564354 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 23564354 23564354 C A SNP ACIN1 ENST00000262710 human ensembl 74_37 -1 known missense c.142 p.A48S 1.000 NULL pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom - no_errors ACIN1 HGNC ENSG00000100813 57 0 0 30 11 26.8293 MYH6 0 genome.wustl.edu 37 14 23854244 23854244 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 23854244 23854244 T C SNP MYH6 ENST00000356287 human ensembl 74_37 -1 known missense c.5170 p.S1724G 1.000 pfam_Myosin_tail pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH6 HGNC ENSG00000197616 87 0 0 43 19 30.6452 MYH6 0 genome.wustl.edu 37 14 23869968 23869968 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 23869968 23869968 G A SNP MYH6 ENST00000356287 human ensembl 74_37 -1 known missense c.1360 p.R454C 0.937 pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH6 HGNC ENSG00000197616 97 0 0 47 18 27.6923 MYH7 0 genome.wustl.edu 37 14 23889166 23889166 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 23889166 23889166 T G SNP MYH7 ENST00000355349 human ensembl 74_37 -1 known missense c.3614 p.E1205A 1.000 pfam_Myosin_tail pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH7 HGNC ENSG00000092054 33 0 0 12 6 33.3333 LRRC16B 0 genome.wustl.edu 37 14 24525593 24525593 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 24525593 24525593 G A SNP LRRC16B ENST00000342740 human ensembl 74_37 +1 known missense c.856 p.E286K 1.000 smart_Leu-rich_rpt_RNase_inh_sub-typ smart_Leu-rich_rpt_RNase_inh_sub-typ - no_errors LRRC16B HGNC ENSG00000186648 42 0 0 14 7 33.3333 SDR39U1 0 genome.wustl.edu 37 14 24909407 24909407 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 24909407 24909407 C T SNP SDR39U1 ENST00000399395 human ensembl 74_37 -1 known missense c.764 p.R255Q 0.252 pfam_DUF1731_C,tigrfam_Sugar_nucleotide_Epase_put pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put - no_errors SDR39U1 HGNC ENSG00000100445 29 0 0 12 6 33.3333 AKAP6 0 genome.wustl.edu 37 14 33292184 33292184 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 33292184 33292184 T C SNP AKAP6 ENST00000280979 human ensembl 74_37 +1 known missense c.5165 p.L1722P 1.000 NULL smart_Spectrin/alpha-actinin - no_errors AKAP6 HGNC ENSG00000151320 99 0 0 70 38 35.1852 TTC6 0 genome.wustl.edu 37 14 38296430 38296430 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 38296430 38296430 T C SNP TTC6 ENST00000478811 human ensembl 74_37 +1 known silent c.1350 p.N450 0.998 pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC6 HGNC ENSG00000139865 44 0 0 35 10 22.2222 RPL10L 0 genome.wustl.edu 37 14 47120800 47120800 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 47120800 47120800 G A SNP RPL10L ENST00000298283 human ensembl 74_37 -1 known missense c.140 p.P47L 1.000 pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e - no_errors RPL10L HGNC ENSG00000165496 95 0 0 51 27 34.6154 SOS2 0 genome.wustl.edu 37 14 50585161 50585161 + Silent SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 50585161 50585161 A T SNP SOS2 ENST00000216373 human ensembl 74_37 -1 known silent c.3900 p.P1300 1.000 NULL pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N - no_errors SOS2 HGNC ENSG00000100485 74 0 0 34 12 26.087 SAV1 0 genome.wustl.edu 37 14 51107479 51107479 + Silent SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 51107479 51107479 T G SNP SAV1 ENST00000324679 human ensembl 74_37 -1 known silent c.939 p.R313 1.000 NULL pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_SARAH_dom,pfscan_WW_dom - no_errors SAV1 HGNC ENSG00000151748 59 0 0 39 11 22 NIN 0 genome.wustl.edu 37 14 51259462 51259462 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 51259462 51259462 G A SNP NIN ENST00000245441 human ensembl 74_37 -1 known missense c.403 p.P135S 0.199 NULL superfamily_tRNA-bd_arm,pfscan_EF_hand_dom - no_errors NIN HGNC ENSG00000100503 101 0 0 79 5 5.95238 FRMD6 0 genome.wustl.edu 37 14 52186867 52186867 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 52186867 52186867 G A SNP FRMD6 ENST00000344768 human ensembl 74_37 +1 known silent c.1119 p.A373 0.001 NULL pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain - no_errors FRMD6 HGNC ENSG00000139926 80 0 0 29 13 30.9524 PTGDR 0 genome.wustl.edu 37 14 52735331 52735331 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 52735331 52735331 C T SNP PTGDR ENST00000306051 human ensembl 74_37 +1 known silent c.799 p.L267 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prostanoid_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt - no_errors PTGDR HGNC ENSG00000168229 285 0 0 135 54 28.5714 ACTR10 0 genome.wustl.edu 37 14 58678052 58678052 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 58678052 58678052 C T SNP ACTR10 ENST00000254286 human ensembl 74_37 +1 known silent c.385 p.L129 1.000 pfam_Actin-related,smart_Actin-related pfam_Actin-related,smart_Actin-related - no_errors ACTR10 HGNC ENSG00000131966 202 0 0 112 40 26.3158 SIX6 0 genome.wustl.edu 37 14 60976534 60976534 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 60976534 60976534 C T SNP SIX6 ENST00000327720 human ensembl 74_37 +1 known missense c.418 p.R140W 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors SIX6 HGNC ENSG00000184302 29 0 0 19 9 32.1429 HSPA2 0 genome.wustl.edu 37 14 65008404 65008404 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 65008404 65008404 G A SNP HSPA2 ENST00000247207 human ensembl 74_37 +1 known silent c.837 p.S279 1.000 pfam_Hsp_70_fam,pfam_MreB_Mrl pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam - no_errors HSPA2 HGNC ENSG00000126803 21 0 0 6 2 25 SLC8A3 0 genome.wustl.edu 37 14 70634521 70634521 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 70634521 70634521 C T SNP SLC8A3 ENST00000381269 human ensembl 74_37 -1 known missense c.619 p.A207T 1.000 pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex - no_errors SLC8A3 HGNC ENSG00000100678 46 0 0 29 6 17.1429 PCNX 0 genome.wustl.edu 37 14 71576248 71576248 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 71576248 71576248 G A SNP PCNX ENST00000304743 human ensembl 74_37 +1 known missense c.6824 p.R2275Q 1.000 NULL pfam_Pecanex - no_errors PCNX HGNC ENSG00000100731 80 0 0 33 9 21.4286 SIPA1L1 0 genome.wustl.edu 37 14 72190562 72190562 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 72190562 72190562 C T SNP SIPA1L1 ENST00000555818 human ensembl 74_37 +1 known silent c.4470 p.P1490 0.003 NULL pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom - no_errors SIPA1L1 HGNC ENSG00000197555 106 0 0 62 18 22.5 LTBP2 0 genome.wustl.edu 37 14 74973960 74973960 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 74973960 74973960 C T SNP LTBP2 ENST00000261978 human ensembl 74_37 -1 known missense c.3829 p.E1277K 1.000 pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom - no_errors LTBP2 HGNC ENSG00000119681 121 0 0 81 22 21.3592 LTBP2 0 genome.wustl.edu 37 14 75022288 75022288 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 75022288 75022288 G A SNP LTBP2 ENST00000261978 human ensembl 74_37 -1 known silent c.939 p.N313 0.991 NULL pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom - no_errors LTBP2 HGNC ENSG00000119681 102 1 0.970874 63 16 20.2532 PGF 0 genome.wustl.edu 37 14 75415222 75415222 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 75415222 75415222 C T SNP PGF ENST00000405431 human ensembl 74_37 -1 known missense c.380 p.R127H 0.001 pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom - no_errors PGF HGNC ENSG00000119630 57 0 0 26 7 21.2121 EIF2B2 0 genome.wustl.edu 37 14 75470355 75470355 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 75470355 75470355 T G SNP EIF2B2 ENST00000266126 human ensembl 74_37 +1 known missense c.386 p.L129R 1.000 pfam_IF-2B-related pfam_IF-2B-related - no_errors EIF2B2 HGNC ENSG00000119718 61 0 0 29 5 14.7059 AHSA1 0 genome.wustl.edu 37 14 77935581 77935581 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 77935581 77935581 C T SNP AHSA1 ENST00000216479 human ensembl 74_37 +1 known missense c.1006 p.R336C 1.000 NULL pfam_AHSA1_N,pfam_Activator_of_Hsp90_ATPase,superfamily_AHSA1_N - no_errors AHSA1 HGNC ENSG00000100591 153 0 0 98 41 29.4964 CEP128 0 genome.wustl.edu 37 14 81259426 81259426 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 81259426 81259426 T C SNP CEP128 ENST00000281129 human ensembl 74_37 -1 known missense c.1238 p.E413G 1.000 NULL NULL - no_errors CEP128 HGNC ENSG00000100629 62 0 0 34 20 37.037 SEL1L 0 genome.wustl.edu 37 14 81993096 81993096 + Silent SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 81993096 81993096 T G SNP SEL1L ENST00000336735 human ensembl 74_37 -1 known silent c.321 p.P107 0.061 NULL pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd - no_errors SEL1L HGNC ENSG00000071537 127 0 0 72 27 27.2727 ZC3H14 0 genome.wustl.edu 37 14 89039116 89039116 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 89039116 89039116 G A SNP ZC3H14 ENST00000251038 human ensembl 74_37 +1 known missense c.626 p.R209H 1.000 NULL smart_Znf_CCCH - no_errors ZC3H14 HGNC ENSG00000100722 187 0 0 133 8 5.67376 PSMC1 0 genome.wustl.edu 37 14 90738656 90738656 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 90738656 90738656 C T SNP PSMC1 ENST00000261303 human ensembl 74_37 +1 known missense c.1228 p.R410C 1.000 superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45 pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45 - no_errors PSMC1 HGNC ENSG00000100764 24 0 0 7 7 50 NRDE2 0 genome.wustl.edu 37 14 90744727 90744727 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 90744727 90744727 G A SNP NRDE2 ENST00000354366 human ensembl 74_37 -1 known missense c.3448 p.R1150W 0.988 NULL pfam_NRDE-2 - no_errors NRDE2 HGNC ENSG00000119720 51 0 0 23 14 37.8378 RIN3 0 genome.wustl.edu 37 14 93043773 93043773 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 93043773 93043773 C T SNP RIN3 ENST00000216487 human ensembl 74_37 +1 known silent c.318 p.N106 0.000 smart_SH2,pfscan_SH2 pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9 - no_errors RIN3 HGNC ENSG00000100599 146 0 0 49 16 24.6154 UNC79 0 genome.wustl.edu 37 14 94120340 94120340 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 94120340 94120340 G T SNP UNC79 ENST00000553484 human ensembl 74_37 +1 known missense c.6434 p.S2145I 1.000 superfamily_ARM-type_fold superfamily_P-loop_NTPase,superfamily_ARM-type_fold - no_errors UNC79 HGNC ENSG00000133958 101 0 0 65 25 27.7778 SERPINA5 0 genome.wustl.edu 37 14 95056470 95056470 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 95056470 95056470 C A SNP SERPINA5 ENST00000329597 human ensembl 74_37 +1 known missense c.712 p.R238S 0.000 pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom - no_errors SERPINA5 HGNC ENSG00000188488 57 0 0 28 7 20 SERPINA3 0 genome.wustl.edu 37 14 95081256 95081256 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 95081256 95081256 C T SNP SERPINA3 ENST00000393078 human ensembl 74_37 +1 known silent c.478 p.L160 0.218 pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom - no_errors SERPINA3 HGNC ENSG00000196136 50 0 0 22 11 33.3333 BDKRB2 0 genome.wustl.edu 37 14 96706965 96706965 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 96706965 96706965 C T SNP BDKRB2 ENST00000306005 human ensembl 74_37 +1 known silent c.300 p.A100 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_2_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt - no_errors BDKRB2 HGNC ENSG00000168398 175 0 0 87 50 36.4964 LYSMD4 0 genome.wustl.edu 37 15 100269416 100269416 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 100269416 100269416 G T SNP LYSMD4 ENST00000344791 human ensembl 74_37 -1 known missense c.806 p.P269Q 0.330 NULL NULL - no_errors LYSMD4 HGNC ENSG00000183060 111 0 0 60 30 33.3333 LRRK1 0 genome.wustl.edu 37 15 101565120 101565120 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 101565120 101565120 C T SNP LRRK1 ENST00000388948 human ensembl 74_37 +1 known missense c.2180 p.A727V 1.000 pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_P-loop_NTPase pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom - no_errors LRRK1 HGNC ENSG00000154237 257 1 0.387597 139 78 35.9447 DNM1P47 0 genome.wustl.edu 37 15 102291306 102291306 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 102291306 102291306 T C SNP DNM1P47 ENST00000561463 human ensembl 74_37 +1 known rna NULL NULL 0.014 - - - no_errors DNM1P47 HGNC ENSG00000259660 18 0 0 10 7 41.1765 OR4F6 0 genome.wustl.edu 37 15 102345982 102345982 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 102345982 102345982 G A SNP OR4F6 ENST00000328882 human ensembl 74_37 +1 known silent c.60 p.S20 0.001 NULL pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4F6 HGNC ENSG00000184140 140 0 0 107 17 13.7097 OR4M2 0 genome.wustl.edu 37 15 22369288 22369288 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 22369288 22369288 C T SNP OR4M2 ENST00000332663 human ensembl 74_37 +1 putative missense c.713 p.A238V 0.996 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4M2 HGNC ENSG00000182974 97 0 0 61 20 24.6914 TUBGCP5 0 genome.wustl.edu 37 15 22851104 22851104 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 22851104 22851104 C T SNP TUBGCP5 ENST00000283645 human ensembl 74_37 +1 known nonsense c.1366 p.Q456* 1.000 pfam_TUBGCP pfam_TUBGCP - no_errors TUBGCP5 HGNC ENSG00000153575 90 0 0 48 9 15.7895 SNHG14 0 genome.wustl.edu 37 15 25456809 25456809 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 25456809 25456809 G A SNP SNHG14 ENST00000424208 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors SNHG14 HGNC ENSG00000224078 26 0 0 1 3 75 GABRA5 0 genome.wustl.edu 37 15 27114364 27114364 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 27114364 27114364 T C SNP GABRA5 ENST00000557449 human ensembl 74_37 +1 known rna NULL NULL 0.102 - - - no_errors GABRA5 HGNC ENSG00000186297 49 0 0 20 6 23.0769 OCA2 0 genome.wustl.edu 37 15 28326974 28326974 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 28326974 28326974 G A SNP OCA2 ENST00000354638 human ensembl 74_37 -1 known missense c.47 p.A16V 0.112 NULL pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB - no_errors OCA2 HGNC ENSG00000104044 39 0 0 13 9 40.9091 NDNL2 0 genome.wustl.edu 37 15 29561064 29561064 + Nonsense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 29561064 29561064 G T SNP NDNL2 ENST00000332303 human ensembl 74_37 -1 known nonsense c.846 p.Y282* 0.997 pfscan_MAGE pfam_MAGE,pfscan_MAGE - no_errors NDNL2 HGNC ENSG00000185115 117 0 0 39 25 39.0625 TJP1 0 genome.wustl.edu 37 15 30029534 30029534 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 30029534 30029534 T C SNP TJP1 ENST00000346128 human ensembl 74_37 -1 known silent c.1341 p.V447 0.050 pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens - no_errors TJP1 HGNC ENSG00000104067 119 0 0 97 17 14.9123 ARHGAP11A 0 genome.wustl.edu 37 15 32929210 32929210 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 32929210 32929210 G T SNP ARHGAP11A ENST00000361627 human ensembl 74_37 +1 known missense c.2236 p.G746C 0.039 NULL pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom - no_errors ARHGAP11A HGNC ENSG00000198826 74 0 0 36 8 18.1818 SLC12A6 0 genome.wustl.edu 37 15 34532875 34532875 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 34532875 34532875 A G SNP SLC12A6 ENST00000558589 human ensembl 74_37 -1 known missense c.2396 p.L799S 0.923 tigrfam_Na/K/Cl_cotransptS pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS - no_errors SLC12A6 HGNC ENSG00000140199 73 0 0 46 18 28.125 LPCAT4 0 genome.wustl.edu 37 15 34652412 34652412 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 34652412 34652412 T C SNP LPCAT4 ENST00000314891 human ensembl 74_37 -1 known splice_site c.1144-2 e12-2 0.983 - - - no_errors LPCAT4 HGNC ENSG00000176454 63 0 0 33 16 32.6531 MEIS2 0 genome.wustl.edu 37 15 37390290 37390290 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 37390290 37390290 G A SNP MEIS2 ENST00000561208 human ensembl 74_37 -1 known silent c.123 p.H41 1.000 NULL pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors MEIS2 HGNC ENSG00000134138 99 0 0 45 29 39.1892 BUB1B 0 genome.wustl.edu 37 15 40512803 40512803 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 40512803 40512803 G A SNP BUB1B ENST00000412359 human ensembl 74_37 +1 known missense c.3038 p.R1013Q 1.000 NULL pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I - no_errors BUB1B HGNC ENSG00000156970 139 0 0 77 25 24.5098 DISP2 0 genome.wustl.edu 37 15 40661464 40661464 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 40661464 40661464 C T SNP DISP2 ENST00000267889 human ensembl 74_37 +1 known missense c.3151 p.R1051C 1.000 NULL pfscan_SSD - no_errors DISP2 HGNC ENSG00000140323 147 0 0 95 27 22.1311 RHOV 0 genome.wustl.edu 37 15 41165405 41165405 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 41165405 41165405 C T SNP RHOV ENST00000220507 human ensembl 74_37 -1 known missense c.562 p.A188T 0.990 pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors RHOV HGNC ENSG00000104140 126 0 0 63 29 31.5217 VPS18 0 genome.wustl.edu 37 15 41194934 41194934 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 41194934 41194934 G A SNP VPS18 ENST00000220509 human ensembl 74_37 +1 known missense c.2317 p.A773T 1.000 NULL pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold - no_errors VPS18 HGNC ENSG00000104142 65 0 0 41 13 24.0741 NUSAP1 0 genome.wustl.edu 37 15 41641419 41641419 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 41641419 41641419 C T SNP NUSAP1 ENST00000559596 human ensembl 74_37 +1 known missense c.286 p.R96C 0.000 NULL NULL - no_errors NUSAP1 HGNC ENSG00000137804 59 0 0 34 13 27.6596 SPTBN5 0 genome.wustl.edu 37 15 42162064 42162064 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 42162064 42162064 C T SNP SPTBN5 ENST00000320955 human ensembl 74_37 -1 known missense c.5828 p.R1943H 0.020 NULL pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology - no_errors SPTBN5 HGNC ENSG00000137877 11 0 0 5 4 44.4444 CAPN3 0 genome.wustl.edu 37 15 42703188 42703188 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 42703188 42703188 G T SNP CAPN3 ENST00000397163 human ensembl 74_37 +1 known missense c.2370 p.E790D 1.000 pfscan_EF_hand_dom pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease - no_errors CAPN3 HGNC ENSG00000092529 93 0 0 53 18 25.3521 UBR1 0 genome.wustl.edu 37 15 43378309 43378309 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 43378309 43378309 A G SNP UBR1 ENST00000290650 human ensembl 74_37 -1 known missense c.211 p.F71L 0.998 NULL pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin - no_errors UBR1 HGNC ENSG00000159459 143 0 0 79 28 26.1682 CATSPER2 0 genome.wustl.edu 37 15 43924970 43924970 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 43924970 43924970 G T SNP CATSPER2 ENST00000321596 human ensembl 74_37 -1 known silent c.1341 p.S447 0.003 NULL pfam_Ion_trans_dom - no_errors CATSPER2 HGNC ENSG00000166762 72 0 0 28 3 9.67742 CATSPER2 0 genome.wustl.edu 37 15 43925000 43925000 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 43925000 43925000 C T SNP CATSPER2 ENST00000321596 human ensembl 74_37 -1 known silent c.1311 p.K437 0.000 NULL pfam_Ion_trans_dom - no_errors CATSPER2 HGNC ENSG00000166762 74 0 0 27 14 34.1463 HYPK 0 genome.wustl.edu 37 15 44093712 44093712 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 44093712 44093712 G A SNP HYPK ENST00000498605 human ensembl 74_37 +1 known rna NULL NULL 0.911 - - - no_errors HYPK HGNC ENSG00000242028 59 0 0 25 15 37.5 WDR76 0 genome.wustl.edu 37 15 44127316 44127316 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 44127316 44127316 G A SNP WDR76 ENST00000263795 human ensembl 74_37 +1 known missense c.520 p.A174T 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat - no_errors WDR76 HGNC ENSG00000092470 72 0 0 35 15 30 DUOX1 0 genome.wustl.edu 37 15 45445636 45445636 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 45445636 45445636 C T SNP DUOX1 ENST00000321429 human ensembl 74_37 +1 known silent c.3483 p.S1161 0.983 pfam_Fe3_Rdtase_TM_dom pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal - no_errors DUOX1 HGNC ENSG00000137857 218 0 0 127 56 30.6011 SLC12A1 0 genome.wustl.edu 37 15 48566829 48566829 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 48566829 48566829 T C SNP SLC12A1 ENST00000380993 human ensembl 74_37 +1 known missense c.2464 p.S822P 1.000 tigrfam_Na/K/Cl_cotransptS pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS - no_errors SLC12A1 HGNC ENSG00000074803 28 0 0 14 10 41.6667 HDC 0 genome.wustl.edu 37 15 50534848 50534848 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 50534848 50534848 G T SNP HDC ENST00000267845 human ensembl 74_37 -1 known missense c.1598 p.P533H 0.029 NULL pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC - no_errors HDC HGNC ENSG00000140287 49 0 0 19 11 36.6667 HDC 0 genome.wustl.edu 37 15 50544900 50544900 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 50544900 50544900 G A SNP HDC ENST00000267845 human ensembl 74_37 -1 known missense c.859 p.R287W 1.000 pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC - no_errors HDC HGNC ENSG00000140287 34 0 0 17 13 43.3333 HDC 0 genome.wustl.edu 37 15 50546332 50546332 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 50546332 50546332 C T SNP HDC ENST00000267845 human ensembl 74_37 -1 known missense c.715 p.V239I 0.094 pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC - no_errors HDC HGNC ENSG00000140287 54 0 0 25 11 30.5556 UNC13C 0 genome.wustl.edu 37 15 54786884 54786884 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 54786884 54786884 A G SNP UNC13C ENST00000260323 human ensembl 74_37 +1 known missense c.5012 p.Y1671C 1.000 NULL pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom - no_errors UNC13C HGNC ENSG00000137766 135 0 0 95 21 18.1034 SLTM 0 genome.wustl.edu 37 15 59186705 59186705 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 59186705 59186705 C T SNP SLTM ENST00000380516 human ensembl 74_37 -1 known missense c.1304 p.S435N 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom - no_errors SLTM HGNC ENSG00000137776 163 0 0 113 30 20.979 FOXB1 0 genome.wustl.edu 37 15 60297193 60297193 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 60297193 60297193 G A SNP FOXB1 ENST00000396057 human ensembl 74_37 +1 known missense c.31 p.D11N 1.000 smart_TF_fork_head pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXB1 HGNC ENSG00000171956 49 0 0 18 15 45.4545 RORA 0 genome.wustl.edu 37 15 60806925 60806925 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 60806925 60806925 G A SNP RORA ENST00000261523 human ensembl 74_37 -1 known missense c.413 p.A138V 1.000 pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt - no_errors RORA HGNC ENSG00000069667 74 0 0 53 30 36.1446 TPM1 0 genome.wustl.edu 37 15 63353977 63353977 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 63353977 63353977 A G SNP TPM1 ENST00000267996 human ensembl 74_37 +1 known missense c.629 p.Q210R 1.000 pfam_Tropomyosin pfam_Tropomyosin,prints_Tropomyosin - no_errors TPM1 HGNC ENSG00000140416 40 0 0 23 3 11.5385 CILP 0 genome.wustl.edu 37 15 65497795 65497795 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 65497795 65497795 C T SNP CILP ENST00000261883 human ensembl 74_37 -1 known missense c.434 p.R145H 0.767 superfamily_Thrombospondin_1_rpt pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom - no_errors CILP HGNC ENSG00000138615 43 0 0 18 9 33.3333 CILP 0 genome.wustl.edu 37 15 65499345 65499345 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 65499345 65499345 C T SNP CILP ENST00000261883 human ensembl 74_37 -1 known missense c.199 p.G67R 0.998 NULL pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom - no_errors CILP HGNC ENSG00000138615 39 0 0 27 5 15.625 IGDCC4 0 genome.wustl.edu 37 15 65681222 65681222 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 65681222 65681222 C T SNP IGDCC4 ENST00000352385 human ensembl 74_37 -1 novel silent c.2631 p.E877 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors IGDCC4 HGNC ENSG00000103742 102 0 0 61 25 29.0698 SMAD6 0 genome.wustl.edu 37 15 67073733 67073733 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 67073733 67073733 G A SNP SMAD6 ENST00000288840 human ensembl 74_37 +1 known missense c.1351 p.E451K 0.998 pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type - no_errors SMAD6 HGNC ENSG00000137834 36 0 0 11 5 31.25 GRAMD2 0 genome.wustl.edu 37 15 72459385 72459385 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 72459385 72459385 C T SNP GRAMD2 ENST00000309731 human ensembl 74_37 -1 known missense c.421 p.A141T 1.000 NULL pfam_GRAM,smart_GRAM - no_errors GRAMD2 HGNC ENSG00000175318 89 0 0 60 14 18.9189 HCN4 0 genome.wustl.edu 37 15 73617718 73617718 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 73617718 73617718 T C SNP HCN4 ENST00000261917 human ensembl 74_37 -1 known missense c.1658 p.D553G 1.000 superfamily_cNMP-bd-like pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom - no_errors HCN4 HGNC ENSG00000138622 239 0 0 141 38 21.2291 CSK 0 genome.wustl.edu 37 15 75090973 75090973 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75090973 75090973 T C SNP CSK ENST00000220003 human ensembl 74_37 +1 known silent c.33 p.G11 1.000 superfamily_SH3_domain,pfscan_SH3_domain pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2 - no_errors CSK HGNC ENSG00000103653 45 0 0 31 11 26.1905 LMAN1L 0 genome.wustl.edu 37 15 75108796 75108796 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75108796 75108796 A G SNP LMAN1L ENST00000309664 human ensembl 74_37 +1 known missense c.359 p.H120R 0.008 pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf - no_errors LMAN1L HGNC ENSG00000140506 131 0 0 56 43 43.4343 SCAMP2 0 genome.wustl.edu 37 15 75142904 75142904 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75142904 75142904 T C SNP SCAMP2 ENST00000268099 human ensembl 74_37 -1 known missense c.583 p.T195A 1.000 pfam_SCAMP pfam_SCAMP - no_errors SCAMP2 HGNC ENSG00000140497 171 0 0 119 8 6.29921 NEIL1 0 genome.wustl.edu 37 15 75644525 75644525 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75644525 75644525 T C SNP NEIL1 ENST00000355059 human ensembl 74_37 +1 known missense c.508 p.F170L 1.000 pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_Ribosomal_S13-like_H2TH pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat - no_errors NEIL1 HGNC ENSG00000140398 81 0 0 53 9 14.5161 NEIL1 0 genome.wustl.edu 37 15 75644698 75644698 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75644698 75644698 G A SNP NEIL1 ENST00000355059 human ensembl 74_37 +1 known silent c.588 p.S196 0.034 pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_Ribosomal_S13-like_H2TH pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat - no_errors NEIL1 HGNC ENSG00000140398 156 0 0 83 33 28.4483 SIN3A 0 genome.wustl.edu 37 15 75706642 75706642 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75706642 75706642 G A SNP SIN3A ENST00000360439 human ensembl 74_37 -1 known missense c.377 p.A126V 1.000 superfamily_PAH pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact - no_errors SIN3A HGNC ENSG00000169375 22 0 0 19 6 24 CSPG4 0 genome.wustl.edu 37 15 75982670 75982670 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75982670 75982670 G A SNP CSPG4 ENST00000308508 human ensembl 74_37 -1 known missense c.736 p.R246W 0.963 pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G - no_errors CSPG4 HGNC ENSG00000173546 48 0 0 22 6 21.4286 CSPG4 0 genome.wustl.edu 37 15 75982740 75982740 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75982740 75982740 G A SNP CSPG4 ENST00000308508 human ensembl 74_37 -1 known silent c.666 p.D222 0.000 superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G - no_errors CSPG4 HGNC ENSG00000173546 49 0 0 17 4 19.0476 ZFAND6 0 genome.wustl.edu 37 15 80414053 80414053 + Splice_Site SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 80414053 80414053 G A SNP ZFAND6 ENST00000261749 human ensembl 74_37 +1 known splice_site c.155-1 e2-1 1.000 - - - no_errors ZFAND6 HGNC ENSG00000086666 56 0 0 37 9 19.5652 HOMER2 0 genome.wustl.edu 37 15 83523551 83523551 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 83523551 83523551 C T SNP HOMER2 ENST00000304231 human ensembl 74_37 -1 known missense c.529 p.A177T 0.830 NULL pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1 - no_errors HOMER2 HGNC ENSG00000103942 97 0 0 91 6 6.18557 MFGE8 0 genome.wustl.edu 37 15 89453092 89453092 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 89453092 89453092 G A SNP MFGE8 ENST00000268150 human ensembl 74_37 -1 known nonsense c.136 p.R46* 0.604 pfam_EG-like_dom,smart_EG-like_dom,pfscan_EG-like_dom pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom - no_errors MFGE8 HGNC ENSG00000140545 141 0 0 69 39 36.1111 FURIN 0 genome.wustl.edu 37 15 91424619 91424619 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 91424619 91424619 C T SNP FURIN ENST00000268171 human ensembl 74_37 +1 known silent c.1896 p.D632 0.985 superfamily_Growth_fac_rcpt_N_dom pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel - no_errors FURIN HGNC ENSG00000140564 125 0 0 77 21 21.4286 SLCO3A1 0 genome.wustl.edu 37 15 92397293 92397293 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 92397293 92397293 C T SNP SLCO3A1 ENST00000318445 human ensembl 74_37 +1 known missense c.155 p.A52V 1.000 pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter - no_errors SLCO3A1 HGNC ENSG00000176463 22 0 0 6 3 33.3333 IGF1R 0 genome.wustl.edu 37 15 99465555 99465555 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 99465555 99465555 C T SNP IGF1R ENST00000268035 human ensembl 74_37 +1 known missense c.2380 p.R794W 1.000 pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3 pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom - no_errors IGF1R HGNC ENSG00000140443 59 0 0 25 16 39.0244 BAIAP3 0 genome.wustl.edu 37 16 1397564 1397564 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1397564 1397564 C T SNP BAIAP3 ENST00000324385 human ensembl 74_37 +1 known missense c.2947 p.R983W 1.000 pfam_Munc13_subgr_dom-2 pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom - no_errors BAIAP3 HGNC ENSG00000007516 17 0 0 11 5 31.25 IFT140 0 genome.wustl.edu 37 16 1576005 1576005 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1576005 1576005 C T SNP IFT140 ENST00000426508 human ensembl 74_37 -1 known missense c.2651 p.R884Q 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT140 HGNC ENSG00000187535 17 0 0 4 3 42.8571 NDE1 0 genome.wustl.edu 37 16 15781279 15781279 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 15781279 15781279 C T SNP NDE1 ENST00000396353 human ensembl 74_37 +1 known missense c.434 p.A145V 1.000 pfam_NUDE_C pfam_NUDE_C - no_errors NDE1 HGNC ENSG00000072864 63 0 0 22 7 24.1379 MYH11 0 genome.wustl.edu 37 16 15813528 15813528 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 15813528 15813528 C T SNP MYH11 ENST00000396324 human ensembl 74_37 -1 known missense c.5017 p.A1673T 0.999 pfam_Myosin_tail,superfamily_t-SNARE pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS - no_errors MYH11 HGNC ENSG00000133392 112 0 0 60 25 29.4118 IFT140 0 genome.wustl.edu 37 16 1642178 1642178 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1642178 1642178 G A SNP IFT140 ENST00000426508 human ensembl 74_37 -1 known silent c.633 p.D211 0.993 superfamily_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT140 HGNC ENSG00000187535 74 0 0 51 19 27.1429 CRAMP1L 0 genome.wustl.edu 37 16 1706049 1706049 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1706049 1706049 C T SNP CRAMP1L ENST00000293925 human ensembl 74_37 +1 known missense c.1291 p.R431W 0.996 NULL superfamily_Homeodomain-like,smart_SANT/Myb - no_errors CRAMP1L HGNC ENSG00000007545 31 0 0 14 7 33.3333 CRAMP1L 0 genome.wustl.edu 37 16 1716093 1716093 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1716093 1716093 C T SNP CRAMP1L ENST00000293925 human ensembl 74_37 +1 known silent c.2772 p.P924 1.000 NULL superfamily_Homeodomain-like,smart_SANT/Myb - no_errors CRAMP1L HGNC ENSG00000007545 25 0 0 14 2 12.5 SMG1 0 genome.wustl.edu 37 16 18880551 18880551 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 18880551 18880551 C T SNP SMG1 ENST00000389467 human ensembl 74_37 -1 known missense c.2708 p.R903H 0.997 superfamily_ARM-type_fold pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom - no_errors SMG1 HGNC ENSG00000157106 41 0 0 23 12 34.2857 C16orf62 0 genome.wustl.edu 37 16 19702698 19702698 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 19702698 19702698 G A SNP C16orf62 ENST00000438132 human ensembl 74_37 +1 known missense c.2818 p.G940R 1.000 NULL NULL - no_errors C16orf62 HGNC ENSG00000103544 45 0 0 37 3 7.5 ZNF598 0 genome.wustl.edu 37 16 2051135 2051135 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 2051135 2051135 C T SNP ZNF598 ENST00000431526 human ensembl 74_37 -1 known silent c.1071 p.Q357 0.251 NULL superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING - no_errors ZNF598 HGNC ENSG00000167962 29 0 0 7 3 30 PKD1 0 genome.wustl.edu 37 16 2160688 2160688 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 2160688 2160688 G A SNP PKD1 ENST00000262304 human ensembl 74_37 -1 known missense c.4480 p.R1494C 0.121 pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat - no_errors PKD1 HGNC ENSG00000008710 48 0 0 15 11 42.3077 GGA2 0 genome.wustl.edu 37 16 23480253 23480253 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 23480253 23480253 G T SNP GGA2 ENST00000309859 human ensembl 74_37 -1 known missense c.1685 p.P562H 1.000 pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ENTH_VHS,superfamily_Coatomer/clathrin_app_Ig-like,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS - no_errors GGA2 HGNC ENSG00000103365 95 0 0 56 21 27.2727 TNRC6A 0 genome.wustl.edu 37 16 24801392 24801392 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 24801392 24801392 A G SNP TNRC6A ENST00000395799 human ensembl 74_37 +1 known missense c.1429 p.S477G 0.996 NULL pfam_Argonaute_hook_dom,superfamily_UBA-like - no_errors TNRC6A HGNC ENSG00000090905 56 0 0 28 13 31.7073 ZKSCAN2 0 genome.wustl.edu 37 16 25251835 25251835 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 25251835 25251835 C T SNP ZKSCAN2 ENST00000328086 human ensembl 74_37 -1 known missense c.2206 p.V736I 0.000 NULL pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN - no_errors ZKSCAN2 HGNC ENSG00000155592 51 0 0 29 22 43.1373 HS3ST4 0 genome.wustl.edu 37 16 26147016 26147016 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 26147016 26147016 G A SNP HS3ST4 ENST00000331351 human ensembl 74_37 +1 known missense c.818 p.R273H 1.000 pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase - no_errors HS3ST4 HGNC ENSG00000182601 86 0 0 40 20 33.3333 KIAA0556 0 genome.wustl.edu 37 16 27761081 27761081 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 27761081 27761081 C T SNP KIAA0556 ENST00000261588 human ensembl 74_37 +1 known missense c.2800 p.R934W 0.419 NULL superfamily_Thaumatin - no_errors KIAA0556 HGNC ENSG00000047578 34 0 0 18 4 18.1818 SRRM2 0 genome.wustl.edu 37 16 2814062 2814062 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 2814062 2814062 C T SNP SRRM2 ENST00000301740 human ensembl 74_37 +1 known missense c.3533 p.A1178V 0.003 NULL pfam_mRNA_splic_Cwf21 - no_errors SRRM2 HGNC ENSG00000167978 125 0 0 57 25 30.4878 SRRM2 0 genome.wustl.edu 37 16 2817604 2817604 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 2817604 2817604 G A SNP SRRM2 ENST00000301740 human ensembl 74_37 +1 known missense c.7075 p.A2359T 0.084 NULL pfam_mRNA_splic_Cwf21 - no_errors SRRM2 HGNC ENSG00000167978 182 0 0 78 38 32.7586 SULT1A1 0 genome.wustl.edu 37 16 28618378 28618378 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 28618378 28618378 G A SNP SULT1A1 ENST00000314752 human ensembl 74_37 -1 known silent c.393 p.N131 0.999 pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase - no_errors SULT1A1 HGNC ENSG00000196502 187 0 0 125 11 8.08824 PRSS21 0 genome.wustl.edu 37 16 2871411 2871411 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 2871411 2871411 G T SNP PRSS21 ENST00000005995 human ensembl 74_37 +1 known missense c.750 p.W250C 0.995 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1 - no_errors PRSS21 HGNC ENSG00000007038 77 0 0 60 4 6.25 ATP2A1 0 genome.wustl.edu 37 16 28909569 28909569 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 28909569 28909569 G A SNP ATP2A1 ENST00000357084 human ensembl 74_37 +1 known missense c.1561 p.V521I 1.000 superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Ca-transp_IIA pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP2A1 HGNC ENSG00000196296 133 1 0.746269 58 26 30.9524 RRN3P2 0 genome.wustl.edu 37 16 29110458 29110458 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 29110458 29110458 T C SNP RRN3P2 ENST00000427965 human ensembl 74_37 +1 known rna NULL NULL 0.991 - - - no_errors RRN3P2 HGNC ENSG00000103472 62 0 0 44 5 10.2041 NPIPB11 0 genome.wustl.edu 37 16 29394404 29394404 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 29394404 29394404 G T SNP NPIPB11 ENST00000524087 human ensembl 74_37 -1 putative missense c.1849 p.Q617K 0.108 NULL NULL - no_errors NPIPB11 HGNC ENSG00000254206 96 0 0 54 10 15.625 SEPHS2 0 genome.wustl.edu 37 16 30455992 30455992 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 30455992 30455992 C T SNP SEPHS2 ENST00000542752 human ensembl 74_37 -1 known missense c.886 p.V296I 1.000 pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD - no_errors SEPHS2 HGNC ENSG00000179918 87 0 0 55 15 21.4286 ZNF768 0 genome.wustl.edu 37 16 30536304 30536304 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 30536304 30536304 G A SNP ZNF768 ENST00000380412 human ensembl 74_37 -1 known missense c.1157 p.S386L 0.981 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF768 HGNC ENSG00000169957 49 0 0 26 7 21.2121 SRCAP 0 genome.wustl.edu 37 16 30750269 30750269 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 30750269 30750269 C A SNP SRCAP ENST00000262518 human ensembl 74_37 +1 known missense c.8908 p.P2970T 0.998 NULL pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like - no_errors SRCAP HGNC ENSG00000080603 116 0 0 74 32 30.1887 SETD1A 0 genome.wustl.edu 37 16 30982758 30982758 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 30982758 30982758 G A SNP SETD1A ENST00000262519 human ensembl 74_37 +1 known missense c.3076 p.E1026K 1.000 NULL pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom - no_errors SETD1A HGNC ENSG00000099381 182 1 0.546448 103 37 26.4286 MMP25 0 genome.wustl.edu 37 16 3100409 3100409 + Missense_Mutation SNP G G C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3100409 3100409 G C SNP MMP25 ENST00000336577 human ensembl 74_37 +1 known missense c.523 p.A175P 0.042 pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A - no_errors MMP25 HGNC ENSG00000008516 74 0 0 35 18 33.9623 ZNF646 0 genome.wustl.edu 37 16 31088572 31088572 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 31088572 31088572 G A SNP ZNF646 ENST00000300850 human ensembl 74_37 +1 known silent c.927 p.L309 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF646 HGNC ENSG00000167395 45 0 0 52 3 5.45455 ZNF646 0 genome.wustl.edu 37 16 31091411 31091411 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 31091411 31091411 C T SNP ZNF646 ENST00000300850 human ensembl 74_37 +1 known nonsense c.3766 p.R1256* 0.975 pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF646 HGNC ENSG00000167395 87 0 0 49 9 15.5172 ZNF646 0 genome.wustl.edu 37 16 31092651 31092651 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 31092651 31092651 C T SNP ZNF646 ENST00000300850 human ensembl 74_37 +1 known missense c.5006 p.A1669V 0.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF646 HGNC ENSG00000167395 50 0 0 17 10 37.037 PYDC1 0 genome.wustl.edu 37 16 31228091 31228091 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 31228091 31228091 G A SNP PYDC1 ENST00000302964 human ensembl 74_37 -1 known missense c.259 p.R87W 0.000 pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN - no_errors PYDC1 HGNC ENSG00000169900 100 0 0 57 22 27.8481 ZSCAN10 0 genome.wustl.edu 37 16 3139433 3139433 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3139433 3139433 C T SNP ZSCAN10 ENST00000252463 human ensembl 74_37 -1 known missense c.1837 p.G613S 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN - no_errors ZSCAN10 HGNC ENSG00000130182 63 0 0 24 14 36.8421 BMS1P8 0 genome.wustl.edu 37 16 33490478 33490478 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 33490478 33490478 T C SNP BMS1P8 ENST00000567036 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors BMS1P8 HGNC ENSG00000260518 22 0 0 18 6 25 TIGD7 0 genome.wustl.edu 37 16 3349597 3349597 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3349597 3349597 G A SNP TIGD7 ENST00000268674 human ensembl 74_37 -1 known missense c.1018 p.R340W 0.935 pfam_DDE_SF_endonuclease_CENPB-like pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq - no_errors TIGD7 HGNC ENSG00000140993 46 0 0 24 15 38.4615 CREBBP 0 genome.wustl.edu 37 16 3777887 3777887 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3777887 3777887 G A SNP CREBBP ENST00000262367 human ensembl 74_37 -1 known silent c.7161 p.L2387 0.269 NULL pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain - no_errors CREBBP HGNC ENSG00000005339 213 0 0 118 45 27.6074 CREBBP 0 genome.wustl.edu 37 16 3781302 3781302 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3781302 3781302 G A SNP CREBBP ENST00000262367 human ensembl 74_37 -1 known missense c.5063 p.T1688M 1.000 NULL pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain - no_errors CREBBP HGNC ENSG00000005339 52 0 0 30 5 14.2857 CREBBP 0 genome.wustl.edu 37 16 3786655 3786655 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3786655 3786655 T C SNP CREBBP ENST00000262367 human ensembl 74_37 -1 known missense c.4556 p.Y1519C 1.000 pfam_Histone_H3-K56_AcTrfase_RTT109 pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain - no_errors CREBBP HGNC ENSG00000005339 136 0 0 65 34 34.3434 SRL 0 genome.wustl.edu 37 16 4292061 4292061 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 4292061 4292061 G A SNP SRL ENST00000572111 human ensembl 74_37 -1 known missense c.8 p.A3V 0.943 NULL NULL - no_errors SRL HGNC ENSG00000185739 17 0 0 14 6 30 CORO7-PAM16 0 genome.wustl.edu 37 16 4414675 4414675 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 4414675 4414675 C T SNP CORO7-PAM16 ENST00000572467 human ensembl 74_37 -1 known missense c.1060 p.E354K 0.964 pfam_DUF1900 pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors CORO7-PAM16 HGNC ENSG00000103426 16 0 0 6 2 25 SEPT12 0 genome.wustl.edu 37 16 4834042 4834042 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 4834042 4834042 G A SNP SEPT12 ENST00000268231 human ensembl 74_37 -1 known silent c.402 p.N134 0.995 pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin pfam_Cell_div_GTP-bd,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin - no_errors SEPT12 HGNC ENSG00000140623 215 2 0.921659 120 47 28.1437 ADCY7 0 genome.wustl.edu 37 16 50342322 50342322 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 50342322 50342322 G A SNP ADCY7 ENST00000254235 human ensembl 74_37 +1 known silent c.1935 p.S645 0.990 NULL pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY7 HGNC ENSG00000121281 100 0 0 60 9 13.0435 ADCY7 0 genome.wustl.edu 37 16 50346848 50346848 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 50346848 50346848 C T SNP ADCY7 ENST00000254235 human ensembl 74_37 +1 known silent c.2652 p.S884 0.000 pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY7 HGNC ENSG00000121281 84 0 0 46 9 16.3636 BRD7 0 genome.wustl.edu 37 16 50354205 50354205 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 50354205 50354205 C T SNP BRD7 ENST00000394689 human ensembl 74_37 -1 known silent c.1713 p.P571 0.684 NULL pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors BRD7 HGNC ENSG00000166164 62 0 0 28 13 31.7073 CHD9 0 genome.wustl.edu 37 16 53276875 53276875 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 53276875 53276875 A G SNP CHD9 ENST00000398510 human ensembl 74_37 +1 known missense c.3001 p.R1001G 1.000 pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD9 HGNC ENSG00000177200 84 0 0 47 17 26.5625 IRX5 0 genome.wustl.edu 37 16 54966466 54966466 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 54966466 54966466 C T SNP IRX5 ENST00000394636 human ensembl 74_37 +1 known silent c.306 p.Y102 0.992 superfamily_Homeodomain-like pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom - no_errors IRX5 HGNC ENSG00000176842 75 0 0 35 13 27.0833 IRX6 0 genome.wustl.edu 37 16 55361530 55361530 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 55361530 55361530 G A SNP IRX6 ENST00000290552 human ensembl 74_37 +1 known missense c.446 p.R149H 1.000 superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom - no_errors IRX6 HGNC ENSG00000159387 26 0 0 11 6 35.2941 AMFR 0 genome.wustl.edu 37 16 56419830 56419830 + Splice_Site SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 56419830 56419830 C T SNP AMFR ENST00000290649 human ensembl 74_37 -1 known splice_site c.1380+1 e10+1 1.000 - - - no_errors AMFR HGNC ENSG00000159461 45 0 0 23 7 23.3333 NLRC5 0 genome.wustl.edu 37 16 57100498 57100498 + Nonsense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 57100498 57100498 G T SNP NLRC5 ENST00000262510 human ensembl 74_37 +1 known nonsense c.4294 p.E1432* 0.395 NULL pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase - no_errors NLRC5 HGNC ENSG00000140853 51 0 0 25 6 19.3548 NLRC5 0 genome.wustl.edu 37 16 57111659 57111659 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 57111659 57111659 G A SNP NLRC5 ENST00000262510 human ensembl 74_37 +1 known missense c.4948 p.G1650R 0.533 smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase - no_errors NLRC5 HGNC ENSG00000140853 88 0 0 38 21 35.5932 CNOT1 0 genome.wustl.edu 37 16 58581543 58581543 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 58581543 58581543 C T SNP CNOT1 ENST00000317147 human ensembl 74_37 -1 known missense c.3566 p.R1189H 1.000 NULL pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold - no_errors CNOT1 HGNC ENSG00000125107 42 0 0 32 16 33.3333 CDH8 0 genome.wustl.edu 37 16 61688000 61688000 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 61688000 61688000 C T SNP CDH8 ENST00000577390 human ensembl 74_37 -1 known missense c.1912 p.V638M 1.000 NULL pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH8 HGNC ENSG00000150394 46 0 0 26 7 21.2121 CDH16 0 genome.wustl.edu 37 16 66943992 66943992 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 66943992 66943992 G A SNP CDH16 ENST00000299752 human ensembl 74_37 -1 known silent c.2172 p.S724 1.000 NULL pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH16 HGNC ENSG00000166589 87 0 0 38 23 37.7049 ELMO3 0 genome.wustl.edu 37 16 67236560 67236560 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67236560 67236560 C T SNP ELMO3 ENST00000393997 human ensembl 74_37 +1 known missense c.1588 p.R530C 1.000 NULL pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold - no_errors ELMO3 HGNC ENSG00000102890 64 0 0 38 3 7.31707 LRRC36 0 genome.wustl.edu 37 16 67410682 67410682 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67410682 67410682 G A SNP LRRC36 ENST00000329956 human ensembl 74_37 +1 known silent c.1713 p.P571 1.000 NULL NULL - no_errors LRRC36 HGNC ENSG00000159708 141 0 0 83 30 26.5487 ENKD1 0 genome.wustl.edu 37 16 67697400 67697400 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67697400 67697400 G A SNP ENKD1 ENST00000243878 human ensembl 74_37 -1 known missense c.803 p.P268L 1.000 NULL NULL - no_errors ENKD1 HGNC ENSG00000124074 77 0 0 37 21 36.2069 ENSG00000221526 0 genome.wustl.edu 37 16 67911587 67911587 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67911587 67911587 G A SNP ENSG00000221526 ENST00000408599 human ensembl 74_37 +1 novel rna NULL NULL 0.000 - - - no_errors AC040162.1 Clone_based_ensembl_gene ENSG00000221526 65 0 0 40 29 42.029 CTRL 0 genome.wustl.edu 37 16 67964403 67964403 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67964403 67964403 C T SNP CTRL ENST00000574481 human ensembl 74_37 -1 known missense c.407 p.R136H 0.000 pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors CTRL HGNC ENSG00000141086 210 0 0 113 60 34.6821 LCAT 0 genome.wustl.edu 37 16 67974268 67974268 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67974268 67974268 C T SNP LCAT ENST00000264005 human ensembl 74_37 -1 known missense c.862 p.V288M 0.971 pfam_LACT/PDAT_acylTrfase pfam_LACT/PDAT_acylTrfase - no_errors LCAT HGNC ENSG00000213398 130 0 0 59 32 35.1648 NOB1 0 genome.wustl.edu 37 16 69782983 69782983 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 69782983 69782983 C T SNP NOB1 ENST00000268802 human ensembl 74_37 -1 known silent c.564 p.E188 0.011 pirsf_D-site_20S_pre-rRNA_nuclease pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease - no_errors NOB1 HGNC ENSG00000141101 89 0 0 51 11 17.7419 FUK 0 genome.wustl.edu 37 16 70505166 70505166 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 70505166 70505166 C T SNP FUK ENST00000378912 human ensembl 74_37 +1 known missense c.1348 p.R450C 0.386 pfam_Fucokinase pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase - no_errors FUK HGNC ENSG00000157353 15 0 0 6 6 50 CMTR2 0 genome.wustl.edu 37 16 71318067 71318067 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 71318067 71318067 G A SNP CMTR2 ENST00000338099 human ensembl 74_37 -1 known missense c.1757 p.S586L 0.886 NULL pfam_rRNA_MeTrfase_FtsJ_dom - no_errors CMTR2 HGNC ENSG00000180917 35 0 0 8 7 46.6667 PHLPP2 0 genome.wustl.edu 37 16 71748635 71748635 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 71748635 71748635 C T SNP PHLPP2 ENST00000356272 human ensembl 74_37 -1 known missense c.64 p.D22N 1.000 NULL pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom - no_errors PHLPP2 HGNC ENSG00000040199 47 0 0 20 9 31.0345 RBFOX1 0 genome.wustl.edu 37 16 7680608 7680608 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 7680608 7680608 C T SNP RBFOX1 ENST00000547372 human ensembl 74_37 +1 known missense c.809 p.T270M 1.000 pirsf_RNA-bd_Fox-1 pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom - no_errors RBFOX1 HGNC ENSG00000078328 56 0 0 43 12 21.8182 BANP 0 genome.wustl.edu 37 16 88061178 88061178 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 88061178 88061178 C T SNP BANP ENST00000286122 human ensembl 74_37 +1 known missense c.961 p.R321C 1.000 pfam_BEN_domain pfam_BEN_domain - no_errors BANP HGNC ENSG00000172530 140 0 0 52 24 31.5789 SNAI3 0 genome.wustl.edu 37 16 88747890 88747890 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 88747890 88747890 T C SNP SNAI3 ENST00000332281 human ensembl 74_37 -1 known silent c.309 p.V103 0.177 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SNAI3 HGNC ENSG00000185669 175 1 0.568182 117 35 23.0263 ANKRD11 0 genome.wustl.edu 37 16 89345696 89345696 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 89345696 89345696 G A SNP ANKRD11 ENST00000301030 human ensembl 74_37 -1 known silent c.7254 p.I2418 0.571 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD11 HGNC ENSG00000167522 32 0 0 8 3 27.2727 SPIRE2 0 genome.wustl.edu 37 16 89936585 89936585 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 89936585 89936585 C T SNP SPIRE2 ENST00000378247 human ensembl 74_37 +1 known missense c.2050 p.R684C 1.000 superfamily_Znf_FYVE_PHD superfamily_Znf_FYVE_PHD,smart_KIND - no_errors SPIRE2 HGNC ENSG00000204991 23 0 0 8 2 20 MYH13 0 genome.wustl.edu 37 17 10233779 10233779 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 10233779 10233779 G A SNP MYH13 ENST00000252172 human ensembl 74_37 -1 known missense c.2360 p.T787M 0.004 superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH13 HGNC ENSG00000006788 22 0 0 10 10 50 MYH8 0 genome.wustl.edu 37 17 10297588 10297588 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 10297588 10297588 C T SNP MYH8 ENST00000403437 human ensembl 74_37 -1 known missense c.5144 p.R1715H 1.000 pfam_Myosin_tail pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH8 HGNC ENSG00000133020 126 0 0 68 26 27.6596 MYH2 0 genome.wustl.edu 37 17 10450814 10450814 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 10450814 10450814 C T SNP MYH2 ENST00000245503 human ensembl 74_37 -1 known missense c.326 p.R109H 1.000 pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH2 HGNC ENSG00000125414 257 0 0 157 67 29.9107 MYH3 0 genome.wustl.edu 37 17 10545555 10545555 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 10545555 10545555 A G SNP MYH3 ENST00000226209 human ensembl 74_37 -1 known splice_site c.1959+2 e15+2 1.000 - - - no_errors MYH3 HGNC ENSG00000109063 28 0 0 5 4 44.4444 SCARF1 0 genome.wustl.edu 37 17 1542125 1542125 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 1542125 1542125 C G SNP SCARF1 ENST00000263071 human ensembl 74_37 -1 known missense c.1339 p.A447P 0.920 NULL pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom - no_errors SCARF1 HGNC ENSG00000074660 37 0 0 14 9 39.1304 TTC19 0 genome.wustl.edu 37 17 15909803 15909803 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 15909803 15909803 T C SNP TTC19 ENST00000486880 human ensembl 74_37 +1 known silent c.960 p.V320 1.000 NULL smart_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC19 HGNC ENSG00000011295 115 0 0 52 18 25.7143 NCOR1 0 genome.wustl.edu 37 17 16024504 16024504 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 16024504 16024504 G A SNP NCOR1 ENST00000268712 human ensembl 74_37 -1 known nonsense c.1714 p.R572* 0.998 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors NCOR1 HGNC ENSG00000141027 182 0 0 94 38 28.7879 ZNF624 0 genome.wustl.edu 37 17 16527079 16527079 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 16527079 16527079 C T SNP ZNF624 ENST00000311331 human ensembl 74_37 -1 known missense c.1121 p.R374H 0.034 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF624 HGNC ENSG00000197566 122 0 0 67 20 22.9885 DRG2 0 genome.wustl.edu 37 17 17997255 17997255 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 17997255 17997255 G A SNP DRG2 ENST00000225729 human ensembl 74_37 +1 known missense c.193 p.V65M 1.000 pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom - no_errors DRG2 HGNC ENSG00000108591 69 0 0 46 6 11.5385 MYO15A 0 genome.wustl.edu 37 17 18022483 18022483 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 18022483 18022483 C T SNP MYO15A ENST00000205890 human ensembl 74_37 +1 known silent c.369 p.R123 0.000 NULL pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom - no_errors MYO15A HGNC ENSG00000091536 27 0 0 10 7 41.1765 MYO15A 0 genome.wustl.edu 37 17 18034563 18034563 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 18034563 18034563 C G SNP MYO15A ENST00000205890 human ensembl 74_37 +1 known missense c.4049 p.A1350G 1.000 pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom - no_errors MYO15A HGNC ENSG00000091536 56 0 0 31 4 11.4286 FAM83G 0 genome.wustl.edu 37 17 18881325 18881325 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 18881325 18881325 C T SNP FAM83G ENST00000345041 human ensembl 74_37 -1 known missense c.1654 p.A552T 0.000 NULL pfam_DUF1669 - no_errors FAM83G HGNC ENSG00000188522 86 0 0 43 15 25.8621 SPECC1 0 genome.wustl.edu 37 17 20000031 20000031 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 20000031 20000031 C T SNP SPECC1 ENST00000261503 human ensembl 74_37 +1 known missense c.67 p.R23W 0.977 NULL pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain - no_errors SPECC1 HGNC ENSG00000128487 139 0 0 73 22 23.1579 LGALS9B 0 genome.wustl.edu 37 17 20361661 20361661 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 20361661 20361661 G A SNP LGALS9B ENST00000578481 human ensembl 74_37 -1 known nonsense c.76 p.R26* 0.023 NULL NULL - no_errors LGALS9B HGNC ENSG00000170298 34 0 0 13 7 35 USP22 0 genome.wustl.edu 37 17 20921419 20921419 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 20921419 20921419 G A SNP USP22 ENST00000261497 human ensembl 74_37 -1 known missense c.526 p.R176C 1.000 pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67 - no_errors USP22 HGNC ENSG00000124422 92 0 0 57 14 19.7183 MAP2K3 0 genome.wustl.edu 37 17 21206533 21206533 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 21206533 21206533 G A SNP MAP2K3 ENST00000342679 human ensembl 74_37 +1 known silent c.555 p.S185 0.727 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors MAP2K3 HGNC ENSG00000034152 66 0 0 46 4 8 SMG6 0 genome.wustl.edu 37 17 2200609 2200609 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 2200609 2200609 C T SNP SMG6 ENST00000263073 human ensembl 74_37 -1 known silent c.2079 p.Q693 1.000 pfam_EST1 pfam_EST1,smart_PIN_dom - no_errors SMG6 HGNC ENSG00000070366 104 0 0 43 19 30.6452 SMG6 0 genome.wustl.edu 37 17 2202996 2202996 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 2202996 2202996 G A SNP SMG6 ENST00000263073 human ensembl 74_37 -1 known missense c.1051 p.R351C 0.985 NULL pfam_EST1,smart_PIN_dom - no_errors SMG6 HGNC ENSG00000070366 99 0 0 50 11 18.0328 KSR1 0 genome.wustl.edu 37 17 25950388 25950388 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 25950388 25950388 C T SNP KSR1 ENST00000578981 human ensembl 74_37 +1 putative missense c.110 p.A37V 0.726 NULL NULL - no_errors KSR1 HGNC ENSG00000141068 30 0 0 13 5 27.7778 SUPT6H 0 genome.wustl.edu 37 17 27002046 27002046 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 27002046 27002046 A G SNP SUPT6H ENST00000314616 human ensembl 74_37 +1 known missense c.404 p.Y135C 0.997 pirsf_TF_Spt6 pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom - no_errors SUPT6H HGNC ENSG00000109111 40 0 0 19 7 26.9231 TRAF4 0 genome.wustl.edu 37 17 27076100 27076100 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 27076100 27076100 T C SNP TRAF4 ENST00000262395 human ensembl 74_37 +1 known silent c.918 p.S306 0.993 superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF - no_errors TRAF4 HGNC ENSG00000076604 93 0 0 47 4 7.84314 TAOK1 0 genome.wustl.edu 37 17 27849338 27849338 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 27849338 27849338 C T SNP TAOK1 ENST00000261716 human ensembl 74_37 +1 known missense c.1949 p.A650V 1.000 superfamily_Kinase-like_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors TAOK1 HGNC ENSG00000160551 79 0 0 37 17 31.4815 ABHD15 0 genome.wustl.edu 37 17 27889799 27889799 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 27889799 27889799 C T SNP ABHD15 ENST00000307201 human ensembl 74_37 -1 known missense c.1187 p.R396H 0.992 pirsf_AB-Hydro_YheT pirsf_AB-Hydro_YheT - no_errors ABHD15 HGNC ENSG00000168792 45 0 0 25 9 26.4706 SLC6A4 0 genome.wustl.edu 37 17 28548814 28548814 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 28548814 28548814 C T SNP SLC6A4 ENST00000261707 human ensembl 74_37 -1 known missense c.163 p.A55T 0.005 pfam_Na/ntran_symport_serotonin_N,prints_Na/ntran_symport_serotonin_N pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N - no_errors SLC6A4 HGNC ENSG00000108576 236 0 0 176 37 17.3709 SLFN5 0 genome.wustl.edu 37 17 33586029 33586029 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 33586029 33586029 G A SNP SLFN5 ENST00000299977 human ensembl 74_37 +1 known missense c.320 p.G107D 0.000 NULL pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase - no_errors SLFN5 HGNC ENSG00000166750 117 0 0 62 22 26.1905 CCL15 0 genome.wustl.edu 37 17 34325931 34325931 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 34325931 34325931 A C SNP CCL15 ENST00000354059 human ensembl 74_37 -1 known missense c.107 p.L36R 0.000 NULL pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom - no_errors CCL15 HGNC ENSG00000267596 63 0 0 34 14 29.1667 CCL18 0 genome.wustl.edu 37 17 34398397 34398397 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 34398397 34398397 C T SNP CCL18 ENST00000004921 human ensembl 74_37 +1 known missense c.266 p.A89V 0.000 superfamily_Chemokine_IL8-like_dom pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom - no_errors CCL18 HGNC ENSG00000006074 67 0 0 24 11 31.4286 AATF 0 genome.wustl.edu 37 17 35346004 35346004 + Silent SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 35346004 35346004 T A SNP AATF ENST00000225402 human ensembl 74_37 +1 known silent c.1134 p.S378 1.000 NULL pfam_AATF_C - no_errors AATF HGNC ENSG00000108270 29 0 0 33 7 17.5 ACACA 0 genome.wustl.edu 37 17 35549074 35549074 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 35549074 35549074 A C SNP ACACA ENST00000353139 human ensembl 74_37 -1 known missense c.4373 p.F1458C 1.000 pfam_AcCoA_COase_cen pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl - no_errors ACACA HGNC ENSG00000132142 86 0 0 52 14 21.2121 HNF1B 0 genome.wustl.edu 37 17 36059100 36059100 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 36059100 36059100 G A SNP HNF1B ENST00000225893 human ensembl 74_37 -1 known silent c.1635 p.N545 1.000 pfam_HNF1b_C pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors HNF1B HGNC ENSG00000108753 69 0 0 37 17 31.4815 GPR179 0 genome.wustl.edu 37 17 36484063 36484063 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 36484063 36484063 T C SNP GPR179 ENST00000342292 human ensembl 74_37 -1 known missense c.5389 p.R1797G 0.039 NULL pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C - no_errors GPR179 HGNC ENSG00000188888 152 0 0 113 8 6.61157 PCGF2 0 genome.wustl.edu 37 17 36895356 36895356 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 36895356 36895356 C T SNP PCGF2 ENST00000360797 human ensembl 74_37 -1 known missense c.281 p.R94Q 0.474 NULL pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors PCGF2 HGNC ENSG00000056661 118 0 0 64 16 20 PIP4K2B 0 genome.wustl.edu 37 17 36927329 36927329 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 36927329 36927329 C T SNP PIP4K2B ENST00000269554 human ensembl 74_37 -1 known missense c.1004 p.R335Q 1.000 pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub - no_errors PIP4K2B HGNC ENSG00000141720 72 0 0 39 8 17.0213 MED1 0 genome.wustl.edu 37 17 37566787 37566787 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 37566787 37566787 G A SNP MED1 ENST00000300651 human ensembl 74_37 -1 known missense c.1687 p.P563S 1.000 NULL pfam_Mediator_Med1_met/fun - no_errors MED1 HGNC ENSG00000125686 135 0 0 75 43 36.4407 CDK12 0 genome.wustl.edu 37 17 37627211 37627211 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 37627211 37627211 A G SNP CDK12 ENST00000447079 human ensembl 74_37 +1 known missense c.1126 p.S376G 0.993 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors CDK12 HGNC ENSG00000167258 52 0 0 23 9 28.125 WIPF2 0 genome.wustl.edu 37 17 38430168 38430168 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 38430168 38430168 C T SNP WIPF2 ENST00000323571 human ensembl 74_37 +1 known missense c.1097 p.T366M 0.999 NULL smart_WH2_dom,pfscan_WH2_dom - no_errors WIPF2 HGNC ENSG00000171475 125 0 0 81 41 33.6066 TNS4 0 genome.wustl.edu 37 17 38645087 38645087 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 38645087 38645087 G A SNP TNS4 ENST00000254051 human ensembl 74_37 -1 known nonsense c.574 p.R192* 0.995 NULL pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2 - no_errors TNS4 HGNC ENSG00000131746 107 0 0 52 15 22.3881 KRT10 0 genome.wustl.edu 37 17 38975866 38975866 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 38975866 38975866 C A SNP KRT10 ENST00000269576 human ensembl 74_37 -1 known nonsense c.1276 p.E426* 1.000 pfam_IF,prints_Keratin_I pfam_IF,superfamily_Prefoldin,prints_Keratin_I - no_errors KRT10 HGNC ENSG00000186395 122 0 0 72 33 31.4286 KRTAP4-16P 0 genome.wustl.edu 37 17 39258370 39258370 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 39258370 39258370 G A SNP KRTAP4-16P ENST00000440582 human ensembl 74_37 -1 putative missense c.92 p.T31I 0.047 NULL NULL - no_errors KRTAP4-16P HGNC ENSG00000241241 57 0 0 31 8 20.5128 KRTAP4-12 0 genome.wustl.edu 37 17 39279872 39279872 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 39279872 39279872 C T SNP KRTAP4-12 ENST00000394014 human ensembl 74_37 -1 known missense c.503 p.R168H 1.000 NULL pfam_Keratin-assoc - no_errors KRTAP4-12 HGNC ENSG00000213416 34 0 0 10 3 23.0769 GHDC 0 genome.wustl.edu 37 17 40344470 40344470 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 40344470 40344470 G A SNP GHDC ENST00000301671 human ensembl 74_37 -1 known silent c.678 p.A226 0.063 pfam_GH3 pfam_GH3 - no_errors GHDC HGNC ENSG00000167925 175 0 0 88 39 30.7087 TUBG1 0 genome.wustl.edu 37 17 40766006 40766006 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 40766006 40766006 C T SNP TUBG1 ENST00000251413 human ensembl 74_37 +1 known missense c.833 p.T278M 1.000 pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin - no_errors TUBG1 HGNC ENSG00000131462 246 0 0 126 55 30.3867 EZH1 0 genome.wustl.edu 37 17 40854922 40854922 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 40854922 40854922 G A SNP EZH1 ENST00000428826 human ensembl 74_37 -1 known missense c.2156 p.A719V 1.000 pfam_SET_dom,smart_SET_dom,pfscan_SET_dom pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom - no_errors EZH1 HGNC ENSG00000108799 199 1 0.5 120 37 23.5669 WNK4 0 genome.wustl.edu 37 17 40939342 40939342 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 40939342 40939342 G A SNP WNK4 ENST00000246914 human ensembl 74_37 +1 known missense c.1523 p.R508H 0.997 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors WNK4 HGNC ENSG00000126562 72 0 0 34 10 22.7273 BECN1 0 genome.wustl.edu 37 17 40965966 40965966 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 40965966 40965966 C G SNP BECN1 ENST00000361523 human ensembl 74_37 -1 known missense c.1041 p.K347N 1.000 pfam_Beclin_fam,superfamily_Translin pfam_Beclin_fam,superfamily_Translin - no_errors BECN1 HGNC ENSG00000126581 72 0 0 32 13 28.8889 RUNDC1 0 genome.wustl.edu 37 17 41142424 41142424 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 41142424 41142424 G A SNP RUNDC1 ENST00000361677 human ensembl 74_37 +1 known missense c.947 p.S316N 0.000 NULL pfam_Run,smart_Run,pfscan_Run - no_errors RUNDC1 HGNC ENSG00000198863 72 0 0 45 20 30.7692 UBTF 0 genome.wustl.edu 37 17 42284915 42284915 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 42284915 42284915 T A SNP UBTF ENST00000302904 human ensembl 74_37 -1 known missense c.2076 p.E692D 0.964 superfamily_ARM-type_fold pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom - no_errors UBTF HGNC ENSG00000108312 39 0 0 22 13 37.1429 HEXIM1 0 genome.wustl.edu 37 17 43227260 43227260 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 43227260 43227260 G A SNP HEXIM1 ENST00000332499 human ensembl 74_37 +1 known missense c.703 p.D235N 1.000 NULL NULL - no_errors HEXIM1 HGNC ENSG00000186834 71 0 0 27 14 34.1463 B4GALNT2 0 genome.wustl.edu 37 17 47210502 47210502 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 47210502 47210502 G A SNP B4GALNT2 ENST00000300404 human ensembl 74_37 +1 known missense c.115 p.G39R 0.000 pirsf_GM2_synthase pfam_Glyco_trans_2,pirsf_GM2_synthase - no_errors B4GALNT2 HGNC ENSG00000167080 12 0 0 1 4 80 NGFR 0 genome.wustl.edu 37 17 47590364 47590364 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 47590364 47590364 C T SNP NGFR ENST00000172229 human ensembl 74_37 +1 known missense c.1277 p.P426L 0.989 NULL pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16 - no_errors NGFR HGNC ENSG00000064300 22 0 0 7 6 46.1538 RSAD1 0 genome.wustl.edu 37 17 48560736 48560736 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 48560736 48560736 G T SNP RSAD1 ENST00000258955 human ensembl 74_37 +1 known missense c.940 p.G314C 0.000 pfam_HemN_C_dom,tigrfam_Coprogen_oxidase_HemN-rel pfam_HemN_C_dom,pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_Coprogen_oxidase_HemN-rel - no_errors RSAD1 HGNC ENSG00000136444 36 0 0 20 10 33.3333 SPATA20 0 genome.wustl.edu 37 17 48628888 48628888 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 48628888 48628888 C T SNP SPATA20 ENST00000006658 human ensembl 74_37 +1 known silent c.1593 p.G531 0.994 superfamily_6-hairpin_glycosidase-like pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold - no_errors SPATA20 HGNC ENSG00000006282 110 0 0 65 20 23.5294 KIF2B 0 genome.wustl.edu 37 17 51901779 51901779 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 51901779 51901779 G A SNP KIF2B ENST00000268919 human ensembl 74_37 +1 known missense c.1385 p.R462Q 1.000 pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF2B HGNC ENSG00000141200 50 0 0 24 9 27.2727 RABEP1 0 genome.wustl.edu 37 17 5250183 5250183 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 5250183 5250183 G A SNP RABEP1 ENST00000262477 human ensembl 74_37 +1 known silent c.747 p.Q249 1.000 prints_Rabaptin pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin - no_errors RABEP1 HGNC ENSG00000029725 43 0 0 19 5 20.8333 STXBP4 0 genome.wustl.edu 37 17 53158486 53158486 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 53158486 53158486 G A SNP STXBP4 ENST00000376352 human ensembl 74_37 +1 known silent c.1431 p.T477 0.000 NULL pfam_WW_dom,pfam_PDZ,superfamily_PDZ,superfamily_WW_dom,smart_PDZ,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom - no_errors STXBP4 HGNC ENSG00000166263 39 0 0 22 12 35.2941 OR4D2 0 genome.wustl.edu 37 17 56247177 56247177 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 56247177 56247177 A G SNP OR4D2 ENST00000545221 human ensembl 74_37 +1 known missense c.161 p.Q54R 0.001 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4D2 HGNC ENSG00000255713 164 0 0 55 39 41.4894 C17orf47 0 genome.wustl.edu 37 17 56620148 56620148 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 56620148 56620148 C A SNP C17orf47 ENST00000321691 human ensembl 74_37 -1 known missense c.1400 p.S467I 0.003 NULL NULL - no_errors C17orf47 HGNC ENSG00000181013 237 0 0 60 50 45.4545 SKA2 0 genome.wustl.edu 37 17 57189647 57189647 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 57189647 57189647 T C SNP SKA2 ENST00000330137 human ensembl 74_37 -1 known silent c.357 p.P119 0.208 NULL NULL - no_errors SKA2 HGNC ENSG00000182628 46 0 0 28 8 22.2222 PTRH2 0 genome.wustl.edu 37 17 57775153 57775153 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 57775153 57775153 C T SNP PTRH2 ENST00000393038 human ensembl 74_37 -1 known missense c.187 p.G63R 1.000 superfamily_Pep_tRNA_hydro_II_dom pfam_PTH2,superfamily_Pep_tRNA_hydro_II_dom,tigrfam_PTH2 - no_errors PTRH2 HGNC ENSG00000141378 84 0 0 45 22 32.8358 TBX2 0 genome.wustl.edu 37 17 59482855 59482855 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 59482855 59482855 G A SNP TBX2 ENST00000240328 human ensembl 74_37 +1 novel silent c.1344 p.A448 1.000 NULL pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury - no_errors TBX2 HGNC ENSG00000121068 9 0 0 5 3 37.5 MED13 0 genome.wustl.edu 37 17 60072703 60072703 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 60072703 60072703 G T SNP MED13 ENST00000397786 human ensembl 74_37 -1 known missense c.1991 p.P664H 1.000 NULL pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun - no_errors MED13 HGNC ENSG00000108510 70 0 0 27 4 12.9032 ACE 0 genome.wustl.edu 37 17 61560033 61560033 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 61560033 61560033 G A SNP ACE ENST00000290866 human ensembl 74_37 +1 known missense c.1325 p.R442H 0.000 pfam_Peptidase_M2 pfam_Peptidase_M2,prints_Peptidase_M2 - no_errors ACE HGNC ENSG00000159640 101 0 0 48 15 23.8095 STRADA 0 genome.wustl.edu 37 17 61788193 61788193 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 61788193 61788193 C T SNP STRADA ENST00000336174 human ensembl 74_37 -1 known missense c.352 p.E118K 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors STRADA HGNC ENSG00000266173 48 0 0 22 11 33.3333 FTSJ3 0 genome.wustl.edu 37 17 61897668 61897668 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 61897668 61897668 T C SNP FTSJ3 ENST00000427159 human ensembl 74_37 -1 known missense c.2203 p.N735D 1.000 pfam_rRNA_MeTfrase_Spb1_C pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381 - no_errors FTSJ3 HGNC ENSG00000108592 220 0 0 119 39 24.6835 SCN4A 0 genome.wustl.edu 37 17 62024461 62024461 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 62024461 62024461 G A SNP SCN4A ENST00000435607 human ensembl 74_37 -1 known missense c.3385 p.R1129W 0.985 pfam_Ion_trans_dom pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN4A HGNC ENSG00000007314 87 0 0 28 15 34.8837 DDX5 0 genome.wustl.edu 37 17 62496890 62496890 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 62496890 62496890 A G SNP DDX5 ENST00000225792 human ensembl 74_37 -1 known silent c.1218 p.D406 1.000 pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX5 HGNC ENSG00000108654 67 0 0 55 3 5.17241 AIPL1 0 genome.wustl.edu 37 17 6331701 6331701 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 6331701 6331701 G A SNP AIPL1 ENST00000381129 human ensembl 74_37 -1 known silent c.402 p.Y134 0.999 NULL pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom - no_errors AIPL1 HGNC ENSG00000129221 83 0 0 51 8 13.5593 PITPNM3 0 genome.wustl.edu 37 17 6380417 6380417 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 6380417 6380417 C T SNP PITPNM3 ENST00000262483 human ensembl 74_37 -1 known silent c.1017 p.P339 0.007 NULL pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD - no_errors PITPNM3 HGNC ENSG00000091622 41 0 0 23 5 17.8571 FAM57A 0 genome.wustl.edu 37 17 644552 644552 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 644552 644552 G A SNP FAM57A ENST00000308278 human ensembl 74_37 +1 known silent c.516 p.Q172 1.000 pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom - no_errors FAM57A HGNC ENSG00000167695 82 0 0 45 17 27.4194 KPNA2 0 genome.wustl.edu 37 17 66038247 66038247 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 66038247 66038247 C T SNP KPNA2 ENST00000330459 human ensembl 74_37 +1 known missense c.349 p.R117W 0.537 pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB - no_errors KPNA2 HGNC ENSG00000182481 83 0 0 48 24 33.3333 ABCA6 0 genome.wustl.edu 37 17 67075398 67075398 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 67075398 67075398 T C SNP ABCA6 ENST00000284425 human ensembl 74_37 -1 known missense c.4705 p.N1569D 0.000 NULL pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCA6 HGNC ENSG00000154262 56 0 0 31 13 29.5455 KCNJ16 0 genome.wustl.edu 37 17 68129031 68129031 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 68129031 68129031 G A SNP KCNJ16 ENST00000283936 human ensembl 74_37 +1 known missense c.803 p.R268H 0.999 pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir - no_errors KCNJ16 HGNC ENSG00000153822 149 0 0 100 32 24.2424 RNMTL1 0 genome.wustl.edu 37 17 686479 686479 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 686479 686479 C A SNP RNMTL1 ENST00000304478 human ensembl 74_37 +1 known silent c.471 p.V157 0.000 pfam_SpoU_subst-bd,smart_SpoU_subst-bd pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd - no_errors RNMTL1 HGNC ENSG00000171861 58 0 0 27 11 28.9474 DVL2 0 genome.wustl.edu 37 17 7133463 7133463 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7133463 7133463 G T SNP DVL2 ENST00000005340 human ensembl 74_37 -1 known missense c.422 p.S141Y 0.986 NULL pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_2,prints_Dishevelled_fam - no_errors DVL2 HGNC ENSG00000004975 72 0 0 44 16 26.6667 C17orf74 0 genome.wustl.edu 37 17 7329696 7329696 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7329696 7329696 G A SNP C17orf74 ENST00000333870 human ensembl 74_37 +1 known missense c.386 p.R129H 0.000 NULL NULL - no_errors C17orf74 HGNC ENSG00000184560 100 0 0 38 29 43.2836 C17orf74 0 genome.wustl.edu 37 17 7329702 7329702 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7329702 7329702 A G SNP C17orf74 ENST00000333870 human ensembl 74_37 +1 known missense c.392 p.H131R 0.000 NULL NULL - no_errors C17orf74 HGNC ENSG00000184560 94 0 0 40 21 34.4262 KIAA0195 0 genome.wustl.edu 37 17 73484941 73484941 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 73484941 73484941 G A SNP KIAA0195 ENST00000314256 human ensembl 74_37 +1 known silent c.714 p.Q238 1.000 NULL pfam_ATPase_P-typ_cation-transptr_C - no_errors KIAA0195 HGNC ENSG00000177728 161 0 0 110 9 7.56303 TSEN54 0 genome.wustl.edu 37 17 73513713 73513713 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 73513713 73513713 A G SNP TSEN54 ENST00000333213 human ensembl 74_37 +1 known missense c.445 p.T149A 0.010 NULL NULL - no_errors TSEN54 HGNC ENSG00000182173 249 0 0 201 15 6.94444 ITGB4 0 genome.wustl.edu 37 17 73733713 73733713 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 73733713 73733713 T C SNP ITGB4 ENST00000200181 human ensembl 74_37 +1 known silent c.2208 p.C736 0.999 pirsf_Integrin_bsu-4 pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3 - no_errors ITGB4 HGNC ENSG00000132470 35 0 0 25 3 10.7143 EVPL 0 genome.wustl.edu 37 17 74003238 74003238 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 74003238 74003238 C A SNP EVPL ENST00000301607 human ensembl 74_37 -1 known missense c.6048 p.E2016D 0.993 NULL pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat - no_errors EVPL HGNC ENSG00000167880 68 0 0 32 12 27.2727 POLR2A 0 genome.wustl.edu 37 17 7402445 7402445 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7402445 7402445 C T SNP POLR2A ENST00000322644 human ensembl 74_37 +1 known missense c.1423 p.R475C 1.000 pfam_RNA_pol_asu,smart_RNA_pol_N pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N - no_errors POLR2A HGNC ENSG00000181222 145 0 0 86 43 33.3333 GALR2 0 genome.wustl.edu 37 17 74073381 74073381 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 74073381 74073381 A G SNP GALR2 ENST00000329003 human ensembl 74_37 +1 known missense c.1033 p.M345V 0.807 prints_GAL2_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt - no_errors GALR2 HGNC ENSG00000182687 11 0 0 9 5 35.7143 SENP3 0 genome.wustl.edu 37 17 7469041 7469041 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7469041 7469041 A G SNP SENP3 ENST00000429205 human ensembl 74_37 +1 known missense c.1223 p.N408S 1.000 pfam_Peptidase_C48,pfscan_Peptidase_C48 pfam_Peptidase_C48,pfscan_Peptidase_C48 - no_errors SENP3 HGNC ENSG00000161956 54 0 0 43 3 6.52174 LGALS3BP 0 genome.wustl.edu 37 17 76968444 76968444 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 76968444 76968444 G T SNP LGALS3BP ENST00000262776 human ensembl 74_37 -1 known silent c.972 p.A324 0.078 pfam_BACK,smart_BACK pfam_SRCR,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,pfscan_BTB/POZ-like,pfscan_SRCR,prints_SRCR - no_errors LGALS3BP HGNC ENSG00000108679 56 0 0 26 17 39.5349 CHD3 0 genome.wustl.edu 37 17 7797559 7797559 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7797559 7797559 C T SNP CHD3 ENST00000330494 human ensembl 74_37 +1 known missense c.1051 p.R351W 0.999 superfamily_Znf_FYVE_PHD pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD3 HGNC ENSG00000170004 37 0 0 19 7 26.9231 GUCY2D 0 genome.wustl.edu 37 17 7909952 7909952 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7909952 7909952 G A SNP GUCY2D ENST00000254854 human ensembl 74_37 +1 known missense c.1298 p.R433Q 0.007 superfamily_Peripla_BP_I pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors GUCY2D HGNC ENSG00000132518 36 0 0 17 12 41.3793 AATK 0 genome.wustl.edu 37 17 79108237 79108237 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 79108237 79108237 G A SNP AATK ENST00000326724 human ensembl 74_37 -1 known silent c.120 p.S40 0.959 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors AATK HGNC ENSG00000181409 49 0 0 30 7 18.9189 SLC38A10 0 genome.wustl.edu 37 17 79234093 79234093 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 79234093 79234093 G A SNP SLC38A10 ENST00000374759 human ensembl 74_37 -1 known silent c.1233 p.G411 0.000 NULL pfam_AA_transpt_TM - no_errors SLC38A10 HGNC ENSG00000157637 14 0 0 7 3 30 C17orf70 0 genome.wustl.edu 37 17 79514275 79514275 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 79514275 79514275 G A SNP C17orf70 ENST00000327787 human ensembl 74_37 -1 known silent c.1833 p.G611 0.000 NULL NULL - no_errors C17orf70 HGNC ENSG00000185504 93 0 0 40 21 34.4262 AURKB 0 genome.wustl.edu 37 17 8108286 8108286 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 8108286 8108286 G A SNP AURKB ENST00000585124 human ensembl 74_37 -1 known missense c.938 p.S313L 0.310 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors AURKB HGNC ENSG00000178999 58 0 0 16 16 50 KRBA2 0 genome.wustl.edu 37 17 8273299 8273299 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 8273299 8273299 C T SNP KRBA2 ENST00000331336 human ensembl 74_37 -1 known missense c.632 p.R211H 0.715 NULL pfam_Krueppel-associated_box,superfamily_RNaseH-like_dom,superfamily_Krueppel-associated_box,pfscan_Integrase_cat-core - no_errors KRBA2 HGNC ENSG00000184619 122 1 0.813008 99 6 5.71429 WDR16 0 genome.wustl.edu 37 17 9536336 9536336 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 9536336 9536336 G A SNP WDR16 ENST00000299764 human ensembl 74_37 +1 known missense c.1336 p.G446S 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR16 HGNC ENSG00000166596 65 0 0 31 16 34.0426 GNAL 0 genome.wustl.edu 37 18 11876645 11876645 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 11876645 11876645 C A SNP GNAL ENST00000334049 human ensembl 74_37 +1 known silent c.1188 p.P396 1.000 pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_S - no_errors GNAL HGNC ENSG00000141404 100 0 0 40 20 33.3333 SPIRE1 0 genome.wustl.edu 37 18 12506563 12506563 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 12506563 12506563 G A SNP SPIRE1 ENST00000409402 human ensembl 74_37 -1 known silent c.885 p.N295 1.000 NULL superfamily_Znf_FYVE_PHD,smart_KIND - no_errors SPIRE1 HGNC ENSG00000134278 180 0 0 93 38 29.0076 SMCHD1 0 genome.wustl.edu 37 18 2775770 2775770 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 2775770 2775770 G A SNP SMCHD1 ENST00000320876 human ensembl 74_37 +1 known silent c.5214 p.A1738 0.988 pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge - no_errors SMCHD1 HGNC ENSG00000101596 58 0 0 41 26 38.806 DSC2 0 genome.wustl.edu 37 18 28666590 28666590 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 28666590 28666590 C T SNP DSC2 ENST00000280904 human ensembl 74_37 -1 known missense c.891 p.M297I 0.996 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin - no_errors DSC2 HGNC ENSG00000134755 182 0 0 127 47 27.0115 TRAPPC8 0 genome.wustl.edu 37 18 29488794 29488794 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 29488794 29488794 G A SNP TRAPPC8 ENST00000283351 human ensembl 74_37 -1 known nonsense c.1045 p.R349* 1.000 NULL NULL - no_errors TRAPPC8 HGNC ENSG00000153339 72 0 0 29 25 46.2963 NOL4 0 genome.wustl.edu 37 18 31803175 31803175 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 31803175 31803175 A G SNP NOL4 ENST00000261592 human ensembl 74_37 -1 known missense c.43 p.C15R 1.000 NULL NULL - no_errors NOL4 HGNC ENSG00000101746 98 0 0 48 14 22.5806 SLC14A2 0 genome.wustl.edu 37 18 43224100 43224100 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 43224100 43224100 C T SNP SLC14A2 ENST00000255226 human ensembl 74_37 +1 known silent c.1326 p.S442 0.002 NULL pfam_Urea_transporter - no_errors SLC14A2 HGNC ENSG00000132874 154 0 0 78 37 32.1739 SIGLEC15 0 genome.wustl.edu 37 18 43418949 43418949 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 43418949 43418949 T C SNP SIGLEC15 ENST00000389474 human ensembl 74_37 +1 known missense c.763 p.F255L 0.999 NULL pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom - no_errors SIGLEC15 HGNC ENSG00000197046 20 0 0 9 3 25 EPG5 0 genome.wustl.edu 37 18 43469907 43469907 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 43469907 43469907 T C SNP EPG5 ENST00000282041 human ensembl 74_37 -1 known splice_site c.4810-2 e28-2 1.000 - - - no_errors EPG5 HGNC ENSG00000152223 33 0 0 21 3 12.5 TCEB3B 0 genome.wustl.edu 37 18 44560047 44560047 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 44560047 44560047 C T SNP TCEB3B ENST00000332567 human ensembl 74_37 -1 known missense c.1589 p.R530H 0.000 NULL pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub - no_errors TCEB3B HGNC ENSG00000206181 125 0 0 65 33 33.6735 HDHD2 0 genome.wustl.edu 37 18 44641701 44641701 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 44641701 44641701 T C SNP HDHD2 ENST00000300605 human ensembl 74_37 -1 known silent c.414 p.A138 0.103 pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA - no_errors HDHD2 HGNC ENSG00000167220 48 0 0 31 7 18.4211 SMAD2 0 genome.wustl.edu 37 18 45372100 45372100 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 45372100 45372100 C T SNP SMAD2 ENST00000262160 human ensembl 74_37 -1 known missense c.1069 p.V357M 1.000 pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type - no_errors SMAD2 HGNC ENSG00000175387 95 0 0 62 18 22.5 ZBTB7C 0 genome.wustl.edu 37 18 45566686 45566686 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 45566686 45566686 C T SNP ZBTB7C ENST00000332053 human ensembl 74_37 -1 known missense c.793 p.G265S 0.767 NULL pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB7C HGNC ENSG00000184828 72 0 0 20 12 37.5 DCC 0 genome.wustl.edu 37 18 50985626 50985626 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 50985626 50985626 C T SNP DCC ENST00000442544 human ensembl 74_37 +1 known silent c.3417 p.G1139 1.000 pfam_Neogenin_C pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors DCC HGNC ENSG00000187323 55 0 0 26 13 33.3333 EPB41L3 0 genome.wustl.edu 37 18 5419926 5419926 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 5419926 5419926 T C SNP EPB41L3 ENST00000544123 human ensembl 74_37 -1 known silent c.1344 p.S448 1.000 pirsf_Band_41_protein pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain - no_errors EPB41L3 HGNC ENSG00000082397 62 0 0 31 12 27.907 CDH19 0 genome.wustl.edu 37 18 64218423 64218423 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 64218423 64218423 T C SNP CDH19 ENST00000262150 human ensembl 74_37 -1 known missense c.683 p.D228G 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH19 HGNC ENSG00000071991 111 0 0 78 7 8.23529 ZNF407 0 genome.wustl.edu 37 18 72775812 72775812 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 72775812 72775812 G T SNP ZNF407 ENST00000299687 human ensembl 74_37 +1 known missense c.6135 p.Q2045H 0.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2 - no_errors ZNF407 HGNC ENSG00000215421 57 0 0 31 7 18.4211 SALL3 0 genome.wustl.edu 37 18 76753092 76753092 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 76753092 76753092 C T SNP SALL3 ENST00000537592 human ensembl 74_37 +1 known silent c.1101 p.S367 0.002 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SALL3 HGNC ENSG00000256463 18 0 0 5 4 44.4444 SALL3 0 genome.wustl.edu 37 18 76754571 76754571 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 76754571 76754571 C T SNP SALL3 ENST00000537592 human ensembl 74_37 +1 known silent c.2580 p.T860 0.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SALL3 HGNC ENSG00000256463 128 0 0 55 21 27.6316 CTDP1 0 genome.wustl.edu 37 18 77475256 77475256 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 77475256 77475256 G A SNP CTDP1 ENST00000299543 human ensembl 74_37 +1 known missense c.1796 p.R599H 0.758 NULL pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk - no_errors CTDP1 HGNC ENSG00000060069 16 0 0 8 7 46.6667 ANKRD12 0 genome.wustl.edu 37 18 9255253 9255253 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 9255253 9255253 A G SNP ANKRD12 ENST00000262126 human ensembl 74_37 +1 known missense c.1988 p.E663G 1.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors ANKRD12 HGNC ENSG00000101745 37 0 0 20 8 28.5714 EIF3G 0 genome.wustl.edu 37 19 10226201 10226201 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 10226201 10226201 A G SNP EIF3G ENST00000253108 human ensembl 74_37 -1 known missense c.901 p.S301P 1.000 pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom - no_errors EIF3G HGNC ENSG00000130811 93 0 0 56 12 17.6471 PDE4A 0 genome.wustl.edu 37 19 10531499 10531499 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 10531499 10531499 G A SNP PDE4A ENST00000352831 human ensembl 74_37 +1 known missense c.59 p.R20Q 1.000 NULL pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE4A HGNC ENSG00000065989 23 0 0 5 4 44.4444 KEAP1 0 genome.wustl.edu 37 19 10610652 10610652 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 10610652 10610652 G A SNP KEAP1 ENST00000171111 human ensembl 74_37 -1 known nonsense c.58 p.Q20* 0.007 pirsf_Kelch-like_gigaxonin pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like - no_errors KEAP1 HGNC ENSG00000079999 60 0 0 36 3 7.69231 SMARCA4 0 genome.wustl.edu 37 19 11107211 11107211 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 11107211 11107211 G A SNP SMARCA4 ENST00000358026 human ensembl 74_37 +1 known silent c.1803 p.P601 0.023 NULL pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain - no_errors SMARCA4 HGNC ENSG00000127616 113 0 0 51 21 29.1667 ELAVL3 0 genome.wustl.edu 37 19 11569369 11569369 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 11569369 11569369 C T SNP ELAVL3 ENST00000359227 human ensembl 74_37 -1 known missense c.391 p.G131R 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF - no_errors ELAVL3 HGNC ENSG00000196361 156 1 0.636943 102 41 28.6713 ZNF653 0 genome.wustl.edu 37 19 11597866 11597866 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 11597866 11597866 C T SNP ZNF653 ENST00000293771 human ensembl 74_37 -1 known missense c.1279 p.G427R 0.544 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF653 HGNC ENSG00000161914 77 0 0 57 5 8.06452 ZNF700 0 genome.wustl.edu 37 19 12060023 12060023 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 12060023 12060023 G A SNP ZNF700 ENST00000254321 human ensembl 74_37 +1 known missense c.1184 p.C395Y 0.980 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF700 HGNC ENSG00000196757 63 0 0 26 11 29.7297 ZNF799 0 genome.wustl.edu 37 19 12501767 12501767 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 12501767 12501767 C T SNP ZNF799 ENST00000430385 human ensembl 74_37 -1 known missense c.1445 p.G482E 0.998 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF799 HGNC ENSG00000196466 106 0 0 36 13 26.5306 FBXW9 0 genome.wustl.edu 37 19 12800856 12800856 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 12800856 12800856 G A SNP FBXW9 ENST00000380339 human ensembl 74_37 -1 known missense c.1042 p.R348W 0.998 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors FBXW9 HGNC ENSG00000132004 133 1 0.746269 70 23 24.7312 MAST1 0 genome.wustl.edu 37 19 12985485 12985485 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 12985485 12985485 C A SNP MAST1 ENST00000251472 human ensembl 74_37 +1 known missense c.4514 p.P1505Q 0.967 NULL pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom - no_errors MAST1 HGNC ENSG00000105613 44 0 0 20 11 35.4839 TRMT1 0 genome.wustl.edu 37 19 13226178 13226178 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 13226178 13226178 A C SNP TRMT1 ENST00000357720 human ensembl 74_37 -1 known missense c.556 p.S186A 1.000 pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,tigrfam_TRM1 pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1 - no_errors TRMT1 HGNC ENSG00000104907 85 0 0 55 17 23.6111 IL27RA 0 genome.wustl.edu 37 19 14157020 14157020 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 14157020 14157020 C T SNP IL27RA ENST00000263379 human ensembl 74_37 +1 known missense c.823 p.R275C 0.000 superfamily_Fibronectin_type3 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors IL27RA HGNC ENSG00000104998 238 0 0 119 51 30 LPHN1 0 genome.wustl.edu 37 19 14261714 14261714 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 14261714 14261714 C T SNP LPHN1 ENST00000340736 human ensembl 74_37 -1 known missense c.4396 p.G1466R 1.000 pfam_GPCR_2_latrophilin_rcpt_C pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like - no_errors LPHN1 HGNC ENSG00000072071 36 0 0 28 4 12.5 LPHN1 0 genome.wustl.edu 37 19 14266920 14266920 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 14266920 14266920 A G SNP LPHN1 ENST00000340736 human ensembl 74_37 -1 known splice_site c.3140+2 e17+2 1.000 - - - no_errors LPHN1 HGNC ENSG00000072071 49 0 0 19 6 24 LPHN1 0 genome.wustl.edu 37 19 14273846 14273846 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 14273846 14273846 C T SNP LPHN1 ENST00000340736 human ensembl 74_37 -1 known missense c.782 p.R261H 1.000 pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like - no_errors LPHN1 HGNC ENSG00000072071 52 0 0 30 6 16.6667 SLC1A6 0 genome.wustl.edu 37 19 15065111 15065111 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 15065111 15065111 G A SNP SLC1A6 ENST00000221742 human ensembl 74_37 -1 known silent c.1200 p.C400 1.000 pfam_Na-dicarboxylate_symporter pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter - no_errors SLC1A6 HGNC ENSG00000105143 85 0 0 49 17 25.7576 NOTCH3 0 genome.wustl.edu 37 19 15271758 15271758 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 15271758 15271758 G A SNP NOTCH3 ENST00000263388 human ensembl 74_37 -1 known silent c.6681 p.H2227 0.002 pirsf_Notch,pfam_DUF3454_notch pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom - no_errors NOTCH3 HGNC ENSG00000074181 14 0 0 4 2 33.3333 CYP4F12 0 genome.wustl.edu 37 19 15791216 15791216 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 15791216 15791216 C T SNP CYP4F12 ENST00000547332 human ensembl 74_37 +1 known missense c.302 p.A101V 0.996 NULL NULL - no_errors CYP4F12 HGNC ENSG00000186204 37 0 0 10 6 37.5 OR10H5 0 genome.wustl.edu 37 19 15905398 15905398 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 15905398 15905398 C T SNP OR10H5 ENST00000308940 human ensembl 74_37 +1 known silent c.540 p.H180 0.001 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10H5 HGNC ENSG00000172519 89 0 0 46 3 6.12245 MYO9B 0 genome.wustl.edu 37 19 17213232 17213232 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 17213232 17213232 C T SNP MYO9B ENST00000594824 human ensembl 74_37 +1 known silent c.705 p.I235 0.984 pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom - no_errors MYO9B HGNC ENSG00000099331 75 0 0 35 23 39.6552 ABHD8 0 genome.wustl.edu 37 19 17412369 17412369 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 17412369 17412369 G A SNP ABHD8 ENST00000247706 human ensembl 74_37 -1 known silent c.57 p.N19 0.931 NULL pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like - no_errors ABHD8 HGNC ENSG00000127220 50 0 0 29 10 25.641 BST2 0 genome.wustl.edu 37 19 17516268 17516268 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 17516268 17516268 C T SNP BST2 ENST00000252593 human ensembl 74_37 -1 known silent c.117 p.V39 0.000 NULL superfamily_Prefoldin - no_errors BST2 HGNC ENSG00000130303 77 0 0 50 13 20.6349 MAP1S 0 genome.wustl.edu 37 19 17844195 17844195 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 17844195 17844195 C T SNP MAP1S ENST00000324096 human ensembl 74_37 +1 known silent c.2982 p.D994 0.718 NULL NULL - no_errors MAP1S HGNC ENSG00000130479 23 0 0 13 4 23.5294 JAK3 0 genome.wustl.edu 37 19 17937670 17937670 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 17937670 17937670 G T SNP JAK3 ENST00000458235 human ensembl 74_37 -1 known missense c.3257 p.P1086Q 0.947 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors JAK3 HGNC ENSG00000105639 118 0 0 54 15 21.7391 KIAA1683 0 genome.wustl.edu 37 19 18377082 18377082 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 18377082 18377082 A G SNP KIAA1683 ENST00000392413 human ensembl 74_37 -1 known missense c.1268 p.I423T 0.000 NULL pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS - no_errors KIAA1683 HGNC ENSG00000130518 120 0 0 50 14 21.875 COMP 0 genome.wustl.edu 37 19 18898336 18898336 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 18898336 18898336 G A SNP COMP ENST00000222271 human ensembl 74_37 -1 known missense c.1099 p.R367W 0.067 pfam_Thrombospondin_3-like_rpt pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom - no_errors COMP HGNC ENSG00000105664 222 0 0 100 50 33.3333 NCAN 0 genome.wustl.edu 37 19 19338599 19338599 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 19338599 19338599 T C SNP NCAN ENST00000252575 human ensembl 74_37 +1 known missense c.2170 p.S724P 0.001 NULL pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII - no_errors NCAN HGNC ENSG00000130287 101 0 0 59 28 32.1839 HAPLN4 0 genome.wustl.edu 37 19 19369374 19369374 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 19369374 19369374 C T SNP HAPLN4 ENST00000291481 human ensembl 74_37 -1 known missense c.775 p.E259K 0.002 pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link - no_errors HAPLN4 HGNC ENSG00000187664 78 0 0 53 18 25.3521 GATAD2A 0 genome.wustl.edu 37 19 19606902 19606902 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 19606902 19606902 G A SNP GATAD2A ENST00000358713 human ensembl 74_37 +1 known silent c.798 p.P266 0.130 NULL pfam_Znf_GATA,pfscan_Znf_GATA - no_errors GATAD2A HGNC ENSG00000167491 44 0 0 33 9 21.4286 TSSK6 0 genome.wustl.edu 37 19 19626062 19626062 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 19626062 19626062 G A SNP TSSK6 ENST00000360913 human ensembl 74_37 -1 known nonsense c.175 p.R59* 0.714 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors TSSK6 HGNC ENSG00000178093 63 0 0 25 14 35.8974 PBX4 0 genome.wustl.edu 37 19 19681519 19681519 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 19681519 19681519 G A SNP PBX4 ENST00000251203 human ensembl 74_37 -1 known missense c.317 p.A106V 0.899 pfam_PBX pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors PBX4 HGNC ENSG00000105717 73 0 0 36 13 26.5306 ZNF737 0 genome.wustl.edu 37 19 20727685 20727685 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 20727685 20727685 T C SNP ZNF737 ENST00000427401 human ensembl 74_37 -1 known missense c.1324 p.T442A 0.001 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF737 HGNC ENSG00000237440 57 0 0 37 10 21.2766 ZNF737 0 genome.wustl.edu 37 19 20728103 20728103 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 20728103 20728103 C T SNP ZNF737 ENST00000427401 human ensembl 74_37 -1 known silent c.906 p.A302 0.004 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF737 HGNC ENSG00000237440 55 0 0 27 13 32.5 ZNF430 0 genome.wustl.edu 37 19 21239589 21239589 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 21239589 21239589 A G SNP ZNF430 ENST00000261560 human ensembl 74_37 +1 known missense c.475 p.K159E 0.002 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF430 HGNC ENSG00000118620 42 0 0 29 8 21.6216 LINGO3 0 genome.wustl.edu 37 19 2291560 2291560 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 2291560 2291560 G A SNP LINGO3 ENST00000404279 human ensembl 74_37 -1 known silent c.216 p.G72 0.786 NULL pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors LINGO3 HGNC ENSG00000220008 22 0 0 6 5 45.4545 ZNF675 0 genome.wustl.edu 37 19 23836085 23836085 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 23836085 23836085 G A SNP ZNF675 ENST00000359788 human ensembl 74_37 -1 known silent c.1650 p.N550 0.097 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF675 HGNC ENSG00000197372 51 0 0 42 3 6.66667 TLE2 0 genome.wustl.edu 37 19 3009702 3009702 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 3009702 3009702 T C SNP TLE2 ENST00000262953 human ensembl 74_37 -1 known splice_site c.1013-2 e13-2 0.969 - - - no_errors TLE2 HGNC ENSG00000065717 18 0 0 2 4 66.6667 ZNF536 0 genome.wustl.edu 37 19 31039638 31039638 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 31039638 31039638 A G SNP ZNF536 ENST00000355537 human ensembl 74_37 +1 known missense c.3112 p.T1038A 0.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF536 HGNC ENSG00000198597 92 0 0 45 11 19.6429 SLC7A10 0 genome.wustl.edu 37 19 33716477 33716477 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 33716477 33716477 C T SNP SLC7A10 ENST00000253188 human ensembl 74_37 -1 known missense c.133 p.A45T 1.000 pirsf_AA/rel_permease1 pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1 - no_errors SLC7A10 HGNC ENSG00000130876 40 0 0 15 9 37.5 TBXA2R 0 genome.wustl.edu 37 19 3600363 3600363 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 3600363 3600363 G A SNP TBXA2R ENST00000411851 human ensembl 74_37 -1 known silent c.270 p.A90 0.019 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thbox_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn - no_errors TBXA2R HGNC ENSG00000006638 52 0 0 25 9 26.4706 SBSN 0 genome.wustl.edu 37 19 36018974 36018974 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36018974 36018974 G A SNP SBSN ENST00000518157 human ensembl 74_37 -1 known silent c.210 p.N70 0.887 NULL NULL - no_errors SBSN HGNC ENSG00000189001 183 0 0 108 37 25.5172 KMT2B 0 genome.wustl.edu 37 19 36212356 36212356 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36212356 36212356 A G SNP KMT2B ENST00000222270 human ensembl 74_37 +1 known missense c.2107 p.S703G 1.000 pirsf_MeTrfase_trithorax pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC - no_errors KMT2B Uniprot_gn ENSG00000272333 46 0 0 13 2 13.3333 IGFLR1 0 genome.wustl.edu 37 19 36230389 36230389 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36230389 36230389 G A SNP IGFLR1 ENST00000246532 human ensembl 74_37 -1 known missense c.860 p.A287V 0.682 superfamily_DEATH-like_dom superfamily_DEATH-like_dom - no_errors IGFLR1 HGNC ENSG00000126246 68 0 0 38 13 25.4902 CLIP3 0 genome.wustl.edu 37 19 36515513 36515513 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36515513 36515513 C A SNP CLIP3 ENST00000360535 human ensembl 74_37 -1 known missense c.703 p.A235S 0.998 NULL pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain - no_errors CLIP3 HGNC ENSG00000105270 52 0 0 28 4 12.5 CLIP3 0 genome.wustl.edu 37 19 36518142 36518142 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36518142 36518142 C T SNP CLIP3 ENST00000360535 human ensembl 74_37 -1 known silent c.198 p.A66 0.933 NULL pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain - no_errors CLIP3 HGNC ENSG00000105270 58 0 0 37 15 28.8462 WDR62 0 genome.wustl.edu 37 19 36594454 36594454 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36594454 36594454 G A SNP WDR62 ENST00000401500 human ensembl 74_37 +1 known missense c.3724 p.V1242M 0.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR62 HGNC ENSG00000075702 51 0 0 31 5 13.8889 PIP5K1C 0 genome.wustl.edu 37 19 3667320 3667320 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 3667320 3667320 C A SNP PIP5K1C ENST00000537021 human ensembl 74_37 -1 known missense c.126 p.E42D 1.000 NULL pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub - no_errors PIP5K1C HGNC ENSG00000186111 37 0 0 12 2 14.2857 ZNF565 0 genome.wustl.edu 37 19 36673976 36673976 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36673976 36673976 G A SNP ZNF565 ENST00000304116 human ensembl 74_37 -1 known missense c.892 p.R298W 0.979 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF565 HGNC ENSG00000196357 86 0 0 49 21 30 ZNF146 0 genome.wustl.edu 37 19 36727929 36727929 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36727929 36727929 G A SNP ZNF146 ENST00000443387 human ensembl 74_37 +1 known missense c.587 p.R196Q 0.863 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF146 HGNC ENSG00000167635 140 0 0 70 27 27.8351 ZFR2 0 genome.wustl.edu 37 19 3823259 3823259 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 3823259 3823259 C T SNP ZFR2 ENST00000262961 human ensembl 74_37 -1 known silent c.1356 p.P452 0.297 NULL pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF - no_errors ZFR2 HGNC ENSG00000105278 169 0 0 82 35 29.9145 RYR1 0 genome.wustl.edu 37 19 38934390 38934390 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 38934390 38934390 G A SNP RYR1 ENST00000359596 human ensembl 74_37 +1 known missense c.378 p.M126I 1.000 pfam_Ins145_P3_rcpt,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif - no_errors RYR1 HGNC ENSG00000196218 142 0 0 84 29 25.6637 RYR1 0 genome.wustl.edu 37 19 39013867 39013867 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 39013867 39013867 G A SNP RYR1 ENST00000359596 human ensembl 74_37 +1 known missense c.10358 p.R3453H 1.000 NULL pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif - no_errors RYR1 HGNC ENSG00000196218 203 0 0 112 49 30.4348 NFKBIB 0 genome.wustl.edu 37 19 39399408 39399408 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 39399408 39399408 G A SNP NFKBIB ENST00000313582 human ensembl 74_37 +1 known missense c.1007 p.S336N 0.008 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors NFKBIB HGNC ENSG00000104825 193 0 0 89 51 36.4286 SARS2 0 genome.wustl.edu 37 19 39406730 39406730 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 39406730 39406730 G A SNP SARS2 ENST00000600042 human ensembl 74_37 -1 known missense c.1300 p.R434C 1.000 pirsf_Ser-tRNA-ligase_type_1,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1 pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1 - no_errors SARS2 HGNC ENSG00000104835 48 0 0 27 10 27.027 SARS2 0 genome.wustl.edu 37 19 39412274 39412274 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 39412274 39412274 G A SNP SARS2 ENST00000221431 human ensembl 74_37 -1 known missense c.427 p.R143W 1.000 pirsf_Ser-tRNA-ligase_type_1,superfamily_tRNA-bd_arm,tigrfam_Ser-tRNA-ligase_type_1 pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1 - no_errors SARS2 HGNC ENSG00000104835 43 0 0 25 10 28.5714 LRFN1 0 genome.wustl.edu 37 19 39804758 39804758 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 39804758 39804758 C T SNP LRFN1 ENST00000248668 human ensembl 74_37 -1 known missense c.1219 p.G407S 1.000 NULL pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors LRFN1 HGNC ENSG00000128011 28 0 0 14 5 26.3158 FBL 0 genome.wustl.edu 37 19 40331273 40331273 + Silent SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 40331273 40331273 T A SNP FBL ENST00000221801 human ensembl 74_37 -1 known silent c.165 p.G55 0.001 pirsf_Fibrillarin pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin - no_errors FBL HGNC ENSG00000105202 38 0 0 18 6 25 CNFN 0 genome.wustl.edu 37 19 42893100 42893100 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 42893100 42893100 G A SNP CNFN ENST00000222032 human ensembl 74_37 -1 known silent c.90 p.D30 1.000 pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich - no_errors CNFN HGNC ENSG00000105427 55 0 0 38 22 36.6667 PSG8 0 genome.wustl.edu 37 19 43259235 43259235 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 43259235 43259235 G T SNP PSG8 ENST00000306511 human ensembl 74_37 -1 known missense c.893 p.P298H 0.001 smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors PSG8 HGNC ENSG00000124467 141 0 0 76 19 20 CADM4 0 genome.wustl.edu 37 19 44130372 44130372 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 44130372 44130372 G A SNP CADM4 ENST00000222374 human ensembl 74_37 -1 known missense c.568 p.R190C 1.000 pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom - no_errors CADM4 HGNC ENSG00000105767 52 0 0 33 10 23.2558 ZNF155 0 genome.wustl.edu 37 19 44500737 44500737 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 44500737 44500737 G A SNP ZNF155 ENST00000270014 human ensembl 74_37 +1 known missense c.728 p.R243H 0.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF155 HGNC ENSG00000204920 211 0 0 84 51 37.7778 ZNF225 0 genome.wustl.edu 37 19 44636092 44636092 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 44636092 44636092 A G SNP ZNF225 ENST00000262894 human ensembl 74_37 +1 known missense c.1325 p.D442G 0.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF225 HGNC ENSG00000256294 82 0 0 69 5 6.75676 PLIN4 0 genome.wustl.edu 37 19 4511361 4511361 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 4511361 4511361 C T SNP PLIN4 ENST00000301286 human ensembl 74_37 -1 novel missense c.2569 p.G857S 0.121 NULL pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom - no_errors PLIN4 HGNC ENSG00000167676 156 1 0.636943 111 12 9.7561 MARK4 0 genome.wustl.edu 37 19 45766584 45766584 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 45766584 45766584 G A SNP MARK4 ENST00000262891 human ensembl 74_37 +1 known missense c.314 p.R105Q 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom - no_errors MARK4 HGNC ENSG00000007047 131 0 0 69 14 16.8675 RSPH6A 0 genome.wustl.edu 37 19 46308106 46308106 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 46308106 46308106 G A SNP RSPH6A ENST00000221538 human ensembl 74_37 -1 known missense c.1057 p.R353C 0.067 pfam_Radial_spoke pfam_Radial_spoke - no_errors RSPH6A HGNC ENSG00000104941 73 0 0 38 11 22.449 HIF3A 0 genome.wustl.edu 37 19 46815873 46815873 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 46815873 46815873 C A SNP HIF3A ENST00000377670 human ensembl 74_37 +1 known missense c.988 p.Q330K 1.000 pfam_PAS_fold_3,superfamily_PAS,smart_PAC pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS - no_errors HIF3A HGNC ENSG00000124440 167 0 0 82 27 24.7706 HIF3A 0 genome.wustl.edu 37 19 46832648 46832648 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 46832648 46832648 G A SNP HIF3A ENST00000377670 human ensembl 74_37 +1 known missense c.1625 p.R542H 1.000 NULL pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS - no_errors HIF3A HGNC ENSG00000124440 26 0 0 18 6 25 STRN4 0 genome.wustl.edu 37 19 47236446 47236446 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 47236446 47236446 G T SNP STRN4 ENST00000391910 human ensembl 74_37 -1 known missense c.587 p.S196Y 1.000 pfam_Striatin_N pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors STRN4 HGNC ENSG00000090372 39 0 0 25 8 24.2424 TICAM1 0 genome.wustl.edu 37 19 4818050 4818050 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 4818050 4818050 G A SNP TICAM1 ENST00000248244 human ensembl 74_37 -1 known missense c.340 p.R114W 0.013 pirsf_TICAM1 superfamily_TIR_dom,pirsf_TICAM1 - no_errors TICAM1 HGNC ENSG00000127666 65 0 0 32 16 33.3333 CARD8 0 genome.wustl.edu 37 19 48722193 48722193 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 48722193 48722193 G A SNP CARD8 ENST00000391898 human ensembl 74_37 -1 known missense c.1238 p.P413L 0.000 NULL pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD - no_errors CARD8 HGNC ENSG00000105483 102 0 0 47 32 40.5063 SPACA4 0 genome.wustl.edu 37 19 49110288 49110288 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 49110288 49110288 C T SNP SPACA4 ENST00000321762 human ensembl 74_37 +1 known missense c.53 p.T18M 0.000 NULL pfam_LY6_UPAR - no_errors SPACA4 HGNC ENSG00000177202 115 0 0 66 21 24.1379 TRPM4 0 genome.wustl.edu 37 19 49692270 49692270 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 49692270 49692270 G A SNP TRPM4 ENST00000252826 human ensembl 74_37 +1 known silent c.1941 p.P647 0.045 NULL pfam_Ion_trans_dom - no_errors TRPM4 HGNC ENSG00000130529 172 1 0.578035 78 28 26.4151 ALDH16A1 0 genome.wustl.edu 37 19 49971689 49971689 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 49971689 49971689 C T SNP ALDH16A1 ENST00000293350 human ensembl 74_37 +1 known silent c.1990 p.L664 0.932 pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH - no_errors ALDH16A1 HGNC ENSG00000161618 200 0 0 109 47 30.1282 NOSIP 0 genome.wustl.edu 37 19 50060481 50060481 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 50060481 50060481 C T SNP NOSIP ENST00000391853 human ensembl 74_37 -1 known missense c.284 p.R95Q 0.680 pirsf_Nitric_oxide_synth-interacting pirsf_Nitric_oxide_synth-interacting - no_errors NOSIP HGNC ENSG00000142546 8 0 0 4 3 42.8571 PRR12 0 genome.wustl.edu 37 19 50101061 50101061 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 50101061 50101061 C T SNP PRR12 ENST00000418929 human ensembl 74_37 +1 novel missense c.3469 p.R1157C 0.707 NULL NULL - no_errors PRR12 HGNC ENSG00000126464 18 0 0 6 7 53.8462 SIGLEC11 0 genome.wustl.edu 37 19 50463680 50463680 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 50463680 50463680 T C SNP SIGLEC11 ENST00000447370 human ensembl 74_37 -1 known splice_site c.461-2 e3-2 0.917 - - - no_errors SIGLEC11 HGNC ENSG00000161640 82 0 0 17 29 63.0435 KLK8 0 genome.wustl.edu 37 19 51503785 51503785 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 51503785 51503785 T C SNP KLK8 ENST00000391806 human ensembl 74_37 -1 known missense c.260 p.H87R 0.976 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors KLK8 HGNC ENSG00000129455 111 0 0 48 19 28.3582 KLK10 0 genome.wustl.edu 37 19 51519149 51519149 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 51519149 51519149 G A SNP KLK10 ENST00000309958 human ensembl 74_37 -1 known missense c.533 p.A178V 0.011 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors KLK10 HGNC ENSG00000129451 10 0 0 7 2 22.2222 ZNF528 0 genome.wustl.edu 37 19 52918821 52918821 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 52918821 52918821 A T SNP ZNF528 ENST00000360465 human ensembl 74_37 +1 known missense c.716 p.K239M 0.998 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF528 HGNC ENSG00000167555 54 0 0 34 7 17.0732 ZNF702P 0 genome.wustl.edu 37 19 53473579 53473579 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 53473579 53473579 G A SNP ZNF702P ENST00000270443 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors ZNF702P HGNC ENSG00000242779 63 0 0 27 8 22.8571 MIR518A1 0 genome.wustl.edu 37 19 54234335 54234335 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 54234335 54234335 C T SNP MIR518A1 ENST00000385068 human ensembl 74_37 +1 known rna NULL NULL 0.003 - - - no_errors MIR518A1 HGNC ENSG00000207803 55 0 0 27 7 20.5882 MYADM 0 genome.wustl.edu 37 19 54377015 54377015 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 54377015 54377015 G A SNP MYADM ENST00000336967 human ensembl 74_37 +1 known missense c.232 p.V78M 0.350 pfam_Marvel pfam_Marvel - no_errors MYADM HGNC ENSG00000179820 130 1 0.763359 51 17 25 PRKCG 0 genome.wustl.edu 37 19 54394974 54394974 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 54394974 54394974 T C SNP PRKCG ENST00000540413 human ensembl 74_37 +1 known silent c.576 p.S192 0.954 pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Protein_kinase_C_a/b/g,prints_C2_dom,pfscan_C2_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom - no_errors PRKCG HGNC ENSG00000126583 144 0 0 72 35 32.7103 LENG1 0 genome.wustl.edu 37 19 54659493 54659493 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 54659493 54659493 C T SNP LENG1 ENST00000222224 human ensembl 74_37 -1 known missense c.761 p.R254H 0.988 NULL NULL - no_errors LENG1 HGNC ENSG00000105617 20 0 0 13 5 27.7778 LILRB4 0 genome.wustl.edu 37 19 55177373 55177373 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 55177373 55177373 A G SNP LILRB4 ENST00000270452 human ensembl 74_37 +1 known missense c.865 p.R289G 0.001 NULL pfam_Immunoglobulin,pfscan_Ig-like_dom - no_errors LILRB4 HGNC ENSG00000186818 73 0 0 31 12 27.907 NCR1 0 genome.wustl.edu 37 19 55417575 55417575 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 55417575 55417575 C T SNP NCR1 ENST00000291890 human ensembl 74_37 +1 known silent c.30 p.C10 0.100 NULL smart_Ig_sub - no_errors NCR1 HGNC ENSG00000189430 149 0 0 100 41 29.078 PPP1R12C 0 genome.wustl.edu 37 19 55614811 55614811 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 55614811 55614811 C T SNP PPP1R12C ENST00000263433 human ensembl 74_37 -1 known missense c.697 p.V233M 1.000 pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors PPP1R12C HGNC ENSG00000125503 85 0 0 35 12 25.5319 TNNI3 0 genome.wustl.edu 37 19 55668652 55668652 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 55668652 55668652 C T SNP TNNI3 ENST00000590463 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors TNNI3 HGNC ENSG00000129991 19 0 0 18 4 18.1818 SYT5 0 genome.wustl.edu 37 19 55687120 55687120 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 55687120 55687120 C T SNP SYT5 ENST00000354308 human ensembl 74_37 -1 known missense c.497 p.R166Q 1.000 pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom - no_errors SYT5 HGNC ENSG00000129990 87 0 0 41 16 28.0702 SAFB2 0 genome.wustl.edu 37 19 5587937 5587937 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5587937 5587937 G A SNP SAFB2 ENST00000252542 human ensembl 74_37 -1 known silent c.2580 p.R860 0.000 NULL pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom - no_errors SAFB2 HGNC ENSG00000130254 25 0 0 15 7 31.8182 SAFB2 0 genome.wustl.edu 37 19 5587943 5587943 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5587943 5587943 C T SNP SAFB2 ENST00000252542 human ensembl 74_37 -1 known silent c.2574 p.Q858 0.007 NULL pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom - no_errors SAFB2 HGNC ENSG00000130254 30 0 0 12 11 47.8261 NLRP8 0 genome.wustl.edu 37 19 56465979 56465979 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 56465979 56465979 C T SNP NLRP8 ENST00000291971 human ensembl 74_37 +1 known silent c.555 p.H185 0.000 superfamily_P-loop_NTPase pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN - no_errors NLRP8 HGNC ENSG00000179709 90 0 0 54 15 21.7391 NLRP5 0 genome.wustl.edu 37 19 56565126 56565126 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 56565126 56565126 C T SNP NLRP5 ENST00000390649 human ensembl 74_37 +1 known missense c.3251 p.A1084V 0.000 smart_Leu-rich_rpt_RNase_inh_sub-typ pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN - no_errors NLRP5 HGNC ENSG00000171487 103 0 0 56 23 29.1139 ZNF787 0 genome.wustl.edu 37 19 56600436 56600436 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 56600436 56600436 G A SNP ZNF787 ENST00000270459 human ensembl 74_37 -1 known silent c.105 p.D35 0.830 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF787 HGNC ENSG00000142409 14 0 0 4 3 42.8571 LONP1 0 genome.wustl.edu 37 19 5707144 5707144 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5707144 5707144 C T SNP LONP1 ENST00000360614 human ensembl 74_37 -1 known missense c.1073 p.R358Q 1.000 pfam_Pept_S16_N,smart_Pept_S16_N,tigrfam_Lon_bac/euk-typ pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ - no_errors LONP1 HGNC ENSG00000196365 45 0 0 14 2 12.5 ZNF211 0 genome.wustl.edu 37 19 58152086 58152086 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 58152086 58152086 G A SNP ZNF211 ENST00000240731 human ensembl 74_37 +1 known missense c.271 p.V91M 0.001 superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF211 HGNC ENSG00000121417 65 0 0 23 16 41.0256 FUT6 0 genome.wustl.edu 37 19 5831827 5831827 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5831827 5831827 T C SNP FUT6 ENST00000592563 human ensembl 74_37 -1 known missense c.752 p.H251R 0.981 pfam_Glyco_trans_10 pfam_Glyco_trans_10 - no_errors FUT6 HGNC ENSG00000156413 88 0 0 58 14 19.4444 FUT3 0 genome.wustl.edu 37 19 5844584 5844584 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5844584 5844584 G A SNP FUT3 ENST00000303225 human ensembl 74_37 -1 known silent c.267 p.A89 0.079 pfam_Glyco_trans_10 pfam_Glyco_trans_10 - no_errors FUT3 HGNC ENSG00000171124 252 0 0 153 48 23.8806 TUBB4A 0 genome.wustl.edu 37 19 6495655 6495655 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 6495655 6495655 C T SNP TUBB4A ENST00000264071 human ensembl 74_37 -1 known silent c.855 p.T285 0.981 pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin - no_errors TUBB4A HGNC ENSG00000104833 119 0 0 52 23 30.6667 TNFSF14 0 genome.wustl.edu 37 19 6669903 6669903 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 6669903 6669903 G A SNP TNFSF14 ENST00000599359 human ensembl 74_37 -1 known nonsense c.178 p.Q60* 0.001 NULL pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF - no_errors TNFSF14 HGNC ENSG00000125735 157 0 0 83 30 26.5487 VAV1 0 genome.wustl.edu 37 19 6821668 6821668 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 6821668 6821668 G A SNP VAV1 ENST00000602142 human ensembl 74_37 +1 known silent c.357 p.P119 0.000 superfamily_CH-domain,pfscan_CH-domain pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin - no_errors VAV1 HGNC ENSG00000141968 99 0 0 85 16 15.8416 ZNF358 0 genome.wustl.edu 37 19 7584410 7584410 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 7584410 7584410 C T SNP ZNF358 ENST00000394341 human ensembl 74_37 +1 known silent c.282 p.L94 0.009 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF358 HGNC ENSG00000198816 195 0 0 99 51 34 ADAMTS10 0 genome.wustl.edu 37 19 8656953 8656953 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 8656953 8656953 G A SNP ADAMTS10 ENST00000270328 human ensembl 74_37 -1 known missense c.1622 p.S541L 0.922 NULL pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS10 HGNC ENSG00000142303 80 0 0 43 9 17.3077 ADAMTS10 0 genome.wustl.edu 37 19 8668665 8668665 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 8668665 8668665 T C SNP ADAMTS10 ENST00000270328 human ensembl 74_37 -1 known missense c.539 p.Y180C 1.000 pfam_Peptidase_M12B_N pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS10 HGNC ENSG00000142303 49 0 0 29 11 27.5 ACTL9 0 genome.wustl.edu 37 19 8807972 8807972 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 8807972 8807972 G A SNP ACTL9 ENST00000324436 human ensembl 74_37 -1 known silent c.1080 p.R360 0.000 pfam_Actin-related,smart_Actin-related pfam_Actin-related,smart_Actin-related,prints_Actin-related - no_errors ACTL9 HGNC ENSG00000181786 27 0 0 9 8 47.0588 MUC16 0 genome.wustl.edu 37 19 9000147 9000147 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 9000147 9000147 C A SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known missense c.40610 p.R13537M 0.997 pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom - no_errors MUC16 HGNC ENSG00000181143 116 0 0 56 19 25.3333 MUC16 0 genome.wustl.edu 37 19 9089934 9089934 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 9089934 9089934 G A SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known silent c.1881 p.L627 0.000 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom - no_errors MUC16 HGNC ENSG00000181143 85 0 0 76 4 5 MFSD9 0 genome.wustl.edu 37 2 103340288 103340288 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 103340288 103340288 C T SNP MFSD9 ENST00000258436 human ensembl 74_37 -1 known missense c.508 p.G170R 1.000 pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG - no_errors MFSD9 HGNC ENSG00000135953 78 0 0 47 17 26.5625 TGFBRAP1 0 genome.wustl.edu 37 2 105885907 105885907 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 105885907 105885907 C T SNP TGFBRAP1 ENST00000258449 human ensembl 74_37 -1 known missense c.2228 p.R743H 0.679 pfam_VPS39/TGF_beta_rcpt-assoc_2 pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron - no_errors TGFBRAP1 HGNC ENSG00000135966 43 0 0 20 8 28.5714 SULT1C3 0 genome.wustl.edu 37 2 108863670 108863670 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 108863670 108863670 A G SNP SULT1C3 ENST00000329106 human ensembl 74_37 +1 known missense c.20 p.N7S 0.003 NULL pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase - no_errors SULT1C3 HGNC ENSG00000196228 45 0 0 28 7 20 CCDC138 0 genome.wustl.edu 37 2 109405348 109405348 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 109405348 109405348 G A SNP CCDC138 ENST00000447782 human ensembl 74_37 +1 known missense c.134 p.R45H 0.006 NULL NULL - no_errors CCDC138 HGNC ENSG00000163006 123 0 0 72 21 22.5806 ACOXL 0 genome.wustl.edu 37 2 111789258 111789258 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 111789258 111789258 G A SNP ACOXL ENST00000439055 human ensembl 74_37 +1 known missense c.1336 p.V446M 0.002 pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase - no_errors ACOXL HGNC ENSG00000153093 109 0 0 62 18 22.5 MERTK 0 genome.wustl.edu 37 2 112733042 112733042 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 112733042 112733042 T C SNP MERTK ENST00000295408 human ensembl 74_37 +1 known silent c.1137 p.T379 0.006 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors MERTK HGNC ENSG00000153208 89 0 0 51 18 26.087 ZC3H6 0 genome.wustl.edu 37 2 113089407 113089407 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 113089407 113089407 C A SNP ZC3H6 ENST00000343936 human ensembl 74_37 +1 known missense c.2912 p.P971H 1.000 NULL pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZC3H6 HGNC ENSG00000188177 34 0 0 17 6 26.087 RPL23AP7 0 genome.wustl.edu 37 2 114369758 114369758 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 114369758 114369758 C T SNP RPL23AP7 ENST00000391616 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors RPL23AP7 HGNC ENSG00000240356 79 0 0 37 7 15.9091 DPP10 0 genome.wustl.edu 37 2 116534834 116534834 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 116534834 116534834 A G SNP DPP10 ENST00000393147 human ensembl 74_37 +1 known silent c.1284 p.E428 1.000 pfam_Peptidase_S9B pfam_Peptidase_S9B,pfam_Peptidase_S9 - no_errors DPP10 HGNC ENSG00000175497 57 0 0 45 3 6.25 PTPN4 0 genome.wustl.edu 37 2 120692467 120692467 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 120692467 120692467 G A SNP PTPN4 ENST00000263708 human ensembl 74_37 +1 known missense c.1288 p.E430K 1.000 pirsf_Tyr_Pase_non-rcpt_typ-3/4 pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like - no_errors PTPN4 HGNC ENSG00000088179 75 0 0 49 19 27.9412 GLI2 0 genome.wustl.edu 37 2 121743872 121743872 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 121743872 121743872 G A SNP GLI2 ENST00000361492 human ensembl 74_37 +1 known missense c.1975 p.G659R 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI2 HGNC ENSG00000074047 59 0 0 35 16 31.3725 GLI2 0 genome.wustl.edu 37 2 121746554 121746554 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 121746554 121746554 G A SNP GLI2 ENST00000361492 human ensembl 74_37 +1 known missense c.3064 p.G1022S 0.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI2 HGNC ENSG00000074047 19 0 0 5 4 44.4444 CLASP1 0 genome.wustl.edu 37 2 122154732 122154732 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 122154732 122154732 C T SNP CLASP1 ENST00000263710 human ensembl 74_37 -1 known missense c.3107 p.S1036N 1.000 superfamily_ARM-type_fold pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2 - no_errors CLASP1 HGNC ENSG00000074054 49 0 0 25 4 13.7931 FAM168B 0 genome.wustl.edu 37 2 131810509 131810509 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 131810509 131810509 C T SNP FAM168B ENST00000389915 human ensembl 74_37 -1 known silent c.555 p.T185 0.308 NULL NULL - no_errors FAM168B HGNC ENSG00000152102 9 0 0 2 2 50 NCKAP5 0 genome.wustl.edu 37 2 133489555 133489555 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 133489555 133489555 C T SNP NCKAP5 ENST00000317721 human ensembl 74_37 -1 known missense c.5198 p.R1733H 0.993 NULL NULL - no_errors NCKAP5 HGNC ENSG00000176771 43 0 0 24 8 25 NCKAP5 0 genome.wustl.edu 37 2 133542365 133542365 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 133542365 133542365 C T SNP NCKAP5 ENST00000317721 human ensembl 74_37 -1 known silent c.2019 p.A673 0.037 NULL NULL - no_errors NCKAP5 HGNC ENSG00000176771 106 0 0 45 19 29.6875 R3HDM1 0 genome.wustl.edu 37 2 136399348 136399348 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 136399348 136399348 A G SNP R3HDM1 ENST00000264160 human ensembl 74_37 +1 known missense c.1462 p.N488D 1.000 NULL pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd - no_errors R3HDM1 HGNC ENSG00000048991 43 0 0 28 6 17.6471 LCT 0 genome.wustl.edu 37 2 136567157 136567157 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 136567157 136567157 G A SNP LCT ENST00000264162 human ensembl 74_37 -1 known silent c.2760 p.G920 0.992 pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1 - no_errors LCT HGNC ENSG00000115850 58 0 0 23 17 42.5 LRP1B 0 genome.wustl.edu 37 2 141299356 141299356 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 141299356 141299356 G A SNP LRP1B ENST00000389484 human ensembl 74_37 -1 known missense c.7379 p.T2460I 1.000 NULL pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP1B HGNC ENSG00000168702 146 0 0 82 33 28.6957 LRP1B 0 genome.wustl.edu 37 2 141680553 141680553 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 141680553 141680553 C T SNP LRP1B ENST00000389484 human ensembl 74_37 -1 known silent c.3300 p.K1100 1.000 pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP1B HGNC ENSG00000168702 87 0 0 65 13 16.6667 FMNL2 0 genome.wustl.edu 37 2 153471485 153471485 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 153471485 153471485 G A SNP FMNL2 ENST00000288670 human ensembl 74_37 +1 known missense c.1183 p.V395M 1.000 pfam_FH3_dom,superfamily_ARM-type_fold pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour - no_errors FMNL2 HGNC ENSG00000157827 81 0 0 34 10 22.7273 NBAS 0 genome.wustl.edu 37 2 15694199 15694199 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 15694199 15694199 A G SNP NBAS ENST00000281513 human ensembl 74_37 -1 known silent c.273 p.H91 1.000 superfamily_Quino_amine_DH_bsu pfam_Sec39,superfamily_Quino_amine_DH_bsu - no_errors NBAS HGNC ENSG00000151779 47 0 0 25 3 10.7143 CYTIP 0 genome.wustl.edu 37 2 158300372 158300372 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 158300372 158300372 C A SNP CYTIP ENST00000264192 human ensembl 74_37 -1 known missense c.161 p.R54L 1.000 superfamily_PDZ pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors CYTIP HGNC ENSG00000115165 123 0 0 65 26 28.5714 LY75 0 genome.wustl.edu 37 2 160750520 160750520 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 160750520 160750520 T C SNP LY75 ENST00000554112 human ensembl 74_37 -1 known missense c.542 p.H181R 1.000 pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin - no_errors LY75 HGNC ENSG00000054219 74 0 0 41 27 39.7059 SLC4A10 0 genome.wustl.edu 37 2 162711564 162711564 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 162711564 162711564 G T SNP SLC4A10 ENST00000446997 human ensembl 74_37 +1 known missense c.501 p.L167F 1.000 pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk - no_errors SLC4A10 HGNC ENSG00000144290 48 0 0 33 8 19.5122 PXDN 0 genome.wustl.edu 37 2 1639246 1639246 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 1639246 1639246 G A SNP PXDN ENST00000252804 human ensembl 74_37 -1 known silent c.4254 p.A1418 0.000 pfam_VWF_C,smart_VWF_C,pfscan_VWF_C pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom - no_errors PXDN HGNC ENSG00000130508 17 0 0 5 4 44.4444 CSRNP3 0 genome.wustl.edu 37 2 166535528 166535528 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 166535528 166535528 G T SNP CSRNP3 ENST00000314499 human ensembl 74_37 +1 known missense c.1023 p.E341D 0.747 NULL prints_Cys/Ser-rich_nuc_prot - no_errors CSRNP3 HGNC ENSG00000178662 124 0 0 79 20 20.202 SCN1A 0 genome.wustl.edu 37 2 166911252 166911252 + Silent SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 166911252 166911252 A C SNP SCN1A ENST00000303395 human ensembl 74_37 -1 known silent c.498 p.T166 0.891 pfam_Ion_trans_dom pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN1A HGNC ENSG00000144285 25 0 0 17 4 19.0476 SCN9A 0 genome.wustl.edu 37 2 167055217 167055217 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 167055217 167055217 C G SNP SCN9A ENST00000303354 human ensembl 74_37 -1 known missense c.5935 p.D1979H 1.000 NULL pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN9A HGNC ENSG00000169432 16 0 0 12 4 25 LRP2 0 genome.wustl.edu 37 2 170060632 170060632 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 170060632 170060632 T C SNP LRP2 ENST00000263816 human ensembl 74_37 -1 known missense c.7865 p.D2622G 1.000 smart_LDLR_classB_rpt pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP2 HGNC ENSG00000081479 245 0 0 187 45 19.3966 EVX2 0 genome.wustl.edu 37 2 176947040 176947040 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 176947040 176947040 G A SNP EVX2 ENST00000308618 human ensembl 74_37 -1 known missense c.565 p.R189W 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa - no_errors EVX2 HGNC ENSG00000174279 18 0 0 11 4 26.6667 SMC6 0 genome.wustl.edu 37 2 17877642 17877642 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 17877642 17877642 G A SNP SMC6 ENST00000381272 human ensembl 74_37 -1 known nonsense c.2524 p.R842* 0.329 superfamily_P-loop_NTPase superfamily_P-loop_NTPase - no_errors SMC6 HGNC ENSG00000163029 41 0 0 17 9 34.6154 TTN 0 genome.wustl.edu 37 2 179398049 179398049 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 179398049 179398049 C A SNP TTN ENST00000342992 human ensembl 74_37 -1 known silent c.95589 p.T31863 0.174 pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 64 0 0 37 14 27.451 TTN 0 genome.wustl.edu 37 2 179400960 179400960 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 179400960 179400960 A G SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.92810 p.L30937P 1.000 pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 20 0 0 14 5 26.3158 GEN1 0 genome.wustl.edu 37 2 17946245 17946245 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 17946245 17946245 G A SNP GEN1 ENST00000317402 human ensembl 74_37 +1 known missense c.430 p.A144T 1.000 pfam_XPG-I_dom,smart_XPG-I_dom,prints_XPG/Rad2 pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2 - no_errors GEN1 HGNC ENSG00000178295 106 0 0 53 14 20.8955 TTN 0 genome.wustl.edu 37 2 179479424 179479424 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 179479424 179479424 C A SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.41113 p.G13705W 1.000 pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 35 0 0 20 4 16.6667 TTN 0 genome.wustl.edu 37 2 179499476 179499476 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 179499476 179499476 A G SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.34421 p.I11474T 0.680 superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 126 0 0 80 31 27.9279 SESTD1 0 genome.wustl.edu 37 2 179982318 179982318 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 179982318 179982318 G A SNP SESTD1 ENST00000428443 human ensembl 74_37 -1 known nonsense c.1465 p.R489* 1.000 NULL superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom - no_errors SESTD1 HGNC ENSG00000187231 94 0 0 53 16 23.1884 NEUROD1 0 genome.wustl.edu 37 2 182543295 182543295 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 182543295 182543295 C T SNP NEUROD1 ENST00000295108 human ensembl 74_37 -1 known missense c.293 p.R98H 1.000 pirsf_TF_bHLH_NeuroD pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom - no_errors NEUROD1 HGNC ENSG00000162992 37 0 0 15 8 34.7826 FSIP2 0 genome.wustl.edu 37 2 186671708 186671708 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 186671708 186671708 C A SNP FSIP2 ENST00000343098 human ensembl 74_37 +1 known missense c.17942 p.P5981H 0.001 NULL NULL - no_errors FSIP2 HGNC ENSG00000188738 40 0 0 27 5 15.625 ANKAR 0 genome.wustl.edu 37 2 190606165 190606165 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 190606165 190606165 G A SNP ANKAR ENST00000313581 human ensembl 74_37 +1 known silent c.3798 p.S1266 0.001 superfamily_ARM-type_fold,smart_Armadillo pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo - no_errors ANKAR HGNC ENSG00000151687 73 0 0 29 14 32.5581 PMS1 0 genome.wustl.edu 37 2 190732629 190732629 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 190732629 190732629 A G SNP PMS1 ENST00000441310 human ensembl 74_37 +1 known missense c.2447 p.N816S 1.000 NULL pfam_DNA_mismatch_repair_C,pfam_HMG_box_dom,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,tigrfam_DNA_mismatch_repair_N - no_errors PMS1 HGNC ENSG00000064933 101 0 0 45 8 15.0943 MFSD6 0 genome.wustl.edu 37 2 191301592 191301592 + Nonsense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 191301592 191301592 T G SNP MFSD6 ENST00000281416 human ensembl 74_37 +1 known nonsense c.837 p.Y279* 1.000 superfamily_MFS_dom_general_subst_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt - no_errors MFSD6 HGNC ENSG00000151690 191 0 0 102 37 26.6187 STAT4 0 genome.wustl.edu 37 2 191898232 191898232 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 191898232 191898232 C A SNP STAT4 ENST00000358470 human ensembl 74_37 -1 known silent c.1836 p.V612 1.000 pfam_SH2,pfscan_SH2 pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2 - no_errors STAT4 HGNC ENSG00000138378 37 0 0 27 3 10 SF3B1 0 genome.wustl.edu 37 2 198257723 198257723 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 198257723 198257723 T C SNP SF3B1 ENST00000335508 human ensembl 74_37 -1 known silent c.3729 p.P1243 0.979 superfamily_ARM-type_fold pfam_SF3b_su1,superfamily_ARM-type_fold - no_errors SF3B1 HGNC ENSG00000115524 57 0 0 46 10 17.8571 SF3B1 0 genome.wustl.edu 37 2 198268475 198268475 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 198268475 198268475 T C SNP SF3B1 ENST00000335508 human ensembl 74_37 -1 known missense c.1553 p.Q518R 1.000 superfamily_ARM-type_fold pfam_SF3b_su1,superfamily_ARM-type_fold - no_errors SF3B1 HGNC ENSG00000115524 33 0 0 13 5 27.7778 SATB2 0 genome.wustl.edu 37 2 200298107 200298107 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 200298107 200298107 C T SNP SATB2 ENST00000260926 human ensembl 74_37 -1 known silent c.300 p.A100 0.925 NULL pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT - no_errors SATB2 HGNC ENSG00000119042 71 0 0 34 13 27.6596 FAM126B 0 genome.wustl.edu 37 2 201857667 201857667 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 201857667 201857667 C T SNP FAM126B ENST00000418596 human ensembl 74_37 -1 known missense c.686 p.R229Q 1.000 pfam_Hyccin pfam_Hyccin - no_errors FAM126B HGNC ENSG00000155744 60 0 0 38 8 17.3913 CASP10 0 genome.wustl.edu 37 2 202082435 202082435 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202082435 202082435 C A SNP CASP10 ENST00000286186 human ensembl 74_37 +1 known missense c.1540 p.P514T 1.000 smart_Pept_C14A_p45_core pfam_Pept_C14_caspase,pfam_DED,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,prints_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20 - no_errors CASP10 HGNC ENSG00000003400 148 1 0.671141 94 32 25.3968 TMEM237 0 genome.wustl.edu 37 2 202494478 202494478 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202494478 202494478 C T SNP TMEM237 ENST00000409883 human ensembl 74_37 -1 known silent c.651 p.V217 0.886 NULL NULL - no_errors TMEM237 HGNC ENSG00000155755 80 0 0 44 14 24.1379 ALS2 0 genome.wustl.edu 37 2 202569184 202569184 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202569184 202569184 G A SNP ALS2 ENST00000264276 human ensembl 74_37 -1 known missense c.4831 p.R1611W 1.000 pfam_VPS9,pfscan_VPS9 pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens - no_errors ALS2 HGNC ENSG00000003393 37 0 0 18 7 28 CDK15 0 genome.wustl.edu 37 2 202755581 202755581 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202755581 202755581 A G SNP CDK15 ENST00000374598 human ensembl 74_37 +1 known silent c.1272 p.K424 0.495 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors CDK15 HGNC ENSG00000138395 53 0 0 23 7 23.3333 FZD7 0 genome.wustl.edu 37 2 202899487 202899487 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202899487 202899487 G T SNP FZD7 ENST00000286201 human ensembl 74_37 +1 known missense c.117 p.K39N 1.000 NULL pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled - no_errors FZD7 HGNC ENSG00000155760 81 0 0 47 17 26.5625 BMPR2 0 genome.wustl.edu 37 2 203384850 203384850 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 203384850 203384850 G A SNP BMPR2 ENST00000374580 human ensembl 74_37 +1 known nonsense c.893 p.W298* 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors BMPR2 HGNC ENSG00000204217 56 0 0 26 10 27.7778 KANSL1L 0 genome.wustl.edu 37 2 210993825 210993825 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 210993825 210993825 G A SNP KANSL1L ENST00000281772 human ensembl 74_37 -1 known missense c.1160 p.A387V 1.000 NULL NULL - no_errors KANSL1L HGNC ENSG00000144445 120 0 0 67 35 34.3137 APOB 0 genome.wustl.edu 37 2 21227276 21227276 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 21227276 21227276 G A SNP APOB ENST00000233242 human ensembl 74_37 -1 known silent c.11952 p.T3984 0.058 NULL pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N - no_errors APOB HGNC ENSG00000084674 83 0 0 52 13 20 APOB 0 genome.wustl.edu 37 2 21260067 21260067 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 21260067 21260067 C A SNP APOB ENST00000233242 human ensembl 74_37 -1 known missense c.598 p.A200S 0.274 pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N - no_errors APOB HGNC ENSG00000084674 42 0 0 31 6 16.2162 STK36 0 genome.wustl.edu 37 2 219558685 219558685 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 219558685 219558685 G A SNP STK36 ENST00000295709 human ensembl 74_37 +1 known missense c.2315 p.R772Q 0.987 superfamily_ARM-type_fold pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors STK36 HGNC ENSG00000163482 82 0 0 42 18 30 WNT6 0 genome.wustl.edu 37 2 219736402 219736402 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 219736402 219736402 C T SNP WNT6 ENST00000233948 human ensembl 74_37 +1 known missense c.497 p.A166V 1.000 pfam_Wnt,smart_Wnt,prints_Wnt6 pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6 - no_errors WNT6 HGNC ENSG00000115596 16 0 0 8 4 33.3333 CCDC108 0 genome.wustl.edu 37 2 219895916 219895916 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 219895916 219895916 G T SNP CCDC108 ENST00000341552 human ensembl 74_37 -1 known silent c.927 p.P309 0.001 superfamily_PapD-like superfamily_PapD-like,pfscan_MSP_dom - no_errors CCDC108 HGNC ENSG00000181378 33 0 0 9 4 30.7692 ANKZF1 0 genome.wustl.edu 37 2 220098595 220098595 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220098595 220098595 C T SNP ANKZF1 ENST00000323348 human ensembl 74_37 +1 known silent c.978 p.L326 0.619 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKZF1 HGNC ENSG00000163516 76 0 0 41 14 25.4545 PTPRN 0 genome.wustl.edu 37 2 220162723 220162723 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220162723 220162723 G A SNP PTPRN ENST00000295718 human ensembl 74_37 -1 known silent c.1771 p.L591 0.993 NULL pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRN HGNC ENSG00000054356 66 0 0 26 7 21.2121 PTPRN 0 genome.wustl.edu 37 2 220166399 220166399 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220166399 220166399 C A SNP PTPRN ENST00000295718 human ensembl 74_37 -1 known missense c.1037 p.G346V 0.971 NULL pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRN HGNC ENSG00000054356 47 0 0 20 7 25.9259 GMPPA 0 genome.wustl.edu 37 2 220371072 220371072 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220371072 220371072 G A SNP GMPPA ENST00000313597 human ensembl 74_37 +1 known missense c.1090 p.D364N 1.000 NULL pfam_NTP_transferase - no_errors GMPPA HGNC ENSG00000144591 93 0 0 25 10 28.5714 ASIC4 0 genome.wustl.edu 37 2 220379398 220379398 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220379398 220379398 G A SNP ASIC4 ENST00000347842 human ensembl 74_37 +1 known silent c.333 p.R111 0.995 NULL pfam_Na+channel_ASC,prints_Na+channel_ASC - no_errors ASIC4 HGNC ENSG00000072182 37 0 0 17 7 29.1667 OBSL1 0 genome.wustl.edu 37 2 220432935 220432935 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220432935 220432935 C T SNP OBSL1 ENST00000404537 human ensembl 74_37 -1 known missense c.1124 p.R375H 0.997 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors OBSL1 HGNC ENSG00000124006 42 0 0 12 8 40 NYAP2 0 genome.wustl.edu 37 2 226447270 226447270 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 226447270 226447270 G A SNP NYAP2 ENST00000272907 human ensembl 74_37 +1 known silent c.1137 p.S379 0.005 NULL NULL - no_errors NYAP2 HGNC ENSG00000144460 24 0 0 11 4 26.6667 COL4A3 0 genome.wustl.edu 37 2 228128641 228128641 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 228128641 228128641 G A SNP COL4A3 ENST00000396578 human ensembl 74_37 +1 known silent c.1296 p.P432 0.302 pfam_Collagen pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC - no_errors COL4A3 HGNC ENSG00000169031 91 0 0 35 22 38.5965 TRIP12 0 genome.wustl.edu 37 2 230659897 230659897 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 230659897 230659897 G A SNP TRIP12 ENST00000283943 human ensembl 74_37 -1 known silent c.3741 p.G1247 1.000 NULL pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom - no_errors TRIP12 HGNC ENSG00000153827 92 0 0 79 18 18.5567 TRIP12 0 genome.wustl.edu 37 2 230673018 230673018 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 230673018 230673018 A T SNP TRIP12 ENST00000283943 human ensembl 74_37 -1 known missense c.2145 p.D715E 0.989 superfamily_ARM-type_fold pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom - no_errors TRIP12 HGNC ENSG00000153827 99 0 0 54 20 27.027 SLC16A14 0 genome.wustl.edu 37 2 230911029 230911029 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 230911029 230911029 G A SNP SLC16A14 ENST00000295190 human ensembl 74_37 -1 known silent c.813 p.A271 0.000 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC16A14 HGNC ENSG00000163053 146 0 0 85 33 27.9661 ALPP 0 genome.wustl.edu 37 2 233246071 233246071 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 233246071 233246071 G A SNP ALPP ENST00000392027 human ensembl 74_37 +1 known missense c.1303 p.E435K 0.000 pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase - no_errors ALPP HGNC ENSG00000163283 88 0 0 42 6 12.5 INPP5D 0 genome.wustl.edu 37 2 234093159 234093159 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 234093159 234093159 G A SNP INPP5D ENST00000359570 human ensembl 74_37 +1 known missense c.2231 p.C744Y 1.000 NULL pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2 - no_errors INPP5D HGNC ENSG00000168918 44 0 0 22 2 8.33333 UGT1A5 0 genome.wustl.edu 37 2 234622109 234622109 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 234622109 234622109 G A SNP UGT1A5 ENST00000373414 human ensembl 74_37 +1 known missense c.472 p.A158T 1.000 pfam_UDP_glucos_trans pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C - no_errors UGT1A5 HGNC ENSG00000240224 233 0 0 105 67 38.9535 ARL4C 0 genome.wustl.edu 37 2 235404797 235404797 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 235404797 235404797 G A SNP ARL4C ENST00000339728 human ensembl 74_37 -1 known missense c.434 p.A145V 1.000 pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors ARL4C HGNC ENSG00000188042 42 0 0 33 8 19.5122 AGAP1 0 genome.wustl.edu 37 2 236706491 236706491 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 236706491 236706491 C T SNP AGAP1 ENST00000304032 human ensembl 74_37 +1 known silent c.762 p.S254 0.419 NULL pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase - no_errors AGAP1 HGNC ENSG00000157985 283 0 0 145 33 18.5393 LRRFIP1 0 genome.wustl.edu 37 2 238672491 238672491 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 238672491 238672491 A G SNP LRRFIP1 ENST00000392000 human ensembl 74_37 +1 known missense c.2135 p.Q712R 0.000 NULL pfam_Leu-rich_rep_flightless-int_pr - no_errors LRRFIP1 HGNC ENSG00000124831 51 0 0 44 8 15.3846 TRAF3IP1 0 genome.wustl.edu 37 2 239234487 239234487 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 239234487 239234487 T C SNP TRAF3IP1 ENST00000373327 human ensembl 74_37 +1 known missense c.230 p.I77T 1.000 NULL NULL - no_errors TRAF3IP1 HGNC ENSG00000204104 80 0 0 56 5 8.19672 PRR21 0 genome.wustl.edu 37 2 240981360 240981360 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 240981360 240981360 C T SNP PRR21 ENST00000408934 human ensembl 74_37 -1 known missense c.1040 p.R347H 0.004 NULL NULL - no_errors PRR21 HGNC ENSG00000221961 108 0 0 58 5 7.93651 PRR21 0 genome.wustl.edu 37 2 240982089 240982089 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 240982089 240982089 G A SNP PRR21 ENST00000408934 human ensembl 74_37 -1 known missense c.311 p.T104M 0.000 NULL NULL - no_errors PRR21 HGNC ENSG00000221961 159 0 0 108 16 12.9032 KIF1A 0 genome.wustl.edu 37 2 241664737 241664737 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 241664737 241664737 G A SNP KIF1A ENST00000498729 human ensembl 74_37 -1 known missense c.4207 p.R1403C 1.000 NULL pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF1A HGNC ENSG00000130294 23 0 0 4 3 42.8571 DPYSL5 0 genome.wustl.edu 37 2 27164917 27164917 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27164917 27164917 G A SNP DPYSL5 ENST00000288699 human ensembl 74_37 +1 known missense c.1189 p.G397R 1.000 pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase - no_errors DPYSL5 HGNC ENSG00000157851 168 0 0 71 29 29 TMEM214 0 genome.wustl.edu 37 2 27263303 27263303 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27263303 27263303 C T SNP TMEM214 ENST00000238788 human ensembl 74_37 +1 known silent c.1882 p.L628 0.000 pfam_DUF2359_TMEM214 pfam_DUF2359_TMEM214 - no_errors TMEM214 HGNC ENSG00000119777 107 0 0 50 17 25.3731 KHK 0 genome.wustl.edu 37 2 27317386 27317386 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27317386 27317386 G A SNP KHK ENST00000260599 human ensembl 74_37 +1 known missense c.251 p.R84H 0.416 pfam_PfkB_dom pfam_PfkB_dom - no_errors KHK HGNC ENSG00000138030 148 0 0 96 31 24.4094 SLC5A6 0 genome.wustl.edu 37 2 27430334 27430334 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27430334 27430334 G A SNP SLC5A6 ENST00000310574 human ensembl 74_37 -1 known missense c.185 p.A62V 1.000 pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr - no_errors SLC5A6 HGNC ENSG00000138074 75 0 0 34 13 27.6596 DNAJC5G 0 genome.wustl.edu 37 2 27500791 27500791 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27500791 27500791 G A SNP DNAJC5G ENST00000296097 human ensembl 74_37 +1 known missense c.283 p.D95N 1.000 pfam_DnaJ_domain,superfamily_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain - no_errors DNAJC5G HGNC ENSG00000163793 69 0 0 26 10 27.7778 LCLAT1 0 genome.wustl.edu 37 2 30756096 30756096 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 30756096 30756096 C A SNP LCLAT1 ENST00000309052 human ensembl 74_37 +1 known missense c.394 p.L132M 1.000 pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase - no_errors LCLAT1 HGNC ENSG00000172954 214 0 0 161 45 21.8447 TSSC1 0 genome.wustl.edu 37 2 3196254 3196254 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 3196254 3196254 G A SNP TSSC1 ENST00000382125 human ensembl 74_37 -1 known missense c.920 p.S307L 1.000 pfscan_WD40_repeat_dom pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors TSSC1 HGNC ENSG00000032389 95 0 0 48 13 21.3115 BIRC6 0 genome.wustl.edu 37 2 32640462 32640462 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 32640462 32640462 G A SNP BIRC6 ENST00000421745 human ensembl 74_37 +1 known silent c.2103 p.P701 1.000 NULL pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2 - no_errors BIRC6 HGNC ENSG00000115760 50 0 0 29 12 29.2683 BIRC6 0 genome.wustl.edu 37 2 32750641 32750641 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 32750641 32750641 G A SNP BIRC6 ENST00000421745 human ensembl 74_37 +1 known missense c.11866 p.A3956T 0.999 NULL pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2 - no_errors BIRC6 HGNC ENSG00000115760 48 0 0 32 10 23.8095 CRIM1 0 genome.wustl.edu 37 2 36771623 36771623 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 36771623 36771623 A G SNP CRIM1 ENST00000280527 human ensembl 74_37 +1 known missense c.2728 p.I910V 1.000 NULL pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C - no_errors CRIM1 HGNC ENSG00000150938 49 0 0 37 13 26 EIF2AK2 0 genome.wustl.edu 37 2 37347260 37347260 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 37347260 37347260 T C SNP EIF2AK2 ENST00000233057 human ensembl 74_37 -1 known missense c.1090 p.I364V 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_dsRNA-bd_dom,superfamily_Kinase-like_dom,smart_dsRNA-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_dsRNA-bd_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors EIF2AK2 HGNC ENSG00000055332 42 0 0 18 11 37.931 PRKD3 0 genome.wustl.edu 37 2 37520360 37520360 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 37520360 37520360 C T SNP PRKD3 ENST00000234179 human ensembl 74_37 -1 known missense c.343 p.D115N 1.000 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd - no_errors PRKD3 HGNC ENSG00000115825 67 0 0 59 5 7.8125 CYP1B1 0 genome.wustl.edu 37 2 38302293 38302293 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 38302293 38302293 C T SNP CYP1B1 ENST00000260630 human ensembl 74_37 -1 known missense c.239 p.R80H 1.000 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450 - no_errors CYP1B1 HGNC ENSG00000138061 8 0 0 2 2 50 PLEKHH2 0 genome.wustl.edu 37 2 43973086 43973086 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 43973086 43973086 C T SNP PLEKHH2 ENST00000282406 human ensembl 74_37 +1 known silent c.3637 p.L1213 0.998 smart_Band_41_domain,pfscan_FERM_domain pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology - no_errors PLEKHH2 HGNC ENSG00000152527 43 0 0 26 7 21.2121 SPTBN1 0 genome.wustl.edu 37 2 54858182 54858182 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 54858182 54858182 G A SNP SPTBN1 ENST00000356805 human ensembl 74_37 +1 known missense c.2998 p.G1000S 1.000 pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology - no_errors SPTBN1 HGNC ENSG00000115306 92 0 0 37 11 22.9167 FANCL 0 genome.wustl.edu 37 2 58431275 58431275 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 58431275 58431275 A G SNP FANCL ENST00000233741 human ensembl 74_37 -1 known missense c.461 p.L154S 1.000 pfam_FancL_WD-rpt_cont_dom pfam_FancL_WD-rpt_cont_dom - no_errors FANCL HGNC ENSG00000115392 82 0 0 49 12 19.6721 PEX13 0 genome.wustl.edu 37 2 61259029 61259029 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 61259029 61259029 T C SNP PEX13 ENST00000295030 human ensembl 74_37 +1 known missense c.568 p.Y190H 1.000 pfam_Peroxin-13_N pfam_Peroxin-13_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain - no_errors PEX13 HGNC ENSG00000162928 86 0 0 50 10 16.6667 ANXA4 0 genome.wustl.edu 37 2 70037735 70037735 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 70037735 70037735 G T SNP ANXA4 ENST00000394295 human ensembl 74_37 +1 known missense c.407 p.R136L 0.973 pfam_Annexin_repeat,smart_Annexin_repeat,prints_AnnexinIV pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV - no_errors ANXA4 HGNC ENSG00000196975 66 0 0 29 17 36.9565 TGFA 0 genome.wustl.edu 37 2 70677991 70677991 + Nonstop_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 70677991 70677991 T C SNP TGFA ENST00000295400 human ensembl 74_37 -1 known nonstop c.483 p.*161W 0.960 NULL pfscan_EG-like_dom - no_errors TGFA HGNC ENSG00000163235 25 0 0 10 3 23.0769 ZNF638 0 genome.wustl.edu 37 2 71577133 71577133 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 71577133 71577133 G A SNP ZNF638 ENST00000264447 human ensembl 74_37 +1 known missense c.1049 p.R350Q 0.790 NULL pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom - no_errors ZNF638 HGNC ENSG00000075292 84 0 0 36 19 34.5455 FBXO41 0 genome.wustl.edu 37 2 73487618 73487618 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 73487618 73487618 T G SNP FBXO41 ENST00000295133 human ensembl 74_37 -1 known missense c.2531 p.Q844P 1.000 NULL superfamily_F-box_dom - no_errors FBXO41 HGNC ENSG00000163013 19 0 0 4 4 50 ALMS1 0 genome.wustl.edu 37 2 73800368 73800368 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 73800368 73800368 C T SNP ALMS1 ENST00000264448 human ensembl 74_37 +1 known silent c.11361 p.A3787 0.991 NULL NULL - no_errors ALMS1 HGNC ENSG00000116127 83 0 0 83 5 5.68182 C2orf78 0 genome.wustl.edu 37 2 74044060 74044060 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 74044060 74044060 T A SNP C2orf78 ENST00000409561 human ensembl 74_37 +1 novel missense c.2710 p.F904I 0.962 NULL NULL - no_errors C2orf78 HGNC ENSG00000187833 12 0 0 7 8 53.3333 TET3 0 genome.wustl.edu 37 2 74307623 74307623 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 74307623 74307623 A G SNP TET3 ENST00000409262 human ensembl 74_37 +1 known splice_site c.2181-2 e3-2 1.000 - - - no_errors TET3 HGNC ENSG00000187605 25 0 0 14 4 22.2222 DCTN1 0 genome.wustl.edu 37 2 74592756 74592756 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 74592756 74592756 C T SNP DCTN1 ENST00000361874 human ensembl 74_37 -1 known missense c.2915 p.R972Q 1.000 superfamily_P-loop_NTPase pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain - no_errors DCTN1 HGNC ENSG00000204843 84 0 0 56 15 21.1268 M1AP 0 genome.wustl.edu 37 2 74867389 74867389 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 74867389 74867389 C T SNP M1AP ENST00000290536 human ensembl 74_37 -1 known missense c.14 p.R5Q 0.000 NULL NULL - no_errors M1AP HGNC ENSG00000159374 55 0 0 28 13 31.7073 SEMA4F 0 genome.wustl.edu 37 2 74907036 74907036 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 74907036 74907036 C T SNP SEMA4F ENST00000357877 human ensembl 74_37 +1 known silent c.2013 p.L671 0.649 NULL pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom - no_errors SEMA4F HGNC ENSG00000135622 61 0 0 30 10 25 DNAH6 0 genome.wustl.edu 37 2 84811253 84811253 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 84811253 84811253 G A SNP DNAH6 ENST00000237449 human ensembl 74_37 +1 known missense c.2360 p.R787Q 0.987 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH6 HGNC ENSG00000115423 155 0 0 87 38 30.4 CD8A 0 genome.wustl.edu 37 2 87016520 87016520 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 87016520 87016520 T C SNP CD8A ENST00000538832 human ensembl 74_37 -1 known missense c.674 p.Y225C 0.998 NULL pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom - no_errors CD8A HGNC ENSG00000153563 170 0 0 90 17 15.8879 ASAP2 0 genome.wustl.edu 37 2 9463332 9463332 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 9463332 9463332 G A SNP ASAP2 ENST00000281419 human ensembl 74_37 +1 known missense c.553 p.E185K 0.999 NULL pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP - no_errors ASAP2 HGNC ENSG00000151693 196 0 0 110 20 15.3846 CPSF3 0 genome.wustl.edu 37 2 9581993 9581993 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 9581993 9581993 C A SNP CPSF3 ENST00000238112 human ensembl 74_37 +1 known missense c.983 p.S328Y 1.000 pfam_Beta_Casp pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like - no_errors CPSF3 HGNC ENSG00000119203 81 0 0 46 9 16.3636 ITPRIPL1 0 genome.wustl.edu 37 2 96993744 96993744 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 96993744 96993744 C T SNP ITPRIPL1 ENST00000361124 human ensembl 74_37 +1 known missense c.1399 p.R467W 0.004 NULL NULL - no_errors ITPRIPL1 HGNC ENSG00000198885 140 0 0 67 22 24.7191 FAHD2B 0 genome.wustl.edu 37 2 97755974 97755974 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 97755974 97755974 C A SNP FAHD2B ENST00000272610 human ensembl 74_37 -1 known missense c.334 p.G112C 1.000 pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel - no_errors FAHD2B HGNC ENSG00000144199 22 0 0 11 4 26.6667 TMEM131 0 genome.wustl.edu 37 2 98376193 98376193 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 98376193 98376193 C T SNP TMEM131 ENST00000186436 human ensembl 74_37 -1 known missense c.5128 p.V1710I 0.797 NULL pfam_DUF3651_TMEM131 - no_errors TMEM131 HGNC ENSG00000075568 31 0 0 12 10 45.4545 VWA3B 0 genome.wustl.edu 37 2 98928687 98928687 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 98928687 98928687 G A SNP VWA3B ENST00000477737 human ensembl 74_37 +1 known missense c.3760 p.A1254T 0.024 NULL pfam_VWF_A,smart_VWF_A,pfscan_VWF_A - no_errors VWA3B HGNC ENSG00000168658 96 0 0 36 31 46.2687 SNPH 0 genome.wustl.edu 37 20 1286354 1286354 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 1286354 1286354 C T SNP SNPH ENST00000381867 human ensembl 74_37 +1 known missense c.1273 p.R425C 0.010 NULL NULL - no_errors SNPH HGNC ENSG00000101298 27 0 0 12 5 29.4118 RRBP1 0 genome.wustl.edu 37 20 17601380 17601380 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 17601380 17601380 C T SNP RRBP1 ENST00000246043 human ensembl 74_37 -1 known missense c.3487 p.A1163T 0.000 NULL pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom - no_errors RRBP1 HGNC ENSG00000125844 46 0 0 38 3 7.31707 C20orf26 0 genome.wustl.edu 37 20 20079389 20079389 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 20079389 20079389 G A SNP C20orf26 ENST00000245957 human ensembl 74_37 +1 known missense c.790 p.G264R 0.999 NULL superfamily_Acyl_CoA_acyltransferase - no_errors C20orf26 HGNC ENSG00000089101 117 0 0 94 5 5.05051 XRN2 0 genome.wustl.edu 37 20 21367540 21367540 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 21367540 21367540 C T SNP XRN2 ENST00000377191 human ensembl 74_37 +1 known missense c.2683 p.R895W 1.000 pirsf_5_3_exoribonuclease_2 pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2 - no_errors XRN2 HGNC ENSG00000088930 146 0 0 56 28 33.3333 NINL 0 genome.wustl.edu 37 20 25439036 25439036 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 25439036 25439036 G A SNP NINL ENST00000278886 human ensembl 74_37 -1 known missense c.3826 p.R1276C 0.000 NULL pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom - no_errors NINL HGNC ENSG00000101004 123 0 0 68 9 11.6883 FASTKD5 0 genome.wustl.edu 37 20 3128626 3128626 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 3128626 3128626 C T SNP FASTKD5 ENST00000380266 human ensembl 74_37 -1 known missense c.1091 p.R364H 1.000 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP - no_errors FASTKD5 HGNC ENSG00000215251 121 0 0 70 18 20.4545 DNMT3B 0 genome.wustl.edu 37 20 31368231 31368231 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 31368231 31368231 G A SNP DNMT3B ENST00000328111 human ensembl 74_37 +1 known silent c.102 p.S34 0.748 NULL pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom - no_errors DNMT3B HGNC ENSG00000088305 47 0 0 21 11 34.375 CDK5RAP1 0 genome.wustl.edu 37 20 31962015 31962015 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 31962015 31962015 G T SNP CDK5RAP1 ENST00000357886 human ensembl 74_37 -1 known missense c.1153 p.L385M 1.000 pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase - no_errors CDK5RAP1 HGNC ENSG00000101391 129 0 0 67 28 29.4737 AHCY 0 genome.wustl.edu 37 20 32883307 32883307 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 32883307 32883307 C T SNP AHCY ENST00000217426 human ensembl 74_37 -1 known missense c.113 p.R38Q 1.000 pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase - no_errors AHCY HGNC ENSG00000101444 55 0 0 16 7 30.4348 AHCY 0 genome.wustl.edu 37 20 32883364 32883364 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 32883364 32883364 C T SNP AHCY ENST00000217426 human ensembl 74_37 -1 known missense c.56 p.R19H 1.000 pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase - no_errors AHCY HGNC ENSG00000101444 43 0 0 21 8 27.5862 MYH7B 0 genome.wustl.edu 37 20 33589114 33589114 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 33589114 33589114 C T SNP MYH7B ENST00000262873 human ensembl 74_37 +1 novel missense c.5668 p.R1890C 1.000 pfam_Myosin_tail pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH7B HGNC ENSG00000078814 16 0 0 6 3 33.3333 CNBD2 0 genome.wustl.edu 37 20 34572684 34572684 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 34572684 34572684 C T SNP CNBD2 ENST00000373973 human ensembl 74_37 +1 known missense c.700 p.R234W 0.671 superfamily_cNMP-bd-like,smart_cNMP-bd_dom pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom - no_errors CNBD2 HGNC ENSG00000149646 153 0 0 107 35 24.6479 CTNNBL1 0 genome.wustl.edu 37 20 36407704 36407704 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 36407704 36407704 G A SNP CTNNBL1 ENST00000405275 human ensembl 74_37 +1 known missense c.917 p.G306D 1.000 superfamily_ARM-type_fold pfam_CTNNBL1_N,superfamily_ARM-type_fold - no_errors CTNNBL1 HGNC ENSG00000132792 104 0 0 70 16 18.6047 CTNNBL1 0 genome.wustl.edu 37 20 36431375 36431375 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 36431375 36431375 C T SNP CTNNBL1 ENST00000405275 human ensembl 74_37 +1 known nonsense c.1057 p.R353* 1.000 superfamily_ARM-type_fold pfam_CTNNBL1_N,superfamily_ARM-type_fold - no_errors CTNNBL1 HGNC ENSG00000132792 63 0 0 30 10 25 CTNNBL1 0 genome.wustl.edu 37 20 36500368 36500368 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 36500368 36500368 C T SNP CTNNBL1 ENST00000405275 human ensembl 74_37 +1 known missense c.1564 p.R522W 1.000 NULL pfam_CTNNBL1_N,superfamily_ARM-type_fold - no_errors CTNNBL1 HGNC ENSG00000132792 87 0 0 49 3 5.76923 HSPA12B 0 genome.wustl.edu 37 20 3719329 3719329 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 3719329 3719329 C T SNP HSPA12B ENST00000254963 human ensembl 74_37 +1 known missense c.8 p.A3V 1.000 NULL NULL - no_errors HSPA12B HGNC ENSG00000132622 128 0 0 68 25 26.8817 ACTR5 0 genome.wustl.edu 37 20 37378698 37378698 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 37378698 37378698 C T SNP ACTR5 ENST00000243903 human ensembl 74_37 +1 known missense c.421 p.P141S 1.000 pfam_Actin-related,smart_Actin-related pfam_Actin-related,smart_Actin-related - no_errors ACTR5 HGNC ENSG00000101442 94 0 0 36 14 28 MAFB 0 genome.wustl.edu 37 20 39316981 39316981 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 39316981 39316981 C T SNP MAFB ENST00000373313 human ensembl 74_37 -1 known silent c.510 p.S170 0.986 NULL pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP - no_errors MAFB HGNC ENSG00000204103 10 0 0 4 4 50 R3HDML 0 genome.wustl.edu 37 20 42972055 42972055 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 42972055 42972055 A G SNP R3HDML ENST00000217043 human ensembl 74_37 +1 known missense c.419 p.E140G 0.958 pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1 pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1 - no_errors R3HDML HGNC ENSG00000101074 115 0 0 51 20 28.169 ENSG00000226812 0 genome.wustl.edu 37 20 42979474 42979474 + RNA SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 42979474 42979474 C A SNP ENSG00000226812 ENST00000430481 human ensembl 74_37 -1 known rna NULL NULL 0.003 - - - no_errors RP5-881L22.5 Clone_based_vega_gene ENSG00000226812 117 0 0 52 19 26.7606 HNF4A 0 genome.wustl.edu 37 20 43056983 43056983 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 43056983 43056983 A G SNP HNF4A ENST00000316099 human ensembl 74_37 +1 known missense c.1138 p.S380G 1.000 prints_COUP_TF pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4 - no_errors HNF4A HGNC ENSG00000101076 113 0 0 58 21 26.5823 SERINC3 0 genome.wustl.edu 37 20 43133514 43133514 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 43133514 43133514 C T SNP SERINC3 ENST00000255175 human ensembl 74_37 -1 known missense c.802 p.G268S 1.000 pfam_TMS_TDE pfam_TMS_TDE - no_errors SERINC3 HGNC ENSG00000132824 49 0 0 27 17 38.6364 MMP9 0 genome.wustl.edu 37 20 44639239 44639239 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 44639239 44639239 C T SNP MMP9 ENST00000372330 human ensembl 74_37 +1 known silent c.489 p.D163 0.717 pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A - no_errors MMP9 HGNC ENSG00000100985 37 0 0 23 3 11.5385 MMP9 0 genome.wustl.edu 37 20 44644923 44644923 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 44644923 44644923 G A SNP MMP9 ENST00000372330 human ensembl 74_37 +1 known nonsense c.2040 p.W680* 1.000 pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A - no_errors MMP9 HGNC ENSG00000100985 107 0 0 63 26 29.2135 SLC2A10 0 genome.wustl.edu 37 20 45354379 45354379 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 45354379 45354379 G A SNP SLC2A10 ENST00000359271 human ensembl 74_37 +1 known missense c.704 p.G235D 1.000 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt - no_errors SLC2A10 HGNC ENSG00000197496 175 0 0 79 32 28.8288 NCOA3 0 genome.wustl.edu 37 20 46265451 46265451 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 46265451 46265451 T G SNP NCOA3 ENST00000371998 human ensembl 74_37 +1 known missense c.2321 p.I774S 0.036 pirsf_Nuclear_rcpt_coactivator pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom - no_errors NCOA3 HGNC ENSG00000124151 57 0 0 34 14 29.1667 CSNK2A1 0 genome.wustl.edu 37 20 473005 473005 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 473005 473005 G A SNP CSNK2A1 ENST00000217244 human ensembl 74_37 -1 known nonsense c.514 p.R172* 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors CSNK2A1 HGNC ENSG00000101266 38 0 0 20 8 28.5714 SLC23A2 0 genome.wustl.edu 37 20 4864313 4864313 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 4864313 4864313 C T SNP SLC23A2 ENST00000338244 human ensembl 74_37 -1 known missense c.799 p.G267R 1.000 pfam_Xant/urac/vitC pfam_Xant/urac/vitC - no_errors SLC23A2 HGNC ENSG00000089057 137 0 0 65 20 23.5294 SLC23A2 0 genome.wustl.edu 37 20 4866508 4866508 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 4866508 4866508 C T SNP SLC23A2 ENST00000338244 human ensembl 74_37 -1 known missense c.530 p.R177Q 1.000 pfam_Xant/urac/vitC pfam_Xant/urac/vitC - no_errors SLC23A2 HGNC ENSG00000089057 38 0 0 27 7 20.5882 MOCS3 0 genome.wustl.edu 37 20 49575756 49575756 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 49575756 49575756 T C SNP MOCS3 ENST00000244051 human ensembl 74_37 +1 known missense c.377 p.V126A 1.000 pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom - no_errors MOCS3 HGNC ENSG00000124217 124 0 0 63 17 21.25 KCNG1 0 genome.wustl.edu 37 20 49620767 49620767 + Missense_Mutation SNP G G C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 49620767 49620767 G C SNP KCNG1 ENST00000371571 human ensembl 74_37 -1 known missense c.1351 p.L451V 1.000 pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3 - no_errors KCNG1 HGNC ENSG00000026559 117 0 0 60 4 6.25 KCNG1 0 genome.wustl.edu 37 20 49626736 49626736 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 49626736 49626736 C T SNP KCNG1 ENST00000371571 human ensembl 74_37 -1 known missense c.140 p.R47Q 1.000 NULL pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3 - no_errors KCNG1 HGNC ENSG00000026559 48 0 0 6 6 50 ZFP64 0 genome.wustl.edu 37 20 50769726 50769726 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 50769726 50769726 G A SNP ZFP64 ENST00000216923 human ensembl 74_37 -1 known silent c.1005 p.R335 0.813 smart_Znf_C2H2-like,pfscan_Znf_C2H2 smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZFP64 HGNC ENSG00000020256 124 0 0 54 20 27.027 ZBP1 0 genome.wustl.edu 37 20 56190021 56190021 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 56190021 56190021 G A SNP ZBP1 ENST00000343535 human ensembl 74_37 -1 known nonsense c.424 p.R142* 0.888 pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase - no_errors ZBP1 HGNC ENSG00000124256 255 0 0 115 45 28.125 TUBB1 0 genome.wustl.edu 37 20 57599576 57599576 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 57599576 57599576 C T SNP TUBB1 ENST00000217133 human ensembl 74_37 +1 known missense c.1094 p.A365V 1.000 pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin - no_errors TUBB1 HGNC ENSG00000101162 39 0 0 34 6 15 TUBB1 0 genome.wustl.edu 37 20 57599798 57599798 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 57599798 57599798 C T SNP TUBB1 ENST00000217133 human ensembl 74_37 +1 known missense c.1316 p.T439M 0.000 prints_Alpha_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin - no_errors TUBB1 HGNC ENSG00000101162 68 0 0 45 10 18.1818 LAMA5 0 genome.wustl.edu 37 20 60911481 60911481 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 60911481 60911481 G A SNP LAMA5 ENST00000252999 human ensembl 74_37 -1 known silent c.2238 p.C746 1.000 pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg - no_errors LAMA5 HGNC ENSG00000130702 75 0 0 30 6 16.6667 COL20A1 0 genome.wustl.edu 37 20 61959433 61959433 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 61959433 61959433 C T SNP COL20A1 ENST00000326996 human ensembl 74_37 +1 known silent c.3663 p.G1221 0.337 pfam_Collagen pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A - no_errors COL20A1 HGNC ENSG00000101203 78 0 0 34 7 17.0732 C20orf195 0 genome.wustl.edu 37 20 62187663 62187663 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 62187663 62187663 C T SNP C20orf195 ENST00000370097 human ensembl 74_37 +1 known missense c.647 p.A216V 0.998 superfamily_Fibronectin_type3 superfamily_Fibronectin_type3 - no_errors C20orf195 HGNC ENSG00000125531 283 0 0 100 42 29.5775 HELZ2 0 genome.wustl.edu 37 20 62194368 62194368 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 62194368 62194368 C T SNP HELZ2 ENST00000467148 human ensembl 74_37 -1 known missense c.5807 p.R1936H 0.000 NULL superfamily_P-loop_NTPase - no_errors HELZ2 HGNC ENSG00000130589 16 0 0 8 4 33.3333 RTEL1 0 genome.wustl.edu 37 20 62324527 62324527 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 62324527 62324527 G A SNP RTEL1 ENST00000318100 human ensembl 74_37 +1 known silent c.2883 p.K961 0.975 NULL pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3 - no_errors RTEL1 HGNC ENSG00000258366 186 0 0 80 32 28.5714 MIR941-3 0 genome.wustl.edu 37 20 62551193 62551193 + RNA SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 62551193 62551193 G T SNP MIR941-3 ENST00000401376 human ensembl 74_37 +1 known rna NULL NULL 0.980 - - - no_errors MIR941-3 HGNC ENSG00000216195 60 0 0 21 14 40 OPRL1 0 genome.wustl.edu 37 20 62729761 62729761 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 62729761 62729761 G A SNP OPRL1 ENST00000336866 human ensembl 74_37 +1 known missense c.722 p.R241Q 1.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_X_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt - no_errors OPRL1 HGNC ENSG00000125510 178 0 0 90 20 18.1818 ANGPT4 0 genome.wustl.edu 37 20 870881 870881 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 870881 870881 C T SNP ANGPT4 ENST00000381922 human ensembl 74_37 -1 known missense c.440 p.R147H 0.999 NULL pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom - no_errors ANGPT4 HGNC ENSG00000101280 58 0 0 23 16 41.0256 TPTE 0 genome.wustl.edu 37 21 10971319 10971319 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 10971319 10971319 A G SNP TPTE ENST00000361285 human ensembl 74_37 -1 known missense c.38 p.V13A 0.001 NULL pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_errors TPTE HGNC ENSG00000166157 85 0 0 53 5 8.62069 NRIP1 0 genome.wustl.edu 37 21 16340186 16340186 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 16340186 16340186 C T SNP NRIP1 ENST00000318948 human ensembl 74_37 -1 known missense c.328 p.V110I 1.000 NULL NULL - no_errors NRIP1 HGNC ENSG00000180530 91 0 0 79 5 5.95238 CYYR1 0 genome.wustl.edu 37 21 27840845 27840845 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 27840845 27840845 G A SNP CYYR1 ENST00000299340 human ensembl 74_37 -1 known missense c.440 p.P147L 1.000 pfam_CYYR1 pfam_CYYR1 - no_errors CYYR1 HGNC ENSG00000166265 93 0 0 50 6 10.7143 LTN1 0 genome.wustl.edu 37 21 30339484 30339484 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 30339484 30339484 A G SNP LTN1 ENST00000389194 human ensembl 74_37 -1 known silent c.1467 p.D489 0.044 superfamily_ARM-type_fold pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING - no_errors LTN1 HGNC ENSG00000198862 38 0 0 16 7 30.4348 MAP3K7CL 0 genome.wustl.edu 37 21 30464856 30464856 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 30464856 30464856 G A SNP MAP3K7CL ENST00000341618 human ensembl 74_37 +1 known silent c.324 p.K108 0.938 NULL NULL - no_errors MAP3K7CL HGNC ENSG00000156265 94 0 0 77 5 6.09756 TIAM1 0 genome.wustl.edu 37 21 32502534 32502534 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 32502534 32502534 C T SNP TIAM1 ENST00000286827 human ensembl 74_37 -1 known missense c.4042 p.A1348T 1.000 smart_Pleckstrin_homology pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain - no_errors TIAM1 HGNC ENSG00000156299 205 1 0.485437 112 42 27.2727 TIAM1 0 genome.wustl.edu 37 21 32589954 32589954 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 32589954 32589954 G A SNP TIAM1 ENST00000286827 human ensembl 74_37 -1 known missense c.2057 p.A686V 0.974 NULL pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain - no_errors TIAM1 HGNC ENSG00000156299 128 0 0 72 25 25.7732 SYNJ1 0 genome.wustl.edu 37 21 34011320 34011320 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 34011320 34011320 C T SNP SYNJ1 ENST00000433931 human ensembl 74_37 -1 known missense c.3930 p.M1310I 0.912 NULL pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N - no_errors SYNJ1 HGNC ENSG00000159082 223 0 0 101 49 32.6667 CRYZL1 0 genome.wustl.edu 37 21 35003792 35003792 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 35003792 35003792 C A SNP CRYZL1 ENST00000381554 human ensembl 74_37 -1 known missense c.66 p.K22N 1.000 superfamily_GroES-like,smart_PKS_ER pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER - no_errors CRYZL1 HGNC ENSG00000205758 61 0 0 27 2 6.89655 KCNJ15 0 genome.wustl.edu 37 21 39671742 39671742 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 39671742 39671742 A G SNP KCNJ15 ENST00000328656 human ensembl 74_37 +1 known missense c.559 p.T187A 0.991 pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3 pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1 - no_errors KCNJ15 HGNC ENSG00000157551 67 0 0 28 22 44 ERG 0 genome.wustl.edu 37 21 39755470 39755470 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 39755470 39755470 G A SNP ERG ENST00000398919 human ensembl 74_37 -1 known missense c.1316 p.A439V 0.999 NULL pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom - no_errors ERG HGNC ENSG00000157554 44 0 0 24 10 29.4118 DSCAM 0 genome.wustl.edu 37 21 41423955 41423955 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 41423955 41423955 C T SNP DSCAM ENST00000400454 human ensembl 74_37 -1 known silent c.5115 p.T1705 0.843 NULL pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors DSCAM HGNC ENSG00000171587 133 0 0 69 33 32.3529 TRPM2 0 genome.wustl.edu 37 21 45811268 45811268 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 45811268 45811268 C T SNP TRPM2 ENST00000300482 human ensembl 74_37 +1 known silent c.1554 p.T518 0.018 NULL pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like - no_errors TRPM2 HGNC ENSG00000142185 179 0 0 70 36 33.9623 FAM207A 0 genome.wustl.edu 37 21 46387053 46387053 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 46387053 46387053 G A SNP FAM207A ENST00000291634 human ensembl 74_37 +1 known missense c.457 p.E153K 0.005 NULL NULL - no_errors FAM207A HGNC ENSG00000160256 57 0 0 23 14 37.8378 LSS 0 genome.wustl.edu 37 21 47648682 47648682 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 47648682 47648682 G A SNP LSS ENST00000472272 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors LSS HGNC ENSG00000160285 19 0 0 9 5 35.7143 DGCR14 0 genome.wustl.edu 37 22 19130071 19130071 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 19130071 19130071 C T SNP DGCR14 ENST00000252137 human ensembl 74_37 -1 known missense c.380 p.R127H 0.000 pfam_Nuclear_protein_DGCR14 pfam_Nuclear_protein_DGCR14 - no_errors DGCR14 HGNC ENSG00000100056 208 0 0 104 41 28.2759 CLTCL1 0 genome.wustl.edu 37 22 19263160 19263160 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 19263160 19263160 A G SNP CLTCL1 ENST00000263200 human ensembl 74_37 -1 known missense c.236 p.V79A 1.000 superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain - no_errors CLTCL1 HGNC ENSG00000070371 17 0 0 7 3 30 UFD1L 0 genome.wustl.edu 37 22 19442297 19442297 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 19442297 19442297 C T SNP UFD1L ENST00000263202 human ensembl 74_37 -1 known missense c.824 p.R275H 1.000 NULL pfam_UFD1 - no_errors UFD1L HGNC ENSG00000070010 71 0 0 27 10 27.027 HIC2 0 genome.wustl.edu 37 22 21799284 21799284 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 21799284 21799284 C T SNP HIC2 ENST00000407464 human ensembl 74_37 +1 known silent c.100 p.L34 1.000 superfamily_BTB/POZ_fold pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors HIC2 HGNC ENSG00000169635 72 0 0 44 14 24.1379 PPM1F 0 genome.wustl.edu 37 22 22287763 22287763 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 22287763 22287763 C A SNP PPM1F ENST00000263212 human ensembl 74_37 -1 known missense c.747 p.E249D 1.000 pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom - no_errors PPM1F HGNC ENSG00000100034 44 0 0 19 6 24 BMS1P20 0 genome.wustl.edu 37 22 22661258 22661258 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 22661258 22661258 C T SNP BMS1P20 ENST00000426066 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors BMS1P20 HGNC ENSG00000236850 70 0 0 41 11 21.1538 MMP11 0 genome.wustl.edu 37 22 24122599 24122599 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 24122599 24122599 C T SNP MMP11 ENST00000215743 human ensembl 74_37 +1 known missense c.392 p.A131V 0.669 pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A - no_errors MMP11 HGNC ENSG00000099953 81 0 0 41 16 28.0702 SMARCB1 0 genome.wustl.edu 37 22 24135751 24135751 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 24135751 24135751 G A SNP SMARCB1 ENST00000263121 human ensembl 74_37 +1 known missense c.238 p.G80R 1.000 pirsf_SWI_SNF_chromatin_remodel_cplx pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx - no_errors SMARCB1 HGNC ENSG00000099956 237 0 0 144 54 27.2727 HSCB 0 genome.wustl.edu 37 22 29141967 29141967 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 29141967 29141967 C T SNP HSCB ENST00000216027 human ensembl 74_37 +1 known missense c.539 p.A180V 0.033 pfam_HscB_oligo_C,superfamily_HscB_oligo_C,tigrfam_HscB pfam_HscB_oligo_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HscB_oligo_C,tigrfam_HscB - no_errors HSCB HGNC ENSG00000100209 60 0 0 35 9 20.4545 RHBDD3 0 genome.wustl.edu 37 22 29661578 29661578 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 29661578 29661578 G T SNP RHBDD3 ENST00000216085 human ensembl 74_37 -1 known missense c.38 p.A13E 0.060 NULL pfam_Peptidase_S54_rhomboid_dom,superfamily_UBA-like - no_errors RHBDD3 HGNC ENSG00000100263 36 0 0 18 2 10 AP1B1 0 genome.wustl.edu 37 22 29752476 29752476 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 29752476 29752476 G A SNP AP1B1 ENST00000357586 human ensembl 74_37 -1 known nonsense c.655 p.Q219* 1.000 pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4 pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4 - no_errors AP1B1 HGNC ENSG00000100280 61 0 0 35 10 22.2222 CCDC157 0 genome.wustl.edu 37 22 30772567 30772567 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 30772567 30772567 T C SNP CCDC157 ENST00000338306 human ensembl 74_37 +1 known missense c.2092 p.S698P 0.001 NULL superfamily_Prefoldin,superfamily_t-SNARE - no_errors CCDC157 HGNC ENSG00000187860 311 3 0.955414 204 11 5.11628 GAL3ST1 0 genome.wustl.edu 37 22 30951569 30951569 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 30951569 30951569 G A SNP GAL3ST1 ENST00000338911 human ensembl 74_37 -1 known nonsense c.643 p.R215* 1.000 pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase - no_errors GAL3ST1 HGNC ENSG00000128242 116 0 0 65 22 25.2874 INPP5J 0 genome.wustl.edu 37 22 31530004 31530004 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 31530004 31530004 C T SNP INPP5J ENST00000331075 human ensembl 74_37 +1 known missense c.2620 p.R874C 1.000 NULL pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc - no_errors INPP5J HGNC ENSG00000185133 22 0 0 12 5 29.4118 MYH9 0 genome.wustl.edu 37 22 36684826 36684826 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 36684826 36684826 G T SNP MYH9 ENST00000216181 human ensembl 74_37 -1 known missense c.4717 p.L1573M 1.000 pfam_Myosin_tail pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH9 HGNC ENSG00000100345 213 0 0 90 41 31.2977 SSTR3 0 genome.wustl.edu 37 22 37603060 37603060 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 37603060 37603060 G A SNP SSTR3 ENST00000328544 human ensembl 74_37 -1 known silent c.783 p.A261 0.838 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt - no_errors SSTR3 HGNC ENSG00000183473 113 1 0.877193 58 19 24.6753 ELFN2 0 genome.wustl.edu 37 22 37771425 37771425 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 37771425 37771425 C T SNP ELFN2 ENST00000402918 human ensembl 74_37 -1 known silent c.150 p.P50 0.031 NULL superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor - no_errors ELFN2 HGNC ENSG00000166897 63 0 0 28 14 33.3333 BAIAP2L2 0 genome.wustl.edu 37 22 38485118 38485118 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 38485118 38485118 G A SNP BAIAP2L2 ENST00000381669 human ensembl 74_37 -1 known missense c.886 p.R296C 0.102 NULL pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain - no_errors BAIAP2L2 HGNC ENSG00000128298 14 0 0 3 3 50 TNRC6B 0 genome.wustl.edu 37 22 40657921 40657921 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 40657921 40657921 C T SNP TNRC6B ENST00000454349 human ensembl 74_37 +1 known silent c.201 p.G67 1.000 NULL pfam_Argonaute_hook_dom,superfamily_UBA-like - no_errors TNRC6B HGNC ENSG00000100354 35 0 0 15 4 21.0526 ZC3H7B 0 genome.wustl.edu 37 22 41723285 41723285 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 41723285 41723285 C T SNP ZC3H7B ENST00000351589 human ensembl 74_37 +1 known missense c.361 p.R121C 1.000 smart_TPR_repeat,pfscan_TPR-contain_dom pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors ZC3H7B HGNC ENSG00000100403 174 1 0.571429 80 30 27.2727 ACO2 0 genome.wustl.edu 37 22 41919894 41919894 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 41919894 41919894 G A SNP ACO2 ENST00000216254 human ensembl 74_37 +1 known silent c.1431 p.T477 0.801 pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like - no_errors ACO2 HGNC ENSG00000100412 89 0 0 51 21 29.1667 MEI1 0 genome.wustl.edu 37 22 42095566 42095566 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 42095566 42095566 G A SNP MEI1 ENST00000401548 human ensembl 74_37 +1 known silent c.24 p.T8 0.000 NULL superfamily_ARM-type_fold - no_errors MEI1 HGNC ENSG00000167077 63 0 0 33 17 34 SCUBE1 0 genome.wustl.edu 37 22 43606145 43606145 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 43606145 43606145 C T SNP SCUBE1 ENST00000360835 human ensembl 74_37 -1 known missense c.2485 p.A829T 0.964 pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom - no_errors SCUBE1 HGNC ENSG00000159307 61 0 0 37 18 32.7273 SCUBE1 0 genome.wustl.edu 37 22 43606181 43606181 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 43606181 43606181 C T SNP SCUBE1 ENST00000360835 human ensembl 74_37 -1 known missense c.2449 p.D817N 1.000 pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom - no_errors SCUBE1 HGNC ENSG00000159307 57 0 0 34 14 29.1667 SAMM50 0 genome.wustl.edu 37 22 44392179 44392179 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 44392179 44392179 C T SNP SAMM50 ENST00000493621 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors SAMM50 HGNC ENSG00000100347 505 1 0.197628 320 70 17.9487 CELSR1 0 genome.wustl.edu 37 22 46785200 46785200 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 46785200 46785200 G A SNP CELSR1 ENST00000262738 human ensembl 74_37 -1 known missense c.6542 p.A2181V 0.040 pfam_DUF3497 pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like - no_errors CELSR1 HGNC ENSG00000075275 88 0 0 64 5 7.24638 GRAMD4 0 genome.wustl.edu 37 22 47054158 47054158 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 47054158 47054158 C T SNP GRAMD4 ENST00000361034 human ensembl 74_37 +1 known missense c.358 p.R120W 0.897 NULL pfam_GRAM,smart_GRAM - no_errors GRAMD4 HGNC ENSG00000075240 41 0 0 14 7 33.3333 ZBED4 0 genome.wustl.edu 37 22 50279583 50279583 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50279583 50279583 G A SNP ZBED4 ENST00000216268 human ensembl 74_37 +1 known missense c.2273 p.R758Q 0.809 superfamily_RNaseH-like_dom pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd - no_errors ZBED4 HGNC ENSG00000100426 41 0 0 17 10 37.037 HDAC10 0 genome.wustl.edu 37 22 50686206 50686206 + Splice_Site SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50686206 50686206 C A SNP HDAC10 ENST00000216271 human ensembl 74_37 -1 known splice_site c.1338-1 e14-1 0.963 - - - no_errors HDAC10 HGNC ENSG00000100429 64 0 0 26 15 36.5854 MAPK12 0 genome.wustl.edu 37 22 50693747 50693747 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50693747 50693747 C T SNP MAPK12 ENST00000215659 human ensembl 74_37 -1 known silent c.903 p.T301 0.008 pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_p38 - no_errors MAPK12 HGNC ENSG00000188130 164 0 0 71 23 24.4681 PLXNB2 0 genome.wustl.edu 37 22 50716356 50716356 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50716356 50716356 G A SNP PLXNB2 ENST00000359337 human ensembl 74_37 -1 known silent c.4974 p.F1658 0.987 pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom - no_errors PLXNB2 HGNC ENSG00000196576 99 0 0 27 16 37.2093 PLXNB2 0 genome.wustl.edu 37 22 50719833 50719833 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50719833 50719833 G A SNP PLXNB2 ENST00000359337 human ensembl 74_37 -1 known silent c.3618 p.I1206 0.007 NULL pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom - no_errors PLXNB2 HGNC ENSG00000196576 30 0 0 16 5 23.8095 PPP6R2 0 genome.wustl.edu 37 22 50854560 50854560 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50854560 50854560 T C SNP PPP6R2 ENST00000216061 human ensembl 74_37 +1 known silent c.592 p.L198 0.742 pfam_SAPS,superfamily_ARM-type_fold pfam_SAPS,superfamily_ARM-type_fold - no_errors PPP6R2 HGNC ENSG00000100239 56 0 0 47 12 20.339 SBF1 0 genome.wustl.edu 37 22 50885653 50885653 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50885653 50885653 C T SNP SBF1 ENST00000380817 human ensembl 74_37 -1 known missense c.5600 p.R1867H 0.998 pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology - no_errors SBF1 HGNC ENSG00000100241 50 0 0 17 11 39.2857 MAPK8IP2 0 genome.wustl.edu 37 22 51045086 51045086 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 51045086 51045086 A G SNP MAPK8IP2 ENST00000329492 human ensembl 74_37 +1 known missense c.2122 p.I708V 1.000 pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain - no_errors MAPK8IP2 HGNC ENSG00000008735 10 0 0 8 2 20 RPL23AP82 0 genome.wustl.edu 37 22 51237266 51237266 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 51237266 51237266 G A SNP RPL23AP82 ENST00000462238 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors AC002055.4 Clone_based_vega_gene ENSG00000184319 46 0 0 26 10 27.7778 ATP2B2 0 genome.wustl.edu 37 3 10382254 10382254 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 10382254 10382254 C T SNP ATP2B2 ENST00000352432 human ensembl 74_37 -1 known missense c.3052 p.G1018S 1.000 pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_plasma pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP2B2 HGNC ENSG00000157087 118 0 0 60 36 37.5 ATP2B2 0 genome.wustl.edu 37 3 10382279 10382279 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 10382279 10382279 G A SNP ATP2B2 ENST00000352432 human ensembl 74_37 -1 known silent c.3027 p.N1009 0.994 pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_plasma pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP2B2 HGNC ENSG00000157087 154 0 0 88 30 25.4237 SIDT1 0 genome.wustl.edu 37 3 113331030 113331030 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 113331030 113331030 G A SNP SIDT1 ENST00000393830 human ensembl 74_37 +1 known missense c.1955 p.R652H 1.000 NULL NULL - no_errors SIDT1 HGNC ENSG00000072858 38 0 0 16 13 44.8276 IGSF11 0 genome.wustl.edu 37 3 118621386 118621386 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 118621386 118621386 C T SNP IGSF11 ENST00000393775 human ensembl 74_37 -1 known missense c.1277 p.R426Q 1.000 NULL pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors IGSF11 HGNC ENSG00000144847 222 1 0.44843 140 43 23.4973 POLQ 0 genome.wustl.edu 37 3 121260276 121260276 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 121260276 121260276 G A SNP POLQ ENST00000264233 human ensembl 74_37 -1 known missense c.394 p.R132W 1.000 pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A - no_errors POLQ HGNC ENSG00000051341 245 0 0 162 9 5.26316 KALRN 0 genome.wustl.edu 37 3 124393214 124393214 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 124393214 124393214 G A SNP KALRN ENST00000360013 human ensembl 74_37 +1 known missense c.6946 p.D2316N 0.944 NULL pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors KALRN HGNC ENSG00000160145 138 0 0 85 19 18.2692 ITGB5 0 genome.wustl.edu 37 3 124515302 124515302 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 124515302 124515302 C A SNP ITGB5 ENST00000296181 human ensembl 74_37 -1 known missense c.1626 p.K542N 1.000 pirsf_Integrin_bsu,pfam_EGF_extracell pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu - no_errors ITGB5 HGNC ENSG00000082781 156 0 0 108 31 22.3022 HEG1 0 genome.wustl.edu 37 3 124716537 124716537 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 124716537 124716537 G A SNP HEG1 ENST00000311127 human ensembl 74_37 -1 known silent c.3648 p.C1216 1.000 smart_EG-like_dom pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom - no_errors HEG1 HGNC ENSG00000173706 39 0 0 11 6 35.2941 UROC1 0 genome.wustl.edu 37 3 126207085 126207085 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 126207085 126207085 G A SNP UROC1 ENST00000290868 human ensembl 74_37 -1 known silent c.1746 p.R582 0.021 pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase - no_errors UROC1 HGNC ENSG00000159650 182 0 0 123 34 21.6561 TPRA1 0 genome.wustl.edu 37 3 127292484 127292484 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 127292484 127292484 C T SNP TPRA1 ENST00000296210 human ensembl 74_37 -1 known missense c.838 p.E280K 0.963 NULL pfam_Uncharacterised_TM-40 - no_errors TPRA1 HGNC ENSG00000163870 94 0 0 41 23 35.9375 MCM2 0 genome.wustl.edu 37 3 127323819 127323819 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 127323819 127323819 G A SNP MCM2 ENST00000265056 human ensembl 74_37 +1 known missense c.493 p.E165K 0.999 pfam_MCM2 pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase - no_errors MCM2 HGNC ENSG00000073111 46 0 0 25 9 26.4706 KIAA1257 0 genome.wustl.edu 37 3 128690075 128690075 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 128690075 128690075 C T SNP KIAA1257 ENST00000265068 human ensembl 74_37 -1 known missense c.1223 p.R408Q 0.000 NULL NULL - no_errors KIAA1257 HGNC ENSG00000114656 23 0 0 13 9 40.9091 CLSTN2 0 genome.wustl.edu 37 3 140178491 140178491 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 140178491 140178491 G A SNP CLSTN2 ENST00000458420 human ensembl 74_37 +1 known missense c.1102 p.D368N 0.986 superfamily_ConA-like_lec_gl_sf pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CLSTN2 HGNC ENSG00000158258 51 0 0 22 6 21.4286 RASA2 0 genome.wustl.edu 37 3 141295906 141295906 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 141295906 141295906 C T SNP RASA2 ENST00000452898 human ensembl 74_37 +1 known silent c.1548 p.A516 0.996 pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif - no_errors RASA2 HGNC ENSG00000155903 163 0 0 93 31 25 SLC6A6 0 genome.wustl.edu 37 3 14523278 14523278 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 14523278 14523278 C A SNP SLC6A6 ENST00000360861 human ensembl 74_37 +1 known missense c.1651 p.L551I 1.000 pfam_Na/ntran_symport,pfscan_Na/ntran_symport pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine - no_errors SLC6A6 HGNC ENSG00000131389 105 0 0 64 14 17.9487 ZIC1 0 genome.wustl.edu 37 3 147130352 147130352 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 147130352 147130352 G A SNP ZIC1 ENST00000282928 human ensembl 74_37 +1 known missense c.1030 p.A344T 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZIC1 HGNC ENSG00000152977 93 0 0 42 25 37.3134 HLTF 0 genome.wustl.edu 37 3 148763957 148763957 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 148763957 148763957 C T SNP HLTF ENST00000310053 human ensembl 74_37 -1 known missense c.1982 p.R661H 1.000 pfam_SNF2_N,superfamily_P-loop_NTPase pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors HLTF HGNC ENSG00000071794 27 0 0 12 7 36.8421 ZFYVE20 0 genome.wustl.edu 37 3 15123964 15123964 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 15123964 15123964 G A SNP ZFYVE20 ENST00000253699 human ensembl 74_37 -1 known silent c.750 p.R250 1.000 pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2 - no_errors ZFYVE20 HGNC ENSG00000131381 84 0 0 72 4 5.26316 ZFYVE20 0 genome.wustl.edu 37 3 15137584 15137584 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 15137584 15137584 A C SNP ZFYVE20 ENST00000253699 human ensembl 74_37 -1 known missense c.44 p.L15R 0.998 pfscan_Znf_C2H2 pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2 - no_errors ZFYVE20 HGNC ENSG00000131381 72 0 0 45 10 18.1818 SUCNR1 0 genome.wustl.edu 37 3 151598716 151598716 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 151598716 151598716 C T SNP SUCNR1 ENST00000362032 human ensembl 74_37 +1 known nonsense c.385 p.R129* 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors SUCNR1 HGNC ENSG00000198829 63 0 0 41 8 16.3265 TIPARP 0 genome.wustl.edu 37 3 156396200 156396200 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 156396200 156396200 C T SNP TIPARP ENST00000295924 human ensembl 74_37 +1 known silent c.714 p.N238 0.990 NULL pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom - no_errors TIPARP HGNC ENSG00000163659 140 0 0 71 39 35.4545 SMC4 0 genome.wustl.edu 37 3 160132162 160132162 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 160132162 160132162 A G SNP SMC4 ENST00000344722 human ensembl 74_37 +1 known missense c.1129 p.N377D 1.000 pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge - no_errors SMC4 HGNC ENSG00000113810 55 0 0 21 4 16 MECOM 0 genome.wustl.edu 37 3 168838893 168838893 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 168838893 168838893 C T SNP MECOM ENST00000494292 human ensembl 74_37 -1 known silent c.1083 p.S361 0.990 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors MECOM HGNC ENSG00000085276 77 0 0 40 15 27.2727 PHC3 0 genome.wustl.edu 37 3 169863295 169863295 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 169863295 169863295 G A SNP PHC3 ENST00000479467 human ensembl 74_37 -1 known missense c.571 p.R191C 1.000 NULL NULL - no_errors PHC3 HGNC ENSG00000173889 70 0 0 44 14 24.1379 ZMAT3 0 genome.wustl.edu 37 3 178748762 178748762 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 178748762 178748762 C T SNP ZMAT3 ENST00000311417 human ensembl 74_37 -1 known missense c.296 p.R99Q 1.000 smart_Znf_U1 pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like - no_errors ZMAT3 HGNC ENSG00000172667 62 0 0 34 12 26.087 PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 74_37 +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 52 0 0 43 23 34.8485 FXR1 0 genome.wustl.edu 37 3 180680862 180680862 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 180680862 180680862 T C SNP FXR1 ENST00000357559 human ensembl 74_37 +1 known silent c.1182 p.N394 1.000 pfam_Frag_X_MRP_fam pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1 - no_errors FXR1 HGNC ENSG00000114416 88 0 0 44 17 27.8689 PARL 0 genome.wustl.edu 37 3 183551589 183551589 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 183551589 183551589 C T SNP PARL ENST00000317096 human ensembl 74_37 -1 known missense c.853 p.A285T 1.000 pfam_Peptidase_S54_rhomboid_dom pfam_Peptidase_S54_rhomboid_dom - no_errors PARL HGNC ENSG00000175193 79 0 0 42 26 38.2353 AP2M1 0 genome.wustl.edu 37 3 183900562 183900562 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 183900562 183900562 G A SNP AP2M1 ENST00000292807 human ensembl 74_37 +1 known missense c.1079 p.G360D 1.000 pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu - no_errors AP2M1 HGNC ENSG00000161203 56 0 0 42 7 14.2857 EIF4G1 0 genome.wustl.edu 37 3 184049755 184049755 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 184049755 184049755 A G SNP EIF4G1 ENST00000352767 human ensembl 74_37 +1 known missense c.4520 p.D1507G 1.000 superfamily_ARM-type_fold pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain - no_errors EIF4G1 HGNC ENSG00000114867 71 0 0 37 11 22.9167 FAM131A 0 genome.wustl.edu 37 3 184062581 184062581 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 184062581 184062581 G A SNP FAM131A ENST00000383847 human ensembl 74_37 +1 known silent c.924 p.S308 0.992 NULL NULL - no_errors FAM131A HGNC ENSG00000175182 117 0 0 83 6 6.74157 CHRD 0 genome.wustl.edu 37 3 184104496 184104496 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 184104496 184104496 C T SNP CHRD ENST00000204604 human ensembl 74_37 +1 known missense c.2149 p.R717C 1.000 pfam_VWF_C,smart_VWF_C,pirsf_Chordin,pfscan_VWF_C pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C - no_errors CHRD HGNC ENSG00000090539 26 0 0 15 3 16.6667 C3orf65 0 genome.wustl.edu 37 3 185434497 185434497 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 185434497 185434497 T C SNP C3orf65 ENST00000296270 human ensembl 74_37 +1 known silent c.330 p.H110 0.000 NULL NULL - no_errors C3orf65 HGNC ENSG00000163915 58 0 0 33 11 25 TRA2B 0 genome.wustl.edu 37 3 185643365 185643365 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 185643365 185643365 G A SNP TRA2B ENST00000453386 human ensembl 74_37 -1 known missense c.220 p.R74C 1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors TRA2B HGNC ENSG00000136527 82 0 0 48 17 26.1538 FGF12 0 genome.wustl.edu 37 3 192125845 192125845 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 192125845 192125845 G A SNP FGF12 ENST00000454309 human ensembl 74_37 -1 known silent c.168 p.S56 1.000 NULL pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam - no_errors FGF12 HGNC ENSG00000114279 233 0 0 133 69 34.1584 ATP13A4 0 genome.wustl.edu 37 3 193151640 193151640 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 193151640 193151640 C T SNP ATP13A4 ENST00000342695 human ensembl 74_37 -1 known missense c.2836 p.V946I 0.962 tigrfam_ATPase_P-typ_Cation_typ_V pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP13A4 HGNC ENSG00000127249 57 0 0 36 12 25 CPN2 0 genome.wustl.edu 37 3 194062823 194062823 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 194062823 194062823 G A SNP CPN2 ENST00000323830 human ensembl 74_37 -1 known silent c.609 p.N203 0.088 pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C - no_errors CPN2 HGNC ENSG00000178772 47 0 0 16 15 48.3871 GP5 0 genome.wustl.edu 37 3 194118638 194118638 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 194118638 194118638 T C SNP GP5 ENST00000323007 human ensembl 74_37 -1 known missense c.374 p.E125G 1.000 smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C - no_errors GP5 HGNC ENSG00000178732 89 0 0 53 23 30.2632 ACAP2 0 genome.wustl.edu 37 3 195000079 195000079 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 195000079 195000079 T C SNP ACAP2 ENST00000326793 human ensembl 74_37 -1 known missense c.2315 p.Q772R 1.000 NULL pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP - no_errors ACAP2 HGNC ENSG00000114331 62 0 0 41 3 6.81818 MUC20 0 genome.wustl.edu 37 3 195447871 195447871 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 195447871 195447871 C T SNP MUC20 ENST00000480350 human ensembl 74_37 +1 putative rna NULL NULL 0.000 - - - no_errors MUC20 HGNC ENSG00000176945 9 0 0 4 3 42.8571 RNF168 0 genome.wustl.edu 37 3 196210722 196210722 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 196210722 196210722 T C SNP RNF168 ENST00000318037 human ensembl 74_37 -1 known missense c.599 p.N200S 0.254 NULL pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF168 HGNC ENSG00000163961 177 1 0.561798 71 56 44.0945 NEK10 0 genome.wustl.edu 37 3 27161345 27161345 + Silent SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 27161345 27161345 A T SNP NEK10 ENST00000383771 human ensembl 74_37 -1 known silent c.1173 p.S391 1.000 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom - no_errors NEK10 HGNC ENSG00000163491 67 0 0 44 23 34.3284 TRIM71 0 genome.wustl.edu 37 3 32860341 32860341 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 32860341 32860341 G A SNP TRIM71 ENST00000383763 human ensembl 74_37 +1 known missense c.769 p.G257R 0.990 NULL pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM71 HGNC ENSG00000206557 54 0 0 13 8 38.0952 TRIM71 0 genome.wustl.edu 37 3 32932739 32932739 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 32932739 32932739 G A SNP TRIM71 ENST00000383763 human ensembl 74_37 +1 known silent c.2043 p.T681 0.862 pfscan_NHL_repeat_subgr pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM71 HGNC ENSG00000206557 73 0 0 34 18 34.6154 GLB1 0 genome.wustl.edu 37 3 33114135 33114135 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 33114135 33114135 C T SNP GLB1 ENST00000445488 human ensembl 74_37 -1 known missense c.290 p.R97H 1.000 pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35 pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35 - no_errors GLB1 HGNC ENSG00000170266 77 0 0 68 11 13.9241 STAC 0 genome.wustl.edu 37 3 36485095 36485095 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 36485095 36485095 G T SNP STAC ENST00000273183 human ensembl 74_37 +1 known missense c.351 p.K117N 1.000 pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain - no_errors STAC HGNC ENSG00000144681 150 0 0 79 29 26.8519 ITGA9 0 genome.wustl.edu 37 3 37560809 37560809 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 37560809 37560809 T C SNP ITGA9 ENST00000264741 human ensembl 74_37 +1 known silent c.1200 p.H400 0.104 smart_Int_alpha_beta-p pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha - no_errors ITGA9 HGNC ENSG00000144668 47 0 0 33 16 32.6531 VILL 0 genome.wustl.edu 37 3 38035202 38035202 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 38035202 38035202 C T SNP VILL ENST00000283713 human ensembl 74_37 +1 known silent c.39 p.G13 0.820 smart_Villin/Gelsolin pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin - no_errors VILL HGNC ENSG00000136059 50 0 0 28 12 30 XIRP1 0 genome.wustl.edu 37 3 39228905 39228905 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 39228905 39228905 G A SNP XIRP1 ENST00000340369 human ensembl 74_37 -1 known missense c.2032 p.R678W 0.001 NULL pfam_Actin-binding_Xin_repeat - no_errors XIRP1 HGNC ENSG00000168334 43 0 0 9 7 43.75 RPL14 0 genome.wustl.edu 37 3 40503441 40503441 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 40503441 40503441 A G SNP RPL14 ENST00000338970 human ensembl 74_37 +1 known missense c.366 p.I122M 1.000 pfam_Ribosomal_L14 pfam_Ribosomal_L14 - no_errors RPL14 HGNC ENSG00000188846 42 0 0 10 7 41.1765 TRAK1 0 genome.wustl.edu 37 3 42244237 42244237 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 42244237 42244237 G A SNP TRAK1 ENST00000396175 human ensembl 74_37 +1 known silent c.1563 p.P521 0.996 pfam_Traffickng_kinesin-bd_prot_dom pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom - no_errors TRAK1 HGNC ENSG00000182606 50 0 0 18 15 45.4545 NKTR 0 genome.wustl.edu 37 3 42684075 42684075 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 42684075 42684075 T C SNP NKTR ENST00000232978 human ensembl 74_37 +1 known missense c.4129 p.Y1377H 1.000 NULL pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom - no_errors NKTR HGNC ENSG00000114857 83 0 0 55 13 19.1176 CCDC13 0 genome.wustl.edu 37 3 42798652 42798652 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 42798652 42798652 G A SNP CCDC13 ENST00000310232 human ensembl 74_37 -1 known silent c.276 p.D92 0.993 NULL superfamily_Prefoldin - no_errors CCDC13 HGNC ENSG00000244607 148 0 0 78 36 31.5789 SNRK 0 genome.wustl.edu 37 3 43390026 43390026 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 43390026 43390026 G A SNP SNRK ENST00000296088 human ensembl 74_37 +1 known missense c.2275 p.A759T 1.000 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom - no_errors SNRK HGNC ENSG00000163788 34 0 0 13 6 31.5789 TGM4 0 genome.wustl.edu 37 3 44948665 44948665 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 44948665 44948665 A G SNP TGM4 ENST00000296125 human ensembl 74_37 +1 known missense c.1300 p.I434V 1.000 NULL pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like - no_errors TGM4 HGNC ENSG00000163810 176 0 0 148 13 8.07453 LARS2 0 genome.wustl.edu 37 3 45436077 45436077 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 45436077 45436077 G A SNP LARS2 ENST00000265537 human ensembl 74_37 +1 known silent c.132 p.T44 0.062 NULL pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-ligase_bac/mito,tigrfam_Leu-tRNA-ligase_bac/mito - no_errors LARS2 HGNC ENSG00000011376 95 0 0 57 29 33.7209 NBEAL2 0 genome.wustl.edu 37 3 47033984 47033984 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 47033984 47033984 C T SNP NBEAL2 ENST00000450053 human ensembl 74_37 +1 known missense c.1052 p.A351V 1.000 superfamily_ARM-type_fold pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors NBEAL2 HGNC ENSG00000160796 20 0 0 7 6 46.1538 PTPN23 0 genome.wustl.edu 37 3 47450550 47450550 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 47450550 47450550 G A SNP PTPN23 ENST00000265562 human ensembl 74_37 +1 known missense c.1615 p.A539T 1.000 NULL pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPN23 HGNC ENSG00000076201 135 0 0 55 24 30.3797 PTPN23 0 genome.wustl.edu 37 3 47450718 47450718 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 47450718 47450718 C T SNP PTPN23 ENST00000265562 human ensembl 74_37 +1 known missense c.1708 p.R570C 1.000 NULL pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPN23 HGNC ENSG00000076201 82 0 0 63 5 7.35294 CELSR3 0 genome.wustl.edu 37 3 48691723 48691723 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 48691723 48691723 T C SNP CELSR3 ENST00000544264 human ensembl 74_37 -1 known silent c.5151 p.A1717 1.000 superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like - no_errors CELSR3 HGNC ENSG00000008300 36 0 0 27 3 10 LAMB2 0 genome.wustl.edu 37 3 49168865 49168865 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 49168865 49168865 C T SNP LAMB2 ENST00000305544 human ensembl 74_37 -1 known missense c.659 p.R220H 1.000 pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N - no_errors LAMB2 HGNC ENSG00000172037 107 1 0.925926 40 14 25.9259 C3orf62 0 genome.wustl.edu 37 3 49308822 49308822 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 49308822 49308822 C T SNP C3orf62 ENST00000343010 human ensembl 74_37 -1 known missense c.595 p.E199K 0.818 NULL NULL - no_errors C3orf62 HGNC ENSG00000188315 108 1 0.917431 38 22 36.6667 IP6K1 0 genome.wustl.edu 37 3 49765665 49765665 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 49765665 49765665 G A SNP IP6K1 ENST00000321599 human ensembl 74_37 -1 known silent c.663 p.C221 0.977 pfam_IPK pfam_IPK - no_errors IP6K1 HGNC ENSG00000176095 101 0 0 51 22 30.137 SEMA3F 0 genome.wustl.edu 37 3 50212595 50212595 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 50212595 50212595 C T SNP SEMA3F ENST00000002829 human ensembl 74_37 +1 known missense c.523 p.R175C 0.766 pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom - no_errors SEMA3F HGNC ENSG00000001617 15 0 0 15 6 28.5714 SEMA3F 0 genome.wustl.edu 37 3 50219760 50219760 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 50219760 50219760 T C SNP SEMA3F ENST00000002829 human ensembl 74_37 +1 known silent c.687 p.T229 0.000 pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom - no_errors SEMA3F HGNC ENSG00000001617 163 0 0 100 44 30.5556 LSMEM2 0 genome.wustl.edu 37 3 50324596 50324596 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 50324596 50324596 G A SNP LSMEM2 ENST00000316436 human ensembl 74_37 +1 known missense c.458 p.R153Q 0.932 NULL NULL - no_errors LSMEM2 HGNC ENSG00000179564 58 0 0 29 12 29.2683 HYAL3 0 genome.wustl.edu 37 3 50330806 50330806 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 50330806 50330806 C T SNP HYAL3 ENST00000336307 human ensembl 74_37 -1 known missense c.1125 p.M375I 0.070 pirsf_Hyaluronidase pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase - no_errors HYAL3 HGNC ENSG00000186792 59 0 0 31 8 20.5128 RAD54L2 0 genome.wustl.edu 37 3 51664313 51664313 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 51664313 51664313 C T SNP RAD54L2 ENST00000409535 human ensembl 74_37 +1 known silent c.507 p.D169 1.000 NULL pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors RAD54L2 HGNC ENSG00000164080 97 0 0 63 27 30 TWF2 0 genome.wustl.edu 37 3 52263163 52263163 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 52263163 52263163 G T SNP TWF2 ENST00000305533 human ensembl 74_37 -1 known missense c.937 p.H313N 1.000 smart_Actin-bd_cofilin/tropomyosin pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin - no_errors TWF2 HGNC ENSG00000247596 113 0 0 68 19 21.8391 SEMA3G 0 genome.wustl.edu 37 3 52469715 52469715 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 52469715 52469715 C T SNP SEMA3G ENST00000231721 human ensembl 74_37 -1 known silent c.2253 p.R751 1.000 NULL pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom - no_errors SEMA3G HGNC ENSG00000010319 145 0 0 77 18 18.9474 SEMA3G 0 genome.wustl.edu 37 3 52475046 52475046 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 52475046 52475046 G A SNP SEMA3G ENST00000231721 human ensembl 74_37 -1 known missense c.832 p.R278W 0.997 pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom - no_errors SEMA3G HGNC ENSG00000010319 58 0 0 32 13 28.8889 ACTR8 0 genome.wustl.edu 37 3 53913991 53913991 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 53913991 53913991 C T SNP ACTR8 ENST00000335754 human ensembl 74_37 -1 known missense c.269 p.S90N 0.993 pfam_Actin-related,smart_Actin-related pfam_Actin-related,smart_Actin-related - no_errors ACTR8 HGNC ENSG00000113812 139 0 0 92 21 18.5841 FAM208A 0 genome.wustl.edu 37 3 56657581 56657581 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 56657581 56657581 G A SNP FAM208A ENST00000355628 human ensembl 74_37 -1 known silent c.4314 p.N1438 0.999 NULL pfam_DUF3715 - no_errors FAM208A HGNC ENSG00000163946 73 0 0 39 12 23.5294 APPL1 0 genome.wustl.edu 37 3 57283436 57283436 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 57283436 57283436 G A SNP APPL1 ENST00000288266 human ensembl 74_37 +1 known silent c.912 p.T304 0.764 smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom - no_errors APPL1 HGNC ENSG00000157500 97 0 0 56 26 31.7073 FLNB 0 genome.wustl.edu 37 3 58097960 58097960 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 58097960 58097960 C T SNP FLNB ENST00000295956 human ensembl 74_37 +1 known missense c.2660 p.P887L 0.991 pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like - no_errors FLNB HGNC ENSG00000136068 118 0 0 68 33 32.6733 PXK 0 genome.wustl.edu 37 3 58382815 58382815 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 58382815 58382815 C T SNP PXK ENST00000356151 human ensembl 74_37 +1 known missense c.872 p.A291V 0.997 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom pfam_Phox,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Phox,superfamily_Kinase-like_dom,smart_Phox,pfscan_Phox,pfscan_WH2_dom,pfscan_Prot_kinase_dom - no_errors PXK HGNC ENSG00000168297 129 0 0 114 7 5.78512 PTPRG 0 genome.wustl.edu 37 3 62189010 62189010 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 62189010 62189010 C T SNP PTPRG ENST00000474889 human ensembl 74_37 +1 known missense c.1541 p.T514M 1.000 NULL pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRG HGNC ENSG00000144724 67 0 0 28 10 26.3158 CADPS 0 genome.wustl.edu 37 3 62535607 62535607 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 62535607 62535607 G T SNP CADPS ENST00000383710 human ensembl 74_37 -1 known missense c.1937 p.P646H 1.000 NULL pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors CADPS HGNC ENSG00000163618 110 0 0 72 4 5.26316 PRICKLE2 0 genome.wustl.edu 37 3 64084973 64084973 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 64084973 64084973 G A SNP PRICKLE2 ENST00000295902 human ensembl 74_37 -1 known silent c.2289 p.D763 0.940 NULL pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM - no_errors PRICKLE2 HGNC ENSG00000163637 39 0 0 27 6 18.1818 GRM7 0 genome.wustl.edu 37 3 6903441 6903441 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 6903441 6903441 C T SNP GRM7 ENST00000402647 human ensembl 74_37 +1 known silent c.366 p.F122 1.000 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4 - no_errors GRM7 HGNC ENSG00000196277 61 0 0 23 14 37.8378 MITF 0 genome.wustl.edu 37 3 69987151 69987151 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 69987151 69987151 C T SNP MITF ENST00000448226 human ensembl 74_37 +1 known missense c.533 p.P178L 1.000 NULL pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom - no_errors MITF HGNC ENSG00000187098 84 0 0 56 16 22.2222 ROBO2 0 genome.wustl.edu 37 3 77617524 77617524 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 77617524 77617524 T C SNP ROBO2 ENST00000461745 human ensembl 74_37 +1 known missense c.1910 p.V637A 1.000 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors ROBO2 HGNC ENSG00000185008 129 0 0 84 17 16.8317 ROBO1 0 genome.wustl.edu 37 3 78734947 78734947 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 78734947 78734947 A C SNP ROBO1 ENST00000464233 human ensembl 74_37 -1 known missense c.1291 p.L431V 0.971 pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors ROBO1 HGNC ENSG00000169855 24 0 0 11 11 50 CAV3 0 genome.wustl.edu 37 3 8787245 8787245 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 8787245 8787245 G A SNP CAV3 ENST00000343849 human ensembl 74_37 +1 known missense c.148 p.G50S 1.000 pfam_Caveolin pfam_Caveolin - no_errors CAV3 HGNC ENSG00000182533 47 0 0 30 9 23.0769 MTTP 0 genome.wustl.edu 37 4 100512480 100512480 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 100512480 100512480 C T SNP MTTP ENST00000265517 human ensembl 74_37 +1 known missense c.590 p.A197V 0.001 pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N - no_errors MTTP HGNC ENSG00000138823 61 0 0 30 13 30.2326 TBCK 0 genome.wustl.edu 37 4 107154787 107154787 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 107154787 107154787 G A SNP TBCK ENST00000273980 human ensembl 74_37 -1 known silent c.1470 p.Y490 0.997 pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom - no_errors TBCK HGNC ENSG00000145348 40 0 0 19 11 36.6667 RRH 0 genome.wustl.edu 37 4 110765294 110765294 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 110765294 110765294 G A SNP RRH ENST00000317735 human ensembl 74_37 +1 known missense c.955 p.V319M 0.001 prints_Peropsin pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn - no_errors RRH HGNC ENSG00000180245 120 0 0 78 31 28.4404 EGF 0 genome.wustl.edu 37 4 110866263 110866263 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 110866263 110866263 C T SNP EGF ENST00000265171 human ensembl 74_37 +1 known missense c.772 p.R258C 0.001 pirsf_Pro-epidermal_GF pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt - no_errors EGF HGNC ENSG00000138798 42 0 0 29 8 21.6216 C4orf21 0 genome.wustl.edu 37 4 113544979 113544979 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 113544979 113544979 G A SNP C4orf21 ENST00000505019 human ensembl 74_37 -1 known silent c.156 p.C52 0.290 pfam_DUF2439 pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase - no_errors C4orf21 HGNC ENSG00000138658 31 0 0 12 5 29.4118 ANK2 0 genome.wustl.edu 37 4 114158328 114158328 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 114158328 114158328 G T SNP ANK2 ENST00000357077 human ensembl 74_37 +1 known missense c.669 p.K223N 1.000 superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt - no_errors ANK2 HGNC ENSG00000145362 104 0 0 41 22 34.9206 EXOSC9 0 genome.wustl.edu 37 4 122737549 122737549 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 122737549 122737549 T C SNP EXOSC9 ENST00000379663 human ensembl 74_37 +1 known silent c.1233 p.S411 1.000 NULL pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2 - no_errors EXOSC9 HGNC ENSG00000123737 57 0 0 29 18 38.2979 CTBP1 0 genome.wustl.edu 37 4 1231955 1231955 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 1231955 1231955 G A SNP CTBP1 ENST00000510568 human ensembl 74_37 -1 putative missense c.178 p.R60C 0.000 NULL NULL - no_errors CTBP1 HGNC ENSG00000159692 127 0 0 66 23 25.8427 FAT4 0 genome.wustl.edu 37 4 126336508 126336508 + Silent SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 126336508 126336508 T A SNP FAT4 ENST00000394329 human ensembl 74_37 +1 known silent c.6390 p.G2130 0.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT4 HGNC ENSG00000196159 67 0 0 51 16 23.8806 FAT4 0 genome.wustl.edu 37 4 126336623 126336623 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 126336623 126336623 A G SNP FAT4 ENST00000394329 human ensembl 74_37 +1 known missense c.6505 p.T2169A 0.893 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT4 HGNC ENSG00000196159 127 0 0 74 15 16.8539 MFSD8 0 genome.wustl.edu 37 4 128842780 128842780 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 128842780 128842780 C T SNP MFSD8 ENST00000296468 human ensembl 74_37 -1 known missense c.1249 p.A417T 1.000 superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors MFSD8 HGNC ENSG00000164073 48 0 0 23 13 36.1111 MFSD8 0 genome.wustl.edu 37 4 128863292 128863292 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 128863292 128863292 G A SNP MFSD8 ENST00000296468 human ensembl 74_37 -1 known missense c.461 p.S154L 1.000 pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors MFSD8 HGNC ENSG00000164073 132 0 0 70 17 19.5402 MAEA 0 genome.wustl.edu 37 4 1309205 1309205 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 1309205 1309205 C T SNP MAEA ENST00000303400 human ensembl 74_37 +1 known silent c.273 p.A91 0.001 NULL smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C - no_errors MAEA HGNC ENSG00000090316 89 0 0 44 17 27.8689 MAEA 0 genome.wustl.edu 37 4 1321484 1321484 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 1321484 1321484 G A SNP MAEA ENST00000303400 human ensembl 74_37 +1 known missense c.649 p.A217T 1.000 smart_CRA_dom smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C - no_errors MAEA HGNC ENSG00000090316 57 0 0 29 10 25.641 BOD1L1 0 genome.wustl.edu 37 4 13600863 13600863 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 13600863 13600863 G A SNP BOD1L1 ENST00000040738 human ensembl 74_37 -1 known missense c.7661 p.A2554V 0.001 NULL NULL - no_errors BOD1L1 HGNC ENSG00000038219 20 0 0 11 2 15.3846 BOD1L1 0 genome.wustl.edu 37 4 13604573 13604573 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 13604573 13604573 G T SNP BOD1L1 ENST00000040738 human ensembl 74_37 -1 known silent c.3951 p.T1317 0.011 NULL NULL - no_errors BOD1L1 HGNC ENSG00000038219 89 0 0 53 11 17.1875 SETD7 0 genome.wustl.edu 37 4 140454490 140454490 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 140454490 140454490 G T SNP SETD7 ENST00000406354 human ensembl 74_37 -1 putative missense c.149 p.P50H 0.991 NULL NULL - no_errors SETD7 HGNC ENSG00000145391 23 0 0 8 13 61.9048 TBC1D9 0 genome.wustl.edu 37 4 141598220 141598220 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 141598220 141598220 C T SNP TBC1D9 ENST00000442267 human ensembl 74_37 -1 known missense c.887 p.R296H 1.000 pfam_GRAM,smart_GRAM pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D9 HGNC ENSG00000109436 150 0 0 91 33 26.6129 ANAPC10 0 genome.wustl.edu 37 4 145916685 145916685 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 145916685 145916685 C T SNP ANAPC10 ENST00000309439 human ensembl 74_37 -1 known missense c.398 p.R133H 1.000 pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10 pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10 - no_errors ANAPC10 HGNC ENSG00000164162 96 0 0 55 22 28.5714 ABCE1 0 genome.wustl.edu 37 4 146041302 146041302 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 146041302 146041302 A T SNP ABCE1 ENST00000296577 human ensembl 74_37 +1 known missense c.1141 p.N381Y 1.000 superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E - no_errors ABCE1 HGNC ENSG00000164163 52 0 0 21 11 34.375 ZNF827 0 genome.wustl.edu 37 4 146824250 146824250 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 146824250 146824250 A G SNP ZNF827 ENST00000508784 human ensembl 74_37 -1 known missense c.161 p.L54S 0.999 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF827 HGNC ENSG00000151612 83 0 0 51 13 20.3125 NR3C2 0 genome.wustl.edu 37 4 149356399 149356399 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 149356399 149356399 C A SNP NR3C2 ENST00000355292 human ensembl 74_37 -1 known silent c.1614 p.S538 0.002 NULL pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt - no_errors NR3C2 HGNC ENSG00000151623 75 0 0 41 14 25.4545 SH3D19 0 genome.wustl.edu 37 4 152096013 152096013 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 152096013 152096013 G A SNP SH3D19 ENST00000304527 human ensembl 74_37 -1 known missense c.503 p.P168L 1.000 NULL pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain - no_errors SH3D19 HGNC ENSG00000109686 350 0 0 189 86 31.2727 FBXW7 0 genome.wustl.edu 37 4 153244281 153244281 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 153244281 153244281 C T SNP FBXW7 ENST00000281708 human ensembl 74_37 -1 known missense c.1876 p.A626T 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors FBXW7 HGNC ENSG00000109670 33 0 0 23 8 25.8065 FBXW7 0 genome.wustl.edu 37 4 153258983 153258983 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 153258983 153258983 G A SNP FBXW7 ENST00000281708 human ensembl 74_37 -1 known nonsense c.832 p.R278* 0.997 superfamily_F-box_dom,pfscan_F-box_dom pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors FBXW7 HGNC ENSG00000109670 74 0 0 31 10 24.3902 CD38 0 genome.wustl.edu 37 4 15780067 15780067 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 15780067 15780067 C T SNP CD38 ENST00000226279 human ensembl 74_37 +1 known silent c.30 p.S10 0.033 NULL pfam_ADP-ribosyl_cyclase - no_errors CD38 HGNC ENSG00000004468 155 0 0 73 19 20.6522 FSTL5 0 genome.wustl.edu 37 4 162307362 162307362 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 162307362 162307362 G A SNP FSTL5 ENST00000306100 human ensembl 74_37 -1 known missense c.2081 p.T694M 0.897 NULL pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom - no_errors FSTL5 HGNC ENSG00000168843 78 0 0 59 15 20.2703 DDX60L 0 genome.wustl.edu 37 4 169317201 169317201 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 169317201 169317201 A G SNP DDX60L ENST00000260184 human ensembl 74_37 -1 known missense c.3566 p.L1189P 0.005 superfamily_P-loop_NTPase pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors DDX60L HGNC ENSG00000181381 26 0 0 18 6 25 TACC3 0 genome.wustl.edu 37 4 1730104 1730104 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 1730104 1730104 C T SNP TACC3 ENST00000313288 human ensembl 74_37 +1 known silent c.975 p.G325 0.000 NULL pfam_TACC - no_errors TACC3 HGNC ENSG00000013810 46 0 0 22 10 31.25 GALNTL6 0 genome.wustl.edu 37 4 173734826 173734826 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 173734826 173734826 T A SNP GALNTL6 ENST00000506823 human ensembl 74_37 +1 known missense c.875 p.I292N 1.000 pfam_Glyco_trans_2 pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNTL6 HGNC ENSG00000174473 67 0 0 33 11 25 TENM3 0 genome.wustl.edu 37 4 183714319 183714319 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 183714319 183714319 G A SNP TENM3 ENST00000406950 human ensembl 74_37 +1 known missense c.6494 p.S2165N 0.998 superfamily_Cyt_c-like_dom pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core - no_errors TENM3 HGNC ENSG00000218336 159 0 0 47 35 42.6829 TRAPPC11 0 genome.wustl.edu 37 4 184585065 184585065 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 184585065 184585065 G A SNP TRAPPC11 ENST00000334690 human ensembl 74_37 +1 known silent c.45 p.R15 0.998 NULL pfam_Foie-gras_1,pfam_DUF1683_C - no_errors TRAPPC11 HGNC ENSG00000168538 64 0 0 22 23 51.1111 IRF2 0 genome.wustl.edu 37 4 185350182 185350182 + Nonsense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 185350182 185350182 C A SNP IRF2 ENST00000393593 human ensembl 74_37 -1 known nonsense c.37 p.E13* 1.000 pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom - no_errors IRF2 HGNC ENSG00000168310 99 0 0 37 23 38.3333 ACSL1 0 genome.wustl.edu 37 4 185678331 185678331 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 185678331 185678331 C T SNP ACSL1 ENST00000281455 human ensembl 74_37 -1 known missense c.2045 p.R682Q 0.673 NULL pfam_AMP-dep_Synth/Lig - no_errors ACSL1 HGNC ENSG00000151726 111 0 0 30 22 42.3077 FAT1 0 genome.wustl.edu 37 4 187510153 187510153 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 187510153 187510153 C T SNP FAT1 ENST00000441802 human ensembl 74_37 -1 known missense c.13360 p.E4454K 1.000 NULL pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin - no_errors FAT1 HGNC ENSG00000083857 345 0 0 227 97 29.9383 FAT1 0 genome.wustl.edu 37 4 187524086 187524086 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 187524086 187524086 C T SNP FAT1 ENST00000441802 human ensembl 74_37 -1 known missense c.11453 p.C3818Y 1.000 smart_EG-like_dom,pfscan_EG-like_dom pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin - no_errors FAT1 HGNC ENSG00000083857 85 0 0 44 20 31.25 FAT1 0 genome.wustl.edu 37 4 187557823 187557823 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 187557823 187557823 C T SNP FAT1 ENST00000441802 human ensembl 74_37 -1 known silent c.3888 p.E1296 0.879 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin - no_errors FAT1 HGNC ENSG00000083857 292 0 0 187 45 19.3966 TRIML1 0 genome.wustl.edu 37 4 189064957 189064957 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 189064957 189064957 C T SNP TRIML1 ENST00000507581 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors TRIML1 HGNC ENSG00000184108 197 0 0 105 20 16 WHSC1 0 genome.wustl.edu 37 4 1955098 1955098 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 1955098 1955098 C T SNP WHSC1 ENST00000382891 human ensembl 74_37 +1 known missense c.2185 p.R729C 1.000 smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_RING pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom - no_errors WHSC1 HGNC ENSG00000109685 160 0 0 81 39 32.5 ZCCHC4 0 genome.wustl.edu 37 4 25314435 25314435 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 25314435 25314435 G A SNP ZCCHC4 ENST00000302874 human ensembl 74_37 +1 known missense c.4 p.A2T 1.000 NULL pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase - no_errors ZCCHC4 HGNC ENSG00000168228 210 0 0 102 29 22.1374 ANAPC4 0 genome.wustl.edu 37 4 25419249 25419249 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 25419249 25419249 A C SNP ANAPC4 ENST00000510092 human ensembl 74_37 +1 known missense c.2090 p.Q697P 0.989 pirsf_APC4_metazoa superfamily_WD40_repeat_dom,pirsf_APC4_metazoa - no_errors ANAPC4 HGNC ENSG00000053900 193 1 0.515464 164 11 6.28571 SLC34A2 0 genome.wustl.edu 37 4 25672389 25672389 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 25672389 25672389 A G SNP SLC34A2 ENST00000382051 human ensembl 74_37 +1 known silent c.861 p.A287 0.282 superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt - no_errors SLC34A2 HGNC ENSG00000157765 34 0 0 23 11 32.3529 CCKAR 0 genome.wustl.edu 37 4 26483729 26483729 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 26483729 26483729 T A SNP CCKAR ENST00000295589 human ensembl 74_37 -1 known missense c.818 p.K273M 0.027 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt - no_errors CCKAR HGNC ENSG00000163394 105 0 0 52 11 17.4603 FAM193A 0 genome.wustl.edu 37 4 2664886 2664886 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 2664886 2664886 A T SNP FAM193A ENST00000324666 human ensembl 74_37 +1 known missense c.1077 p.E359D 0.995 NULL NULL - no_errors FAM193A HGNC ENSG00000125386 124 0 0 61 20 24.6914 HTT 0 genome.wustl.edu 37 4 3201628 3201628 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 3201628 3201628 C T SNP HTT ENST00000355072 human ensembl 74_37 +1 known silent c.5538 p.T1846 0.746 NULL pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin - no_errors HTT HGNC ENSG00000197386 58 0 0 28 12 30 ADRA2C 0 genome.wustl.edu 37 4 3768921 3768921 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 3768921 3768921 C T SNP ADRA2C ENST00000330055 human ensembl 74_37 +1 known silent c.588 p.G196 0.901 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2C_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam - no_errors ADRA2C HGNC ENSG00000184160 17 0 0 6 3 33.3333 PDS5A 0 genome.wustl.edu 37 4 39921982 39921982 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 39921982 39921982 A C SNP PDS5A ENST00000303538 human ensembl 74_37 -1 known missense c.692 p.L231R 0.328 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors PDS5A HGNC ENSG00000121892 61 0 0 37 16 30.1887 RBM47 0 genome.wustl.edu 37 4 40440364 40440364 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 40440364 40440364 C T SNP RBM47 ENST00000295971 human ensembl 74_37 -1 known missense c.547 p.V183I 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac - no_errors RBM47 HGNC ENSG00000163694 136 0 0 59 24 28.9157 ZNF721 0 genome.wustl.edu 37 4 436257 436257 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 436257 436257 G T SNP ZNF721 ENST00000511833 human ensembl 74_37 -1 known missense c.1999 p.Q667K 0.233 pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF721 HGNC ENSG00000182903 124 0 0 94 14 12.963 ZNF721 0 genome.wustl.edu 37 4 436261 436261 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 436261 436261 T C SNP ZNF721 ENST00000511833 human ensembl 74_37 -1 known silent c.1995 p.G665 0.995 pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF721 HGNC ENSG00000182903 130 0 0 100 13 11.5044 ZNF721 0 genome.wustl.edu 37 4 466480 466480 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 466480 466480 G A SNP ZNF721 ENST00000515578 human ensembl 74_37 -1 known missense c.14 p.T5I 0.636 pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box - no_errors ZNF721 HGNC ENSG00000182903 84 0 0 50 4 7.40741 MSX1 0 genome.wustl.edu 37 4 4864851 4864851 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 4864851 4864851 G A SNP MSX1 ENST00000382723 human ensembl 74_37 +1 known missense c.893 p.S298N 1.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa - no_errors MSX1 HGNC ENSG00000163132 21 0 0 8 5 38.4615 FIP1L1 0 genome.wustl.edu 37 4 54319243 54319243 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 54319243 54319243 G A SNP FIP1L1 ENST00000337488 human ensembl 74_37 +1 known missense c.1442 p.R481H 1.000 NULL pfam_Fip1 - no_errors FIP1L1 HGNC ENSG00000145216 70 0 0 47 11 18.9655 SRP72 0 genome.wustl.edu 37 4 57335842 57335842 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 57335842 57335842 G A SNP SRP72 ENST00000342756 human ensembl 74_37 +1 known missense c.133 p.V45I 1.000 NULL pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors SRP72 HGNC ENSG00000174780 109 0 0 62 17 21.519 C4orf50 0 genome.wustl.edu 37 4 5961245 5961245 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 5961245 5961245 A C SNP C4orf50 ENST00000531445 human ensembl 74_37 -1 known missense c.2110 p.C704G 0.000 NULL NULL - no_errors C4orf50 HGNC ENSG00000181215 81 0 0 30 11 26.8293 EPHA5 0 genome.wustl.edu 37 4 66535318 66535318 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 66535318 66535318 G A SNP EPHA5 ENST00000273854 human ensembl 74_37 -1 known missense c.143 p.A48V 1.000 pirsf_Tyr_kinase_ephrin_rcpt pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors EPHA5 HGNC ENSG00000145242 43 0 0 19 3 13.6364 UBA6-AS1 0 genome.wustl.edu 37 4 68928451 68928451 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 68928451 68928451 T C SNP UBA6-AS1 ENST00000500538 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors UBA6-AS1 HGNC ENSG00000248049 57 0 0 23 19 45.2381 UGT2B10 0 genome.wustl.edu 37 4 69681741 69681741 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 69681741 69681741 G A SNP UGT2B10 ENST00000265403 human ensembl 74_37 +1 known missense c.4 p.A2T 0.018 NULL pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C - no_errors UGT2B10 HGNC ENSG00000109181 107 0 0 53 20 27.3973 ENAM 0 genome.wustl.edu 37 4 71510476 71510476 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 71510476 71510476 C G SNP ENAM ENST00000396073 human ensembl 74_37 +1 known missense c.3333 p.D1111E 0.000 NULL NULL - no_errors ENAM HGNC ENSG00000132464 76 0 0 56 15 21.1268 IGJ 0 genome.wustl.edu 37 4 71527831 71527831 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 71527831 71527831 C T SNP IGJ ENST00000543780 human ensembl 74_37 -1 known missense c.214 p.V72M 0.999 NULL NULL - no_errors IGJ HGNC ENSG00000132465 134 0 0 75 25 25 SLC4A4 0 genome.wustl.edu 37 4 72222756 72222756 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 72222756 72222756 C T SNP SLC4A4 ENST00000425175 human ensembl 74_37 +1 known silent c.582 p.G194 1.000 pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk - no_errors SLC4A4 HGNC ENSG00000080493 97 0 0 65 4 5.7971 ANKRD17 0 genome.wustl.edu 37 4 73962877 73962877 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 73962877 73962877 G A SNP ANKRD17 ENST00000358602 human ensembl 74_37 -1 known missense c.5134 p.R1712C 1.000 NULL pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt - no_errors ANKRD17 HGNC ENSG00000132466 309 0 0 175 47 21.1712 ANKRD17 0 genome.wustl.edu 37 4 74124065 74124065 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 74124065 74124065 G A SNP ANKRD17 ENST00000358602 human ensembl 74_37 -1 known silent c.321 p.G107 0.025 NULL pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt - no_errors ANKRD17 HGNC ENSG00000132466 89 0 0 36 10 21.7391 PPEF2 0 genome.wustl.edu 37 4 76785641 76785641 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 76785641 76785641 G A SNP PPEF2 ENST00000286719 human ensembl 74_37 -1 known nonsense c.1960 p.R654* 1.000 pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_hand_dom pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom - no_errors PPEF2 HGNC ENSG00000156194 86 0 0 30 20 40 BMP3 0 genome.wustl.edu 37 4 81967637 81967637 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 81967637 81967637 G T SNP BMP3 ENST00000282701 human ensembl 74_37 +1 known missense c.1062 p.Q354H 1.000 pirsf_BMP3/GDF10 pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10 - no_errors BMP3 HGNC ENSG00000152785 47 0 0 33 11 25 HTRA3 0 genome.wustl.edu 37 4 8293207 8293207 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 8293207 8293207 C T SNP HTRA3 ENST00000307358 human ensembl 74_37 +1 known silent c.819 p.I273 1.000 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C pfam_Peptidase_S1,pfam_Kazal_dom,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C - no_errors HTRA3 HGNC ENSG00000170801 57 0 0 33 16 32.6531 HPSE 0 genome.wustl.edu 37 4 84231184 84231184 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 84231184 84231184 T C SNP HPSE ENST00000311412 human ensembl 74_37 -1 known missense c.890 p.H297R 1.000 pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF - no_errors HPSE HGNC ENSG00000173083 141 0 0 89 17 16.0377 FAM175A 0 genome.wustl.edu 37 4 84384689 84384689 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 84384689 84384689 G A SNP FAM175A ENST00000321945 human ensembl 74_37 -1 known nonsense c.754 p.R252* 0.005 prints_FAM175_BRISC_cplx_Abro1_su prints_FAM175_BRCA1-A_cplx_Abraxas_su,prints_FAM175,prints_FAM175_BRISC_cplx_Abro1_su - no_errors FAM175A HGNC ENSG00000163322 79 0 0 42 15 26.3158 HSD17B13 0 genome.wustl.edu 37 4 88243791 88243791 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 88243791 88243791 A T SNP HSD17B13 ENST00000328546 human ensembl 74_37 -1 known missense c.203 p.I68N 1.000 pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR - no_errors HSD17B13 HGNC ENSG00000170509 94 0 0 69 27 28.125 HSD17B11 0 genome.wustl.edu 37 4 88293942 88293942 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 88293942 88293942 A G SNP HSD17B11 ENST00000358290 human ensembl 74_37 -1 known missense c.476 p.M159T 1.000 pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR - no_errors HSD17B11 HGNC ENSG00000198189 70 0 0 49 4 7.54717 ABCG2 0 genome.wustl.edu 37 4 89036197 89036197 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 89036197 89036197 C T SNP ABCG2 ENST00000237612 human ensembl 74_37 -1 known silent c.855 p.E285 0.997 pfscan_ABC_transporter-like pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCG2 HGNC ENSG00000118777 57 0 0 23 5 17.8571 TMEM175 0 genome.wustl.edu 37 4 944254 944254 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 944254 944254 G A SNP TMEM175 ENST00000264771 human ensembl 74_37 +1 known missense c.238 p.V80I 1.000 pfam_DUF1211_TMEM175 pfam_DUF1211_TMEM175 - no_errors TMEM175 HGNC ENSG00000127419 112 0 0 49 26 34.6667 SRP19 0 genome.wustl.edu 37 5 112203173 112203173 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 112203173 112203173 C G SNP SRP19 ENST00000505459 human ensembl 74_37 +1 known missense c.374 p.A125G 1.000 NULL pfam_Signal_recog_particle_SRP19,superfamily_Signal_recog_particle_SRP19 - no_errors SRP19 HGNC ENSG00000153037 52 0 0 32 5 13.5135 ZNF608 0 genome.wustl.edu 37 5 124036756 124036756 + Silent SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 124036756 124036756 A C SNP ZNF608 ENST00000306315 human ensembl 74_37 -1 known silent c.1113 p.P371 0.978 NULL NULL - no_errors ZNF608 HGNC ENSG00000168916 101 0 0 59 25 29.7619 ADAMTS19 0 genome.wustl.edu 37 5 129015539 129015539 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 129015539 129015539 C T SNP ADAMTS19 ENST00000274487 human ensembl 74_37 +1 known silent c.2571 p.T857 0.206 pfam_ADAM_spacer1 pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS19 HGNC ENSG00000145808 79 0 0 35 21 37.5 SEPT8 0 genome.wustl.edu 37 5 132100012 132100012 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 132100012 132100012 C T SNP SEPT8 ENST00000378719 human ensembl 74_37 -1 known missense c.251 p.R84Q 1.000 pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin - no_errors SEPT8 HGNC ENSG00000164402 68 0 0 39 9 18.75 SEC24A 0 genome.wustl.edu 37 5 134010443 134010443 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 134010443 134010443 G A SNP SEC24A ENST00000398844 human ensembl 74_37 +1 known missense c.956 p.S319N 1.000 NULL pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom - no_errors SEC24A HGNC ENSG00000113615 42 0 0 24 15 38.4615 CAMLG 0 genome.wustl.edu 37 5 134077003 134077003 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 134077003 134077003 G A SNP CAMLG ENST00000297156 human ensembl 74_37 +1 known silent c.423 p.A141 0.000 pirsf_Ca_signal-mod_cyclophilin_lig pirsf_Ca_signal-mod_cyclophilin_lig - no_errors CAMLG HGNC ENSG00000164615 75 0 0 24 10 29.4118 CLPTM1L 0 genome.wustl.edu 37 5 1344507 1344507 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 1344507 1344507 G A SNP CLPTM1L ENST00000320895 human ensembl 74_37 -1 known silent c.222 p.V74 0.999 pfam_CLPTM1 pfam_CLPTM1 - no_errors CLPTM1L HGNC ENSG00000049656 50 0 0 28 10 26.3158 KLHL3 0 genome.wustl.edu 37 5 136974736 136974736 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 136974736 136974736 C T SNP KLHL3 ENST00000309755 human ensembl 74_37 -1 known silent c.1125 p.T375 0.494 pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like - no_errors KLHL3 HGNC ENSG00000146021 50 0 0 29 9 23.6842 DNAH5 0 genome.wustl.edu 37 5 13759008 13759008 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 13759008 13759008 C T SNP DNAH5 ENST00000265104 human ensembl 74_37 -1 known missense c.10366 p.A3456T 0.984 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH5 HGNC ENSG00000039139 184 0 0 115 38 24.8366 NRG2 0 genome.wustl.edu 37 5 139251400 139251400 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 139251400 139251400 C T SNP NRG2 ENST00000545385 human ensembl 74_37 -1 known missense c.1018 p.G340R 1.000 NULL pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom - no_errors NRG2 HGNC ENSG00000158458 101 0 0 32 23 41.8182 SRA1 0 genome.wustl.edu 37 5 139936816 139936816 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 139936816 139936816 A T SNP SRA1 ENST00000336283 human ensembl 74_37 -1 known missense c.103 p.Y35N 0.954 NULL pfam_SRA1-protein/COPII_Sec31 - no_errors SRA1 HGNC ENSG00000213523 90 0 0 60 4 6.25 APBB3 0 genome.wustl.edu 37 5 139941484 139941484 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 139941484 139941484 G A SNP APBB3 ENST00000467078 human ensembl 74_37 -1 known silent c.723 p.S241 0.474 NULL pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom - no_errors APBB3 HGNC ENSG00000113108 38 0 0 16 8 33.3333 PCDHA1 0 genome.wustl.edu 37 5 140167916 140167916 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140167916 140167916 C T SNP PCDHA1 ENST00000504120 human ensembl 74_37 +1 known missense c.2041 p.R681W 0.002 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA1 HGNC ENSG00000204970 105 0 0 43 15 25.8621 PCDHA3 0 genome.wustl.edu 37 5 140181497 140181497 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140181497 140181497 G A SNP PCDHA3 ENST00000522353 human ensembl 74_37 +1 known missense c.715 p.A239T 0.990 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA3 HGNC ENSG00000255408 62 0 0 25 5 16.6667 PCDHA4 0 genome.wustl.edu 37 5 140188299 140188299 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140188299 140188299 G A SNP PCDHA4 ENST00000530339 human ensembl 74_37 +1 known silent c.1527 p.S509 0.733 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA4 HGNC ENSG00000204967 177 0 0 85 32 27.3504 PCDHA7 0 genome.wustl.edu 37 5 140216075 140216075 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140216075 140216075 G A SNP PCDHA7 ENST00000525929 human ensembl 74_37 +1 known missense c.2107 p.A703T 1.000 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA7 HGNC ENSG00000204963 169 0 0 95 35 26.9231 PCDHA11 0 genome.wustl.edu 37 5 140248773 140248773 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140248773 140248773 G A SNP PCDHA11 ENST00000398640 human ensembl 74_37 +1 known missense c.85 p.G29S 0.323 pfam_Cadherin_N,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA11 HGNC ENSG00000249158 102 0 0 56 10 15.1515 PCDHA13 0 genome.wustl.edu 37 5 140262038 140262038 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140262038 140262038 G A SNP PCDHA13 ENST00000289272 human ensembl 74_37 +1 known missense c.185 p.R62H 0.975 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA13 HGNC ENSG00000239389 161 0 0 49 38 43.6782 PCDHB1 0 genome.wustl.edu 37 5 140431715 140431715 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140431715 140431715 G A SNP PCDHB1 ENST00000306549 human ensembl 74_37 +1 known silent c.660 p.P220 0.659 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB1 HGNC ENSG00000171815 16 0 0 9 5 35.7143 PCDHB2 0 genome.wustl.edu 37 5 140476009 140476009 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140476009 140476009 C T SNP PCDHB2 ENST00000194155 human ensembl 74_37 +1 known silent c.1635 p.S545 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB2 HGNC ENSG00000112852 91 0 0 40 8 16.6667 PCDHB3 0 genome.wustl.edu 37 5 140482006 140482006 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140482006 140482006 G A SNP PCDHB3 ENST00000231130 human ensembl 74_37 +1 known silent c.1773 p.A591 0.996 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB3 HGNC ENSG00000113205 139 0 0 82 13 13.6842 PCDHB5 0 genome.wustl.edu 37 5 140516916 140516916 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140516916 140516916 G A SNP PCDHB5 ENST00000231134 human ensembl 74_37 +1 known missense c.1900 p.A634T 0.555 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB5 HGNC ENSG00000113209 94 0 0 46 20 30.303 PCDHB12 0 genome.wustl.edu 37 5 140588663 140588663 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140588663 140588663 C T SNP PCDHB12 ENST00000239450 human ensembl 74_37 +1 known missense c.184 p.R62W 0.017 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB12 HGNC ENSG00000120328 161 0 0 61 34 35.7895 PCDHB12 0 genome.wustl.edu 37 5 140589450 140589450 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140589450 140589450 G T SNP PCDHB12 ENST00000239450 human ensembl 74_37 +1 known missense c.971 p.G324V 0.772 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB12 HGNC ENSG00000120328 78 0 0 52 11 17.4603 PCDHGA6 0 genome.wustl.edu 37 5 140754671 140754671 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140754671 140754671 A G SNP PCDHGA6 ENST00000517434 human ensembl 74_37 +1 known missense c.1021 p.N341D 1.000 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA6 HGNC ENSG00000253731 226 0 0 117 49 29.5181 PCDHGA9 0 genome.wustl.edu 37 5 140783640 140783640 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140783640 140783640 G A SNP PCDHGA9 ENST00000573521 human ensembl 74_37 +1 known missense c.1121 p.R374Q 0.011 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA9 HGNC ENSG00000261934 26 0 0 11 6 35.2941 PCDHGB7 0 genome.wustl.edu 37 5 140799286 140799286 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140799286 140799286 G A SNP PCDHGB7 ENST00000398594 human ensembl 74_37 +1 known silent c.1860 p.G620 0.945 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGB7 HGNC ENSG00000254122 129 0 0 70 17 19.5402 ARAP3 0 genome.wustl.edu 37 5 141050145 141050145 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 141050145 141050145 C T SNP ARAP3 ENST00000239440 human ensembl 74_37 -1 known missense c.2041 p.G681S 0.996 smart_Pleckstrin_homology pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP - no_errors ARAP3 HGNC ENSG00000120318 92 0 0 48 15 23.8095 TRIO 0 genome.wustl.edu 37 5 14461390 14461390 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 14461390 14461390 G A SNP TRIO ENST00000344204 human ensembl 74_37 +1 known silent c.5466 p.A1822 0.000 NULL pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors TRIO HGNC ENSG00000038382 30 0 0 10 5 33.3333 TRIO 0 genome.wustl.edu 37 5 14498630 14498630 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 14498630 14498630 A G SNP TRIO ENST00000344204 human ensembl 74_37 +1 known missense c.8213 p.D2738G 1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors TRIO HGNC ENSG00000038382 33 0 0 15 6 28.5714 TRIO 0 genome.wustl.edu 37 5 14508455 14508455 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 14508455 14508455 G A SNP TRIO ENST00000344204 human ensembl 74_37 +1 known missense c.9218 p.R3073H 1.000 superfamily_Kinase-like_dom pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain - no_errors TRIO HGNC ENSG00000038382 105 0 0 49 23 31.9444 FBXO38 0 genome.wustl.edu 37 5 147774406 147774406 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 147774406 147774406 G A SNP FBXO38 ENST00000340253 human ensembl 74_37 +1 known missense c.67 p.A23T 0.015 NULL superfamily_F-box_dom - no_errors FBXO38 HGNC ENSG00000145868 107 0 0 65 22 25.2874 AFAP1L1 0 genome.wustl.edu 37 5 148685930 148685930 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 148685930 148685930 C T SNP AFAP1L1 ENST00000296721 human ensembl 74_37 +1 known silent c.498 p.Y166 1.000 NULL pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors AFAP1L1 HGNC ENSG00000157510 30 0 0 28 6 17.6471 PDGFRB 0 genome.wustl.edu 37 5 149497347 149497347 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 149497347 149497347 G A SNP PDGFRB ENST00000261799 human ensembl 74_37 -1 known missense c.2971 p.R991C 0.996 pirsf_Tyr_kinase_CSF1/PDGF_rcpt pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors PDGFRB HGNC ENSG00000113721 45 0 0 15 13 46.4286 SYNPO 0 genome.wustl.edu 37 5 150029294 150029294 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 150029294 150029294 G A SNP SYNPO ENST00000394243 human ensembl 74_37 +1 known missense c.2189 p.R730H 1.000 NULL NULL - no_errors SYNPO HGNC ENSG00000171992 82 0 0 50 21 29.5775 NMUR2 0 genome.wustl.edu 37 5 151784174 151784174 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 151784174 151784174 G A SNP NMUR2 ENST00000255262 human ensembl 74_37 -1 known silent c.501 p.L167 0.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn - no_errors NMUR2 HGNC ENSG00000132911 70 0 0 32 11 25.5814 LARP1 0 genome.wustl.edu 37 5 154092575 154092575 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 154092575 154092575 C T SNP LARP1 ENST00000336314 human ensembl 74_37 +1 known silent c.90 p.G30 0.984 NULL pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd - no_errors LARP1 HGNC ENSG00000155506 67 0 0 28 15 34.8837 FBXL7 0 genome.wustl.edu 37 5 15616143 15616143 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 15616143 15616143 C T SNP FBXL7 ENST00000504595 human ensembl 74_37 +1 known missense c.89 p.T30M 1.000 NULL pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom - no_errors FBXL7 HGNC ENSG00000183580 48 0 0 23 8 25.8065 HMMR 0 genome.wustl.edu 37 5 162910330 162910330 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 162910330 162910330 G A SNP HMMR ENST00000393915 human ensembl 74_37 +1 known missense c.1742 p.R581H 1.000 NULL NULL - no_errors HMMR HGNC ENSG00000072571 56 0 0 27 16 37.2093 NKX2-5 0 genome.wustl.edu 37 5 172661804 172661804 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 172661804 172661804 G A SNP NKX2-5 ENST00000329198 human ensembl 74_37 -1 known missense c.283 p.R95C 0.600 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa - no_errors NKX2-5 HGNC ENSG00000183072 32 0 0 23 9 28.125 CLTB 0 genome.wustl.edu 37 5 175819790 175819790 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 175819790 175819790 C T SNP CLTB ENST00000310418 human ensembl 74_37 -1 known silent c.675 p.T225 0.547 pfam_Clathrin_L-chain pfam_Clathrin_L-chain,superfamily_RuBisCO_lsu_C - no_errors CLTB HGNC ENSG00000175416 122 0 0 60 27 31.0345 GPRIN1 0 genome.wustl.edu 37 5 176023872 176023872 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 176023872 176023872 G A SNP GPRIN1 ENST00000303991 human ensembl 74_37 -1 known silent c.2964 p.R988 0.988 NULL NULL - no_errors GPRIN1 HGNC ENSG00000169258 30 0 0 7 5 41.6667 MIR4281 0 genome.wustl.edu 37 5 176056501 176056501 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 176056501 176056501 C T SNP MIR4281 ENST00000580852 human ensembl 74_37 -1 known rna NULL NULL 0.001 - - - no_errors MIR4281 HGNC ENSG00000266329 35 0 0 13 8 38.0952 SNCB 0 genome.wustl.edu 37 5 176056536 176056536 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 176056536 176056536 G A SNP SNCB ENST00000310112 human ensembl 74_37 -1 known silent c.120 p.V40 0.995 pfam_Synuclein,prints_Synuclein pfam_Synuclein,prints_Synuclein,prints_Synuclein_beta - no_errors SNCB HGNC ENSG00000074317 37 0 0 28 12 30 EIF4E1B 0 genome.wustl.edu 37 5 176070213 176070213 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 176070213 176070213 C T SNP EIF4E1B ENST00000318682 human ensembl 74_37 +1 known missense c.146 p.A49V 0.004 superfamily_TIF_eIF4e-like_dom pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom - no_errors EIF4E1B HGNC ENSG00000175766 94 0 0 47 6 11.3208 UIMC1 0 genome.wustl.edu 37 5 176332464 176332464 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 176332464 176332464 C T SNP UIMC1 ENST00000377219 human ensembl 74_37 -1 known missense c.1982 p.G661D 1.000 NULL smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif - no_errors UIMC1 HGNC ENSG00000087206 66 0 0 41 16 28.0702 NSD1 0 genome.wustl.edu 37 5 176694686 176694686 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 176694686 176694686 G T SNP NSD1 ENST00000439151 human ensembl 74_37 +1 known missense c.5270 p.R1757M 1.000 pfam_PWWP_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger - no_errors NSD1 HGNC ENSG00000165671 138 0 0 50 20 28.5714 RUFY1 0 genome.wustl.edu 37 5 179012795 179012795 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 179012795 179012795 A G SNP RUFY1 ENST00000319449 human ensembl 74_37 +1 known splice_site c.957-2 e8-2 1.000 - - - no_errors RUFY1 HGNC ENSG00000176783 103 0 0 64 4 5.88235 SQSTM1 0 genome.wustl.edu 37 5 179250039 179250039 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 179250039 179250039 G A SNP SQSTM1 ENST00000389805 human ensembl 74_37 +1 known missense c.287 p.R96Q 1.000 pfam_OPR_PB1,smart_OPR_PB1 pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ - no_errors SQSTM1 HGNC ENSG00000161011 40 0 0 22 9 29.0323 FLT4 0 genome.wustl.edu 37 5 180056351 180056351 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 180056351 180056351 T C SNP FLT4 ENST00000261937 human ensembl 74_37 -1 known missense c.893 p.H298R 1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt - no_errors FLT4 HGNC ENSG00000037280 100 0 0 42 23 35.3846 BTNL3 0 genome.wustl.edu 37 5 180432603 180432603 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 180432603 180432603 T C SNP BTNL3 ENST00000342868 human ensembl 74_37 +1 known missense c.1132 p.W378R 0.997 pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin - no_errors BTNL3 HGNC ENSG00000168903 93 0 0 49 20 28.9855 TRIM7 0 genome.wustl.edu 37 5 180622451 180622451 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 180622451 180622451 G A SNP TRIM7 ENST00000274773 human ensembl 74_37 -1 known silent c.1251 p.S417 0.816 pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata - no_errors TRIM7 HGNC ENSG00000146054 20 0 0 4 3 42.8571 IRX2 0 genome.wustl.edu 37 5 2749765 2749765 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 2749765 2749765 A G SNP IRX2 ENST00000302057 human ensembl 74_37 -1 known missense c.386 p.L129P 0.999 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom - no_errors IRX2 HGNC ENSG00000170561 121 0 0 38 21 35.5932 ADAMTS12 0 genome.wustl.edu 37 5 33576770 33576770 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 33576770 33576770 C T SNP ADAMTS12 ENST00000504830 human ensembl 74_37 -1 known missense c.3361 p.A1121T 0.001 NULL pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS12 HGNC ENSG00000151388 82 0 0 66 6 8.33333 IRX1 0 genome.wustl.edu 37 5 3596380 3596380 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 3596380 3596380 C T SNP IRX1 ENST00000302006 human ensembl 74_37 +1 known missense c.161 p.A54V 0.960 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom - no_errors IRX1 HGNC ENSG00000170549 12 0 0 2 2 50 NIPBL 0 genome.wustl.edu 37 5 37022190 37022190 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 37022190 37022190 G A SNP NIPBL ENST00000282516 human ensembl 74_37 +1 known missense c.5366 p.R1789Q 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors NIPBL HGNC ENSG00000164190 53 0 0 30 10 25 RICTOR 0 genome.wustl.edu 37 5 38968099 38968099 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 38968099 38968099 G A SNP RICTOR ENST00000296782 human ensembl 74_37 -1 known missense c.1006 p.R336C 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors RICTOR HGNC ENSG00000164327 59 0 0 50 8 13.7931 MROH2B 0 genome.wustl.edu 37 5 41061745 41061745 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 41061745 41061745 C T SNP MROH2B ENST00000399564 human ensembl 74_37 -1 known missense c.542 p.R181Q 0.978 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors MROH2B HGNC ENSG00000171495 128 0 0 69 29 29.5918 SLC9A3 0 genome.wustl.edu 37 5 480034 480034 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 480034 480034 G A SNP SLC9A3 ENST00000264938 human ensembl 74_37 -1 known missense c.1564 p.R522W 0.047 tigrfam_NaH_exchanger pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger - no_errors SLC9A3 HGNC ENSG00000066230 132 0 0 58 34 36.9565 ADAMTS16 0 genome.wustl.edu 37 5 5239326 5239326 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 5239326 5239326 C T SNP ADAMTS16 ENST00000274181 human ensembl 74_37 +1 known silent c.2217 p.N739 0.964 prints_Peptidase_M12B_ADAM-TS pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS16 HGNC ENSG00000145536 201 0 0 110 61 35.6725 KIAA0947 0 genome.wustl.edu 37 5 5466527 5466527 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 5466527 5466527 C T SNP KIAA0947 ENST00000296564 human ensembl 74_37 +1 known silent c.5973 p.H1991 0.255 NULL superfamily_Vitellinogen_superhlx - no_errors KIAA0947 HGNC ENSG00000164151 41 0 0 25 10 28.5714 MAP3K1 0 genome.wustl.edu 37 5 56179352 56179352 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 56179352 56179352 A G SNP MAP3K1 ENST00000399503 human ensembl 74_37 +1 novel splice_site c.3667-2 e15-2 0.998 - - - no_errors MAP3K1 HGNC ENSG00000095015 40 0 0 30 9 23.0769 GPBP1 0 genome.wustl.edu 37 5 56531795 56531795 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 56531795 56531795 G A SNP GPBP1 ENST00000424459 human ensembl 74_37 +1 known silent c.414 p.P138 0.854 NULL NULL - no_errors GPBP1 HGNC ENSG00000062194 87 0 0 53 17 24.2857 FLJ33360 0 genome.wustl.edu 37 5 6337327 6337327 + RNA SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 6337327 6337327 G T SNP FLJ33360 ENST00000507444 human ensembl 74_37 -1 known rna NULL NULL 0.020 - - - no_errors CTD-2324F15.2 Clone_based_vega_gene ENSG00000250490 131 0 0 68 25 26.8817 TRIM23 0 genome.wustl.edu 37 5 64909976 64909976 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 64909976 64909976 C T SNP TRIM23 ENST00000231524 human ensembl 74_37 -1 known silent c.315 p.G105 0.990 NULL pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,superfamily_P-loop_NTPase,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors TRIM23 HGNC ENSG00000113595 130 0 0 69 29 29.5918 PAPD7 0 genome.wustl.edu 37 5 6751166 6751166 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 6751166 6751166 G A SNP PAPD7 ENST00000230859 human ensembl 74_37 +1 known silent c.1125 p.P375 0.141 NULL pfam_PAP_assoc,pfam_Nucleotidyltransferase - no_errors PAPD7 HGNC ENSG00000112941 140 0 0 89 26 22.6087 MAP1B 0 genome.wustl.edu 37 5 71494147 71494147 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 71494147 71494147 G A SNP MAP1B ENST00000296755 human ensembl 74_37 +1 known silent c.4965 p.E1655 1.000 NULL pfam_MAP1B_neuraxin - no_errors MAP1B HGNC ENSG00000131711 92 0 0 57 23 28.75 ZNF366 0 genome.wustl.edu 37 5 71739823 71739823 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 71739823 71739823 C A SNP ZNF366 ENST00000318442 human ensembl 74_37 -1 known missense c.1995 p.E665D 0.001 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF366 HGNC ENSG00000178175 277 0 0 151 63 29.4393 ZNF366 0 genome.wustl.edu 37 5 71756222 71756222 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 71756222 71756222 C T SNP ZNF366 ENST00000318442 human ensembl 74_37 -1 known missense c.1102 p.V368M 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF366 HGNC ENSG00000178175 65 0 0 36 8 18.1818 ADCY2 0 genome.wustl.edu 37 5 7396481 7396481 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 7396481 7396481 C T SNP ADCY2 ENST00000338316 human ensembl 74_37 +1 known silent c.72 p.D24 0.030 NULL pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY2 HGNC ENSG00000078295 32 0 0 20 8 28.5714 POLK 0 genome.wustl.edu 37 5 74892817 74892817 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 74892817 74892817 T C SNP POLK ENST00000241436 human ensembl 74_37 +1 known missense c.2299 p.Y767H 0.000 NULL pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N - no_errors POLK HGNC ENSG00000122008 98 0 0 61 8 11.5942 IQGAP2 0 genome.wustl.edu 37 5 75993813 75993813 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 75993813 75993813 A G SNP IQGAP2 ENST00000274364 human ensembl 74_37 +1 known missense c.4208 p.D1403G 1.000 pfam_RasGAP_C pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP - no_errors IQGAP2 HGNC ENSG00000145703 19 0 0 12 3 20 F2R 0 genome.wustl.edu 37 5 76029169 76029169 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 76029169 76029169 C T SNP F2R ENST00000319211 human ensembl 74_37 +1 known silent c.1119 p.Y373 0.916 prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt - no_errors F2R HGNC ENSG00000181104 121 0 0 68 40 37.037 PAPD4 0 genome.wustl.edu 37 5 78919302 78919302 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 78919302 78919302 C T SNP PAPD4 ENST00000296783 human ensembl 74_37 +1 known missense c.455 p.A152V 1.000 NULL pfam_PAP_assoc - no_errors PAPD4 HGNC ENSG00000164329 55 0 0 29 4 12.1212 CMYA5 0 genome.wustl.edu 37 5 79035006 79035006 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 79035006 79035006 G A SNP CMYA5 ENST00000446378 human ensembl 74_37 +1 known missense c.10418 p.S3473N 0.791 NULL pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3 - no_errors CMYA5 HGNC ENSG00000164309 22 0 0 11 5 31.25 VCAN 0 genome.wustl.edu 37 5 82815967 82815967 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 82815967 82815967 T C SNP VCAN ENST00000265077 human ensembl 74_37 +1 known silent c.1842 p.N614 0.001 NULL pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link - no_errors VCAN HGNC ENSG00000038427 162 0 0 76 36 32.1429 CHD1 0 genome.wustl.edu 37 5 98221294 98221294 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 98221294 98221294 A G SNP CHD1 ENST00000284049 human ensembl 74_37 -1 known silent c.2556 p.A852 0.982 pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD1 HGNC ENSG00000153922 79 0 0 36 17 32.0755 SIM1 0 genome.wustl.edu 37 6 100838492 100838492 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 100838492 100838492 T C SNP SIM1 ENST00000262901 human ensembl 74_37 -1 known missense c.2046 p.I682M 1.000 NULL pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom - no_errors SIM1 HGNC ENSG00000112246 76 0 0 56 3 5.08475 SIM1 0 genome.wustl.edu 37 6 100895235 100895235 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 100895235 100895235 C T SNP SIM1 ENST00000262901 human ensembl 74_37 -1 known missense c.907 p.G303S 1.000 pfam_PAS_fold_3,superfamily_PAS,smart_PAC pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom - no_errors SIM1 HGNC ENSG00000112246 70 0 0 34 18 34.6154 ATG5 0 genome.wustl.edu 37 6 106649993 106649993 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 106649993 106649993 G A SNP ATG5 ENST00000475645 human ensembl 74_37 -1 known rna NULL NULL 0.002 - - - no_errors ATG5 HGNC ENSG00000057663 29 0 0 15 13 46.4286 GPR6 0 genome.wustl.edu 37 6 110300686 110300686 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 110300686 110300686 G A SNP GPR6 ENST00000414000 human ensembl 74_37 +1 known missense c.416 p.G139D 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn - no_errors GPR6 HGNC ENSG00000146360 173 0 0 110 41 27.1523 DDO 0 genome.wustl.edu 37 6 110726062 110726062 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 110726062 110726062 T C SNP DDO ENST00000368924 human ensembl 74_37 -1 known missense c.457 p.K153E 0.903 pfam_FAD-dep_OxRdtase pfam_FAD-dep_OxRdtase - no_errors DDO HGNC ENSG00000203797 56 0 0 34 8 19.0476 SLC16A10 0 genome.wustl.edu 37 6 111493979 111493979 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 111493979 111493979 G A SNP SLC16A10 ENST00000368851 human ensembl 74_37 +1 known missense c.425 p.R142Q 1.000 pfam_MFS,superfamily_MFS_dom_general_subst_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC16A10 HGNC ENSG00000112394 114 0 0 77 25 24.5098 ROS1 0 genome.wustl.edu 37 6 117681166 117681166 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 117681166 117681166 G T SNP ROS1 ENST00000368508 human ensembl 74_37 -1 known missense c.3454 p.P1152T 0.485 superfamily_Fibronectin_type3 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors ROS1 HGNC ENSG00000047936 31 0 0 10 5 33.3333 HIVEP1 0 genome.wustl.edu 37 6 12122644 12122644 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 12122644 12122644 C T SNP HIVEP1 ENST00000379388 human ensembl 74_37 +1 known silent c.2616 p.G872 0.316 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors HIVEP1 HGNC ENSG00000095951 101 0 0 49 18 26.8657 HIVEP1 0 genome.wustl.edu 37 6 12125941 12125941 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 12125941 12125941 C T SNP HIVEP1 ENST00000379388 human ensembl 74_37 +1 known silent c.5913 p.S1971 0.735 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors HIVEP1 HGNC ENSG00000095951 71 0 0 36 19 34.5455 GJA1 0 genome.wustl.edu 37 6 121768938 121768938 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 121768938 121768938 A G SNP GJA1 ENST00000282561 human ensembl 74_37 +1 known silent c.945 p.A315 0.989 NULL pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43 - no_errors GJA1 HGNC ENSG00000152661 136 0 0 81 39 32.5 KIAA1244 0 genome.wustl.edu 37 6 138615258 138615258 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 138615258 138615258 T C SNP KIAA1244 ENST00000251691 human ensembl 74_37 +1 known missense c.3497 p.M1166T 1.000 superfamily_ARM-type_fold pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom - no_errors KIAA1244 HGNC ENSG00000112379 50 0 0 30 3 9.09091 KIAA1244 0 genome.wustl.edu 37 6 138655648 138655648 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 138655648 138655648 G A SNP KIAA1244 ENST00000251691 human ensembl 74_37 +1 known missense c.5665 p.V1889I 1.000 NULL pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom - no_errors KIAA1244 HGNC ENSG00000112379 27 0 0 23 10 30.303 SASH1 0 genome.wustl.edu 37 6 148711347 148711347 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 148711347 148711347 C T SNP SASH1 ENST00000367467 human ensembl 74_37 +1 known silent c.234 p.C78 0.978 NULL pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM - no_errors SASH1 HGNC ENSG00000111961 72 0 0 28 17 37.7778 LATS1 0 genome.wustl.edu 37 6 150016247 150016247 + Silent SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 150016247 150016247 T A SNP LATS1 ENST00000253339 human ensembl 74_37 -1 known silent c.459 p.A153 0.998 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom - no_errors LATS1 HGNC ENSG00000131023 99 0 0 58 24 29.2683 ESR1 0 genome.wustl.edu 37 6 152129401 152129401 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 152129401 152129401 G A SNP ESR1 ENST00000206249 human ensembl 74_37 +1 known silent c.354 p.S118 0.993 pfam_Oestr_rcpt,prints_Oestr_rcpt pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt - no_errors ESR1 HGNC ENSG00000091831 11 0 0 8 5 38.4615 SYNE1 0 genome.wustl.edu 37 6 152542668 152542668 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 152542668 152542668 C T SNP SYNE1 ENST00000265368 human ensembl 74_37 -1 known silent c.21549 p.Q7183 1.000 pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 94 0 0 48 18 27.2727 SYNE1 0 genome.wustl.edu 37 6 152555882 152555882 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 152555882 152555882 C T SNP SYNE1 ENST00000265368 human ensembl 74_37 -1 known missense c.20450 p.R6817Q 0.960 superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 54 0 0 23 10 30.303 OPRM1 0 genome.wustl.edu 37 6 154360894 154360894 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 154360894 154360894 C T SNP OPRM1 ENST00000434900 human ensembl 74_37 +1 known missense c.494 p.T165M 1.000 prints_GPCR_Rhodpsn,prints_Somatstn_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt - no_errors OPRM1 HGNC ENSG00000112038 60 0 0 37 13 26 ATXN1 0 genome.wustl.edu 37 6 16328426 16328426 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 16328426 16328426 C T SNP ATXN1 ENST00000244769 human ensembl 74_37 -1 known missense c.116 p.R39Q 0.997 NULL pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1 - no_errors ATXN1 HGNC ENSG00000124788 121 0 0 41 24 36.9231 MLLT4 0 genome.wustl.edu 37 6 168347522 168347522 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 168347522 168347522 C A SNP MLLT4 ENST00000366806 human ensembl 74_37 +1 known missense c.3473 p.P1158H 0.997 NULL pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc - no_errors MLLT4 HGNC ENSG00000130396 125 0 0 92 6 6.12245 THBS2 0 genome.wustl.edu 37 6 169641950 169641950 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 169641950 169641950 G A SNP THBS2 ENST00000366787 human ensembl 74_37 -1 known silent c.798 p.C266 0.925 NULL pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C - no_errors THBS2 HGNC ENSG00000186340 67 0 0 27 8 22.8571 ERMARD 0 genome.wustl.edu 37 6 170176757 170176757 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 170176757 170176757 G A SNP ERMARD ENST00000366773 human ensembl 74_37 +1 known missense c.1727 p.R576H 0.998 NULL NULL - no_errors ERMARD HGNC ENSG00000130023 58 0 0 36 12 25 CAP2 0 genome.wustl.edu 37 6 17539525 17539525 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 17539525 17539525 C T SNP CAP2 ENST00000229922 human ensembl 74_37 +1 known missense c.662 p.A221V 0.000 pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif - no_errors CAP2 HGNC ENSG00000112186 201 0 0 106 51 32.4841 OR2B2 0 genome.wustl.edu 37 6 27880013 27880013 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 27880013 27880013 C A SNP OR2B2 ENST00000303324 human ensembl 74_37 -1 known missense c.85 p.V29L 0.987 prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2B2 HGNC ENSG00000168131 72 0 0 46 12 20.6897 HLA-F 0 genome.wustl.edu 37 6 29692082 29692082 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 29692082 29692082 C T SNP HLA-F ENST00000259951 human ensembl 74_37 +1 known missense c.467 p.A156V 0.738 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a - no_errors HLA-F HGNC ENSG00000204642 121 0 0 87 5 5.43478 HLA-F 0 genome.wustl.edu 37 6 29694785 29694785 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 29694785 29694785 G T SNP HLA-F ENST00000259951 human ensembl 74_37 +1 known missense c.1162 p.G388C 1.000 NULL pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a - no_errors HLA-F HGNC ENSG00000204642 168 0 0 100 41 29.078 ABCF1 0 genome.wustl.edu 37 6 30545935 30545935 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 30545935 30545935 G A SNP ABCF1 ENST00000326195 human ensembl 74_37 +1 known missense c.299 p.R100H 0.991 NULL pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCF1 HGNC ENSG00000204574 77 0 0 41 14 25.4545 PPP1R10 0 genome.wustl.edu 37 6 30572422 30572422 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 30572422 30572422 C T SNP PPP1R10 ENST00000376511 human ensembl 74_37 -1 known missense c.1045 p.A349T 0.004 NULL pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH - no_errors PPP1R10 HGNC ENSG00000204569 316 0 0 170 57 25.1101 VARS2 0 genome.wustl.edu 37 6 30892199 30892199 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 30892199 30892199 C T SNP VARS2 ENST00000541562 human ensembl 74_37 +1 known silent c.2625 p.C875 0.833 pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase - no_errors VARS2 HGNC ENSG00000137411 84 0 0 40 17 29.8246 BPHL 0 genome.wustl.edu 37 6 3152763 3152763 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 3152763 3152763 G A SNP BPHL ENST00000380379 human ensembl 74_37 +1 known missense c.830 p.R277H 0.718 pfam_AB_hydrolase_1 pfam_AB_hydrolase_1 - no_errors BPHL HGNC ENSG00000137274 115 0 0 69 29 29.5918 ATF6B 0 genome.wustl.edu 37 6 32087712 32087712 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 32087712 32087712 C A SNP ATF6B ENST00000375203 human ensembl 74_37 -1 known missense c.855 p.Q285H 0.995 NULL pfam_bZIP,smart_bZIP,pfscan_bZIP - no_errors ATF6B HGNC ENSG00000213676 37 0 0 24 4 14.2857 AGPAT1 0 genome.wustl.edu 37 6 32137118 32137118 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 32137118 32137118 G A SNP AGPAT1 ENST00000336984 human ensembl 74_37 -1 known missense c.787 p.R263W 1.000 NULL pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans - no_errors AGPAT1 HGNC ENSG00000204310 173 0 0 90 42 31.8182 HLA-DQB2 0 genome.wustl.edu 37 6 32726773 32726773 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 32726773 32726773 G A SNP HLA-DQB2 ENST00000435145 human ensembl 74_37 -1 known missense c.500 p.A167V 0.725 pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom pfam_MHC_II_b_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom - no_errors HLA-DQB2 HGNC ENSG00000232629 54 0 0 32 22 40.7407 PSMB9 0 genome.wustl.edu 37 6 32825904 32825904 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 32825904 32825904 G A SNP PSMB9 ENST00000374859 human ensembl 74_37 +1 known missense c.383 p.G128E 1.000 pfam_Proteasome_sua/b pfam_Proteasome_sua/b,prints_Pept_T1A_subB - no_errors PSMB9 HGNC ENSG00000240065 107 0 0 64 23 26.4368 HLA-DOA 0 genome.wustl.edu 37 6 32976132 32976132 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 32976132 32976132 G A SNP HLA-DOA ENST00000467465 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors HLA-DOA HGNC ENSG00000204252 21 0 0 7 3 30 COL11A2 0 genome.wustl.edu 37 6 33133582 33133582 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 33133582 33133582 G A SNP COL11A2 ENST00000341947 human ensembl 74_37 -1 known silent c.4494 p.G1498 0.048 pfam_Collagen pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL11A2 HGNC ENSG00000204248 93 0 0 41 17 29.3103 COL11A2 0 genome.wustl.edu 37 6 33153500 33153500 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 33153500 33153500 G A SNP COL11A2 ENST00000341947 human ensembl 74_37 -1 known missense c.854 p.T285M 0.729 NULL pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL11A2 HGNC ENSG00000204248 83 0 0 49 18 26.8657 GRM4 0 genome.wustl.edu 37 6 34008337 34008337 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 34008337 34008337 C T SNP GRM4 ENST00000374181 human ensembl 74_37 -1 known missense c.1357 p.V453I 0.998 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B - no_errors GRM4 HGNC ENSG00000124493 25 0 0 9 6 40 SNRPC 0 genome.wustl.edu 37 6 34741334 34741334 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 34741334 34741334 G A SNP SNRPC ENST00000374017 human ensembl 74_37 +1 known missense c.530 p.R177Q 1.000 pirsf_U1_snRNP-C pfam_Znf_U1-C,smart_Znf_U1,pirsf_U1_snRNP-C,pfscan_Znf_C2H2_matrin - no_errors SNRPC HGNC ENSG00000124562 100 0 0 62 16 20.5128 TULP1 0 genome.wustl.edu 37 6 35471369 35471369 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 35471369 35471369 C T SNP TULP1 ENST00000229771 human ensembl 74_37 -1 known silent c.1290 p.A430 0.000 pfam_Tubby_C,superfamily_Tubby_C-like pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C - no_errors TULP1 HGNC ENSG00000112041 16 0 0 11 5 31.25 SRPK1 0 genome.wustl.edu 37 6 35837277 35837277 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 35837277 35837277 C T SNP SRPK1 ENST00000373825 human ensembl 74_37 -1 known missense c.1393 p.G465R 1.000 superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors SRPK1 HGNC ENSG00000096063 104 0 0 70 28 28.5714 IRF4 0 genome.wustl.edu 37 6 394997 394997 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 394997 394997 A G SNP IRF4 ENST00000380956 human ensembl 74_37 +1 known silent c.393 p.G131 0.652 NULL pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom - no_errors IRF4 HGNC ENSG00000137265 38 0 0 34 4 10.5263 TRERF1 0 genome.wustl.edu 37 6 42211030 42211030 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 42211030 42211030 G A SNP TRERF1 ENST00000541110 human ensembl 74_37 -1 known missense c.2875 p.R959W 0.999 NULL pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2 - no_errors TRERF1 HGNC ENSG00000124496 193 0 0 112 45 28.6624 C6orf226 0 genome.wustl.edu 37 6 42858503 42858503 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 42858503 42858503 T C SNP C6orf226 ENST00000408925 human ensembl 74_37 -1 novel silent c.24 p.Q8 0.000 NULL NULL - no_errors C6orf226 HGNC ENSG00000221821 80 0 0 32 18 36 CUL7 0 genome.wustl.edu 37 6 43020092 43020092 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 43020092 43020092 G A SNP CUL7 ENST00000535468 human ensembl 74_37 -1 known silent c.591 p.S197 0.699 superfamily_ARM-type_fold pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology - no_errors CUL7 HGNC ENSG00000044090 47 0 0 21 9 30 CUL9 0 genome.wustl.edu 37 6 43166449 43166449 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 43166449 43166449 G A SNP CUL9 ENST00000252050 human ensembl 74_37 +1 known missense c.2906 p.R969H 0.266 superfamily_ARM-type_fold pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology - no_errors CUL9 HGNC ENSG00000112659 217 0 0 115 41 26.2821 ABCC10 0 genome.wustl.edu 37 6 43417235 43417235 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 43417235 43417235 C T SNP ABCC10 ENST00000372530 human ensembl 74_37 +1 known missense c.4279 p.R1427C 1.000 superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom - no_errors ABCC10 HGNC ENSG00000124574 87 0 0 46 20 30.303 PAQR8 0 genome.wustl.edu 37 6 52269023 52269023 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 52269023 52269023 G A SNP PAQR8 ENST00000360726 human ensembl 74_37 +1 known missense c.1012 p.A338T 0.989 NULL pfam_HlyIII-related,superfamily_C-type_lectin_fold - no_errors PAQR8 HGNC ENSG00000170915 27 0 0 14 11 44 EXOC2 0 genome.wustl.edu 37 6 532495 532495 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 532495 532495 T A SNP EXOC2 ENST00000230449 human ensembl 74_37 -1 known missense c.2354 p.D785V 1.000 NULL pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom - no_errors EXOC2 HGNC ENSG00000112685 62 0 0 28 8 22.2222 KHDRBS2 0 genome.wustl.edu 37 6 62604715 62604715 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 62604715 62604715 G T SNP KHDRBS2 ENST00000281156 human ensembl 74_37 -1 known missense c.635 p.P212H 1.000 NULL pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1 - no_errors KHDRBS2 HGNC ENSG00000112232 48 0 0 13 7 35 PHF3 0 genome.wustl.edu 37 6 64395471 64395471 + Silent SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 64395471 64395471 T A SNP PHF3 ENST00000262043 human ensembl 74_37 +1 known silent c.1848 p.T616 0.953 NULL pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger - no_errors PHF3 HGNC ENSG00000118482 63 0 0 46 6 11.5385 BAI3 0 genome.wustl.edu 37 6 70071269 70071269 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 70071269 70071269 A G SNP BAI3 ENST00000370598 human ensembl 74_37 +1 known silent c.4104 p.A1368 1.000 NULL pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like - no_errors BAI3 HGNC ENSG00000135298 136 0 0 82 33 28.6957 RIMS1 0 genome.wustl.edu 37 6 73023356 73023356 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 73023356 73023356 C T SNP RIMS1 ENST00000521978 human ensembl 74_37 +1 known missense c.4111 p.R1371C 1.000 NULL pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel - no_errors RIMS1 HGNC ENSG00000079841 23 0 0 16 4 20 KCNQ5 0 genome.wustl.edu 37 6 73902299 73902299 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 73902299 73902299 T C SNP KCNQ5 ENST00000402622 human ensembl 74_37 +1 known missense c.1751 p.I584T 1.000 pfam_K_chnl_volt-dep_KCNQ_C pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl - no_errors KCNQ5 HGNC ENSG00000185760 63 0 0 34 11 24.4444 DSP 0 genome.wustl.edu 37 6 7584495 7584495 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 7584495 7584495 C T SNP DSP ENST00000379802 human ensembl 74_37 +1 known nonsense c.7000 p.R2334* 1.000 smart_Plectin_repeat pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat - no_errors DSP HGNC ENSG00000096696 40 0 0 13 17 56.6667 MYO6 0 genome.wustl.edu 37 6 76623784 76623784 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 76623784 76623784 G A SNP MYO6 ENST00000369981 human ensembl 74_37 +1 known silent c.3447 p.Q1149 1.000 NULL pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom - no_errors MYO6 HGNC ENSG00000196586 88 0 0 62 21 25.3012 BMP6 0 genome.wustl.edu 37 6 7727818 7727818 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 7727818 7727818 C T SNP BMP6 ENST00000283147 human ensembl 74_37 +1 known silent c.630 p.N210 1.000 pfam_TGF-b_N pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C - no_errors BMP6 HGNC ENSG00000153162 32 0 0 20 3 13.0435 DOPEY1 0 genome.wustl.edu 37 6 83848119 83848119 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 83848119 83848119 T C SNP DOPEY1 ENST00000349129 human ensembl 74_37 +1 known missense c.4358 p.I1453T 1.000 superfamily_ARM-type_fold pfam_Dopey_N,superfamily_ARM-type_fold - no_errors DOPEY1 HGNC ENSG00000083097 99 0 0 40 25 38.4615 PGM3 0 genome.wustl.edu 37 6 83885707 83885707 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 83885707 83885707 A G SNP PGM3 ENST00000513973 human ensembl 74_37 -1 known missense c.1102 p.Y368H 1.000 superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM - no_errors PGM3 HGNC ENSG00000013375 72 0 0 35 14 28.5714 ZNF292 0 genome.wustl.edu 37 6 87970082 87970082 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 87970082 87970082 A G SNP ZNF292 ENST00000369577 human ensembl 74_37 +1 known silent c.6735 p.L2245 0.003 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF292 HGNC ENSG00000188994 83 0 0 47 3 6 EPHA7 0 genome.wustl.edu 37 6 94120757 94120757 + Silent SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 94120757 94120757 A T SNP EPHA7 ENST00000369303 human ensembl 74_37 -1 known silent c.294 p.I98 1.000 pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom - no_errors EPHA7 HGNC ENSG00000135333 103 0 0 63 23 26.7442 GNB2 0 genome.wustl.edu 37 7 100276170 100276170 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 100276170 100276170 G A SNP GNB2 ENST00000303210 human ensembl 74_37 +1 known silent c.849 p.R283 1.000 pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors GNB2 HGNC ENSG00000172354 67 0 0 22 13 37.1429 SLC12A9 0 genome.wustl.edu 37 7 100453339 100453339 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 100453339 100453339 C T SNP SLC12A9 ENST00000354161 human ensembl 74_37 +1 known missense c.328 p.R110C 1.000 pfam_AA-permease/SLC12A_dom pfam_AA-permease/SLC12A_dom - no_errors SLC12A9 HGNC ENSG00000146828 217 0 0 100 49 32.8859 MUC17 0 genome.wustl.edu 37 7 100676267 100676267 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 100676267 100676267 G A SNP MUC17 ENST00000306151 human ensembl 74_37 +1 known missense c.1570 p.A524T 0.000 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom - no_errors MUC17 HGNC ENSG00000169876 673 1 0.148368 407 171 29.5848 PIK3CG 0 genome.wustl.edu 37 7 106523501 106523501 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 106523501 106523501 G A SNP PIK3CG ENST00000359195 human ensembl 74_37 +1 known missense c.2653 p.A885T 1.000 pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CG HGNC ENSG00000105851 222 0 0 113 57 33.5294 NRCAM 0 genome.wustl.edu 37 7 107832251 107832251 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 107832251 107832251 C T SNP NRCAM ENST00000379028 human ensembl 74_37 -1 known missense c.1825 p.D609N 0.000 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors NRCAM HGNC ENSG00000091129 77 0 0 54 24 30.7692 TFEC 0 genome.wustl.edu 37 7 115624318 115624318 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 115624318 115624318 G A SNP TFEC ENST00000265440 human ensembl 74_37 -1 known missense c.178 p.H60Y 1.000 NULL pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom - no_errors TFEC HGNC ENSG00000105967 156 0 0 87 44 33.5878 PTPRZ1 0 genome.wustl.edu 37 7 121651647 121651647 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 121651647 121651647 C T SNP PTPRZ1 ENST00000393386 human ensembl 74_37 +1 known silent c.2547 p.T849 0.809 NULL pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRZ1 HGNC ENSG00000106278 115 0 0 52 20 27.7778 IQUB 0 genome.wustl.edu 37 7 123101607 123101607 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 123101607 123101607 C A SNP IQUB ENST00000324698 human ensembl 74_37 -1 known missense c.1811 p.C604F 1.000 NULL pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup - no_errors IQUB HGNC ENSG00000164675 24 0 0 12 10 45.4545 HYAL4 0 genome.wustl.edu 37 7 123516942 123516942 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 123516942 123516942 C T SNP HYAL4 ENST00000223026 human ensembl 74_37 +1 known silent c.1179 p.N393 0.000 pirsf_Hyaluronidase pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase - no_errors HYAL4 HGNC ENSG00000106302 66 0 0 32 9 21.9512 FLNC 0 genome.wustl.edu 37 7 128482949 128482949 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 128482949 128482949 G A SNP FLNC ENST00000325888 human ensembl 74_37 +1 known missense c.2491 p.V831I 1.000 pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like - no_errors FLNC HGNC ENSG00000128591 78 0 0 30 11 26.8293 FLNC 0 genome.wustl.edu 37 7 128486419 128486419 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 128486419 128486419 C T SNP FLNC ENST00000325888 human ensembl 74_37 +1 known silent c.4029 p.G1343 0.517 superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like - no_errors FLNC HGNC ENSG00000128591 56 0 0 21 16 43.2432 TMEM209 0 genome.wustl.edu 37 7 129813694 129813694 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 129813694 129813694 T C SNP TMEM209 ENST00000397622 human ensembl 74_37 -1 known missense c.1430 p.Q477R 1.000 pfam_Cytochrome_B561-rel pfam_Cytochrome_B561-rel - no_errors TMEM209 HGNC ENSG00000146842 196 0 0 125 43 25.5952 CPA5 0 genome.wustl.edu 37 7 129986424 129986424 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 129986424 129986424 G A SNP CPA5 ENST00000355388 human ensembl 74_37 +1 known missense c.98 p.G33D 1.000 NULL pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14 - no_errors CPA5 HGNC ENSG00000158525 99 0 0 51 25 32.8947 PODXL 0 genome.wustl.edu 37 7 131196153 131196153 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 131196153 131196153 G A SNP PODXL ENST00000541194 human ensembl 74_37 -1 known missense c.146 p.P49L 0.000 pirsf_Podocalyxin-like_p1 pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1 - no_errors PODXL HGNC ENSG00000128567 107 0 0 64 22 25.5814 CALD1 0 genome.wustl.edu 37 7 134643002 134643002 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 134643002 134643002 G T SNP CALD1 ENST00000361388 human ensembl 74_37 +1 known missense c.1335 p.K445N 1.000 pfam_Caldesmon_LSP,prints_Caldesmon pfam_Caldesmon_LSP,prints_Caldesmon - no_errors CALD1 HGNC ENSG00000122786 150 1 0.662252 114 21 15.5556 KIAA1549 0 genome.wustl.edu 37 7 138603524 138603524 + Nonsense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 138603524 138603524 A T SNP KIAA1549 ENST00000422774 human ensembl 74_37 -1 known nonsense c.848 p.L283* 0.001 NULL NULL - no_errors KIAA1549 HGNC ENSG00000122778 30 0 0 9 3 25 FAM115A 0 genome.wustl.edu 37 7 143573697 143573697 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 143573697 143573697 G A SNP FAM115A ENST00000479870 human ensembl 74_37 -1 known missense c.5 p.A2V 0.980 NULL NULL - no_errors FAM115A HGNC ENSG00000198420 69 0 0 33 14 29.7872 OR2A2 0 genome.wustl.edu 37 7 143806930 143806930 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 143806930 143806930 G A SNP OR2A2 ENST00000408979 human ensembl 74_37 +1 known missense c.255 p.M85I 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2A2 HGNC ENSG00000221989 160 1 0.621118 113 25 18.1159 TPK1 0 genome.wustl.edu 37 7 144150649 144150649 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 144150649 144150649 T C SNP TPK1 ENST00000360057 human ensembl 74_37 -1 known missense c.721 p.I241V 1.000 superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase - no_errors TPK1 HGNC ENSG00000196511 171 0 0 121 39 24.375 CNTNAP2 0 genome.wustl.edu 37 7 147092804 147092804 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 147092804 147092804 C T SNP CNTNAP2 ENST00000361727 human ensembl 74_37 +1 known silent c.1602 p.Y534 0.753 superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G - no_errors CNTNAP2 HGNC ENSG00000174469 169 0 0 87 25 22.3214 CUL1 0 genome.wustl.edu 37 7 148463663 148463663 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 148463663 148463663 G A SNP CUL1 ENST00000325222 human ensembl 74_37 +1 known missense c.800 p.R267H 1.000 pfam_Cullin_N,superfamily_Cullin_repeat-like_dom pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology - no_errors CUL1 HGNC ENSG00000055130 55 0 0 30 11 26.8293 CUL1 0 genome.wustl.edu 37 7 148485686 148485686 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 148485686 148485686 G A SNP CUL1 ENST00000325222 human ensembl 74_37 +1 known missense c.1517 p.R506H 1.000 pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology - no_errors CUL1 HGNC ENSG00000055130 104 0 0 63 21 25 ZNF783 0 genome.wustl.edu 37 7 148963915 148963915 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 148963915 148963915 C T SNP ZNF783 ENST00000434415 human ensembl 74_37 +1 known silent c.426 p.P142 0.443 superfamily_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel - no_errors ZNF783 HGNC ENSG00000204946 257 0 0 130 44 25.2874 SSPO 0 genome.wustl.edu 37 7 149475868 149475868 + Splice_Site SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 149475868 149475868 A G SNP SSPO ENST00000262089 human ensembl 74_37 +1 known splice_site c.NULL NULL 1.000 - - - no_errors SSPO HGNC ENSG00000197558 37 0 0 22 4 15.3846 SSPO 0 genome.wustl.edu 37 7 149515744 149515744 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 149515744 149515744 G A SNP SSPO ENST00000378016 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors SSPO HGNC ENSG00000197558 55 0 0 27 18 40 KCNH2 0 genome.wustl.edu 37 7 150648197 150648197 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 150648197 150648197 C T SNP KCNH2 ENST00000262186 human ensembl 74_37 -1 known missense c.1957 p.A653T 1.000 pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS - no_errors KCNH2 HGNC ENSG00000055118 46 0 0 27 6 18.1818 GBX1 0 genome.wustl.edu 37 7 150864391 150864391 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 150864391 150864391 C T SNP GBX1 ENST00000297537 human ensembl 74_37 -1 known missense c.245 p.R82H 1.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom - no_errors GBX1 HGNC ENSG00000164900 13 0 0 5 3 37.5 NUB1 0 genome.wustl.edu 37 7 151052933 151052933 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 151052933 151052933 G A SNP NUB1 ENST00000568733 human ensembl 74_37 +1 known silent c.567 p.A189 0.000 NULL pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk - no_errors NUB1 HGNC ENSG00000013374 20 0 0 8 3 27.2727 WDR86 0 genome.wustl.edu 37 7 151093119 151093119 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 151093119 151093119 C T SNP WDR86 ENST00000477459 human ensembl 74_37 -1 known missense c.85 p.A29T 0.000 pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR86 HGNC ENSG00000187260 21 0 0 8 3 27.2727 GALNT11 0 genome.wustl.edu 37 7 151791456 151791456 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 151791456 151791456 C T SNP GALNT11 ENST00000320311 human ensembl 74_37 +1 known silent c.144 p.H48 0.002 NULL pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNT11 HGNC ENSG00000178234 137 0 0 64 26 28.8889 HTR5A 0 genome.wustl.edu 37 7 154863133 154863133 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 154863133 154863133 C T SNP HTR5A ENST00000287907 human ensembl 74_37 +1 known missense c.524 p.A175V 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt - no_errors HTR5A HGNC ENSG00000157219 68 0 0 38 10 20.8333 HTR5A 0 genome.wustl.edu 37 7 154863297 154863297 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 154863297 154863297 C T SNP HTR5A ENST00000287907 human ensembl 74_37 +1 known missense c.688 p.R230C 1.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt - no_errors HTR5A HGNC ENSG00000157219 54 0 0 27 12 30.7692 NOM1 0 genome.wustl.edu 37 7 156743110 156743110 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 156743110 156743110 A G SNP NOM1 ENST00000275820 human ensembl 74_37 +1 known missense c.679 p.K227E 0.001 NULL pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI - no_errors NOM1 HGNC ENSG00000146909 112 0 0 58 30 34.0909 NPVF 0 genome.wustl.edu 37 7 25266466 25266466 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 25266466 25266466 G A SNP NPVF ENST00000222674 human ensembl 74_37 -1 known silent c.318 p.A106 0.065 NULL NULL - no_errors NPVF HGNC ENSG00000105954 167 0 0 102 42 29.1667 CARD11 0 genome.wustl.edu 37 7 2976742 2976742 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 2976742 2976742 G A SNP CARD11 ENST00000396946 human ensembl 74_37 -1 known missense c.1270 p.R424W 1.000 NULL pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD - no_errors CARD11 HGNC ENSG00000198286 62 0 0 25 5 16.6667 PDE1C 0 genome.wustl.edu 37 7 31862802 31862802 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 31862802 31862802 C A SNP PDE1C ENST00000321453 human ensembl 74_37 -1 known missense c.1467 p.E489D 1.000 NULL pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE1C HGNC ENSG00000154678 55 0 0 41 15 26.7857 NT5C3A 0 genome.wustl.edu 37 7 33057165 33057165 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 33057165 33057165 G A SNP NT5C3A ENST00000242210 human ensembl 74_37 -1 known silent c.594 p.P198 0.228 pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu - no_errors NT5C3A HGNC ENSG00000122643 111 0 0 69 42 37.8378 DPY19L2P1 0 genome.wustl.edu 37 7 35131480 35131480 + RNA SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 35131480 35131480 A T SNP DPY19L2P1 ENST00000436258 human ensembl 74_37 -1 known rna NULL NULL 0.997 - - - no_errors DPY19L2P1 HGNC ENSG00000189212 63 0 0 58 4 6.45161 DPY19L2P1 0 genome.wustl.edu 37 7 35131521 35131521 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 35131521 35131521 G A SNP DPY19L2P1 ENST00000436258 human ensembl 74_37 -1 known rna NULL NULL 0.979 - - - no_errors DPY19L2P1 HGNC ENSG00000189212 63 0 0 55 4 6.77966 SDK1 0 genome.wustl.edu 37 7 4056969 4056969 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 4056969 4056969 T C SNP SDK1 ENST00000404826 human ensembl 74_37 +1 known missense c.2587 p.Y863H 0.999 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors SDK1 HGNC ENSG00000146555 51 0 0 27 3 10 HECW1 0 genome.wustl.edu 37 7 43547694 43547694 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 43547694 43547694 G A SNP HECW1 ENST00000395891 human ensembl 74_37 +1 known missense c.3830 p.R1277Q 1.000 superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom - no_errors HECW1 HGNC ENSG00000002746 88 0 0 46 18 28.125 DBNL 0 genome.wustl.edu 37 7 44096401 44096401 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 44096401 44096401 C T SNP DBNL ENST00000468694 human ensembl 74_37 +1 known missense c.373 p.P125S 1.000 pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin pfam_Actin-bd_cofilin/tropomyosin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Actin-bd_cofilin/tropomyosin,smart_SH3_domain,pfscan_SH3_domain - no_errors DBNL HGNC ENSG00000136279 83 0 0 35 11 23.913 CAMK2B 0 genome.wustl.edu 37 7 44286737 44286737 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 44286737 44286737 G A SNP CAMK2B ENST00000523845 human ensembl 74_37 -1 known missense c.275 p.S92L 0.998 pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom - no_errors CAMK2B HGNC ENSG00000058404 53 0 0 24 16 40 TBRG4 0 genome.wustl.edu 37 7 45145252 45145252 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 45145252 45145252 G A SNP TBRG4 ENST00000258770 human ensembl 74_37 -1 known missense c.523 p.R175C 1.000 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP - no_errors TBRG4 HGNC ENSG00000136270 82 0 0 30 16 34.7826 FOXK1 0 genome.wustl.edu 37 7 4799028 4799028 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 4799028 4799028 G A SNP FOXK1 ENST00000328914 human ensembl 74_37 +1 known missense c.1498 p.A500T 0.731 NULL pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXK1 HGNC ENSG00000164916 21 0 0 14 8 36.3636 ZPBP 0 genome.wustl.edu 37 7 50097612 50097612 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 50097612 50097612 G A SNP ZPBP ENST00000046087 human ensembl 74_37 -1 known missense c.460 p.R154C 0.923 pfam_Sp38-bd,pfscan_Ig-like_dom pfam_Sp38-bd,pfscan_Ig-like_dom - no_errors ZPBP HGNC ENSG00000042813 51 0 0 13 5 27.7778 EGFR 0 genome.wustl.edu 37 7 55266518 55266518 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 55266518 55266518 C T SNP EGFR ENST00000275493 human ensembl 74_37 +1 known missense c.2810 p.P937L 1.000 pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors EGFR HGNC ENSG00000146648 68 0 0 39 11 22 ZNF716 0 genome.wustl.edu 37 7 57529048 57529048 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 57529048 57529048 A G SNP ZNF716 ENST00000420713 human ensembl 74_37 +1 known missense c.881 p.K294R 1.000 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF716 HGNC ENSG00000182111 60 0 0 39 3 7.14286 ZNF716 0 genome.wustl.edu 37 7 57529057 57529057 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 57529057 57529057 C A SNP ZNF716 ENST00000420713 human ensembl 74_37 +1 known missense c.890 p.T297K 0.914 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF716 HGNC ENSG00000182111 62 0 0 40 3 6.97674 USP42 0 genome.wustl.edu 37 7 6196618 6196618 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 6196618 6196618 G A SNP USP42 ENST00000306177 human ensembl 74_37 +1 known missense c.3875 p.R1292H 0.004 NULL pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67 - no_errors USP42 HGNC ENSG00000106346 23 0 0 11 6 35.2941 DAGLB 0 genome.wustl.edu 37 7 6456489 6456489 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 6456489 6456489 C A SNP DAGLB ENST00000297056 human ensembl 74_37 -1 known missense c.1282 p.A428S 1.000 pfam_Lipase_3 pfam_Lipase_3 - no_errors DAGLB HGNC ENSG00000164535 59 0 0 39 4 9.30233 TYW1 0 genome.wustl.edu 37 7 66548503 66548503 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 66548503 66548503 A G SNP TYW1 ENST00000359626 human ensembl 74_37 +1 known missense c.1361 p.Q454R 1.000 pfam_rSAM pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin - no_errors TYW1 HGNC ENSG00000198874 68 0 0 45 12 21.0526 PMS2CL 0 genome.wustl.edu 37 7 6776842 6776842 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 6776842 6776842 G A SNP PMS2CL ENST00000486256 human ensembl 74_37 +1 known rna NULL NULL 0.010 - - - no_errors PMS2CL HGNC ENSG00000187953 25 0 0 9 7 43.75 ELN 0 genome.wustl.edu 37 7 73477988 73477988 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 73477988 73477988 C T SNP ELN ENST00000358929 human ensembl 74_37 +1 known silent c.2160 p.V720 0.000 NULL prints_Tropoelastin - no_errors ELN HGNC ENSG00000049540 144 0 0 49 30 37.9747 GTF2IRD1 0 genome.wustl.edu 37 7 73932542 73932542 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 73932542 73932542 C T SNP GTF2IRD1 ENST00000265755 human ensembl 74_37 +1 known silent c.495 p.A165 0.256 pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I - no_errors GTF2IRD1 HGNC ENSG00000006704 34 0 0 13 3 18.75 GRM3 0 genome.wustl.edu 37 7 86415922 86415922 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 86415922 86415922 G A SNP GRM3 ENST00000361669 human ensembl 74_37 +1 known missense c.814 p.V272M 1.000 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B - no_errors GRM3 HGNC ENSG00000198822 93 0 0 43 19 30.6452 DMTF1 0 genome.wustl.edu 37 7 86795920 86795920 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 86795920 86795920 A G SNP DMTF1 ENST00000331242 human ensembl 74_37 +1 known silent c.231 p.P77 1.000 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors DMTF1 HGNC ENSG00000135164 98 0 0 71 18 20.2247 ABCB4 0 genome.wustl.edu 37 7 87046743 87046743 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 87046743 87046743 A G SNP ABCB4 ENST00000265723 human ensembl 74_37 -1 known missense c.2567 p.L856S 0.999 pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom - no_errors ABCB4 HGNC ENSG00000005471 52 0 0 48 14 22.5806 HEPACAM2 0 genome.wustl.edu 37 7 92837964 92837964 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 92837964 92837964 A G SNP HEPACAM2 ENST00000394468 human ensembl 74_37 -1 known missense c.941 p.V314A 0.989 smart_Ig_sub,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors HEPACAM2 HGNC ENSG00000188175 101 0 0 59 26 30.5882 GNG11 0 genome.wustl.edu 37 7 93551517 93551517 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 93551517 93551517 G A SNP GNG11 ENST00000248564 human ensembl 74_37 +1 known missense c.68 p.R23H 1.000 pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma - no_errors GNG11 HGNC ENSG00000127920 21 0 0 10 4 28.5714 PPP1R9A 0 genome.wustl.edu 37 7 94855332 94855332 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 94855332 94855332 C T SNP PPP1R9A ENST00000289495 human ensembl 74_37 +1 known silent c.1950 p.S650 0.670 NULL pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM - no_errors PPP1R9A HGNC ENSG00000158528 76 0 0 50 19 27.5362 LMTK2 0 genome.wustl.edu 37 7 97833426 97833426 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 97833426 97833426 T C SNP LMTK2 ENST00000297293 human ensembl 74_37 +1 known missense c.4411 p.F1471L 1.000 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors LMTK2 HGNC ENSG00000164715 171 0 0 72 19 20.8791 TRRAP 0 genome.wustl.edu 37 7 98519451 98519451 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 98519451 98519451 G A SNP TRRAP ENST00000359863 human ensembl 74_37 +1 known missense c.2698 p.G900S 1.000 superfamily_ARM-type_fold pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom - no_errors TRRAP HGNC ENSG00000196367 121 0 0 68 25 26.8817 ZKSCAN5 0 genome.wustl.edu 37 7 99129277 99129277 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 99129277 99129277 T A SNP ZKSCAN5 ENST00000326775 human ensembl 74_37 +1 known missense c.1925 p.F642Y 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN - no_errors ZKSCAN5 HGNC ENSG00000196652 81 0 0 37 4 9.7561 AP4M1 0 genome.wustl.edu 37 7 99702715 99702715 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 99702715 99702715 C T SNP AP4M1 ENST00000359593 human ensembl 74_37 +1 known silent c.721 p.L241 0.998 pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu,pfscan_Clathrin_mu_C - no_errors AP4M1 HGNC ENSG00000221838 63 0 0 27 17 38.6364 TAF6 0 genome.wustl.edu 37 7 99710469 99710469 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 99710469 99710469 C T SNP TAF6 ENST00000344095 human ensembl 74_37 -1 known missense c.526 p.G176R 0.994 NULL pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd - no_errors TAF6 HGNC ENSG00000106290 247 0 0 126 55 30.3867 RP1L1 0 genome.wustl.edu 37 8 10467651 10467651 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 10467651 10467651 C T SNP RP1L1 ENST00000382483 human ensembl 74_37 -1 known silent c.3957 p.A1319 0.001 NULL pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom - no_errors RP1L1 HGNC ENSG00000183638 39 0 0 16 6 27.2727 ZFPM2 0 genome.wustl.edu 37 8 106814404 106814404 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 106814404 106814404 G A SNP ZFPM2 ENST00000407775 human ensembl 74_37 +1 known silent c.2094 p.R698 0.986 smart_Znf_C2H2-like smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZFPM2 HGNC ENSG00000169946 42 0 0 20 9 31.0345 EIF3E 0 genome.wustl.edu 37 8 109241324 109241324 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 109241324 109241324 C T SNP EIF3E ENST00000220849 human ensembl 74_37 -1 known missense c.572 p.R191Q 1.000 pirsf_eIF3e pfam_eIF3e_N,pfam_PCI_dom,smart_PCI_dom,pirsf_eIF3e - no_errors EIF3E HGNC ENSG00000104408 93 0 0 57 17 22.973 XKR6 0 genome.wustl.edu 37 8 11058405 11058405 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 11058405 11058405 C T SNP XKR6 ENST00000416569 human ensembl 74_37 -1 known nonsense c.444 p.W148* 1.000 pfam_Transport_prot_XK pfam_Transport_prot_XK - no_errors XKR6 HGNC ENSG00000171044 86 0 0 49 30 37.9747 KCNV1 0 genome.wustl.edu 37 8 110986292 110986292 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 110986292 110986292 G A SNP KCNV1 ENST00000297404 human ensembl 74_37 -1 known missense c.326 p.A109V 0.990 pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3 pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4 - no_errors KCNV1 HGNC ENSG00000164794 33 0 0 7 10 58.8235 DEPTOR 0 genome.wustl.edu 37 8 121021305 121021305 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 121021305 121021305 G A SNP DEPTOR ENST00000286234 human ensembl 74_37 +1 known missense c.1034 p.R345Q 1.000 superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ - no_errors DEPTOR HGNC ENSG00000155792 59 0 0 24 5 17.2414 COL14A1 0 genome.wustl.edu 37 8 121256232 121256232 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 121256232 121256232 G A SNP COL14A1 ENST00000297848 human ensembl 74_37 +1 known missense c.2464 p.A822T 0.568 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A - no_errors COL14A1 HGNC ENSG00000187955 74 0 0 39 22 36.0656 ZHX1 0 genome.wustl.edu 37 8 124267572 124267572 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 124267572 124267572 G A SNP ZHX1 ENST00000297857 human ensembl 74_37 -1 known silent c.615 p.D205 0.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2 - no_errors ZHX1 HGNC ENSG00000165156 98 0 0 51 16 23.8806 MYC 0 genome.wustl.edu 37 8 128752802 128752802 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 128752802 128752802 G A SNP MYC ENST00000377970 human ensembl 74_37 +1 known silent c.963 p.Q321 1.000 pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc - no_errors MYC HGNC ENSG00000136997 44 0 0 41 3 6.81818 DLC1 0 genome.wustl.edu 37 8 12946207 12946207 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 12946207 12946207 C T SNP DLC1 ENST00000276297 human ensembl 74_37 -1 known missense c.4081 p.E1361K 1.000 pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom - no_errors DLC1 HGNC ENSG00000164741 61 0 0 26 15 36.5854 ADCY8 0 genome.wustl.edu 37 8 131916289 131916289 + Splice_Site SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 131916289 131916289 C A SNP ADCY8 ENST00000286355 human ensembl 74_37 -1 known splice_site c.1641-1 e7-1 1.000 - - - no_errors ADCY8 HGNC ENSG00000155897 126 0 0 110 22 16.6667 OC90 0 genome.wustl.edu 37 8 133053404 133053404 + Splice_Site SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 133053404 133053404 C T SNP OC90 ENST00000443356 human ensembl 74_37 -1 known splice_site c.345-1 e5-1 1.000 - - - no_errors OC90 Uniprot_gn ENSG00000258417 72 0 0 26 20 43.4783 TG 0 genome.wustl.edu 37 8 133885421 133885421 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 133885421 133885421 A G SNP TG ENST00000220616 human ensembl 74_37 +1 known missense c.593 p.N198S 1.000 superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1 pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1 - no_errors TG HGNC ENSG00000042832 48 0 0 33 7 17.5 WISP1 0 genome.wustl.edu 37 8 134232915 134232915 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 134232915 134232915 C T SNP WISP1 ENST00000250160 human ensembl 74_37 +1 known silent c.441 p.I147 0.990 pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C - no_errors WISP1 HGNC ENSG00000104415 156 0 0 73 26 26.2626 AGO2 0 genome.wustl.edu 37 8 141570558 141570558 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 141570558 141570558 G A SNP AGO2 ENST00000220592 human ensembl 74_37 -1 known silent c.570 p.N190 1.000 pfam_DUF1785,superfamily_PAZ_dom pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi - no_errors AGO2 HGNC ENSG00000123908 97 0 0 54 4 6.89655 PTK2 0 genome.wustl.edu 37 8 141762399 141762399 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 141762399 141762399 G A SNP PTK2 ENST00000395218 human ensembl 74_37 -1 known missense c.1349 p.A450V 1.000 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors PTK2 HGNC ENSG00000169398 45 0 0 30 12 28.5714 BAI1 0 genome.wustl.edu 37 8 143566074 143566074 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 143566074 143566074 G A SNP BAI1 ENST00000323289 human ensembl 74_37 +1 known missense c.2257 p.G753S 1.000 pfam_DUF3497 pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like - no_errors BAI1 HGNC ENSG00000181790 21 0 0 12 2 14.2857 ZNF696 0 genome.wustl.edu 37 8 144378511 144378511 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 144378511 144378511 G A SNP ZNF696 ENST00000330143 human ensembl 74_37 +1 known silent c.666 p.S222 0.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF696 HGNC ENSG00000185730 15 0 0 4 4 50 OPLAH 0 genome.wustl.edu 37 8 145112983 145112983 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 145112983 145112983 C T SNP OPLAH ENST00000426825 human ensembl 74_37 -1 known missense c.1018 p.V340I 0.249 pfam_Hydantoinase_A pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N - no_errors OPLAH HGNC ENSG00000178814 96 0 0 44 24 35.2941 SHARPIN 0 genome.wustl.edu 37 8 145160714 145160714 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 145160714 145160714 G A SNP SHARPIN ENST00000533184 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors SHARPIN HGNC ENSG00000179526 117 0 0 40 23 36.5079 TONSL 0 genome.wustl.edu 37 8 145666115 145666115 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 145666115 145666115 C T SNP TONSL ENST00000409379 human ensembl 74_37 -1 known missense c.1150 p.G384S 0.995 smart_TPR_repeat,pfscan_TPR-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt - no_errors TONSL HGNC ENSG00000160949 103 0 0 40 15 27.2727 CYHR1 0 genome.wustl.edu 37 8 145689777 145689777 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 145689777 145689777 G A SNP CYHR1 ENST00000306145 human ensembl 74_37 -1 known silent c.312 p.G104 0.858 NULL NULL - no_errors CYHR1 HGNC ENSG00000187954 68 0 0 27 14 34.1463 LRRC14 0 genome.wustl.edu 37 8 145746374 145746374 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 145746374 145746374 A G SNP LRRC14 ENST00000292524 human ensembl 74_37 +1 known missense c.994 p.S332G 0.893 NULL NULL - no_errors LRRC14 HGNC ENSG00000160959 183 0 0 84 40 32.2581 MTMR7 0 genome.wustl.edu 37 8 17230724 17230724 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 17230724 17230724 C T SNP MTMR7 ENST00000180173 human ensembl 74_37 -1 known missense c.50 p.R17Q 0.995 NULL pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase - no_errors MTMR7 HGNC ENSG00000003987 39 0 0 34 7 17.0732 ARHGEF10 0 genome.wustl.edu 37 8 1808263 1808263 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 1808263 1808263 G T SNP ARHGEF10 ENST00000398564 human ensembl 74_37 +1 known missense c.466 p.G156C 1.000 NULL pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain - no_errors ARHGEF10 HGNC ENSG00000104728 99 0 0 47 24 33.8028 LPL 0 genome.wustl.edu 37 8 19811791 19811791 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 19811791 19811791 G A SNP LPL ENST00000311322 human ensembl 74_37 +1 known silent c.702 p.P234 0.813 pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,tigrfam_Lipo_Lipase pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase - no_errors LPL HGNC ENSG00000175445 89 0 0 51 22 30.137 NEFL 0 genome.wustl.edu 37 8 24811732 24811732 + RNA SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 24811732 24811732 C T SNP NEFL ENST00000221169 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors NEFL HGNC ENSG00000104725 194 0 0 105 52 33.121 DOCK5 0 genome.wustl.edu 37 8 25159904 25159904 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 25159904 25159904 G T SNP DOCK5 ENST00000276440 human ensembl 74_37 +1 known missense c.910 p.G304C 1.000 NULL pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain - no_errors DOCK5 HGNC ENSG00000147459 27 0 0 13 2 13.3333 EBF2 0 genome.wustl.edu 37 8 25890600 25890600 + Splice_Site SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 25890600 25890600 C T SNP EBF2 ENST00000520164 human ensembl 74_37 -1 known splice_site c.551+1 e6+1 1.000 - - - no_errors EBF2 HGNC ENSG00000221818 113 0 0 67 6 8.21918 SDAD1P1 0 genome.wustl.edu 37 8 26238133 26238133 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 26238133 26238133 T C SNP SDAD1P1 ENST00000519902 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors SDAD1P1 HGNC ENSG00000228451 33 0 0 5 8 61.5385 PNMA2 0 genome.wustl.edu 37 8 26365784 26365784 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 26365784 26365784 C T SNP PNMA2 ENST00000522362 human ensembl 74_37 -1 known missense c.488 p.R163Q 0.989 NULL pfam_Retrotrans_gag_dom - no_errors PNMA2 HGNC ENSG00000240694 79 0 0 41 18 30.5085 ADRA1A 0 genome.wustl.edu 37 8 26721683 26721683 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 26721683 26721683 C A SNP ADRA1A ENST00000380586 human ensembl 74_37 -1 known missense c.804 p.K268N 1.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam - no_errors ADRA1A HGNC ENSG00000120907 55 0 0 19 8 29.6296 ELP3 0 genome.wustl.edu 37 8 27965470 27965470 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 27965470 27965470 A G SNP ELP3 ENST00000256398 human ensembl 74_37 +1 known missense c.370 p.T124A 0.987 pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,tigrfam_Hist_AcTrfase_ELP3 pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3 - no_errors ELP3 HGNC ENSG00000134014 49 0 0 46 6 11.5385 TEX15 0 genome.wustl.edu 37 8 30703130 30703130 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 30703130 30703130 T C SNP TEX15 ENST00000256246 human ensembl 74_37 -1 known missense c.3404 p.Q1135R 0.454 NULL NULL - no_errors TEX15 HGNC ENSG00000133863 67 0 0 53 6 10.1695 CSMD1 0 genome.wustl.edu 37 8 3245111 3245111 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 3245111 3245111 G T SNP CSMD1 ENST00000520002 human ensembl 74_37 -1 known missense c.2690 p.T897N 1.000 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP - no_errors CSMD1 HGNC ENSG00000183117 17 0 0 4 2 33.3333 KCNU1 0 genome.wustl.edu 37 8 36768479 36768479 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 36768479 36768479 C T SNP KCNU1 ENST00000399881 human ensembl 74_37 +1 known missense c.2363 p.A788V 0.063 NULL pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu - no_errors KCNU1 HGNC ENSG00000215262 121 0 0 76 25 24.7525 ASH2L 0 genome.wustl.edu 37 8 37986395 37986395 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 37986395 37986395 G A SNP ASH2L ENST00000343823 human ensembl 74_37 +1 known missense c.1453 p.V485I 0.555 pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY - no_errors ASH2L HGNC ENSG00000129691 363 0 0 200 97 32.6599 LETM2 0 genome.wustl.edu 37 8 38257862 38257862 + Missense_Mutation SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 38257862 38257862 A T SNP LETM2 ENST00000379957 human ensembl 74_37 +1 known missense c.718 p.M240L 1.000 pfam_LETM1 pfam_LETM1 - no_errors LETM2 HGNC ENSG00000165046 78 0 0 51 9 15 FGFR1 0 genome.wustl.edu 37 8 38271463 38271463 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 38271463 38271463 G A SNP FGFR1 ENST00000425967 human ensembl 74_37 -1 known silent c.2358 p.D786 1.000 pirsf_FGF_rcpt_fam,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors FGFR1 HGNC ENSG00000077782 40 0 0 30 5 14.2857 SLC20A2 0 genome.wustl.edu 37 8 42302235 42302235 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 42302235 42302235 A G SNP SLC20A2 ENST00000342228 human ensembl 74_37 -1 known missense c.659 p.F220S 0.002 pfam_Phos_transporter pfam_Phos_transporter - no_errors SLC20A2 HGNC ENSG00000168575 59 0 0 24 10 29.4118 CHRNB3 0 genome.wustl.edu 37 8 42587314 42587314 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 42587314 42587314 G A SNP CHRNB3 ENST00000289957 human ensembl 74_37 +1 known silent c.864 p.S288 0.103 pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel - no_errors CHRNB3 HGNC ENSG00000147432 142 0 0 88 29 24.7863 RNF170 0 genome.wustl.edu 37 8 42725159 42725159 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 42725159 42725159 G A SNP RNF170 ENST00000527424 human ensembl 74_37 -1 known missense c.310 p.H104Y 1.000 pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF170 HGNC ENSG00000120925 46 0 0 32 8 20 FNTA 0 genome.wustl.edu 37 8 42940419 42940419 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 42940419 42940419 G T SNP FNTA ENST00000302279 human ensembl 74_37 +1 known missense c.1134 p.Q378H 1.000 NULL pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a - no_errors FNTA HGNC ENSG00000168522 71 0 0 26 12 31.5789 EFCAB1 0 genome.wustl.edu 37 8 49647735 49647735 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 49647735 49647735 G A SNP EFCAB1 ENST00000521002 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors EFCAB1 HGNC ENSG00000034239 78 0 0 50 19 27.5362 TOX 0 genome.wustl.edu 37 8 59750825 59750825 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 59750825 59750825 G T SNP TOX ENST00000361421 human ensembl 74_37 -1 known missense c.739 p.P247T 1.000 superfamily_HMG_box_dom pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom - no_errors TOX HGNC ENSG00000198846 89 0 0 44 14 24.1379 BHLHE22 0 genome.wustl.edu 37 8 65494257 65494257 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 65494257 65494257 C T SNP BHLHE22 ENST00000321870 human ensembl 74_37 +1 known missense c.910 p.R304W 1.000 superfamily_bHLH_dom pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom - no_errors BHLHE22 HGNC ENSG00000180828 13 0 0 9 5 35.7143 RRS1 0 genome.wustl.edu 37 8 67342429 67342429 + Nonsense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 67342429 67342429 G T SNP RRS1 ENST00000320270 human ensembl 74_37 +1 known nonsense c.1063 p.G355* 0.998 NULL pfam_Ribosom_reg - no_errors RRS1 HGNC ENSG00000179041 143 0 0 96 16 14.2857 NCOA2 0 genome.wustl.edu 37 8 71069388 71069388 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 71069388 71069388 G T SNP NCOA2 ENST00000452400 human ensembl 74_37 -1 known silent c.1212 p.A404 1.000 pirsf_Nuclear_rcpt_coactivator pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom - no_errors NCOA2 HGNC ENSG00000140396 43 0 0 17 4 19.0476 TRPA1 0 genome.wustl.edu 37 8 72950232 72950232 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 72950232 72950232 G A SNP TRPA1 ENST00000262209 human ensembl 74_37 -1 known nonsense c.2371 p.Q791* 0.972 pfam_Ion_trans_dom pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors TRPA1 HGNC ENSG00000104321 38 0 0 24 5 17.2414 TRPA1 0 genome.wustl.edu 37 8 72969971 72969971 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 72969971 72969971 T C SNP TRPA1 ENST00000262209 human ensembl 74_37 -1 known silent c.1074 p.V358 0.975 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors TRPA1 HGNC ENSG00000104321 47 0 0 30 10 25 ZFHX4 0 genome.wustl.edu 37 8 77765588 77765588 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 77765588 77765588 T C SNP ZFHX4 ENST00000521891 human ensembl 74_37 +1 known missense c.6431 p.L2144P 1.000 pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2 - no_errors ZFHX4 HGNC ENSG00000091656 26 0 0 6 2 25 ZFHX4 0 genome.wustl.edu 37 8 77768464 77768464 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 77768464 77768464 G A SNP ZFHX4 ENST00000521891 human ensembl 74_37 +1 known missense c.9307 p.G3103S 1.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2 - no_errors ZFHX4 HGNC ENSG00000091656 87 0 0 60 5 7.69231 ZC2HC1A 0 genome.wustl.edu 37 8 79609723 79609723 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 79609723 79609723 G A SNP ZC2HC1A ENST00000263849 human ensembl 74_37 +1 known missense c.586 p.A196T 0.003 NULL NULL - no_errors ZC2HC1A HGNC ENSG00000104427 56 0 0 55 4 6.77966 RUNX1T1 0 genome.wustl.edu 37 8 93074895 93074895 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 93074895 93074895 G A SNP RUNX1T1 ENST00000517493 human ensembl 74_37 -1 known missense c.131 p.A44V 1.000 NULL NULL - no_errors RUNX1T1 HGNC ENSG00000079102 36 0 0 22 13 37.1429 PDP1 0 genome.wustl.edu 37 8 94934398 94934398 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 94934398 94934398 G A SNP PDP1 ENST00000396200 human ensembl 74_37 +1 known silent c.186 p.S62 0.006 NULL pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom - no_errors PDP1 HGNC ENSG00000164951 77 0 0 36 12 25 TNKS 0 genome.wustl.edu 37 8 9567764 9567764 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 9567764 9567764 A G SNP TNKS ENST00000520408 human ensembl 74_37 +1 putative missense c.1783 p.S595G 0.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors TNKS HGNC ENSG00000173273 34 0 0 14 5 26.3158 COL15A1 0 genome.wustl.edu 37 9 101824544 101824544 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 101824544 101824544 C T SNP COL15A1 ENST00000375001 human ensembl 74_37 +1 known silent c.3549 p.P1183 1.000 pfam_Collagenase_NC10/endostatin pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G - no_errors COL15A1 HGNC ENSG00000204291 100 0 0 77 5 6.09756 TMEM38B 0 genome.wustl.edu 37 9 108536306 108536306 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 108536306 108536306 C T SNP TMEM38B ENST00000374692 human ensembl 74_37 +1 known missense c.821 p.P274L 0.000 NULL pfam_TRIC_channel - no_errors TMEM38B HGNC ENSG00000095209 49 0 0 41 12 22.6415 PTPN3 0 genome.wustl.edu 37 9 112199206 112199206 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 112199206 112199206 G A SNP PTPN3 ENST00000374541 human ensembl 74_37 -1 known missense c.632 p.A211V 0.994 pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Band_41_fam,pfscan_FERM_domain pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPN3 HGNC ENSG00000070159 67 0 0 42 15 26.3158 SVEP1 0 genome.wustl.edu 37 9 113148241 113148241 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 113148241 113148241 C A SNP SVEP1 ENST00000401783 human ensembl 74_37 -1 known missense c.10174 p.G3392C 0.995 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin - no_errors SVEP1 HGNC ENSG00000165124 57 0 0 28 14 33.3333 C9orf43 0 genome.wustl.edu 37 9 116188008 116188008 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 116188008 116188008 A G SNP C9orf43 ENST00000288462 human ensembl 74_37 +1 known missense c.1028 p.Y343C 0.003 NULL NULL - no_errors C9orf43 HGNC ENSG00000157653 80 0 0 42 20 32.2581 COL27A1 0 genome.wustl.edu 37 9 116999956 116999956 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 116999956 116999956 C G SNP COL27A1 ENST00000356083 human ensembl 74_37 +1 known missense c.2688 p.D896E 1.000 pfam_Collagen pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL27A1 HGNC ENSG00000196739 90 0 0 38 16 29.6296 PAPPA 0 genome.wustl.edu 37 9 118950298 118950298 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 118950298 118950298 G A SNP PAPPA ENST00000328252 human ensembl 74_37 +1 known silent c.1281 p.E427 1.000 pfam_Notch_dom,smart_Notch_dom pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt - no_errors PAPPA HGNC ENSG00000182752 67 0 0 35 22 38.5965 ASTN2 0 genome.wustl.edu 37 9 120176844 120176844 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 120176844 120176844 T C SNP ASTN2 ENST00000313400 human ensembl 74_37 -1 known missense c.373 p.N125D 1.000 NULL pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF - no_errors ASTN2 HGNC ENSG00000148219 44 0 0 17 8 32 TLR4 0 genome.wustl.edu 37 9 120474741 120474741 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 120474741 120474741 A G SNP TLR4 ENST00000355622 human ensembl 74_37 +1 known missense c.335 p.N112S 1.000 pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom - no_errors TLR4 HGNC ENSG00000136869 39 0 0 27 6 18.1818 CDK5RAP2 0 genome.wustl.edu 37 9 123171411 123171411 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 123171411 123171411 A G SNP CDK5RAP2 ENST00000349780 human ensembl 74_37 -1 known missense c.4598 p.L1533P 0.998 NULL pfam_Spindle_assoc - no_errors CDK5RAP2 HGNC ENSG00000136861 94 0 0 51 21 29.1667 CDK5RAP2 0 genome.wustl.edu 37 9 123222895 123222895 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 123222895 123222895 G A SNP CDK5RAP2 ENST00000480112 human ensembl 74_37 -1 known missense c.2234 p.T745M 0.000 NULL pfam_Spindle_assoc,superfamily_Man6P_isomerase_rcpt-bd_dom - no_errors CDK5RAP2 HGNC ENSG00000136861 85 0 0 42 20 32.2581 FBXW2 0 genome.wustl.edu 37 9 123540802 123540802 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 123540802 123540802 T G SNP FBXW2 ENST00000608872 human ensembl 74_37 -1 known missense c.512 p.K171T 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors FBXW2 HGNC ENSG00000119402 39 0 0 18 2 10 DAB2IP 0 genome.wustl.edu 37 9 124519334 124519334 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 124519334 124519334 G A SNP DAB2IP ENST00000408936 human ensembl 74_37 +1 known silent c.405 p.E135 1.000 smart_Pleckstrin_homology pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP - no_errors DAB2IP HGNC ENSG00000136848 96 0 0 51 5 8.92857 TTLL11 0 genome.wustl.edu 37 9 124751596 124751596 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 124751596 124751596 T C SNP TTLL11 ENST00000321582 human ensembl 74_37 -1 known missense c.1417 p.K473E 1.000 pfam_TTL/TTLL_fam pfam_TTL/TTLL_fam - no_errors TTLL11 HGNC ENSG00000175764 75 0 0 61 4 6.15385 RC3H2 0 genome.wustl.edu 37 9 125621307 125621307 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 125621307 125621307 C T SNP RC3H2 ENST00000357244 human ensembl 74_37 -1 known missense c.1924 p.V642I 1.000 NULL pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING - no_errors RC3H2 HGNC ENSG00000056586 77 0 0 37 19 33.9286 CRB2 0 genome.wustl.edu 37 9 126133051 126133051 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 126133051 126133051 C T SNP CRB2 ENST00000373631 human ensembl 74_37 +1 known silent c.1719 p.D573 0.000 pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors CRB2 HGNC ENSG00000148204 97 0 0 37 21 36.2069 CRB2 0 genome.wustl.edu 37 9 126135794 126135794 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 126135794 126135794 T C SNP CRB2 ENST00000373631 human ensembl 74_37 +1 known missense c.2984 p.F995S 1.000 pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors CRB2 HGNC ENSG00000148204 19 0 0 7 5 41.6667 NR5A1 0 genome.wustl.edu 37 9 127255348 127255348 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 127255348 127255348 G A SNP NR5A1 ENST00000373588 human ensembl 74_37 -1 known silent c.951 p.H317 0.989 pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1 pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt - no_errors NR5A1 HGNC ENSG00000136931 25 0 0 18 4 18.1818 PBX3 0 genome.wustl.edu 37 9 128723070 128723070 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 128723070 128723070 C T SNP PBX3 ENST00000373489 human ensembl 74_37 +1 known silent c.951 p.H317 0.735 NULL pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors PBX3 HGNC ENSG00000167081 58 0 0 26 8 23.5294 PTRH1 0 genome.wustl.edu 37 9 130476255 130476255 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 130476255 130476255 G A SNP PTRH1 ENST00000456267 human ensembl 74_37 -1 known rna NULL NULL 0.034 - - - no_errors PTRH1 HGNC ENSG00000187024 17 0 0 12 5 29.4118 GLE1 0 genome.wustl.edu 37 9 131285932 131285932 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 131285932 131285932 G A SNP GLE1 ENST00000309971 human ensembl 74_37 +1 known missense c.704 p.R235Q 0.902 NULL pfam_GLE1 - no_errors GLE1 HGNC ENSG00000119392 102 0 0 45 14 23.7288 SPTAN1 0 genome.wustl.edu 37 9 131371238 131371238 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 131371238 131371238 G A SNP SPTAN1 ENST00000358161 human ensembl 74_37 +1 known missense c.4577 p.R1526H 1.000 pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain - no_errors SPTAN1 HGNC ENSG00000197694 189 0 0 113 63 35.7955 C9orf50 0 genome.wustl.edu 37 9 132375517 132375517 + Missense_Mutation SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 132375517 132375517 T A SNP C9orf50 ENST00000372478 human ensembl 74_37 -1 known missense c.1057 p.T353S 0.044 NULL NULL - no_errors C9orf50 HGNC ENSG00000179058 66 0 0 33 16 32.6531 ASS1 0 genome.wustl.edu 37 9 133355186 133355186 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 133355186 133355186 G A SNP ASS1 ENST00000352480 human ensembl 74_37 +1 known missense c.772 p.A258T 0.992 pfam_Arginosuc_synth,tigrfam_Arginosuc_synth pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth - no_errors ASS1 HGNC ENSG00000130707 102 0 0 44 18 29.0323 PRRC2B 0 genome.wustl.edu 37 9 134357808 134357808 + Missense_Mutation SNP G G C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 134357808 134357808 G C SNP PRRC2B ENST00000357304 human ensembl 74_37 +1 known missense c.5034 p.E1678D 1.000 NULL pfam_BAT2_N - no_errors PRRC2B HGNC ENSG00000130723 234 0 0 134 33 19.7605 GTF3C5 0 genome.wustl.edu 37 9 135919198 135919198 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 135919198 135919198 C T SNP GTF3C5 ENST00000372108 human ensembl 74_37 +1 known missense c.457 p.R153W 1.000 pfam_TF_IIIC_su-5 pfam_TF_IIIC_su-5 - no_errors GTF3C5 HGNC ENSG00000148308 132 0 0 74 28 27.451 ADAMTS13 0 genome.wustl.edu 37 9 136321690 136321690 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 136321690 136321690 G A SNP ADAMTS13 ENST00000371929 human ensembl 74_37 +1 known silent c.3741 p.R1247 0.974 superfamily_CUB_dom pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS13 HGNC ENSG00000160323 37 0 0 21 3 12.5 DBH 0 genome.wustl.edu 37 9 136501526 136501526 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 136501526 136501526 C T SNP DBH ENST00000393056 human ensembl 74_37 +1 known silent c.33 p.P11 0.151 NULL pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase - no_errors DBH HGNC ENSG00000123454 95 0 0 34 18 34.6154 FCN2 0 genome.wustl.edu 37 9 137779089 137779089 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 137779089 137779089 G T SNP FCN2 ENST00000291744 human ensembl 74_37 +1 known missense c.770 p.C257F 1.000 pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom - no_errors FCN2 HGNC ENSG00000160339 107 0 0 67 17 20.2381 PPP1R26 0 genome.wustl.edu 37 9 138376418 138376418 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 138376418 138376418 C T SNP PPP1R26 ENST00000356818 human ensembl 74_37 +1 known missense c.62 p.P21L 0.353 NULL NULL - no_errors PPP1R26 HGNC ENSG00000196422 90 0 0 28 13 31.7073 UBAC1 0 genome.wustl.edu 37 9 138839764 138839764 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 138839764 138839764 G A SNP UBAC1 ENST00000471163 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors UBAC1 HGNC ENSG00000130560 19 0 0 9 3 25 FAM69B 0 genome.wustl.edu 37 9 139617653 139617653 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 139617653 139617653 G A SNP FAM69B ENST00000371692 human ensembl 74_37 +1 known silent c.723 p.A241 0.032 pfam_FAM69_kinase_dom pfam_FAM69_kinase_dom - no_errors FAM69B HGNC ENSG00000165716 85 0 0 54 4 6.89655 LCN12 0 genome.wustl.edu 37 9 139847269 139847269 + RNA SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 139847269 139847269 G T SNP LCN12 ENST00000495410 human ensembl 74_37 +1 known rna NULL NULL 0.001 - - - no_errors LCN12 HGNC ENSG00000184925 32 0 0 11 4 26.6667 PNPLA7 0 genome.wustl.edu 37 9 140438216 140438216 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 140438216 140438216 G A SNP PNPLA7 ENST00000406427 human ensembl 74_37 -1 known missense c.325 p.R109W 0.997 NULL pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom - no_errors PNPLA7 HGNC ENSG00000130653 116 0 0 79 32 28.8288 CACNA1B 0 genome.wustl.edu 37 9 140846745 140846745 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 140846745 140846745 A G SNP CACNA1B ENST00000371355 human ensembl 74_37 +1 known missense c.986 p.N329S 1.000 pfam_Ion_trans_dom,prints_VDCCAlpha1 pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2 - no_errors CACNA1B HGNC ENSG00000148408 62 0 0 37 8 17.7778 FREM1 0 genome.wustl.edu 37 9 14784441 14784441 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 14784441 14784441 G A SNP FREM1 ENST00000380881 human ensembl 74_37 -1 known nonsense c.4372 p.Q1458* 1.000 NULL pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin - no_errors FREM1 HGNC ENSG00000164946 67 0 0 48 9 15.7895 FREM1 0 genome.wustl.edu 37 9 14842486 14842486 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 14842486 14842486 C T SNP FREM1 ENST00000380881 human ensembl 74_37 -1 known silent c.1569 p.P523 0.099 NULL pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin - no_errors FREM1 HGNC ENSG00000164946 115 1 0.862069 61 19 23.75 CBWD1 0 genome.wustl.edu 37 9 164038 164038 + Splice_Site SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 164038 164038 C G SNP CBWD1 ENST00000356521 human ensembl 74_37 -1 known splice_site c.431-1 e5-1 1.000 - - - no_errors CBWD1 HGNC ENSG00000172785 59 0 0 42 4 8.69565 BNC2 0 genome.wustl.edu 37 9 16437444 16437444 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 16437444 16437444 G A SNP BNC2 ENST00000380672 human ensembl 74_37 -1 known missense c.748 p.R250W 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors BNC2 HGNC ENSG00000173068 71 0 0 30 10 25 CNTLN 0 genome.wustl.edu 37 9 17330768 17330768 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 17330768 17330768 C T SNP CNTLN ENST00000380647 human ensembl 74_37 +1 known nonsense c.1480 p.R494* 0.043 NULL superfamily_Prefoldin - no_errors CNTLN HGNC ENSG00000044459 94 0 0 34 17 33.3333 IFNB1 0 genome.wustl.edu 37 9 21077644 21077644 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 21077644 21077644 G A SNP IFNB1 ENST00000380232 human ensembl 74_37 -1 known silent c.225 p.D75 0.000 pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta - no_errors IFNB1 HGNC ENSG00000171855 124 0 0 57 33 36.6667 IFNA4 0 genome.wustl.edu 37 9 21187385 21187385 + Missense_Mutation SNP T T G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 21187385 21187385 T G SNP IFNA4 ENST00000421715 human ensembl 74_37 -1 known missense c.146 p.H49P 0.002 pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta - no_errors IFNA4 HGNC ENSG00000236637 141 0 0 141 37 20.7865 IFNA13 0 genome.wustl.edu 37 9 21367439 21367439 + Nonstop_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 21367439 21367439 A G SNP IFNA13 ENST00000449498 human ensembl 74_37 -1 known nonstop c.571 p.*191Q 0.000 NULL pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta - no_errors IFNA13 HGNC ENSG00000233816 202 1 0.492611 106 40 27.3973 VLDLR 0 genome.wustl.edu 37 9 2646469 2646469 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 2646469 2646469 T C SNP VLDLR ENST00000382100 human ensembl 74_37 +1 known silent c.1620 p.A540 1.000 pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors VLDLR HGNC ENSG00000147852 68 0 0 51 16 23.8806 VCP 0 genome.wustl.edu 37 9 35059794 35059794 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 35059794 35059794 C T SNP VCP ENST00000358901 human ensembl 74_37 -1 known missense c.1700 p.R567H 1.000 pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48 pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48 - no_errors VCP HGNC ENSG00000165280 90 0 0 55 12 17.9104 ATP8B5P 0 genome.wustl.edu 37 9 35449925 35449925 + RNA SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 35449925 35449925 T C SNP ATP8B5P ENST00000430846 human ensembl 74_37 +1 known rna NULL NULL 0.012 - - - no_errors ATP8B5P HGNC ENSG00000179766 39 0 0 17 6 26.087 NPR2 0 genome.wustl.edu 37 9 35792815 35792815 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 35792815 35792815 G A SNP NPR2 ENST00000342694 human ensembl 74_37 +1 known missense c.410 p.R137H 0.462 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase - no_errors NPR2 HGNC ENSG00000159899 138 0 0 68 36 34.6154 CCIN 0 genome.wustl.edu 37 9 36170020 36170020 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 36170020 36170020 G A SNP CCIN ENST00000335119 human ensembl 74_37 +1 known missense c.521 p.R174H 1.000 pfam_BACK,smart_BACK pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like - no_errors CCIN HGNC ENSG00000185972 49 0 0 31 17 35.4167 SPATA31A6 0 genome.wustl.edu 37 9 43627207 43627207 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 43627207 43627207 C T SNP SPATA31A6 ENST00000332857 human ensembl 74_37 -1 known missense c.1480 p.E494K 0.001 NULL NULL - no_errors SPATA31A6 HGNC ENSG00000185775 591 1 0.168919 335 117 25.885 SLC1A1 0 genome.wustl.edu 37 9 4576594 4576594 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 4576594 4576594 C T SNP SLC1A1 ENST00000262352 human ensembl 74_37 +1 known missense c.1024 p.R342C 1.000 pfam_Na-dicarboxylate_symporter pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter - no_errors SLC1A1 HGNC ENSG00000106688 83 0 0 44 28 38.8889 JAK2 0 genome.wustl.edu 37 9 5080260 5080260 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 5080260 5080260 T C SNP JAK2 ENST00000381652 human ensembl 74_37 +1 known silent c.2163 p.P721 1.000 pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors JAK2 HGNC ENSG00000096968 175 0 0 120 12 9.09091 SMC5 0 genome.wustl.edu 37 9 72962062 72962062 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 72962062 72962062 G A SNP SMC5 ENST00000361138 human ensembl 74_37 +1 known silent c.2649 p.T883 0.314 pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase - no_errors SMC5 HGNC ENSG00000198887 26 0 0 31 6 16.2162 PCSK5 0 genome.wustl.edu 37 9 78911644 78911644 + Missense_Mutation SNP A A C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 78911644 78911644 A C SNP PCSK5 ENST00000545128 human ensembl 74_37 +1 known missense c.3386 p.E1129A 1.000 superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel - no_errors PCSK5 HGNC ENSG00000099139 41 0 0 24 8 25 PTPRD 0 genome.wustl.edu 37 9 8521488 8521488 + Silent SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 8521488 8521488 G A SNP PTPRD ENST00000356435 human ensembl 74_37 -1 known silent c.750 p.G250 0.997 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRD HGNC ENSG00000153707 113 0 0 54 29 34.9398 AGTPBP1 0 genome.wustl.edu 37 9 88203240 88203240 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 88203240 88203240 A G SNP AGTPBP1 ENST00000376109 human ensembl 74_37 -1 known missense c.2912 p.L971S 1.000 pfam_Peptidase_M14 pfam_Peptidase_M14,superfamily_ARM-type_fold - no_errors AGTPBP1 HGNC ENSG00000135049 50 0 0 16 11 40.7407 AGTPBP1 0 genome.wustl.edu 37 9 88287483 88287483 + Nonsense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 88287483 88287483 G A SNP AGTPBP1 ENST00000376109 human ensembl 74_37 -1 known nonsense c.706 p.R236* 1.000 superfamily_ARM-type_fold pfam_Peptidase_M14,superfamily_ARM-type_fold - no_errors AGTPBP1 HGNC ENSG00000135049 61 0 0 43 20 31.746 IARS 0 genome.wustl.edu 37 9 95030531 95030531 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 95030531 95030531 T C SNP IARS ENST00000375643 human ensembl 74_37 -1 known silent c.1356 p.A452 0.884 pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-ligase pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase - no_errors IARS HGNC ENSG00000196305 148 1 0.671141 99 46 31.7241 FGD3 0 genome.wustl.edu 37 9 95768325 95768325 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 95768325 95768325 G A SNP FGD3 ENST00000337352 human ensembl 74_37 +1 known missense c.700 p.G234R 1.000 pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain - no_errors FGD3 HGNC ENSG00000127084 227 0 0 100 55 35.4839 PTCH1 0 genome.wustl.edu 37 9 98241295 98241295 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 98241295 98241295 C A SNP PTCH1 ENST00000331920 human ensembl 74_37 -1 known missense c.1202 p.R401M 1.000 pfam_Patched,tigrfam_TM_rcpt_patched pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched - no_errors PTCH1 HGNC ENSG00000185920 51 0 0 16 15 48.3871 HABP4 0 genome.wustl.edu 37 9 99220669 99220669 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 99220669 99220669 C T SNP HABP4 ENST00000375249 human ensembl 74_37 +1 known missense c.358 p.R120W 1.000 NULL pfam_HABP4_PAIRBP1-bd - no_errors HABP4 HGNC ENSG00000130956 157 0 0 87 26 23.0088 CLCN4 0 genome.wustl.edu 37 X 10166025 10166025 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 10166025 10166025 C T SNP CLCN4 ENST00000380833 human ensembl 74_37 +1 known missense c.479 p.A160V 1.000 superfamily_Cl-channel_core pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-4 - no_errors CLCN4 HGNC ENSG00000073464 59 0 0 36 17 32.0755 MID1 0 genome.wustl.edu 37 X 10437743 10437743 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 10437743 10437743 C T SNP MID1 ENST00000317552 human ensembl 74_37 -1 known missense c.1279 p.V427I 0.998 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin - no_errors MID1 HGNC ENSG00000101871 76 0 0 16 22 57.8947 COL4A5 0 genome.wustl.edu 37 X 107925066 107925066 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 107925066 107925066 C T SNP COL4A5 ENST00000328300 human ensembl 74_37 +1 known silent c.4164 p.G1388 0.010 pfam_Collagen pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC - no_errors COL4A5 HGNC ENSG00000188153 30 0 0 7 9 56.25 CHRDL1 0 genome.wustl.edu 37 X 109924819 109924819 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 109924819 109924819 C T SNP CHRDL1 ENST00000372042 human ensembl 74_37 -1 known missense c.1047 p.M349I 0.998 NULL pfam_VWF_C,smart_VWF_C,pfscan_VWF_C - no_errors CHRDL1 HGNC ENSG00000101938 62 0 0 27 17 38.6364 ALG13 0 genome.wustl.edu 37 X 110928333 110928333 + Splice_Site SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 110928333 110928333 T C SNP ALG13 ENST00000251943 human ensembl 74_37 +1 known splice_site c.71+2 e1+2 1.000 - - - no_errors ALG13 HGNC ENSG00000101901 171 0 0 111 10 8.26446 LUZP4 0 genome.wustl.edu 37 X 114541133 114541133 + Nonsense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 114541133 114541133 G T SNP LUZP4 ENST00000371920 human ensembl 74_37 +1 known nonsense c.706 p.G236* 0.001 NULL NULL - no_errors LUZP4 HGNC ENSG00000102021 69 0 0 42 4 8.69565 IL13RA1 0 genome.wustl.edu 37 X 117910472 117910472 + Missense_Mutation SNP C C G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 117910472 117910472 C G SNP IL13RA1 ENST00000371666 human ensembl 74_37 +1 known missense c.1189 p.L397V 0.998 NULL pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3 - no_errors IL13RA1 HGNC ENSG00000131724 12 0 0 2 9 81.8182 ZCCHC12 0 genome.wustl.edu 37 X 117959502 117959502 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 117959502 117959502 C T SNP ZCCHC12 ENST00000310164 human ensembl 74_37 +1 known missense c.295 p.R99C 0.978 NULL superfamily_Znf_CCHC - no_errors ZCCHC12 HGNC ENSG00000174460 159 0 0 53 37 41.1111 SOWAHD 0 genome.wustl.edu 37 X 118893547 118893547 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 118893547 118893547 G A SNP SOWAHD ENST00000343905 human ensembl 74_37 +1 known missense c.917 p.R306H 0.666 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors SOWAHD HGNC ENSG00000187808 30 0 0 9 17 65.3846 CT47B1 0 genome.wustl.edu 37 X 120009386 120009386 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 120009386 120009386 G A SNP CT47B1 ENST00000371311 human ensembl 74_37 -1 known missense c.139 p.P47S 0.000 NULL NULL - no_errors CT47B1 HGNC ENSG00000236446 94 0 0 40 8 16.6667 STAG2 0 genome.wustl.edu 37 X 123205131 123205131 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 123205131 123205131 G A SNP STAG2 ENST00000218089 human ensembl 74_37 +1 known missense c.2491 p.D831N 1.000 NULL pfam_STAG,superfamily_ARM-type_fold - no_errors STAG2 HGNC ENSG00000101972 71 0 0 17 24 58.5366 ZNF280C 0 genome.wustl.edu 37 X 129380891 129380891 + Missense_Mutation SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 129380891 129380891 C A SNP ZNF280C ENST00000370978 human ensembl 74_37 -1 known missense c.120 p.E40D 0.944 NULL smart_Znf_C2H2-like - no_errors ZNF280C HGNC ENSG00000056277 106 0 0 24 39 61.9048 SAGE1 0 genome.wustl.edu 37 X 134989590 134989590 + Silent SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 134989590 134989590 G T SNP SAGE1 ENST00000324447 human ensembl 74_37 +1 known silent c.996 p.P332 0.000 NULL NULL - no_errors SAGE1 HGNC ENSG00000181433 71 0 0 29 28 49.1228 ATP11C 0 genome.wustl.edu 37 X 138811117 138811117 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 138811117 138811117 G A SNP ATP11C ENST00000361648 human ensembl 74_37 -1 known missense c.3302 p.P1101L 0.675 NULL pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP11C HGNC ENSG00000101974 29 0 0 10 7 41.1765 LDOC1 0 genome.wustl.edu 37 X 140271029 140271029 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 140271029 140271029 C T SNP LDOC1 ENST00000370526 human ensembl 74_37 -1 known missense c.178 p.E60K 0.998 NULL NULL - no_errors LDOC1 HGNC ENSG00000182195 37 0 0 5 7 58.3333 SLITRK4 0 genome.wustl.edu 37 X 142718541 142718541 + Silent SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 142718541 142718541 A T SNP SLITRK4 ENST00000338017 human ensembl 74_37 -1 known silent c.384 p.L128 1.000 smart_Leu-rich_rpt_typical-subtyp pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C - no_errors SLITRK4 HGNC ENSG00000179542 53 0 0 18 24 57.1429 CSF2RA 0 genome.wustl.edu 37 X 1428506 1428506 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 1428506 1428506 G A SNP CSF2RA ENST00000498153 human ensembl 74_37 +1 known rna NULL NULL 0.027 - - - no_errors CSF2RA HGNC ENSG00000198223 65 0 0 27 9 25 AFF2 0 genome.wustl.edu 37 X 147891442 147891442 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 147891442 147891442 C T SNP AFF2 ENST00000370460 human ensembl 74_37 +1 known missense c.1084 p.R362W 1.000 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF2 HGNC ENSG00000155966 51 0 0 51 3 5.55556 MOSPD2 0 genome.wustl.edu 37 X 14933801 14933801 + Silent SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 14933801 14933801 A G SNP MOSPD2 ENST00000380492 human ensembl 74_37 +1 known silent c.1101 p.T367 0.373 pfam_MSP_dom,superfamily_PapD-like,pfscan_MSP_dom pfam_CRAL-TRIO_dom,pfam_MSP_dom,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_MSP_dom - no_errors MOSPD2 HGNC ENSG00000130150 76 0 0 89 5 5.31915 GABRQ 0 genome.wustl.edu 37 X 151821314 151821314 + Missense_Mutation SNP G G T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 151821314 151821314 G T SNP GABRQ ENST00000370306 human ensembl 74_37 +1 known missense c.1469 p.G490V 0.000 pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel - no_errors GABRQ HGNC ENSG00000147402 71 0 0 29 28 49.1228 PDZD4 0 genome.wustl.edu 37 X 153071027 153071027 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 153071027 153071027 G A SNP PDZD4 ENST00000164640 human ensembl 74_37 -1 known missense c.584 p.A195V 1.000 pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors PDZD4 HGNC ENSG00000067840 73 0 0 13 34 72.3404 RPL10 0 genome.wustl.edu 37 X 153627879 153627879 + Missense_Mutation SNP A A G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 153627879 153627879 A G SNP RPL10 ENST00000344746 human ensembl 74_37 +1 known missense c.134 p.E45G 1.000 pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e - no_errors RPL10 HGNC ENSG00000147403 94 0 0 60 5 7.69231 SPRY3 0 genome.wustl.edu 37 X 155004072 155004072 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 155004072 155004072 G A SNP SPRY3 ENST00000302805 human ensembl 74_37 +1 known missense c.539 p.S180N 1.000 pfam_Sprouty pfam_Sprouty - no_errors SPRY3 HGNC ENSG00000168939 159 0 0 90 36 28.5714 PLCXD1 0 genome.wustl.edu 37 X 215873 215873 + Silent SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 215873 215873 C T SNP PLCXD1 ENST00000381657 human ensembl 74_37 +1 known silent c.843 p.S281 0.005 superfamily_PLC-like_Pdiesterase_TIM-brl pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom - no_errors PLCXD1 HGNC ENSG00000182378 75 0 0 25 25 50 USP9X 0 genome.wustl.edu 37 X 41027442 41027442 + Silent SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 41027442 41027442 T C SNP USP9X ENST00000324545 human ensembl 74_37 +1 known silent c.2607 p.H869 1.000 NULL pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67 - no_errors USP9X HGNC ENSG00000124486 40 0 0 11 18 62.069 RBM10 0 genome.wustl.edu 37 X 47044482 47044482 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 47044482 47044482 G A SNP RBM10 ENST00000377604 human ensembl 74_37 +1 known missense c.1979 p.R660H 1.000 NULL pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom - no_errors RBM10 HGNC ENSG00000182872 14 0 0 3 2 40 CFP 0 genome.wustl.edu 37 X 47485906 47485906 + Nonsense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 47485906 47485906 C T SNP CFP ENST00000247153 human ensembl 74_37 -1 known nonsense c.953 p.W318* 0.998 superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt - no_errors CFP HGNC ENSG00000126759 42 0 0 13 12 48 DGKK 0 genome.wustl.edu 37 X 50146591 50146591 + RNA SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 50146591 50146591 G A SNP DGKK ENST00000376025 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors DGKK HGNC ENSG00000204466 51 0 0 16 20 55.5556 CXorf67 0 genome.wustl.edu 37 X 51150061 51150061 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 51150061 51150061 G A SNP CXorf67 ENST00000342995 human ensembl 74_37 +1 known missense c.193 p.A65T 0.000 NULL NULL - no_errors CXorf67 HGNC ENSG00000187690 21 0 0 11 9 45 FGD1 0 genome.wustl.edu 37 X 54473854 54473854 + Missense_Mutation SNP T T C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 54473854 54473854 T C SNP FGD1 ENST00000375135 human ensembl 74_37 -1 known missense c.2470 p.I824V 0.995 smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain - no_errors FGD1 HGNC ENSG00000102302 18 0 0 7 6 46.1538 ITIH6 0 genome.wustl.edu 37 X 54776440 54776440 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 54776440 54776440 C T SNP ITIH6 ENST00000218436 human ensembl 74_37 -1 known missense c.3830 p.R1277K 0.998 NULL pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A - no_errors ITIH6 HGNC ENSG00000102313 27 0 0 9 9 50 PAGE3 0 genome.wustl.edu 37 X 55287036 55287036 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 55287036 55287036 G A SNP PAGE3 ENST00000374951 human ensembl 74_37 -1 known missense c.250 p.R84C 0.002 pfam_GAGE pfam_GAGE - no_errors PAGE3 HGNC ENSG00000204279 25 0 0 15 4 21.0526 AWAT2 0 genome.wustl.edu 37 X 69261775 69261775 + Silent SNP T T A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 69261775 69261775 T A SNP AWAT2 ENST00000276101 human ensembl 74_37 -1 known silent c.885 p.P295 0.093 pfam_DAGAT pfam_DAGAT - no_errors AWAT2 HGNC ENSG00000147160 50 0 0 16 15 48.3871 P2RY4 0 genome.wustl.edu 37 X 69478728 69478728 + Silent SNP C C A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 69478728 69478728 C A SNP P2RY4 ENST00000374519 human ensembl 74_37 -1 known silent c.747 p.V249 0.999 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt - no_errors P2RY4 HGNC ENSG00000186912 24 0 0 5 6 54.5455 TAF1 0 genome.wustl.edu 37 X 70598812 70598812 + Missense_Mutation SNP C C T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 70598812 70598812 C T SNP TAF1 ENST00000449580 human ensembl 74_37 +1 known missense c.1288 p.R430C 1.000 pirsf_TAF1_animal pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors TAF1 HGNC ENSG00000147133 110 0 0 33 57 63.3333 TAF1 0 genome.wustl.edu 37 X 70618466 70618466 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 70618466 70618466 G A SNP TAF1 ENST00000449580 human ensembl 74_37 +1 known missense c.3662 p.R1221Q 1.000 pirsf_TAF1_animal pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors TAF1 HGNC ENSG00000147133 30 0 0 10 8 44.4444 PCDH11X 0 genome.wustl.edu 37 X 91873632 91873632 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 91873632 91873632 G A SNP PCDH11X ENST00000373094 human ensembl 74_37 +1 known missense c.3737 p.S1246N 0.653 NULL pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH11X HGNC ENSG00000102290 94 0 0 57 4 6.55738 SHROOM2 0 genome.wustl.edu 37 X 9862480 9862480 + Missense_Mutation SNP G G A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 9862480 9862480 G A SNP SHROOM2 ENST00000380913 human ensembl 74_37 +1 known missense c.532 p.V178I 0.932 NULL pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SHROOM2 HGNC ENSG00000146950 43 0 0 12 18 60 TXLNG2P 0 genome.wustl.edu 37 Y 21764105 21764105 + RNA SNP A A T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb Y 21764105 21764105 A T SNP TXLNG2P ENST00000253320 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors TXLNG2P HGNC ENSG00000131002 10 0 0 2 2 50 COL11A1 0 genome.wustl.edu 37 1 103474066 103474067 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 103474066 103474067 - C INS COL11A1 ENST00000358392 human ensembl 74_37 -1 known frame_shift_ins c.1672_1671 p.P557fs 1.000:0.000 pfam_Collagen pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL11A1 HGNC ENSG00000060718 102 0 0 85 21 19.8113 GPSM2 0 genome.wustl.edu 37 1 109466682 109466683 + Frame_Shift_Del DEL CA CA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CA CA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 109466682 109466683 CA - DEL GPSM2 ENST00000264126 human ensembl 74_37 +1 known frame_shift_del c.1661_1662 p.Q555fs 0.985:0.492 pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors GPSM2 HGNC ENSG00000121957 108 0 0 90 15 14.2857 SYCP1 0 genome.wustl.edu 37 1 115537601 115537601 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 115537601 115537601 A - DEL SYCP1 ENST00000369518 human ensembl 74_37 +1 known frame_shift_del c.2892 p.K967fs 1.000 NULL pfam_SCP-1 - no_errors SYCP1 HGNC ENSG00000198765 49 0 0 18 10 35.7143 NOTCH2 0 genome.wustl.edu 37 1 120539849 120539850 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 120539849 120539850 - A INS NOTCH2 ENST00000256646 human ensembl 74_37 -1 known frame_shift_ins c.522_521 p.T175fs 1.000:1.000 pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom - no_errors NOTCH2 HGNC ENSG00000134250 155 0 0 133 23 14.7436 MXRA8 0 genome.wustl.edu 37 1 1290109 1290110 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 1290109 1290110 - G INS MXRA8 ENST00000445648 human ensembl 74_37 -1 known frame_shift_ins c.902_901 p.R301fs 0.000:0.000 NULL pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom - no_errors MXRA8 HGNC ENSG00000162576 27 0 0 14 2 12.5 CCNL2 0 genome.wustl.edu 37 1 1322609 1322617 + In_Frame_Del DEL CCTCACCTC CCTCACCTC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CCTCACCTC CCTCACCTC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 1322609 1322617 CCTCACCTC - DEL CCNL2 ENST00000400809 human ensembl 74_37 -1 known in_frame_del c.1565_1557 p.R*520in_frame_del 0.677:0.988:1.000:1.000:1.000:1.000:1.000:0.862:0.789 pirsf_Cyclin_L pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L - no_errors CCNL2 HGNC ENSG00000221978 189 0 0 104 9 7.9646 ENSG00000255168 0 genome.wustl.edu 37 1 145281380 145281381 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 145281380 145281381 - A INS ENSG00000255168 ENST00000468030 human ensembl 74_37 +1 known frame_shift_ins c.310_311 p.W105fs 0.921:0.889 pfscan_EG-like_dom pfam_EG-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom - no_errors RP11-458D21.5 Clone_based_vega_gene ENSG00000255168 778 0 0 688 39 5.36451 BCL9 0 genome.wustl.edu 37 1 147091500 147091501 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 147091500 147091501 - C INS BCL9 ENST00000234739 human ensembl 74_37 +1 known frame_shift_ins c.1539_1540 p.P516fs 1.000:1.000 NULL pfam_BCL9_beta-catenin-bd_dom - no_errors BCL9 HGNC ENSG00000116128 147 0 0 123 23 15.7534 VPS45 0 genome.wustl.edu 37 1 150082564 150082564 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 150082564 150082564 T - DEL VPS45 ENST00000484306 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors VPS45 HGNC ENSG00000136631 21 0 0 10 6 37.5 MEF2D 0 genome.wustl.edu 37 1 156449123 156449123 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 156449123 156449123 C - DEL MEF2D ENST00000348159 human ensembl 74_37 -1 known frame_shift_del c.623 p.G208fs 1.000 NULL pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox - no_errors MEF2D HGNC ENSG00000116604 47 0 0 20 6 23.0769 OR10Z1 0 genome.wustl.edu 37 1 158576757 158576757 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 158576757 158576757 T - DEL OR10Z1 ENST00000361284 human ensembl 74_37 +1 known frame_shift_del c.529 p.C179fs 0.950 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR10Z1 HGNC ENSG00000198967 130 1 0.763359 93 20 17.6991 SLAMF1 0 genome.wustl.edu 37 1 160589601 160589601 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 160589601 160589601 T - DEL SLAMF1 ENST00000302035 human ensembl 74_37 -1 known frame_shift_del c.829 p.S277fs 0.881 NULL pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom - no_errors SLAMF1 HGNC ENSG00000117090 179 0 0 124 29 18.9542 SPEN 0 genome.wustl.edu 37 1 16258928 16258928 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 16258928 16258928 A - DEL SPEN ENST00000375759 human ensembl 74_37 +1 known frame_shift_del c.6193 p.K2066fs 1.000 NULL pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom - no_errors SPEN HGNC ENSG00000065526 57 0 0 49 12 19.6721 RABGAP1L 0 genome.wustl.edu 37 1 174671277 174671277 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 174671277 174671277 T - DEL RABGAP1L ENST00000251507 human ensembl 74_37 +1 known frame_shift_del c.2052 p.S686fs 0.944 pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom - no_errors RABGAP1L HGNC ENSG00000152061 94 0 0 47 28 37.3333 PAPPA2 0 genome.wustl.edu 37 1 176563964 176563964 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 176563964 176563964 G - DEL PAPPA2 ENST00000367662 human ensembl 74_37 +1 known frame_shift_del c.1224 p.G410fs 0.990 superfamily_ConA-like_lec_gl_sf,smart_LamG-like pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt - no_errors PAPPA2 HGNC ENSG00000116183 185 0 0 140 18 11.3924 NPHS2 0 genome.wustl.edu 37 1 179528880 179528881 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 179528880 179528881 - A INS NPHS2 ENST00000367615 human ensembl 74_37 -1 known frame_shift_ins c.468_467 p.L156fs 0.999:1.000 pfam_Band_7,smart_Band_7 pfam_Band_7,smart_Band_7,prints_Stomatin - no_errors NPHS2 HGNC ENSG00000116218 10 0 0 7 5 41.6667 SHCBP1L 0 genome.wustl.edu 37 1 182908370 182908370 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 182908370 182908370 T - DEL SHCBP1L ENST00000367547 human ensembl 74_37 -1 known frame_shift_del c.1017 p.K339fs 0.996 NULL superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1 - no_errors SHCBP1L HGNC ENSG00000157060 103 0 0 65 16 19.7531 TRMT1L 0 genome.wustl.edu 37 1 185109329 185109329 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 185109329 185109329 T - DEL TRMT1L ENST00000367506 human ensembl 74_37 -1 known frame_shift_del c.885 p.K295fs 0.999 pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2 pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors TRMT1L HGNC ENSG00000121486 45 0 0 28 10 26.3158 HMCN1 0 genome.wustl.edu 37 1 185897784 185897784 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 185897784 185897784 T - DEL HMCN1 ENST00000271588 human ensembl 74_37 +1 known frame_shift_del c.1537 p.F514fs 0.999 smart_Ig_sub,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom - no_errors HMCN1 HGNC ENSG00000143341 177 0 0 131 41 23.8372 UBR4 0 genome.wustl.edu 37 1 19449428 19449429 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 19449428 19449429 - A INS UBR4 ENST00000375267 human ensembl 74_37 -1 known frame_shift_ins c.9715_9714 p.G3238fs 0.995:0.740 superfamily_ARM-type_fold superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin - no_errors UBR4 HGNC ENSG00000127481 122 0 0 94 26 21.6667 ZBTB41 0 genome.wustl.edu 37 1 197168526 197168526 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 197168526 197168526 T - DEL ZBTB41 ENST00000367405 human ensembl 74_37 -1 known frame_shift_del c.1078 p.I360fs 0.941 NULL pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB41 HGNC ENSG00000177888 63 0 0 48 20 29.4118 KIF14 0 genome.wustl.edu 37 1 200561296 200561296 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 200561296 200561296 T - DEL KIF14 ENST00000367350 human ensembl 74_37 -1 known frame_shift_del c.2725 p.R909fs 0.011 NULL pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF14 HGNC ENSG00000118193 76 0 0 37 10 21.2766 CAMSAP2 0 genome.wustl.edu 37 1 200827020 200827020 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 200827020 200827020 A - DEL CAMSAP2 ENST00000236925 human ensembl 74_37 +1 known frame_shift_del c.4303 p.M1437fs 1.000 pfam_CKK_domain,superfamily_PRC_barrel-like pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain - no_errors CAMSAP2 HGNC ENSG00000118200 78 0 0 33 13 28.2609 PLEKHA6 0 genome.wustl.edu 37 1 204228411 204228411 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 204228411 204228411 C - DEL PLEKHA6 ENST00000272203 human ensembl 74_37 -1 known frame_shift_del c.982 p.V328fs 0.000 NULL pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors PLEKHA6 HGNC ENSG00000143850 70 0 0 39 13 25 TRAF3IP3 0 genome.wustl.edu 37 1 209933542 209933543 + Frame_Shift_Del DEL AG AG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 209933542 209933543 AG - DEL TRAF3IP3 ENST00000367024 human ensembl 74_37 +1 known frame_shift_del c.158_159 p.E55fs 0.231:0.000 NULL NULL - no_errors TRAF3IP3 HGNC ENSG00000009790 77 0 0 34 11 24.4444 EPHA8 0 genome.wustl.edu 37 1 22915491 22915491 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 22915491 22915491 C - DEL EPHA8 ENST00000166244 human ensembl 74_37 +1 known frame_shift_del c.1107 p.W371fs 1.000 pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom - no_errors EPHA8 HGNC ENSG00000070886 14 0 0 9 2 18.1818 TARBP1 0 genome.wustl.edu 37 1 234614801 234614801 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 234614801 234614801 G - DEL TARBP1 ENST00000040877 human ensembl 74_37 -1 novel frame_shift_del c.49 p.R17fs 0.000 NULL pfam_SpoU_MeTrfase,superfamily_ARM-type_fold - no_errors TARBP1 HGNC ENSG00000059588 27 0 0 16 3 15.7895 ARID4B 0 genome.wustl.edu 37 1 235345233 235345233 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 235345233 235345233 T - DEL ARID4B ENST00000264183 human ensembl 74_37 -1 known frame_shift_del c.3001 p.T1001fs 0.000 NULL pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID4B HGNC ENSG00000054267 177 0 0 133 17 11.3333 GPR137B 0 genome.wustl.edu 37 1 236306034 236306034 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 236306034 236306034 C - DEL GPR137B ENST00000366592 human ensembl 74_37 +1 known frame_shift_del c.112 p.Y40fs 1.000 NULL NULL - no_errors GPR137B HGNC ENSG00000077585 34 0 0 8 5 38.4615 GPR137B 0 genome.wustl.edu 37 1 236306298 236306298 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 236306298 236306298 T - DEL GPR137B ENST00000366592 human ensembl 74_37 +1 known frame_shift_del c.376 p.F127fs 1.000 NULL NULL - no_errors GPR137B HGNC ENSG00000077585 175 0 0 113 22 16.2963 MAN1C1 0 genome.wustl.edu 37 1 25944452 25944452 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 25944452 25944452 C - DEL MAN1C1 ENST00000374332 human ensembl 74_37 +1 known frame_shift_del c.164 p.R57fs 0.925 NULL pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47 - no_errors MAN1C1 HGNC ENSG00000117643 146 0 0 88 8 8.33333 ARID1A 0 genome.wustl.edu 37 1 27105931 27105931 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 27105931 27105931 G - DEL ARID1A ENST00000324856 human ensembl 74_37 +1 known frame_shift_del c.5542 p.D1850fs 1.000 NULL pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID1A HGNC ENSG00000117713 219 0 0 141 32 18.4971 WDTC1 0 genome.wustl.edu 37 1 27621108 27621108 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 27621108 27621108 G - DEL WDTC1 ENST00000319394 human ensembl 74_37 +1 known frame_shift_del c.861 p.E290fs 1.000 superfamily_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDTC1 HGNC ENSG00000142784 65 0 0 37 16 30.1887 STX12 0 genome.wustl.edu 37 1 28099854 28099854 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 28099854 28099854 G - DEL STX12 ENST00000373943 human ensembl 74_37 +1 known frame_shift_del c.36 p.S15fs 1.000 smart_Syntaxin_N pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom - no_errors STX12 HGNC ENSG00000117758 22 0 0 11 6 35.2941 ZMYM4 0 genome.wustl.edu 37 1 35824656 35824656 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 35824656 35824656 T - DEL ZMYM4 ENST00000314607 human ensembl 74_37 +1 known frame_shift_del c.216 p.L74fs 1.000 NULL pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom - no_errors ZMYM4 HGNC ENSG00000146463 111 0 0 57 17 22.973 MAP7D1 0 genome.wustl.edu 37 1 36636626 36636626 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 36636626 36636626 C - DEL MAP7D1 ENST00000373151 human ensembl 74_37 +1 known frame_shift_del c.101 p.P36fs 0.090 NULL pfam_MAP7 - no_errors MAP7D1 HGNC ENSG00000116871 160 0 0 109 27 19.8529 KIAA0754 0 genome.wustl.edu 37 1 39877724 39877724 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 39877724 39877724 A - DEL KIAA0754 ENST00000530275 human ensembl 74_37 +1 known frame_shift_del c.1379 p.K461fs 0.000 NULL NULL - no_errors KIAA0754 HGNC ENSG00000255103 99 0 0 51 15 22.7273 TIE1 0 genome.wustl.edu 37 1 43766758 43766758 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 43766758 43766758 C - DEL TIE1 ENST00000372476 human ensembl 74_37 +1 known frame_shift_del c.16 p.P7fs 0.000 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors TIE1 HGNC ENSG00000066056 85 0 0 67 10 12.987 RNF220 0 genome.wustl.edu 37 1 44878287 44878287 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 44878287 44878287 C - DEL RNF220 ENST00000355387 human ensembl 74_37 +1 known frame_shift_del c.518 p.G175fs 1.000 NULL superfamily_Peptidase_M20_dimer,pfscan_Znf_RING - no_errors RNF220 HGNC ENSG00000187147 90 0 0 66 23 25.8427 BEND5 0 genome.wustl.edu 37 1 49201967 49201967 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 49201967 49201967 T - DEL BEND5 ENST00000371833 human ensembl 74_37 -1 known frame_shift_del c.1052 p.K351fs 1.000 pfam_BEN_domain pfam_BEN_domain - no_errors BEND5 HGNC ENSG00000162373 106 0 0 59 22 27.1605 CC2D1B 0 genome.wustl.edu 37 1 52827212 52827213 + In_Frame_Ins INS - - TCC TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 52827212 52827213 - TCC INS CC2D1B ENST00000371586 human ensembl 74_37 -1 known in_frame_ins c.291_290 p.98in_frame_insE 0.997:0.999 NULL pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom - no_errors CC2D1B HGNC ENSG00000154222 67 0 0 54 7 11.4754 C1orf141 0 genome.wustl.edu 37 1 67561987 67561988 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 67561987 67561988 - T INS C1orf141 ENST00000371006 human ensembl 74_37 -1 known frame_shift_ins c.364_363 p.P121fs 0.000:0.000 NULL NULL - no_errors C1orf141 HGNC ENSG00000203963 13 0 0 18 7 28 CAMTA1 0 genome.wustl.edu 37 1 6885239 6885240 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 6885239 6885240 - A INS CAMTA1 ENST00000303635 human ensembl 74_37 +1 known frame_shift_ins c.203_204 p.E70fs 1.000:0.977 pfam_CG-1_dom pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS - no_errors CAMTA1 HGNC ENSG00000171735 76 0 0 37 6 13.9535 ST6GALNAC5 0 genome.wustl.edu 37 1 77510209 77510209 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 77510209 77510209 G - DEL ST6GALNAC5 ENST00000477717 human ensembl 74_37 +1 known frame_shift_del c.582 p.V195fs 1.000 pfam_Glyco_trans_29,pirsf_Sialyl_trans pfam_Glyco_trans_29,pirsf_Sialyl_trans - no_errors ST6GALNAC5 HGNC ENSG00000117069 274 0 0 141 33 18.9655 CDC7 0 genome.wustl.edu 37 1 91967357 91967357 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 91967357 91967357 A - DEL CDC7 ENST00000234626 human ensembl 74_37 +1 known frame_shift_del c.84 p.N31fs 0.083 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors CDC7 HGNC ENSG00000097046 94 0 0 63 14 18.1818 LOC101930643 0 genome.wustl.edu 37 1 93730225 93730225 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 93730225 93730225 T - DEL LOC101930643 ENST00000415150 human ensembl 74_37 -1 known rna NULL NULL 0.002 - - - no_errors RP4-717I23.3 Clone_based_vega_gene ENSG00000223745 52 0 0 17 10 37.037 FNBP1L 0 genome.wustl.edu 37 1 94016650 94016650 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 94016650 94016650 A - DEL FNBP1L ENST00000271234 human ensembl 74_37 +1 known frame_shift_del c.1798 p.N601fs 1.000 NULL pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain - no_errors FNBP1L HGNC ENSG00000137942 22 0 0 20 2 9.09091 DPYD 0 genome.wustl.edu 37 1 97771791 97771791 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 1 97771791 97771791 A - DEL DPYD ENST00000370192 human ensembl 74_37 -1 known frame_shift_del c.2121 p.F707fs 1.000 pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH - no_errors DPYD HGNC ENSG00000188641 159 1 0.625 130 43 24.8555 PDZD7 0 genome.wustl.edu 37 10 102789810 102789811 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 102789810 102789811 - G INS PDZD7 ENST00000370215 human ensembl 74_37 -1 known frame_shift_ins c.167_166 p.R56fs 0.996:0.998 superfamily_PDZ pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors PDZD7 HGNC ENSG00000186862 194 1 0.512821 123 25 16.8919 KCNIP2 0 genome.wustl.edu 37 10 103587076 103587076 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 103587076 103587076 C - DEL KCNIP2 ENST00000355657 human ensembl 74_37 -1 known rna NULL NULL 0.002 - - - no_errors KCNIP2 HGNC ENSG00000120049 260 0 0 152 24 13.6364 NOLC1 0 genome.wustl.edu 37 10 103920580 103920582 + In_Frame_Del DEL AAG AAG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AAG AAG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 103920580 103920582 AAG - DEL NOLC1 ENST00000405356 human ensembl 74_37 +1 known in_frame_del c.1501_1503 p.K503in_frame_del 0.070:0.075:0.056 NULL pfam_SRP40_C,pfscan_LisH_dimerisation - no_errors NOLC1 HGNC ENSG00000166197 64 0 0 36 11 23.4043 WBP1L 0 genome.wustl.edu 37 10 104572835 104572835 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 104572835 104572835 G - DEL WBP1L ENST00000448841 human ensembl 74_37 +1 known frame_shift_del c.839 p.G281fs 1.000 NULL pfam_Uncharacterised_WW-bd - no_errors WBP1L HGNC ENSG00000166272 128 0 0 87 5 5.43478 KIAA1598 0 genome.wustl.edu 37 10 118719757 118719757 + RNA DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 118719757 118719757 A - DEL KIAA1598 ENST00000490615 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors KIAA1598 HGNC ENSG00000187164 33 0 0 16 9 36 OPTN 0 genome.wustl.edu 37 10 13151192 13151192 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 13151192 13151192 C - DEL OPTN ENST00000263036 human ensembl 74_37 +1 known frame_shift_del c.70 p.H26fs 1.000 NULL pfam_NEMO_N - no_errors OPTN HGNC ENSG00000123240 163 0 0 93 29 23.7705 LRRC27 0 genome.wustl.edu 37 10 134188696 134188696 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 134188696 134188696 T - DEL LRRC27 ENST00000368613 human ensembl 74_37 +1 known frame_shift_del c.1543 p.F516fs 0.960 NULL pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC27 HGNC ENSG00000148814 66 0 0 28 12 30 TTC40 0 genome.wustl.edu 37 10 134628225 134628225 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 134628225 134628225 G - DEL TTC40 ENST00000263170 human ensembl 74_37 -1 known frame_shift_del c.1697 p.P566fs 0.001 NULL NULL - no_errors TTC40 HGNC ENSG00000171811 14 0 0 9 3 25 GPR123 0 genome.wustl.edu 37 10 134942202 134942202 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 134942202 134942202 G - DEL GPR123 ENST00000607359 human ensembl 74_37 +1 putative frame_shift_del c.3027 p.Y1010fs 1.000 pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like - no_errors GPR123 HGNC ENSG00000197177 57 0 0 23 7 23.3333 PFKP 0 genome.wustl.edu 37 10 3172106 3172106 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 3172106 3172106 G - DEL PFKP ENST00000381125 human ensembl 74_37 +1 known frame_shift_del c.1779 p.L596fs 1.000 pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk - no_errors PFKP HGNC ENSG00000067057 102 0 0 55 9 14.0625 TFAM 0 genome.wustl.edu 37 10 60148570 60148572 + In_Frame_Del DEL AAA AAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AAA AAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 60148570 60148572 AAA - DEL TFAM ENST00000487519 human ensembl 74_37 +1 known in_frame_del c.432_434 p.K147in_frame_del 0.006:0.936:0.964 superfamily_HMG_box_dom pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom - no_errors TFAM HGNC ENSG00000108064 83 0 0 29 3 9.375 ARID5B 0 genome.wustl.edu 37 10 63852118 63852118 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 63852118 63852118 A - DEL ARID5B ENST00000279873 human ensembl 74_37 +1 known frame_shift_del c.2896 p.K967fs 1.000 NULL pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID5B HGNC ENSG00000150347 117 0 0 71 19 21.1111 HKDC1 0 genome.wustl.edu 37 10 71018587 71018587 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 71018587 71018587 G - DEL HKDC1 ENST00000354624 human ensembl 74_37 +1 known frame_shift_del c.2088 p.G698fs 0.982 pfam_Hexokinase_C pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase - no_errors HKDC1 HGNC ENSG00000156510 121 0 0 99 17 14.6552 DNAJC9 0 genome.wustl.edu 37 10 75005812 75005813 + Frame_Shift_Del DEL CA CA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CA CA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 75005812 75005813 CA - DEL DNAJC9 ENST00000372950 human ensembl 74_37 -1 known frame_shift_del c.444_443 p.V148fs 0.998:1.000 NULL pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain - no_errors DNAJC9 HGNC ENSG00000213551 147 0 0 100 13 11.5044 NRG3 0 genome.wustl.edu 37 10 83635238 83635238 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 83635238 83635238 C - DEL NRG3 ENST00000404547 human ensembl 74_37 +1 known frame_shift_del c.142 p.R50fs 1.000 NULL pfscan_EG-like_dom - no_errors NRG3 HGNC ENSG00000185737 8 0 0 4 3 42.8571 PANK1 0 genome.wustl.edu 37 10 91359120 91359120 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 91359120 91359120 T - DEL PANK1 ENST00000307534 human ensembl 74_37 -1 known frame_shift_del c.1199 p.K400fs 1.000 pfam_Type_II_PanK,tigrfam_Type_II_PanK pfam_Type_II_PanK,tigrfam_Type_II_PanK - no_errors PANK1 HGNC ENSG00000152782 261 1 0.381679 180 49 21.3974 KIF20B 0 genome.wustl.edu 37 10 91514406 91514406 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 91514406 91514406 T - DEL KIF20B ENST00000416354 human ensembl 74_37 +1 known frame_shift_del c.4569 p.F1525fs 0.322 NULL pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF20B HGNC ENSG00000138182 76 0 0 58 14 19.4444 NOC3L 0 genome.wustl.edu 37 10 96117098 96117098 + RNA DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 96117098 96117098 A - DEL NOC3L ENST00000463649 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors NOC3L HGNC ENSG00000173145 29 0 0 8 4 33.3333 TM9SF3 0 genome.wustl.edu 37 10 98292921 98292921 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 10 98292921 98292921 A - DEL TM9SF3 ENST00000371142 human ensembl 74_37 -1 known frame_shift_del c.1212 p.F404fs 1.000 pfam_EMP70 pfam_EMP70 - no_errors TM9SF3 HGNC ENSG00000077147 32 0 0 18 8 30.7692 GRIA4 0 genome.wustl.edu 37 11 105623740 105623740 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 105623740 105623740 T - DEL GRIA4 ENST00000282499 human ensembl 74_37 +1 known frame_shift_del c.281 p.F95fs 1.000 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIA4 HGNC ENSG00000152578 88 0 0 71 21 22.8261 MUC2 0 genome.wustl.edu 37 11 1078269 1078269 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 1078269 1078269 G - DEL MUC2 ENST00000441003 human ensembl 74_37 +1 known frame_shift_del c.556 p.V186fs 0.000 NULL pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C - no_errors MUC2 HGNC ENSG00000198788 78 0 0 45 9 16.6667 CTR9 0 genome.wustl.edu 37 11 10794128 10794130 + In_Frame_Del DEL GAA GAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GAA GAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 10794128 10794130 GAA - DEL CTR9 ENST00000361367 human ensembl 74_37 +1 known in_frame_del c.2506_2508 p.E838in_frame_del 1.000:1.000:0.999 NULL pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors CTR9 HGNC ENSG00000198730 64 0 0 26 9 25.7143 CEP164 0 genome.wustl.edu 37 11 117222648 117222648 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 117222648 117222648 A - DEL CEP164 ENST00000278935 human ensembl 74_37 +1 known frame_shift_del c.337 p.K116fs 1.000 NULL superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom - no_errors CEP164 HGNC ENSG00000110274 16 0 0 5 5 50 BCL9L 0 genome.wustl.edu 37 11 118770651 118770652 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 118770651 118770652 - G INS BCL9L ENST00000334801 human ensembl 74_37 -1 known frame_shift_ins c.3381_3380 p.P1128fs 0.988:0.996 NULL pfam_BCL9_beta-catenin-bd_dom - no_errors BCL9L HGNC ENSG00000186174 74 0 0 35 11 23.913 DPAGT1 0 genome.wustl.edu 37 11 118969142 118969143 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 118969142 118969143 - A INS DPAGT1 ENST00000354202 human ensembl 74_37 -1 known frame_shift_ins c.699_698 p.T234fs 1.000:1.000 pfam_Glycosyl_transferase_4 pfam_Glycosyl_transferase_4 - no_errors DPAGT1 HGNC ENSG00000172269 145 0 0 106 10 8.62069 MFRP 0 genome.wustl.edu 37 11 119213688 119213688 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 119213688 119213688 G - DEL MFRP ENST00000449574 human ensembl 74_37 -1 known frame_shift_del c.1150 p.H384fs 0.000 pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt - no_errors MFRP HGNC ENSG00000235718 26 0 0 11 2 15.3846 MUC5AC 0 genome.wustl.edu 37 11 1217129 1217129 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 1217129 1217129 C - DEL MUC5AC ENST00000358378 human ensembl 74_37 +1 putative rna NULL NULL 0.033 - - - no_errors MUC5AC HGNC ENSG00000215182 104 0 0 69 17 19.7674 DCDC1 0 genome.wustl.edu 37 11 31349818 31349818 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 31349818 31349818 T - DEL DCDC1 ENST00000452803 human ensembl 74_37 -1 known frame_shift_del c.10 p.T4fs 0.005 NULL pfscan_Doublecortin_dom - no_errors DCDC1 HGNC ENSG00000170959 72 0 0 80 22 21.5686 QSER1 0 genome.wustl.edu 37 11 32997895 32997895 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 32997895 32997895 A - DEL QSER1 ENST00000399302 human ensembl 74_37 +1 known frame_shift_del c.5083 p.N1697fs 1.000 NULL NULL - no_errors QSER1 HGNC ENSG00000060749 37 0 0 33 6 15.3846 CSTF3 0 genome.wustl.edu 37 11 33117910 33117910 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 33117910 33117910 T - DEL CSTF3 ENST00000323959 human ensembl 74_37 -1 known frame_shift_del c.1317 p.K439fs 1.000 pfam_Suf,smart_HAT pfam_Suf,smart_HAT - no_errors CSTF3 HGNC ENSG00000176102 112 0 0 77 20 20.6186 ALX4 0 genome.wustl.edu 37 11 44286624 44286624 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 44286624 44286624 G - DEL ALX4 ENST00000329255 human ensembl 74_37 -1 known frame_shift_del c.1016 p.P339fs 0.977 NULL pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom - no_errors ALX4 HGNC ENSG00000052850 51 0 0 21 6 22.2222 LRP4 0 genome.wustl.edu 37 11 46880747 46880748 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 46880747 46880748 - C INS LRP4 ENST00000378623 human ensembl 74_37 -1 known frame_shift_ins c.5505_5504 p.L1836fs 1.000:1.000 NULL pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP4 HGNC ENSG00000134569 106 0 0 73 19 20.6522 OR52A5 0 genome.wustl.edu 37 11 5153679 5153679 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 5153679 5153679 A - DEL OR52A5 ENST00000307388 human ensembl 74_37 -1 known frame_shift_del c.194 p.L65fs 0.870 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR52A5 HGNC ENSG00000171944 69 0 0 66 7 9.58904 OR4P4 0 genome.wustl.edu 37 11 55406141 55406142 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 55406141 55406142 - T INS OR4P4 ENST00000314612 human ensembl 74_37 +1 known frame_shift_ins c.308_309 p.G106fs 0.416:0.097 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4P4 HGNC ENSG00000181927 148 0 0 96 20 17.2414 OR5M3 0 genome.wustl.edu 37 11 56237709 56237709 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 56237709 56237709 T - DEL OR5M3 ENST00000312240 human ensembl 74_37 -1 known frame_shift_del c.265 p.T89fs 0.002 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR5M3 HGNC ENSG00000174937 77 0 0 51 14 21.5385 TNKS1BP1 0 genome.wustl.edu 37 11 57077118 57077119 + Frame_Shift_Del DEL CT CT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CT CT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 57077118 57077119 CT - DEL TNKS1BP1 ENST00000358252 human ensembl 74_37 -1 known frame_shift_del c.3067_3066 p.G1023fs 0.000:0.000 NULL NULL - no_errors TNKS1BP1 HGNC ENSG00000149115 127 0 0 73 4 5.19481 SERPING1 0 genome.wustl.edu 37 11 57365774 57365776 + In_Frame_Del DEL CTG CTG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CTG CTG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 57365774 57365776 CTG - DEL SERPING1 ENST00000278407 human ensembl 74_37 +1 known in_frame_del c.31_33 p.L14in_frame_del 1.000:1.000:1.000 NULL pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom - no_errors SERPING1 HGNC ENSG00000149131 20 0 0 9 3 25 CTNND1 0 genome.wustl.edu 37 11 57578949 57578950 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 57578949 57578950 - A INS CTNND1 ENST00000399050 human ensembl 74_37 +1 known frame_shift_ins c.2629_2630 p.S879fs 1.000:1.000 NULL pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo - no_errors CTNND1 HGNC ENSG00000198561 221 0 0 158 42 21 OR52E8 0 genome.wustl.edu 37 11 5878010 5878011 + Frame_Shift_Ins INS - - CT TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 5878010 5878011 - CT INS OR52E8 ENST00000537935 human ensembl 74_37 -1 known frame_shift_ins c.923_922 p.V308fs 0.018:0.011 NULL pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR52E8 HGNC ENSG00000183269 198 0 0 167 44 20.8531 OR52E8 0 genome.wustl.edu 37 11 5878221 5878222 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 5878221 5878222 - T INS OR52E8 ENST00000537935 human ensembl 74_37 -1 known frame_shift_ins c.712_711 p.A237fs 0.003:0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR52E8 HGNC ENSG00000183269 56 0 0 47 9 16.0714 OSBP 0 genome.wustl.edu 37 11 59369267 59369267 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 59369267 59369267 T - DEL OSBP ENST00000263847 human ensembl 74_37 -1 known frame_shift_del c.867 p.K289fs 0.596 NULL pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors OSBP HGNC ENSG00000110048 77 0 0 63 16 20.2532 CD6 0 genome.wustl.edu 37 11 60777126 60777127 + Frame_Shift_Ins INS - - GT TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 60777126 60777127 - GT INS CD6 ENST00000313421 human ensembl 74_37 +1 known frame_shift_ins c.864_865 p.D290fs 0.293:0.999 pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR - no_errors CD6 HGNC ENSG00000013725 97 0 0 59 17 22.3684 DCHS1 0 genome.wustl.edu 37 11 6662142 6662142 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 6662142 6662142 G - DEL DCHS1 ENST00000299441 human ensembl 74_37 -1 known frame_shift_del c.703 p.R235fs 0.606 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors DCHS1 HGNC ENSG00000166341 205 0 0 135 15 10 SHANK2 0 genome.wustl.edu 37 11 70331662 70331662 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 70331662 70331662 G - DEL SHANK2 ENST00000338508 human ensembl 74_37 -1 known frame_shift_del c.4739 p.P1580fs 0.995 NULL pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain - no_errors SHANK2 HGNC ENSG00000162105 198 0 0 130 48 26.9663 INPPL1 0 genome.wustl.edu 37 11 71948209 71948209 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 71948209 71948209 C - DEL INPPL1 ENST00000298229 human ensembl 74_37 +1 known frame_shift_del c.2921 p.P976fs 0.066 NULL pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2 - no_errors INPPL1 HGNC ENSG00000165458 181 0 0 107 27 20.1493 GAB2 0 genome.wustl.edu 37 11 77937650 77937650 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 77937650 77937650 G - DEL GAB2 ENST00000361507 human ensembl 74_37 -1 known frame_shift_del c.1068 p.K357fs 0.999 NULL pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors GAB2 HGNC ENSG00000033327 199 1 0.5 137 42 23.4637 SLC25A22 0 genome.wustl.edu 37 11 791923 791923 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 791923 791923 G - DEL SLC25A22 ENST00000320230 human ensembl 74_37 -1 known frame_shift_del c.964 p.Q322fs 0.456 NULL pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier - no_errors SLC25A22 HGNC ENSG00000177542 33 0 0 12 6 33.3333 SCARNA9 0 genome.wustl.edu 37 11 93454921 93454921 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 11 93454921 93454921 G - DEL SCARNA9 ENST00000530422 human ensembl 74_37 +1 known rna NULL NULL 0.011 - - - no_errors SCARNA9 HGNC ENSG00000254911 20 0 0 10 4 28.5714 SYCP3 0 genome.wustl.edu 37 12 102122901 102122901 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 102122901 102122901 T - DEL SYCP3 ENST00000266743 human ensembl 74_37 -1 known frame_shift_del c.643 p.I215fs 0.988 NULL pfam_Cor1/Xlr/Xmr - no_errors SYCP3 HGNC ENSG00000139351 38 0 0 7 6 46.1538 SDS 0 genome.wustl.edu 37 12 113835064 113835064 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 113835064 113835064 C - DEL SDS ENST00000257549 human ensembl 74_37 -1 known frame_shift_del c.559 p.D187fs 1.000 pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF - no_errors SDS HGNC ENSG00000135094 73 0 0 50 11 18.0328 MSI1 0 genome.wustl.edu 37 12 120800903 120800903 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 120800903 120800903 C - DEL MSI1 ENST00000257552 human ensembl 74_37 -1 known frame_shift_del c.345 p.L116fs 0.538 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors MSI1 HGNC ENSG00000135097 285 0 0 188 38 16.8142 HNF1A 0 genome.wustl.edu 37 12 121416638 121416639 + Frame_Shift_Del DEL AA AA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AA AA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 121416638 121416639 AA - DEL HNF1A ENST00000257555 human ensembl 74_37 +1 known frame_shift_del c.67_68 p.K23fs 1.000:1.000 pfam_HNF-1_N,superfamily_HNF1_dimer_dom pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom - no_errors HNF1A HGNC ENSG00000135100 54 0 0 23 4 14.8148 CLIP1 0 genome.wustl.edu 37 12 122773037 122773037 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 122773037 122773037 T - DEL CLIP1 ENST00000540338 human ensembl 74_37 -1 known frame_shift_del c.3646 p.R1216fs 1.000 NULL pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain - no_errors CLIP1 HGNC ENSG00000130779 50 0 0 20 7 25.9259 NCOR2 0 genome.wustl.edu 37 12 124846815 124846816 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 124846815 124846816 - G INS NCOR2 ENST00000356219 human ensembl 74_37 -1 known frame_shift_ins c.2954_2953 p.R985fs 0.999:0.990 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors NCOR2 HGNC ENSG00000196498 26 0 0 21 6 22.2222 PLCZ1 0 genome.wustl.edu 37 12 18849130 18849131 + Frame_Shift_Del DEL AG AG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 18849130 18849131 AG - DEL PLCZ1 ENST00000266505 human ensembl 74_37 -1 known frame_shift_del c.1245_1244 p.S415fs 1.000:1.000 pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C - no_errors PLCZ1 HGNC ENSG00000139151 20 0 0 14 4 22.2222 OVCH1 0 genome.wustl.edu 37 12 29624856 29624856 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 29624856 29624856 C - DEL OVCH1 ENST00000318184 human ensembl 74_37 -1 known frame_shift_del c.1735 p.E579fs 0.879 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors OVCH1 HGNC ENSG00000187950 39 0 0 27 8 22.8571 ALG10 0 genome.wustl.edu 37 12 34179403 34179404 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 34179403 34179404 - T INS ALG10 ENST00000266483 human ensembl 74_37 +1 known frame_shift_ins c.975_976 p.V327fs 0.003:0.069 pfam_Alg10,pirsf_Alg10 pfam_Alg10,pirsf_Alg10 - no_errors ALG10 HGNC ENSG00000139133 98 0 0 36 16 30.7692 KIF21A 0 genome.wustl.edu 37 12 39735366 39735368 + In_Frame_Del DEL TCC TCC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 TCC TCC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 39735366 39735368 TCC - DEL KIF21A ENST00000395670 human ensembl 74_37 -1 known in_frame_del c.1862_1860 p.E621in_frame_del 0.995:0.995:0.021 superfamily_ARM-type_fold pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom - no_errors KIF21A HGNC ENSG00000139116 39 0 0 29 4 12.1212 ENSG00000257913 0 genome.wustl.edu 37 12 49412461 49412461 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 49412461 49412461 G - DEL ENSG00000257913 ENST00000547395 human ensembl 74_37 +1 known rna NULL NULL 0.377 - - - no_errors RP11-386G11.5 Clone_based_vega_gene ENSG00000257913 135 1 0.735294 74 19 20.4301 CBX5 0 genome.wustl.edu 37 12 54645832 54645832 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 54645832 54645832 T - DEL CBX5 ENST00000209875 human ensembl 74_37 -1 known frame_shift_del c.317 p.K106fs 1.000 superfamily_Chromodomain-like pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr - no_errors CBX5 HGNC ENSG00000094916 208 2 0.952381 85 70 45.1613 NTF3 0 genome.wustl.edu 37 12 5603709 5603709 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 5603709 5603709 C - DEL NTF3 ENST00000423158 human ensembl 74_37 +1 known frame_shift_del c.368 p.L125fs 1.000 pirsf_Nerve_growth_factor-like pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3 - no_errors NTF3 HGNC ENSG00000185652 111 0 0 64 23 26.4368 STAT2 0 genome.wustl.edu 37 12 56742816 56742817 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 56742816 56742817 - G INS STAT2 ENST00000314128 human ensembl 74_37 -1 known frame_shift_ins c.1468_1467 p.K489fs 0.000:0.000 pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2 - no_errors STAT2 HGNC ENSG00000170581 114 0 0 54 13 19.403 LRP1 0 genome.wustl.edu 37 12 57572241 57572242 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 57572241 57572242 - G INS LRP1 ENST00000243077 human ensembl 74_37 +1 known frame_shift_ins c.4461_4462 p.E1489fs 0.705:1.000 smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP1 HGNC ENSG00000123384 157 0 0 89 17 16.0377 GLI1 0 genome.wustl.edu 37 12 57860075 57860075 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 57860075 57860075 G - DEL GLI1 ENST00000228682 human ensembl 74_37 +1 known frame_shift_del c.815 p.G274fs 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI1 HGNC ENSG00000111087 252 2 0.787402 147 45 23.4375 DPY19L2 0 genome.wustl.edu 37 12 64055262 64055263 + Splice_Site INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 64055262 64055263 - T INS DPY19L2 ENST00000324472 human ensembl 74_37 -1 known splice_site_ins c.451-2_451-1 e4-1 1.000:0.999 - - - no_errors DPY19L2 HGNC ENSG00000177990 61 0 0 28 7 20 E2F7 0 genome.wustl.edu 37 12 77449827 77449827 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 77449827 77449827 T - DEL E2F7 ENST00000322886 human ensembl 74_37 -1 known frame_shift_del c.177 p.K59fs 0.976 NULL pfam_E2F_TDP - no_errors E2F7 HGNC ENSG00000165891 109 1 0.909091 60 22 26.8293 KITLG 0 genome.wustl.edu 37 12 88910256 88910256 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 88910256 88910256 T - DEL KITLG ENST00000228280 human ensembl 74_37 -1 known frame_shift_del c.375 p.K125fs 0.120 pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF - no_errors KITLG HGNC ENSG00000049130 20 0 0 12 4 25 NDUFA12 0 genome.wustl.edu 37 12 95396516 95396516 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 95396516 95396516 A - DEL NDUFA12 ENST00000327772 human ensembl 74_37 -1 known frame_shift_del c.168 p.F56fs 1.000 NULL NULL - no_errors NDUFA12 HGNC ENSG00000184752 72 0 0 60 5 7.69231 USP44 0 genome.wustl.edu 37 12 95927797 95927798 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 12 95927797 95927798 - A INS USP44 ENST00000258499 human ensembl 74_37 -1 known frame_shift_ins c.236_235 p.C79fs 1.000:1.000 pfam_Znf_UBP,pfscan_Znf_UBP pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67 - no_errors USP44 HGNC ENSG00000136014 50 0 0 26 10 27.7778 COL4A1 0 genome.wustl.edu 37 13 110864792 110864792 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 110864792 110864792 G - DEL COL4A1 ENST00000375820 human ensembl 74_37 -1 known frame_shift_del c.359 p.P120fs 0.998 pfam_Collagen pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC - no_errors COL4A1 HGNC ENSG00000187498 340 0 0 212 39 15.5378 RNF17 0 genome.wustl.edu 37 13 25363909 25363912 + Frame_Shift_Del DEL AAGT AAGT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AAGT AAGT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 25363909 25363912 AAGT - DEL RNF17 ENST00000255324 human ensembl 74_37 +1 known frame_shift_del c.934_935 p.K312fs 0.920:0.974 NULL pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING - no_errors RNF17 HGNC ENSG00000132972 158 0 0 102 14 12.069 CENPJ 0 genome.wustl.edu 37 13 25463471 25463471 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 25463471 25463471 T - DEL CENPJ ENST00000381884 human ensembl 74_37 -1 known frame_shift_del c.3284 p.N1095fs 0.285 NULL pfam_Tcp10_C_dom - no_errors CENPJ HGNC ENSG00000151849 157 0 0 69 30 30.303 GSX1 0 genome.wustl.edu 37 13 28367977 28367978 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 28367977 28367978 - A INS GSX1 ENST00000302945 human ensembl 74_37 +1 known frame_shift_ins c.687_688 p.C230fs 1.000:1.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa - no_errors GSX1 HGNC ENSG00000169840 48 0 0 16 3 15.7895 HSPH1 0 genome.wustl.edu 37 13 31715382 31715382 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 31715382 31715382 T - DEL HSPH1 ENST00000445273 human ensembl 74_37 -1 known frame_shift_del c.1737 p.V580fs 1.000 pfam_Hsp_70_fam pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam - no_errors HSPH1 HGNC ENSG00000120694 81 0 0 40 12 23.0769 POSTN 0 genome.wustl.edu 37 13 38171342 38171342 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 38171342 38171342 T - DEL POSTN ENST00000379747 human ensembl 74_37 -1 known frame_shift_del c.197 p.K66fs 1.000 pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain - no_errors POSTN HGNC ENSG00000133110 55 0 0 27 7 20.5882 WBP4 0 genome.wustl.edu 37 13 41645702 41645703 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 41645702 41645703 - A INS WBP4 ENST00000379487 human ensembl 74_37 +1 known frame_shift_ins c.479_480 p.T163fs 0.938:0.941 superfamily_WW_dom,pfscan_WW_dom pfam_WW_dom,pfam_Znf_U1-C,superfamily_WW_dom,smart_Znf_U1,smart_WW_dom,pfscan_WW_dom,pfscan_Znf_C2H2_matrin - no_errors WBP4 HGNC ENSG00000120688 104 0 0 73 11 13.0952 ZC3H13 0 genome.wustl.edu 37 13 46577381 46577381 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 46577381 46577381 T - DEL ZC3H13 ENST00000242848 human ensembl 74_37 -1 known frame_shift_del c.837 p.K279fs 1.000 NULL pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZC3H13 HGNC ENSG00000123200 80 0 0 38 15 28.3019 RNASEH2B 0 genome.wustl.edu 37 13 51519632 51519632 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 51519632 51519632 T - DEL RNASEH2B ENST00000336617 human ensembl 74_37 +1 known frame_shift_del c.580 p.F195fs 0.998 pfam_RNase_H2_suB pfam_RNase_H2_suB - no_errors RNASEH2B HGNC ENSG00000136104 135 0 0 88 18 16.9811 FBXL3 0 genome.wustl.edu 37 13 77581683 77581683 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 13 77581683 77581683 A - DEL FBXL3 ENST00000355619 human ensembl 74_37 -1 known frame_shift_del c.884 p.L295fs 1.000 NULL pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom - no_errors FBXL3 HGNC ENSG00000005812 47 0 0 35 10 22.2222 C14orf79 0 genome.wustl.edu 37 14 105452904 105452906 + In_Frame_Del DEL CTC CTC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CTC CTC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 105452904 105452906 CTC - DEL C14orf79 ENST00000547315 human ensembl 74_37 +1 known in_frame_del c.136_138 p.L47in_frame_del 0.001:0.000:0.000 NULL NULL - no_errors C14orf79 HGNC ENSG00000140104 158 0 0 104 20 16.129 CDH24 0 genome.wustl.edu 37 14 23517513 23517514 + In_Frame_Ins INS - - GGG TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 23517513 23517514 - GGG INS CDH24 ENST00000267383 human ensembl 74_37 -1 known in_frame_ins c.2136_2135 p.713in_frame_insP 0.000:0.000 pfam_Cadherin_cytoplasmic-dom pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH24 HGNC ENSG00000139880 84 0 0 42 10 19.2308 STRN3 0 genome.wustl.edu 37 14 31376175 31376175 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 31376175 31376175 T - DEL STRN3 ENST00000357479 human ensembl 74_37 -1 known frame_shift_del c.1796 p.N599fs 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors STRN3 HGNC ENSG00000196792 106 0 0 93 15 13.8889 ARHGAP5 0 genome.wustl.edu 37 14 32562545 32562545 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 32562545 32562545 T - DEL ARHGAP5 ENST00000345122 human ensembl 74_37 +1 known frame_shift_del c.2670 p.F892fs 0.999 NULL pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase - no_errors ARHGAP5 HGNC ENSG00000100852 56 0 0 23 6 20.6897 CTAGE5 0 genome.wustl.edu 37 14 39819358 39819358 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 39819358 39819358 T - DEL CTAGE5 ENST00000396158 human ensembl 74_37 +1 known frame_shift_del c.2320 p.F775fs 1.000 NULL NULL - no_errors CTAGE5 HGNC ENSG00000150527 169 0 0 119 39 24.6835 DDHD1 0 genome.wustl.edu 37 14 53619422 53619422 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 53619422 53619422 C - DEL DDHD1 ENST00000323669 human ensembl 74_37 -1 known frame_shift_del c.395 p.G132fs 0.957 NULL pfam_DDHD,pfscan_DDHD - no_errors DDHD1 HGNC ENSG00000100523 24 0 0 9 3 25 ZFP36L1 0 genome.wustl.edu 37 14 69256947 69256947 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 69256947 69256947 C - DEL ZFP36L1 ENST00000336440 human ensembl 74_37 -1 known frame_shift_del c.320 p.G107fs 1.000 pfam_Tis11B_N pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZFP36L1 HGNC ENSG00000185650 122 0 0 66 18 21.4286 ADAM21P1 0 genome.wustl.edu 37 14 70713476 70713476 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 70713476 70713476 T - DEL ADAM21P1 ENST00000530196 human ensembl 74_37 -1 known rna NULL NULL 0.003 - - - no_errors ADAM21P1 HGNC ENSG00000235812 157 0 0 82 19 18.8119 ADAM21 0 genome.wustl.edu 37 14 70926261 70926261 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 70926261 70926261 T - DEL ADAM21 ENST00000267499 human ensembl 74_37 +1 known frame_shift_del c.2045 p.L684fs 0.000 NULL pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin - no_errors ADAM21 HGNC ENSG00000139985 35 0 0 24 7 22.5806 YLPM1 0 genome.wustl.edu 37 14 75265533 75265533 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 75265533 75265533 A - DEL YLPM1 ENST00000325680 human ensembl 74_37 +1 known frame_shift_del c.3533 p.M1180fs 1.000 NULL superfamily_P-loop_NTPase - no_errors YLPM1 HGNC ENSG00000119596 76 0 0 54 9 14.2857 SPATA7 0 genome.wustl.edu 37 14 88894005 88894005 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 88894005 88894005 A - DEL SPATA7 ENST00000393545 human ensembl 74_37 +1 known frame_shift_del c.877 p.N294fs 0.001 NULL NULL - no_errors SPATA7 HGNC ENSG00000042317 43 0 0 34 6 15 FOXN3 0 genome.wustl.edu 37 14 89878534 89878534 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 89878534 89878534 G - DEL FOXN3 ENST00000261302 human ensembl 74_37 -1 known frame_shift_del c.287 p.P96fs 0.998 NULL pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXN3 HGNC ENSG00000053254 87 0 0 41 33 44.5946 NRDE2 0 genome.wustl.edu 37 14 90783061 90783061 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 90783061 90783061 T - DEL NRDE2 ENST00000354366 human ensembl 74_37 -1 known frame_shift_del c.268 p.R90fs 0.997 NULL pfam_NRDE-2 - no_errors NRDE2 HGNC ENSG00000119720 81 0 0 39 6 13.3333 UNC79 0 genome.wustl.edu 37 14 94088050 94088050 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 94088050 94088050 A - DEL UNC79 ENST00000553484 human ensembl 74_37 +1 known frame_shift_del c.4537 p.K1515fs 1.000 superfamily_ARM-type_fold superfamily_P-loop_NTPase,superfamily_ARM-type_fold - no_errors UNC79 HGNC ENSG00000133958 57 0 0 35 13 27.0833 CLMN 0 genome.wustl.edu 37 14 95662949 95662949 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 95662949 95662949 T - DEL CLMN ENST00000298912 human ensembl 74_37 -1 known frame_shift_del c.2594 p.K865fs 1.000 NULL pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain - no_errors CLMN HGNC ENSG00000165959 44 0 0 24 4 14.2857 ATG2B 0 genome.wustl.edu 37 14 96788614 96788614 + RNA DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 14 96788614 96788614 A - DEL ATG2B ENST00000488421 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors ATG2B HGNC ENSG00000066739 76 0 0 35 5 12.5 MAGEL2 0 genome.wustl.edu 37 15 23890894 23890894 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 23890894 23890894 G - DEL MAGEL2 ENST00000532292 human ensembl 74_37 -1 known frame_shift_del c.187 p.Q63fs 0.990 NULL pfam_MAGE,pfscan_MAGE - no_errors MAGEL2 HGNC ENSG00000254585 14 0 0 12 3 20 OCA2 0 genome.wustl.edu 37 15 28200305 28200305 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 28200305 28200305 T - DEL OCA2 ENST00000354638 human ensembl 74_37 -1 known frame_shift_del c.1841 p.K614fs 1.000 pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB - no_errors OCA2 HGNC ENSG00000104044 129 0 0 76 28 26.9231 PLCB2 0 genome.wustl.edu 37 15 40584018 40584018 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 40584018 40584018 C - DEL PLCB2 ENST00000558588 human ensembl 74_37 -1 known frame_shift_del c.2634 p.H879fs 0.000 NULL pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C - no_errors PLCB2 HGNC ENSG00000137841 33 0 0 22 5 18.5185 TRPM7 0 genome.wustl.edu 37 15 50925140 50925140 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 50925140 50925140 T - DEL TRPM7 ENST00000313478 human ensembl 74_37 -1 known frame_shift_del c.1057 p.T353fs 1.000 NULL pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase - no_errors TRPM7 HGNC ENSG00000092439 62 0 0 23 8 25.8065 NARG2 0 genome.wustl.edu 37 15 60745782 60745782 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 60745782 60745782 A - DEL NARG2 ENST00000561114 human ensembl 74_37 -1 putative frame_shift_del c.1145 p.F382fs 0.000 NULL NULL - no_errors NARG2 HGNC ENSG00000128915 46 0 0 18 5 21.7391 UACA 0 genome.wustl.edu 37 15 70970500 70970500 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 70970500 70970500 T - DEL UACA ENST00000322954 human ensembl 74_37 -1 known frame_shift_del c.937 p.I313fs 1.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt - no_errors UACA HGNC ENSG00000137831 103 0 0 66 5 7.04225 LARP6 0 genome.wustl.edu 37 15 71125328 71125328 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 71125328 71125328 T - DEL LARP6 ENST00000299213 human ensembl 74_37 -1 known frame_shift_del c.539 p.N180fs 1.000 NULL pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La - no_errors LARP6 HGNC ENSG00000166173 75 0 0 40 12 23.0769 C15orf39 0 genome.wustl.edu 37 15 75500243 75500244 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75500243 75500244 - A INS C15orf39 ENST00000360639 human ensembl 74_37 +1 known frame_shift_ins c.1854_1855 p.I620fs 0.000:0.001 NULL NULL - no_errors C15orf39 HGNC ENSG00000167173 50 0 0 27 7 20.5882 ANP32BP1 0 genome.wustl.edu 37 15 75614862 75614862 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75614862 75614862 C - DEL ANP32BP1 ENST00000564205 human ensembl 74_37 -1 known rna NULL NULL 0.995 - - - no_errors ANP32BP1 HGNC ENSG00000259790 15 0 0 10 3 23.0769 NEIL1 0 genome.wustl.edu 37 15 75641547 75641547 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 75641547 75641547 T - DEL NEIL1 ENST00000355059 human ensembl 74_37 +1 known frame_shift_del c.301 p.Y102fs 1.000 pfam_DNA_glycosylase/AP_lyase_cat,superfamily_DNA_glycosylase/AP_lyase_cat,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat - no_errors NEIL1 HGNC ENSG00000140398 121 0 0 56 16 22.2222 ENSG00000214646 0 genome.wustl.edu 37 15 78234390 78234390 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 78234390 78234390 G - DEL ENSG00000214646 ENST00000568184 human ensembl 74_37 -1 known rna NULL NULL 0.016 - - - no_errors RP11-114H24.4 Clone_based_vega_gene ENSG00000214646 8 0 0 4 2 33.3333 MESDC2 0 genome.wustl.edu 37 15 81271633 81271633 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 81271633 81271633 T - DEL MESDC2 ENST00000261758 human ensembl 74_37 -1 known frame_shift_del c.632 p.K211fs 1.000 pfam_Mesoderm_development_cand-2 pfam_Mesoderm_development_cand-2 - no_errors MESDC2 HGNC ENSG00000117899 61 0 0 23 9 28.125 AGBL1 0 genome.wustl.edu 37 15 86807693 86807693 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 86807693 86807693 A - DEL AGBL1 ENST00000441037 human ensembl 74_37 +1 known frame_shift_del c.1153 p.N387fs 0.000 superfamily_ARM-type_fold pfam_Peptidase_M14,superfamily_ARM-type_fold - no_errors AGBL1 HGNC ENSG00000166748 28 0 0 25 4 13.7931 KIF7 0 genome.wustl.edu 37 15 90190140 90190140 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 90190140 90190140 C - DEL KIF7 ENST00000394412 human ensembl 74_37 -1 known frame_shift_del c.1709 p.G570fs 0.559 NULL pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF7 HGNC ENSG00000166813 89 0 0 61 21 25.6098 SV2B 0 genome.wustl.edu 37 15 91811750 91811750 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 15 91811750 91811750 T - DEL SV2B ENST00000330276 human ensembl 74_37 +1 known frame_shift_del c.1288 p.F431fs 0.958 superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2 pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2 - no_errors SV2B HGNC ENSG00000185518 128 0 0 71 23 24.4681 CLCN7 0 genome.wustl.edu 37 16 1500618 1500620 + In_Frame_Del DEL GAA GAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GAA GAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1500618 1500620 GAA - DEL CLCN7 ENST00000382745 human ensembl 74_37 -1 known in_frame_del c.1497_1495 p.F499in_frame_del 1.000:1.000:1.000 pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7 - no_errors CLCN7 HGNC ENSG00000103249 43 0 0 19 6 24 PTX4 0 genome.wustl.edu 37 16 1536186 1536186 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 1536186 1536186 G - DEL PTX4 ENST00000447419 human ensembl 74_37 -1 known frame_shift_del c.1191 p.G398fs 0.011 pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin - no_errors PTX4 HGNC ENSG00000251692 69 0 0 31 5 13.8889 AQP8 0 genome.wustl.edu 37 16 25232875 25232875 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 25232875 25232875 G - DEL AQP8 ENST00000219660 human ensembl 74_37 +1 known frame_shift_del c.358 p.M122fs 1.000 pfam_MIP,superfamily_Aquaporin-like,prints_MIP pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP - no_errors AQP8 HGNC ENSG00000103375 184 0 0 123 25 16.8919 MAZ 0 genome.wustl.edu 37 16 29821430 29821438 + Splice_Site DEL GCGGCAGCG GCGGCAGCG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GCGGCAGCG GCGGCAGCG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 29821430 29821438 GCGGCAGCG - DEL MAZ ENST00000563402 human ensembl 74_37 +1 novel splice_site_del c.282-1_282-1 e3-1 0.113:0.122:0.038:0.077:0.083:0.008:0.879:0.863:0.228 - - - no_errors MAZ HGNC ENSG00000103495 54 0 0 36 5 12.1951 PRRT2 0 genome.wustl.edu 37 16 29825016 29825016 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 29825016 29825016 C - DEL PRRT2 ENST00000567659 human ensembl 74_37 +1 known frame_shift_del c.641 p.R217fs 1.000 NULL pfam_CD225/Dispanin_fam - no_errors PRRT2 HGNC ENSG00000167371 24 0 0 9 5 35.7143 BCL7C 0 genome.wustl.edu 37 16 30899223 30899223 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 30899223 30899223 G - DEL BCL7C ENST00000215115 human ensembl 74_37 -1 known frame_shift_del c.617 p.P206fs 1.000 NULL pfam_BCL7 - no_errors BCL7C HGNC ENSG00000099385 260 1 0.383142 168 30 15.1515 CREBBP 0 genome.wustl.edu 37 16 3778282 3778282 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 3778282 3778282 G - DEL CREBBP ENST00000262367 human ensembl 74_37 -1 known frame_shift_del c.6766 p.L2256fs 1.000 NULL pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain - no_errors CREBBP HGNC ENSG00000005339 43 0 0 25 11 30.5556 NKD1 0 genome.wustl.edu 37 16 50667134 50667135 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 50667134 50667135 - C INS NKD1 ENST00000268459 human ensembl 74_37 +1 known frame_shift_ins c.855_856 p.R287fs 1.000:1.000 NULL pfscan_EF_hand_dom - no_errors NKD1 HGNC ENSG00000140807 125 0 0 71 19 21.1111 NLRC5 0 genome.wustl.edu 37 16 57113198 57113201 + Frame_Shift_Del DEL AGAT AGAT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AGAT AGAT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 57113198 57113201 AGAT - DEL NLRC5 ENST00000262510 human ensembl 74_37 +1 known frame_shift_del c.5231_5234 p.I1745fs 0.001:0.000:0.014:0.019 smart_Leu-rich_rpt_RNase_inh_sub-typ pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase - no_errors NLRC5 HGNC ENSG00000140853 68 0 0 22 7 24.1379 CTCF 0 genome.wustl.edu 37 16 67655481 67655481 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 67655481 67655481 A - DEL CTCF ENST00000264010 human ensembl 74_37 +1 known frame_shift_del c.1344 p.S450fs 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors CTCF HGNC ENSG00000102974 47 0 0 44 3 6.38298 ZFHX3 0 genome.wustl.edu 37 16 72822585 72822586 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 72822585 72822586 - G INS ZFHX3 ENST00000268489 human ensembl 74_37 -1 known frame_shift_ins c.9590_9589 p.Q3197fs 0.817:0.870 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2 - no_errors ZFHX3 HGNC ENSG00000140836 127 0 0 78 18 18.75 ADAMTS18 0 genome.wustl.edu 37 16 77356311 77356312 + Frame_Shift_Del DEL AA AA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AA AA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 77356311 77356312 AA - DEL ADAMTS18 ENST00000282849 human ensembl 74_37 -1 known frame_shift_del c.2085_2084 p.F695fs 0.998:1.000 NULL pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS18 HGNC ENSG00000140873 102 0 0 66 8 10.8108 NUDT7 0 genome.wustl.edu 37 16 77775744 77775744 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 77775744 77775744 A - DEL NUDT7 ENST00000268533 human ensembl 74_37 +1 known frame_shift_del c.614 p.K207fs 0.000 NULL pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like - no_errors NUDT7 HGNC ENSG00000140876 51 0 0 31 4 11.4286 BANP 0 genome.wustl.edu 37 16 88014616 88014616 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 88014616 88014616 T - DEL BANP ENST00000474563 human ensembl 74_37 +1 putative rna NULL NULL 0.000 - - - no_errors BANP HGNC ENSG00000172530 28 0 0 12 3 20 ANKRD11 0 genome.wustl.edu 37 16 89349640 89349641 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 16 89349640 89349641 - T INS ANKRD11 ENST00000301030 human ensembl 74_37 -1 known frame_shift_ins c.3310_3309 p.D1103fs 1.000:1.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD11 HGNC ENSG00000167522 151 0 0 81 21 20.5882 CRK 0 genome.wustl.edu 37 17 1326755 1326757 + RNA DEL AAA AAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AAA AAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 1326755 1326757 AAA - DEL CRK ENST00000572145 human ensembl 74_37 -1 known rna NULL NULL 0.352:0.023:0.010 - - - no_errors CRK HGNC ENSG00000167193 39 0 0 16 11 40.7407 RAI1 0 genome.wustl.edu 37 17 17699359 17699359 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 17699359 17699359 C - DEL RAI1 ENST00000353383 human ensembl 74_37 +1 known frame_shift_del c.3097 p.Q1035fs 0.989 NULL smart_Znf_PHD - no_errors RAI1 HGNC ENSG00000108557 8 0 0 3 3 50 ALDH3A1 0 genome.wustl.edu 37 17 19641649 19641649 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 19641649 19641649 G - DEL ALDH3A1 ENST00000225740 human ensembl 74_37 -1 known frame_shift_del c.1334 p.P445fs 0.889 superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P) pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P) - no_errors ALDH3A1 HGNC ENSG00000108602 131 0 0 71 12 14.4578 KIAA0100 0 genome.wustl.edu 37 17 26966334 26966334 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 26966334 26966334 T - DEL KIAA0100 ENST00000528896 human ensembl 74_37 -1 known frame_shift_del c.1228 p.R410fs 0.999 pfam_FMP27_N pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom - no_errors KIAA0100 HGNC ENSG00000007202 99 0 0 70 21 23.0769 CRLF3 0 genome.wustl.edu 37 17 29123265 29123265 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 29123265 29123265 A - DEL CRLF3 ENST00000324238 human ensembl 74_37 -1 known frame_shift_del c.516 p.F172fs 0.989 NULL superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors CRLF3 HGNC ENSG00000176390 85 0 0 51 16 23.8806 TMEM132E 0 genome.wustl.edu 37 17 32953916 32953916 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 32953916 32953916 C - DEL TMEM132E ENST00000321639 human ensembl 74_37 +1 known frame_shift_del c.568 p.R192fs 0.996 NULL NULL - no_errors TMEM132E HGNC ENSG00000181291 54 0 0 33 10 23.2558 PIP4K2B 0 genome.wustl.edu 37 17 36955530 36955530 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 36955530 36955530 C - DEL PIP4K2B ENST00000269554 human ensembl 74_37 -1 known frame_shift_del c.148 p.V50fs 1.000 NULL pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub - no_errors PIP4K2B HGNC ENSG00000141720 106 0 0 41 13 24.0741 MED1 0 genome.wustl.edu 37 17 37564657 37564659 + In_Frame_Del DEL AGG AGG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AGG AGG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 37564657 37564659 AGG - DEL MED1 ENST00000300651 human ensembl 74_37 -1 known in_frame_del c.3817_3815 p.S1272in_frame_del 1.000:1.000:1.000 NULL pfam_Mediator_Med1_met/fun - no_errors MED1 HGNC ENSG00000125686 111 0 0 62 13 17.3333 CDC6 0 genome.wustl.edu 37 17 38449856 38449857 + Frame_Shift_Del DEL AT AT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AT AT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 38449856 38449857 AT - DEL CDC6 ENST00000209728 human ensembl 74_37 +1 known frame_shift_del c.809_810 p.M271fs 0.453:0.405 pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18 pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18 - no_errors CDC6 HGNC ENSG00000094804 82 0 0 65 11 14.4737 WNK4 0 genome.wustl.edu 37 17 40932828 40932828 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 40932828 40932828 C - DEL WNK4 ENST00000246914 human ensembl 74_37 +1 known frame_shift_del c.112 p.P39fs 0.584 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors WNK4 HGNC ENSG00000126562 21 0 0 14 2 12.5 BRCA1 0 genome.wustl.edu 37 17 41246532 41246532 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 41246532 41246532 T - DEL BRCA1 ENST00000471181 human ensembl 74_37 -1 known frame_shift_del c.1016 p.K339fs 0.000 pirsf_BRCA1 pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,prints_BRCA1,pfscan_BRCT_dom,pfscan_Znf_RING - no_errors BRCA1 HGNC ENSG00000012048 217 1 0.458716 164 37 18.408 XYLT2 0 genome.wustl.edu 37 17 48433967 48433967 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 48433967 48433967 C - DEL XYLT2 ENST00000017003 human ensembl 74_37 +1 known frame_shift_del c.1578 p.G529fs 1.000 pfam_XylT pfam_XylT,pfam_Glyco_trans_14 - no_errors XYLT2 HGNC ENSG00000015532 110 0 0 80 24 23.0769 ANKRD40 0 genome.wustl.edu 37 17 48777220 48777221 + In_Frame_Ins INS - - TCA TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 48777220 48777221 - TCA INS ANKRD40 ENST00000285243 human ensembl 74_37 -1 known in_frame_ins c.318_317 p.107in_frame_insD 0.002:0.003 superfamily_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD40 HGNC ENSG00000154945 41 0 0 23 4 14.8148 LUC7L3 0 genome.wustl.edu 37 17 48827882 48827882 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 48827882 48827882 A - DEL LUC7L3 ENST00000240304 human ensembl 74_37 +1 known frame_shift_del c.1159 p.S389fs 1.000 NULL pfam_Luc7-rel - no_errors LUC7L3 HGNC ENSG00000108848 120 0 0 60 18 23.0769 WFIKKN2 0 genome.wustl.edu 37 17 48917204 48917204 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 48917204 48917204 C - DEL WFIKKN2 ENST00000311378 human ensembl 74_37 +1 known frame_shift_del c.555 p.P187fs 1.000 NULL pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m - no_errors WFIKKN2 HGNC ENSG00000173714 58 0 0 37 6 13.9535 BZRAP1 0 genome.wustl.edu 37 17 56386700 56386702 + In_Frame_Del DEL CTC CTC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CTC CTC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 56386700 56386702 CTC - DEL BZRAP1 ENST00000355701 human ensembl 74_37 -1 known in_frame_del c.3933_3931 p.E1311in_frame_del 1.000:1.000:1.000 NULL pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain - no_errors BZRAP1 HGNC ENSG00000005379 126 0 0 33 14 29.7872 RNF43 0 genome.wustl.edu 37 17 56435161 56435161 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 56435161 56435161 C - DEL RNF43 ENST00000407977 human ensembl 74_37 -1 known frame_shift_del c.1976 p.G659fs 0.900 NULL pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF43 HGNC ENSG00000108375 187 0 0 64 30 31.9149 TRIM37 0 genome.wustl.edu 37 17 57134362 57134362 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 57134362 57134362 T - DEL TRIM37 ENST00000262294 human ensembl 74_37 -1 known frame_shift_del c.1073 p.N358fs 1.000 pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM37 HGNC ENSG00000108395 70 0 0 42 9 17.6471 STRADA 0 genome.wustl.edu 37 17 61781804 61781804 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 61781804 61781804 G - DEL STRADA ENST00000336174 human ensembl 74_37 -1 known frame_shift_del c.997 p.R333fs 0.626 pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors STRADA HGNC ENSG00000266173 66 0 0 41 23 35.9375 AXIN2 0 genome.wustl.edu 37 17 63532585 63532585 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 63532585 63532585 C - DEL AXIN2 ENST00000307078 human ensembl 74_37 -1 known frame_shift_del c.1994 p.G665fs 0.436 NULL pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom - no_errors AXIN2 HGNC ENSG00000168646 59 0 0 29 14 32.5581 KIAA0753 0 genome.wustl.edu 37 17 6510506 6510506 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 6510506 6510506 T - DEL KIAA0753 ENST00000361413 human ensembl 74_37 -1 known frame_shift_del c.1914 p.K638fs 0.718 NULL NULL - no_errors KIAA0753 HGNC ENSG00000198920 235 0 0 133 31 18.9024 BPTF 0 genome.wustl.edu 37 17 65899951 65899951 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 65899951 65899951 A - DEL BPTF ENST00000321892 human ensembl 74_37 +1 known frame_shift_del c.2968 p.E993fs 0.993 NULL pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain - no_errors BPTF HGNC ENSG00000171634 33 0 0 7 7 50 SLC16A6 0 genome.wustl.edu 37 17 66270149 66270150 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 66270149 66270150 - C INS SLC16A6 ENST00000327268 human ensembl 74_37 -1 known frame_shift_ins c.295_294 p.L98fs 0.030:0.006 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC16A6 HGNC ENSG00000108932 61 0 0 35 12 25.5319 ABCA10 0 genome.wustl.edu 37 17 67218780 67218780 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 67218780 67218780 T - DEL ABCA10 ENST00000269081 human ensembl 74_37 -1 known frame_shift_del c.93 p.K31fs 0.000 NULL pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCA10 HGNC ENSG00000154263 101 0 0 60 6 9.09091 GRB2 0 genome.wustl.edu 37 17 73389745 73389745 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 73389745 73389745 G - DEL GRB2 ENST00000583912 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors GRB2 HGNC ENSG00000177885 70 0 0 47 8 14.5455 ZBTB4 0 genome.wustl.edu 37 17 7366339 7366340 + In_Frame_Ins INS - - TCC TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7366339 7366340 - TCC INS ZBTB4 ENST00000311403 human ensembl 74_37 -1 known in_frame_ins c.1962_1961 p.655in_frame_insE 0.006:0.585 NULL pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB4 HGNC ENSG00000174282 53 0 0 25 9 26.4706 TRIM47 0 genome.wustl.edu 37 17 73870678 73870679 + Frame_Shift_Del DEL AA AA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AA AA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 73870678 73870679 AA - DEL TRIM47 ENST00000254816 human ensembl 74_37 -1 known frame_shift_del c.1803_1802 p.F601fs 0.077:0.954 pfscan_B30.2/SPRY pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM47 HGNC ENSG00000132481 124 0 0 54 23 29.8701 SRSF2 0 genome.wustl.edu 37 17 74732956 74732956 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 74732956 74732956 G - DEL SRSF2 ENST00000359995 human ensembl 74_37 -1 known frame_shift_del c.287 p.P96fs 0.326 NULL pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom - no_errors SRSF2 HGNC ENSG00000161547 55 0 0 39 10 20.4082 EFNB3 0 genome.wustl.edu 37 17 7612855 7612856 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7612855 7612856 - C INS EFNB3 ENST00000226091 human ensembl 74_37 +1 known frame_shift_ins c.984_985 p.Q330fs 1.000:1.000 NULL pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin - no_errors EFNB3 HGNC ENSG00000108947 127 0 0 53 14 20.8955 CHD3 0 genome.wustl.edu 37 17 7798765 7798765 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 7798765 7798765 C - DEL CHD3 ENST00000330494 human ensembl 74_37 +1 known frame_shift_del c.1612 p.R540fs 0.007 superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD3 HGNC ENSG00000170004 156 0 0 117 7 5.64516 BAHCC1 0 genome.wustl.edu 37 17 79411725 79411726 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 79411725 79411726 - C INS BAHCC1 ENST00000307745 human ensembl 74_37 +1 known frame_shift_ins c.2544_2545 p.G850fs 1.000:1.000 NULL pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom - no_errors RP11-1055B8.7 Clone_based_vega_gene ENSG00000171282 156 0 0 115 9 7.25806 CCDC57 0 genome.wustl.edu 37 17 80059474 80059474 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 80059474 80059474 C - DEL CCDC57 ENST00000584717 human ensembl 74_37 -1 putative rna NULL NULL 0.003 - - - no_errors CCDC57 HGNC ENSG00000176155 40 0 0 25 7 21.875 RCVRN 0 genome.wustl.edu 37 17 9801335 9801336 + RNA INS - - TG TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 17 9801335 9801336 - TG INS RCVRN ENST00000570909 human ensembl 74_37 -1 putative rna NULL NULL 0.000:0.000 - - - no_errors RCVRN HGNC ENSG00000109047 43 0 0 15 5 25 HAUS1 0 genome.wustl.edu 37 18 43685174 43685174 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 43685174 43685174 A - DEL HAUS1 ENST00000282058 human ensembl 74_37 +1 known frame_shift_del c.45 p.I18fs 1.000 NULL NULL - no_errors HAUS1 HGNC ENSG00000152240 51 0 0 23 4 14.8148 SMAD7 0 genome.wustl.edu 37 18 46474794 46474795 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 46474794 46474795 - G INS SMAD7 ENST00000262158 human ensembl 74_37 -1 known frame_shift_ins c.627_626 p.P210fs 1.000:1.000 superfamily_SMAD_FHA_domain pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type - no_errors SMAD7 HGNC ENSG00000101665 57 0 0 52 8 13.3333 WDR7 0 genome.wustl.edu 37 18 54358513 54358513 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 54358513 54358513 G - DEL WDR7 ENST00000254442 human ensembl 74_37 +1 known frame_shift_del c.784 p.D264fs 1.000 superfamily_Quinonprotein_ADH-like_supfam pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR7 HGNC ENSG00000091157 136 0 0 74 22 22.9167 SERPINB2 0 genome.wustl.edu 37 18 61569682 61569682 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 61569682 61569682 A - DEL SERPINB2 ENST00000299502 human ensembl 74_37 +1 known frame_shift_del c.723 p.N242fs 0.843 pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom - no_errors SERPINB2 HGNC ENSG00000197632 73 0 0 34 6 15 DSEL 0 genome.wustl.edu 37 18 65178798 65178798 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 65178798 65178798 A - DEL DSEL ENST00000310045 human ensembl 74_37 -1 known frame_shift_del c.3078 p.Q1027fs 1.000 pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas - no_errors DSEL HGNC ENSG00000171451 88 0 0 71 16 18.3908 MBP 0 genome.wustl.edu 37 18 74778306 74778307 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 74778306 74778307 - T INS MBP ENST00000355994 human ensembl 74_37 -1 known frame_shift_ins c.87_86 p.R30fs 0.000:0.000 NULL pfam_Myelin_BP,prints_Myelin_BP - no_errors MBP HGNC ENSG00000197971 59 0 0 31 5 13.8889 ANKRD12 0 genome.wustl.edu 37 18 9255247 9255247 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 18 9255247 9255247 A - DEL ANKRD12 ENST00000262126 human ensembl 74_37 +1 known frame_shift_del c.1982 p.E663fs 1.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors ANKRD12 HGNC ENSG00000101745 42 0 0 21 7 25 ZNF433 0 genome.wustl.edu 37 19 12126523 12126523 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 12126523 12126523 T - DEL ZNF433 ENST00000344980 human ensembl 74_37 -1 known frame_shift_del c.1159 p.T387fs 0.778 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF433 HGNC ENSG00000197647 54 0 0 34 10 22.7273 C19orf57 0 genome.wustl.edu 37 19 13993679 13993680 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 13993679 13993680 - G INS C19orf57 ENST00000454313 human ensembl 74_37 -1 known frame_shift_ins c.1943_1942 p.L648fs 0.000:0.000 NULL NULL - no_errors C19orf57 HGNC ENSG00000132016 114 0 0 47 15 24.1935 C19orf44 0 genome.wustl.edu 37 19 16628088 16628090 + In_Frame_Del DEL GGA GGA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GGA GGA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 16628088 16628090 GGA - DEL C19orf44 ENST00000221671 human ensembl 74_37 +1 known in_frame_del c.1950_1952 p.E652in_frame_del 0.973:0.988:0.994 NULL NULL - no_errors C19orf44 HGNC ENSG00000105072 68 0 0 34 9 20.9302 FCHO1 0 genome.wustl.edu 37 19 17887479 17887480 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 17887479 17887480 - C INS FCHO1 ENST00000252771 human ensembl 74_37 +1 known frame_shift_ins c.1243_1244 p.R417fs 0.969:0.997 NULL pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,superfamily_Clathrin_mu_C,smart_FCH_dom,pfscan_FCH_dom - no_errors FCHO1 HGNC ENSG00000130475 82 0 0 51 14 21.5385 ENSG00000266156 0 genome.wustl.edu 37 19 20988370 20988370 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 20988370 20988370 T - DEL ENSG00000266156 ENST00000582722 human ensembl 74_37 +1 novel rna NULL NULL 0.001 - - - no_errors AC010329.1 Clone_based_ensembl_gene ENSG00000266156 12 0 0 11 2 15.3846 ZNF66 0 genome.wustl.edu 37 19 20988745 20988745 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 20988745 20988745 A - DEL ZNF66 ENST00000344519 human ensembl 74_37 +1 known frame_shift_del c.339 p.G116fs 0.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF66 HGNC ENSG00000160229 43 0 0 15 16 51.6129 ZNF724P 0 genome.wustl.edu 37 19 23406702 23406702 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 23406702 23406702 T - DEL ZNF724P ENST00000418100 human ensembl 74_37 -1 novel frame_shift_del c.345 p.G116fs 0.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF724P HGNC ENSG00000196081 12 0 0 10 5 33.3333 SBSN 0 genome.wustl.edu 37 19 36019046 36019047 + Frame_Shift_Del DEL CT CT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CT CT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 36019046 36019047 CT - DEL SBSN ENST00000518157 human ensembl 74_37 -1 known frame_shift_del c.138_137 p.E46fs 1.000:1.000 NULL NULL - no_errors SBSN HGNC ENSG00000189001 218 1 0.456621 188 33 14.9321 SIPA1L3 0 genome.wustl.edu 37 19 38655514 38655514 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 38655514 38655514 G - DEL SIPA1L3 ENST00000222345 human ensembl 74_37 +1 known frame_shift_del c.4176 p.G1394fs 0.002 NULL pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom - no_errors SIPA1L3 HGNC ENSG00000105738 77 0 0 35 5 12.5 LTBP4 0 genome.wustl.edu 37 19 41115674 41115675 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 41115674 41115675 - C INS LTBP4 ENST00000308370 human ensembl 74_37 +1 known frame_shift_ins c.1782_1783 p.P596fs 0.000:0.996 pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom - no_errors LTBP4 HGNC ENSG00000090006 77 0 0 39 7 15.2174 ENSG00000269318 0 genome.wustl.edu 37 19 4357489 4357489 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 4357489 4357489 C - DEL ENSG00000269318 ENST00000593524 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors AC007292.3 Clone_based_vega_gene ENSG00000269318 30 0 0 19 6 24 RTN2 0 genome.wustl.edu 37 19 45996513 45996513 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 45996513 45996513 G - DEL RTN2 ENST00000245923 human ensembl 74_37 -1 known frame_shift_del c.938 p.P313fs 0.005 NULL pfam_Reticulon,pfscan_Reticulon - no_errors RTN2 HGNC ENSG00000125744 182 0 0 104 35 25.1799 DMPK 0 genome.wustl.edu 37 19 46280835 46280836 + Frame_Shift_Del DEL AG AG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 46280835 46280836 AG - DEL DMPK ENST00000343373 human ensembl 74_37 -1 known frame_shift_del c.926_925 p.L309fs 1.000:1.000 pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom - no_errors DMPK HGNC ENSG00000104936 83 0 0 41 7 14.5833 ZNF114 0 genome.wustl.edu 37 19 48789818 48789818 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 48789818 48789818 T - DEL ZNF114 ENST00000315849 human ensembl 74_37 +1 known frame_shift_del c.937 p.Y315fs 0.070 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF114 HGNC ENSG00000178150 74 0 0 32 6 15.7895 LMTK3 0 genome.wustl.edu 37 19 49000732 49000732 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 49000732 49000732 G - DEL LMTK3 ENST00000270238 human ensembl 74_37 -1 known frame_shift_del c.3681 p.K1228fs 0.998 smart_Ser/Thr_dual-sp_kinase_dom pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors LMTK3 HGNC ENSG00000142235 103 1 0.961538 53 9 14.5161 TEAD2 0 genome.wustl.edu 37 19 49850473 49850473 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 49850473 49850473 G - DEL TEAD2 ENST00000311227 human ensembl 74_37 -1 known frame_shift_del c.883 p.H295fs 0.961 pfam_TEA/ATTS,pirsf_TEF pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS - no_errors TEAD2 HGNC ENSG00000074219 330 1 0.302115 217 46 17.4905 ALDH16A1 0 genome.wustl.edu 37 19 49969002 49969002 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 49969002 49969002 C - DEL ALDH16A1 ENST00000293350 human ensembl 74_37 +1 known frame_shift_del c.1576 p.Y528fs 0.444 superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH - no_errors ALDH16A1 HGNC ENSG00000161618 179 0 0 97 22 18.4874 ZNF616 0 genome.wustl.edu 37 19 52619867 52619867 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 52619867 52619867 T - DEL ZNF616 ENST00000600228 human ensembl 74_37 -1 known frame_shift_del c.550 p.T184fs 0.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF616 HGNC ENSG00000204611 100 0 0 54 12 18.1818 LOC101928780 0 genome.wustl.edu 37 19 54627847 54627848 + RNA INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 54627847 54627848 - C INS LOC101928780 ENST00000452097 human ensembl 74_37 -1 known rna NULL NULL 0.000:0.000 - - - no_errors AC012314.8 Clone_based_vega_gene ENSG00000237017 264 0 0 151 18 10.6509 PPP1R12C 0 genome.wustl.edu 37 19 55607462 55607462 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 55607462 55607462 C - DEL PPP1R12C ENST00000263433 human ensembl 74_37 -1 known frame_shift_del c.1110 p.I373fs 0.002 pirsf_Pase-1_reg_su_12A/B/C_euk pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors PPP1R12C HGNC ENSG00000125503 80 0 0 32 4 11.1111 SAFB2 0 genome.wustl.edu 37 19 5590343 5590343 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5590343 5590343 C - DEL SAFB2 ENST00000252542 human ensembl 74_37 -1 known frame_shift_del c.2471 p.G824fs 0.985 NULL pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom - no_errors SAFB2 HGNC ENSG00000130254 23 0 0 5 4 44.4444 C19orf70 0 genome.wustl.edu 37 19 5679653 5679654 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5679653 5679654 - G INS C19orf70 ENST00000309324 human ensembl 74_37 -1 known frame_shift_ins c.151_150 p.A50fs 0.975:0.000 NULL NULL - no_errors C19orf70 HGNC ENSG00000174917 144 0 0 86 16 15.6863 RANBP3 0 genome.wustl.edu 37 19 5951588 5951588 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 5951588 5951588 T - DEL RANBP3 ENST00000340578 human ensembl 74_37 -1 known frame_shift_del c.98 p.N33fs 1.000 NULL pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom - no_errors RANBP3 HGNC ENSG00000031823 29 0 0 23 6 20.6897 XAB2 0 genome.wustl.edu 37 19 7684652 7684657 + In_Frame_Del DEL CTCGTC CTCGTC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CTCGTC CTCGTC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 7684652 7684657 CTCGTC - DEL XAB2 ENST00000358368 human ensembl 74_37 -1 known in_frame_del c.2487_2482 p.DE828in_frame_del 0.994:1.000:0.999:0.821:0.993:1.000 NULL smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors XAB2 HGNC ENSG00000076924 443 0 0 286 31 9.77918 FBN3 0 genome.wustl.edu 37 19 8193948 8193949 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 8193948 8193949 - G INS FBN3 ENST00000270509 human ensembl 74_37 -1 known frame_shift_ins c.2260_2259 p.G753fs 1.000:0.646 pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom - no_errors FBN3 HGNC ENSG00000142449 113 0 0 74 11 12.9412 HNRNPM 0 genome.wustl.edu 37 19 8528508 8528508 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 19 8528508 8528508 A - DEL HNRNPM ENST00000325495 human ensembl 74_37 +1 known frame_shift_del c.376 p.A128fs 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom - no_errors HNRNPM HGNC ENSG00000099783 40 0 0 33 5 13.1579 AFF3 0 genome.wustl.edu 37 2 100217913 100217914 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 100217913 100217914 - G INS AFF3 ENST00000356421 human ensembl 74_37 -1 known frame_shift_ins c.1430_1429 p.H477fs 1.000:0.997 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF3 HGNC ENSG00000144218 26 0 0 23 4 14.8148 MAP4K4 0 genome.wustl.edu 37 2 102452431 102452432 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 102452431 102452432 - A INS MAP4K4 ENST00000324219 human ensembl 74_37 +1 known frame_shift_ins c.764_765 p.W258fs 1.000:0.996 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom - no_errors MAP4K4 HGNC ENSG00000071054 23 0 0 28 7 20 ACVR2A 0 genome.wustl.edu 37 2 148657041 148657041 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 148657041 148657041 A - DEL ACVR2A ENST00000241416 human ensembl 74_37 +1 known frame_shift_del c.278 p.D96fs 1.000 pfam_Activin_rcpt,prints_TGFB_receptor pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor - no_errors ACVR2A HGNC ENSG00000121989 100 1 0.990099 51 26 33.7662 ACVR2A 0 genome.wustl.edu 37 2 148683686 148683686 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 148683686 148683686 A - DEL ACVR2A ENST00000241416 human ensembl 74_37 +1 known frame_shift_del c.1303 p.K437fs 1.000 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor - no_errors ACVR2A HGNC ENSG00000121989 105 1 0.943396 48 35 42.1687 RIF1 0 genome.wustl.edu 37 2 152316583 152316583 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 152316583 152316583 T - DEL RIF1 ENST00000243326 human ensembl 74_37 +1 known frame_shift_del c.3025 p.L1010fs 0.976 NULL pfam_Rif1_N,superfamily_ARM-type_fold - no_errors RIF1 HGNC ENSG00000080345 26 0 0 16 2 11.1111 ACVR1C 0 genome.wustl.edu 37 2 158406868 158406879 + In_Frame_Del DEL GTCCTTGCAATT GTCCTTGCAATT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GTCCTTGCAATT GTCCTTGCAATT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 158406868 158406879 GTCCTTGCAATT - DEL ACVR1C ENST00000243349 human ensembl 74_37 -1 known in_frame_del c.581_570 p.ARTI192in_frame_del 1.000:1.000:1.000:1.000:0.984:0.676:1.000:1.000:0.996:1.000:1.000:0.995 pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors ACVR1C HGNC ENSG00000123612 104 0 0 91 5 5.20833 KCNH7 0 genome.wustl.edu 37 2 163693269 163693270 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 163693269 163693270 - T INS KCNH7 ENST00000332142 human ensembl 74_37 -1 known frame_shift_ins c.85_84 p.F28fs 1.000:1.000 superfamily_PAS pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS - no_errors KCNH7 HGNC ENSG00000184611 30 0 0 12 7 36.8421 SCN3A 0 genome.wustl.edu 37 2 166010981 166010981 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 166010981 166010981 T - DEL SCN3A ENST00000283254 human ensembl 74_37 -1 known frame_shift_del c.1361 p.K454fs 1.000 NULL pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2 - no_errors SCN3A HGNC ENSG00000153253 100 0 0 53 18 25.3521 LRP2 0 genome.wustl.edu 37 2 169997024 169997025 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 169997024 169997025 - G INS LRP2 ENST00000263816 human ensembl 74_37 -1 known frame_shift_ins c.13140_13139 p.C4381fs 1.000:1.000 superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt - no_errors LRP2 HGNC ENSG00000081479 101 1 0.980392 55 14 20.2899 SSB 0 genome.wustl.edu 37 2 170665008 170665008 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 170665008 170665008 A - DEL SSB ENST00000260956 human ensembl 74_37 +1 known frame_shift_del c.571 p.N193fs 1.000 NULL pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La - no_errors SSB HGNC ENSG00000138385 71 0 0 21 11 34.375 CYBRD1 0 genome.wustl.edu 37 2 172410001 172410001 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 172410001 172410001 T - DEL CYBRD1 ENST00000321348 human ensembl 74_37 +1 known frame_shift_del c.548 p.S185fs 0.877 pfscan_Cyt_b561/ferric_Rdtase_TM pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM - no_errors CYBRD1 HGNC ENSG00000071967 44 0 0 29 9 23.6842 RBM45 0 genome.wustl.edu 37 2 178988919 178988920 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 178988919 178988920 - A INS RBM45 ENST00000286070 human ensembl 74_37 +1 known frame_shift_ins c.1134_1135 p.A381fs 1.000:1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBM45 HGNC ENSG00000155636 78 0 0 30 7 18.9189 COL3A1 0 genome.wustl.edu 37 2 189851835 189851837 + In_Frame_Del DEL AGG AGG - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AGG AGG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 189851835 189851837 AGG - DEL COL3A1 ENST00000304636 human ensembl 74_37 +1 known in_frame_del c.498_500 p.G168in_frame_del 0.003:0.039:0.030 NULL pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C - no_errors COL3A1 HGNC ENSG00000168542 106 0 0 82 15 15.4639 DNAH7 0 genome.wustl.edu 37 2 196801373 196801374 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 196801373 196801374 - A INS DNAH7 ENST00000312428 human ensembl 74_37 -1 known frame_shift_ins c.3222_3221 p.L1074fs 1.000:1.000 pfam_Dynein_heavy_dom-2 pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom - no_errors DNAH7 HGNC ENSG00000118997 56 0 0 32 6 15.7895 TRAK2 0 genome.wustl.edu 37 2 202245721 202245721 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202245721 202245721 G - DEL TRAK2 ENST00000332624 human ensembl 74_37 -1 known frame_shift_del c.2290 p.L764fs 0.033 pfam_Traffickng_kinesin-bd_prot_dom pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom - no_errors TRAK2 HGNC ENSG00000115993 238 0 0 154 18 10.4651 ALS2CR11 0 genome.wustl.edu 37 2 202352566 202352566 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 202352566 202352566 T - DEL ALS2CR11 ENST00000286195 human ensembl 74_37 -1 known frame_shift_del c.1641 p.V548fs 0.040 NULL superfamily_C2_dom - no_errors ALS2CR11 HGNC ENSG00000155754 159 0 0 74 29 28.1553 BMPR2 0 genome.wustl.edu 37 2 203420130 203420130 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 203420130 203420130 A - DEL BMPR2 ENST00000374580 human ensembl 74_37 +1 known frame_shift_del c.1742 p.N583fs 1.000 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors BMPR2 HGNC ENSG00000204217 106 0 0 58 9 13.4328 ABI2 0 genome.wustl.edu 37 2 204193276 204193276 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 204193276 204193276 G - DEL ABI2 ENST00000295851 human ensembl 74_37 +1 known frame_shift_del c.39 p.G15fs 1.000 NULL pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox - no_errors ABI2 HGNC ENSG00000138443 57 0 0 23 5 17.8571 CNPPD1 0 genome.wustl.edu 37 2 220037561 220037561 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220037561 220037561 G - DEL CNPPD1 ENST00000360507 human ensembl 74_37 -1 known frame_shift_del c.980 p.P327fs 0.896 NULL pfam_Cyclin_PHO80-like,superfamily_Cyclin-like - no_errors CNPPD1 HGNC ENSG00000115649 53 0 0 39 6 13.3333 SPEG 0 genome.wustl.edu 37 2 220330808 220330808 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220330808 220330808 C - DEL SPEG ENST00000462545 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors SPEG HGNC ENSG00000072195 30 0 0 22 2 8.33333 SLC4A3 0 genome.wustl.edu 37 2 220504282 220504282 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 220504282 220504282 G - DEL SLC4A3 ENST00000273063 human ensembl 74_37 +1 known frame_shift_del c.3183 p.L1064fs 1.000 pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk - no_errors SLC4A3 HGNC ENSG00000114923 146 0 0 70 18 20.4545 IRS1 0 genome.wustl.edu 37 2 227661663 227661664 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 227661663 227661664 - C INS IRS1 ENST00000305123 human ensembl 74_37 -1 known frame_shift_ins c.1792_1791 p.H597fs 1.000:0.995 NULL pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1 - no_errors IRS1 HGNC ENSG00000169047 67 0 0 45 3 6.25 RHBDD1 0 genome.wustl.edu 37 2 227729594 227729594 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 227729594 227729594 A - DEL RHBDD1 ENST00000341329 human ensembl 74_37 +1 known frame_shift_del c.185 p.D64fs 0.007 pfam_Peptidase_S54_rhomboid_dom pfam_Peptidase_S54_rhomboid_dom - no_errors RHBDD1 HGNC ENSG00000144468 69 0 0 72 13 15.2941 LINC00471 0 genome.wustl.edu 37 2 232373778 232373778 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 232373778 232373778 C - DEL LINC00471 ENST00000313064 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors LINC00471 HGNC ENSG00000181798 155 0 0 103 19 15.5738 AGAP1 0 genome.wustl.edu 37 2 236649677 236649677 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 236649677 236649677 C - DEL AGAP1 ENST00000304032 human ensembl 74_37 +1 known frame_shift_del c.381 p.P129fs 0.952 pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase - no_errors AGAP1 HGNC ENSG00000157985 77 0 0 38 7 15.5556 CXXC11 0 genome.wustl.edu 37 2 242814375 242814375 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 242814375 242814375 C - DEL CXXC11 ENST00000343216 human ensembl 74_37 +1 known frame_shift_del c.668 p.P225fs 0.000 NULL NULL - no_errors CXXC11 HGNC ENSG00000188011 36 0 0 25 4 13.7931 ENSG00000268412 0 genome.wustl.edu 37 2 26251415 26251415 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 26251415 26251415 G - DEL ENSG00000268412 ENST00000599234 human ensembl 74_37 -1 novel frame_shift_del c.67 p.L23fs 0.967 pfam_UPF0434/Trm112 pfam_UPF0434/Trm112 - no_errors AC013449.1 Clone_based_ensembl_gene ENSG00000268412 37 0 0 16 5 23.8095 MAPRE3 0 genome.wustl.edu 37 2 27248517 27248517 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27248517 27248517 C - DEL MAPRE3 ENST00000233121 human ensembl 74_37 +1 known frame_shift_del c.536 p.C182fs 1.000 NULL pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain - no_errors MAPRE3 HGNC ENSG00000084764 127 0 0 48 36 42.8571 FNDC4 0 genome.wustl.edu 37 2 27717517 27717517 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 27717517 27717517 G - DEL FNDC4 ENST00000264703 human ensembl 74_37 -1 known frame_shift_del c.30 p.S11fs 0.915 NULL pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors FNDC4 HGNC ENSG00000115226 29 0 0 11 3 21.4286 CEBPZ 0 genome.wustl.edu 37 2 37454908 37454908 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 37454908 37454908 T - DEL CEBPZ ENST00000234170 human ensembl 74_37 -1 known frame_shift_del c.1428 p.D477fs 1.000 superfamily_ARM-type_fold pfam_CCAAT-binding_factor,superfamily_ARM-type_fold - no_errors CEBPZ HGNC ENSG00000115816 30 0 0 16 5 23.8095 OXER1 0 genome.wustl.edu 37 2 42991089 42991089 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 42991089 42991089 C - DEL OXER1 ENST00000378661 human ensembl 74_37 -1 known frame_shift_del c.231 p.S78fs 0.001 NULL pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors OXER1 HGNC ENSG00000162881 36 0 0 24 4 14.2857 PPM1B 0 genome.wustl.edu 37 2 44459529 44459529 + RNA DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 44459529 44459529 A - DEL PPM1B ENST00000459690 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors PPM1B HGNC ENSG00000138032 65 0 0 46 10 17.8571 UGP2 0 genome.wustl.edu 37 2 64069278 64069280 + RNA DEL AAA AAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AAA AAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 64069278 64069280 AAA - DEL UGP2 ENST00000484056 human ensembl 74_37 +1 known rna NULL NULL 0.271:0.359:0.509 - - - no_errors UGP2 HGNC ENSG00000169764 61 0 0 31 19 38 REG1A 0 genome.wustl.edu 37 2 79349995 79349995 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 79349995 79349995 C - DEL REG1A ENST00000233735 human ensembl 74_37 +1 known frame_shift_del c.350 p.L118fs 0.003 pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII - no_errors REG1A HGNC ENSG00000115386 217 0 0 164 29 15.0259 RPIA 0 genome.wustl.edu 37 2 89036154 89036155 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 89036154 89036155 - G INS RPIA ENST00000283646 human ensembl 74_37 +1 known frame_shift_ins c.699_700 p.V235fs 1.000:1.000 pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA pfam_Ribose5P_isomerase_typA,tigrfam_Ribose5P_isomerase_typA - no_errors RPIA HGNC ENSG00000153574 249 0 0 155 36 18.8482 ZNF2 0 genome.wustl.edu 37 2 95847120 95847120 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 2 95847120 95847120 T - DEL ZNF2 ENST00000340539 human ensembl 74_37 +1 known frame_shift_del c.547 p.F184fs 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF2 HGNC ENSG00000163067 178 0 0 97 21 17.7966 KIF16B 0 genome.wustl.edu 37 20 16348120 16348120 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 16348120 16348120 A - DEL KIF16B ENST00000408042 human ensembl 74_37 -1 known frame_shift_del c.3850 p.Y1284fs 0.000 NULL pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom - no_errors KIF16B HGNC ENSG00000089177 127 0 0 92 20 17.8571 DNMT3B 0 genome.wustl.edu 37 20 31375160 31375160 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 31375160 31375160 C - DEL DNMT3B ENST00000328111 human ensembl 74_37 +1 known frame_shift_del c.557 p.Y188fs 0.997 NULL pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom - no_errors DNMT3B HGNC ENSG00000088305 107 0 0 85 17 16.6667 CBFA2T2 0 genome.wustl.edu 37 20 32224505 32224505 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 32224505 32224505 A - DEL CBFA2T2 ENST00000346541 human ensembl 74_37 +1 known frame_shift_del c.1315 p.T441fs 1.000 NULL pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1 - no_errors CBFA2T2 HGNC ENSG00000078699 115 0 0 77 7 8.33333 PCIF1 0 genome.wustl.edu 37 20 44569252 44569253 + Splice_Site DEL GT GT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GT GT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 44569252 44569253 GT - DEL PCIF1 ENST00000372409 human ensembl 74_37 +1 known splice_site_del c.387+1_387+1 e3+1 1.000:1.000 - - - no_errors PCIF1 HGNC ENSG00000100982 20 0 0 13 2 13.3333 SLC13A3 0 genome.wustl.edu 37 20 45192098 45192098 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 45192098 45192098 G - DEL SLC13A3 ENST00000279027 human ensembl 74_37 -1 known frame_shift_del c.1587 p.N530fs 1.000 pfam_Na/sul_symport,pfam_Cit_transptr-like_dom pfam_Na/sul_symport,pfam_Cit_transptr-like_dom - no_errors SLC13A3 HGNC ENSG00000158296 87 0 0 34 13 27.6596 DDX27 0 genome.wustl.edu 37 20 47858504 47858504 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 47858504 47858504 A - DEL DDX27 ENST00000371764 human ensembl 74_37 +1 known frame_shift_del c.2065 p.K691fs 1.000 NULL pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX27 HGNC ENSG00000124228 103 1 0.961538 47 26 35.6164 ADNP 0 genome.wustl.edu 37 20 49508146 49508146 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 49508146 49508146 T - DEL ADNP ENST00000349014 human ensembl 74_37 -1 known frame_shift_del c.3105 p.V1036fs 1.000 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2 - no_errors ADNP HGNC ENSG00000101126 160 0 0 97 26 21.1382 PCMTD2 0 genome.wustl.edu 37 20 62904825 62904827 + In_Frame_Del DEL GAA GAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GAA GAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 20 62904825 62904827 GAA - DEL PCMTD2 ENST00000308824 human ensembl 74_37 +1 known in_frame_del c.958_960 p.E323in_frame_del 1.000:1.000:0.996 NULL pfam_PCMT - no_errors PCMTD2 HGNC ENSG00000203880 178 0 0 78 11 12.3596 NRIP1 0 genome.wustl.edu 37 21 16338330 16338330 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 16338330 16338330 T - DEL NRIP1 ENST00000318948 human ensembl 74_37 -1 known frame_shift_del c.2184 p.E729fs 0.998 NULL NULL - no_errors NRIP1 HGNC ENSG00000180530 38 0 0 32 8 20 USP16 0 genome.wustl.edu 37 21 30426506 30426508 + In_Frame_Del DEL TAA TAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 TAA TAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 30426506 30426508 TAA - DEL USP16 ENST00000334352 human ensembl 74_37 +1 known in_frame_del c.2470_2472 p.*824in_frame_del 0.997:0.987:0.983 NULL pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67 - no_errors USP16 HGNC ENSG00000156256 34 0 0 13 3 18.75 ITSN1 0 genome.wustl.edu 37 21 35209309 35209309 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 35209309 35209309 C - DEL ITSN1 ENST00000472548 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors ITSN1 HGNC ENSG00000205726 266 0 0 185 38 17.0404 DOPEY2 0 genome.wustl.edu 37 21 37586451 37586452 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 37586451 37586452 - T INS DOPEY2 ENST00000399151 human ensembl 74_37 +1 known frame_shift_ins c.977_978 p.E329fs 1.000:1.000 NULL pfam_Dopey_N - no_errors DOPEY2 HGNC ENSG00000142197 75 0 0 30 8 21.0526 MORC3 0 genome.wustl.edu 37 21 37741943 37741945 + In_Frame_Del DEL TAA TAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 TAA TAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 37741943 37741945 TAA - DEL MORC3 ENST00000400485 human ensembl 74_37 +1 known in_frame_del c.2277_2279 p.N760in_frame_del 1.000:0.996:0.996 NULL pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW - no_errors MORC3 HGNC ENSG00000159256 119 0 0 70 19 21.3483 DSCAM 0 genome.wustl.edu 37 21 41496183 41496183 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 41496183 41496183 G - DEL DSCAM ENST00000400454 human ensembl 74_37 -1 known frame_shift_del c.3635 p.P1212fs 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors DSCAM HGNC ENSG00000171587 188 0 0 122 26 17.5676 COL18A1 0 genome.wustl.edu 37 21 46925297 46925297 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 46925297 46925297 C - DEL COL18A1 ENST00000359759 human ensembl 74_37 +1 known frame_shift_del c.4284 p.P1430fs 0.947 NULL pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom - no_errors COL18A1 HGNC ENSG00000182871 15 0 0 6 3 33.3333 FTCD 0 genome.wustl.edu 37 21 47571590 47571591 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 47571590 47571591 - C INS FTCD ENST00000359679 human ensembl 74_37 -1 known frame_shift_ins c.518_517 p.A173fs 1.000:1.000 pfam_Formiminotransferase_N,superfamily_FormiminoTrfase_N/C_subdom,tigrfam_Formiminotransferase_cat pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat - no_errors FTCD HGNC ENSG00000160282 118 0 0 46 16 25.8065 MCM3AP 0 genome.wustl.edu 37 21 47662805 47662805 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 21 47662805 47662805 A - DEL MCM3AP ENST00000291688 human ensembl 74_37 -1 known frame_shift_del c.5337 p.F1779fs 1.000 NULL pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25 - no_errors MCM3AP HGNC ENSG00000160294 91 0 0 40 8 16.6667 CECR1 0 genome.wustl.edu 37 22 17690424 17690424 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 17690424 17690424 C - DEL CECR1 ENST00000262607 human ensembl 74_37 -1 known frame_shift_del c.144 p.R49fs 0.052 pfam_A_deaminase_N,tigrfam_Ad_deam-like pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like - no_errors CECR1 HGNC ENSG00000093072 60 0 0 30 4 11.7647 LIMK2 0 genome.wustl.edu 37 22 31672776 31672777 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 31672776 31672777 - C INS LIMK2 ENST00000340552 human ensembl 74_37 +1 putative frame_shift_ins c.1711_1712 p.G574fs 0.995:0.996 smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors LIMK2 HGNC ENSG00000182541 25 0 0 9 7 43.75 C22orf24 0 genome.wustl.edu 37 22 32334105 32334105 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 32334105 32334105 A - DEL C22orf24 ENST00000543051 human ensembl 74_37 -1 known frame_shift_del c.149 p.F50fs 0.000 NULL NULL - no_errors C22orf24 HGNC ENSG00000128254 130 0 0 71 24 25.2632 SSTR3 0 genome.wustl.edu 37 22 37602749 37602749 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 37602749 37602749 C - DEL SSTR3 ENST00000328544 human ensembl 74_37 -1 known frame_shift_del c.1094 p.G365fs 0.000 NULL pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt - no_errors SSTR3 HGNC ENSG00000183473 61 0 0 27 15 35.7143 DDX17 0 genome.wustl.edu 37 22 38895455 38895455 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 38895455 38895455 C - DEL DDX17 ENST00000396821 human ensembl 74_37 -1 known frame_shift_del c.488 p.G163fs 0.996 NULL pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX17 HGNC ENSG00000100201 181 0 0 116 34 22.6667 SLC25A17 0 genome.wustl.edu 37 22 41195058 41195058 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 41195058 41195058 A - DEL SLC25A17 ENST00000435456 human ensembl 74_37 -1 known frame_shift_del c.84 p.L30fs 0.972 pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier - no_errors SLC25A17 HGNC ENSG00000100372 66 0 0 48 11 18.6441 MLC1 0 genome.wustl.edu 37 22 50502593 50502595 + In_Frame_Del DEL AGC AGC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AGC AGC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50502593 50502595 AGC - DEL MLC1 ENST00000311597 human ensembl 74_37 -1 known in_frame_del c.929_927 p.L310in_frame_del 1.000:1.000:1.000 NULL NULL - no_errors MLC1 HGNC ENSG00000100427 31 0 0 32 5 13.5135 PLXNB2 0 genome.wustl.edu 37 22 50718147 50718147 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 50718147 50718147 T - DEL PLXNB2 ENST00000359337 human ensembl 74_37 -1 known frame_shift_del c.4301 p.K1434fs 1.000 pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom - no_errors PLXNB2 HGNC ENSG00000196576 232 0 0 171 22 11.399 ARSA 0 genome.wustl.edu 37 22 51063611 51063611 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 22 51063611 51063611 G - DEL ARSA ENST00000216124 human ensembl 74_37 -1 known frame_shift_del c.1492 p.R498fs 0.004 superfamily_Alkaline_phosphatase_core pfam_Sulfatase,superfamily_Alkaline_phosphatase_core - no_errors ARSA HGNC ENSG00000100299 14 0 0 4 2 33.3333 CCDC37 0 genome.wustl.edu 37 3 126142183 126142183 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 126142183 126142183 C - DEL CCDC37 ENST00000393425 human ensembl 74_37 +1 known frame_shift_del c.1101 p.T370fs 0.000 NULL superfamily_SuperAg_toxin_C - no_errors CCDC37 HGNC ENSG00000163885 78 0 0 48 6 11.1111 UROC1 0 genome.wustl.edu 37 3 126220106 126220106 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 126220106 126220106 T - DEL UROC1 ENST00000290868 human ensembl 74_37 -1 known frame_shift_del c.920 p.K307fs 1.000 pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase - no_errors UROC1 HGNC ENSG00000159650 238 1 0.41841 162 37 18.593 IFT122 0 genome.wustl.edu 37 3 129231234 129231234 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 129231234 129231234 C - DEL IFT122 ENST00000296266 human ensembl 74_37 +1 known frame_shift_del c.3119 p.S1042fs 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT122 HGNC ENSG00000163913 312 0 0 185 37 16.6667 NPHP3 0 genome.wustl.edu 37 3 132438662 132438662 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 132438662 132438662 T - DEL NPHP3 ENST00000337331 human ensembl 74_37 -1 known frame_shift_del c.406 p.T136fs 1.000 NULL pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors NPHP3 HGNC ENSG00000113971 24 0 0 14 7 33.3333 PBX2P1 0 genome.wustl.edu 37 3 142895292 142895292 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 142895292 142895292 G - DEL PBX2P1 ENST00000560287 human ensembl 74_37 +1 known rna NULL NULL 0.996 - - - no_errors PBX2P1 HGNC ENSG00000244171 68 0 0 28 8 22.2222 EAF1-AS1 0 genome.wustl.edu 37 3 15480599 15480599 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 15480599 15480599 T - DEL EAF1-AS1 ENST00000494875 human ensembl 74_37 -1 known rna NULL NULL 0.925 - - - no_errors EAF1-AS1 HGNC ENSG00000249786 21 0 0 15 9 37.5 WDR49 0 genome.wustl.edu 37 3 167223102 167223102 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 167223102 167223102 T - DEL WDR49 ENST00000308378 human ensembl 74_37 -1 known frame_shift_del c.1821 p.K607fs 0.005 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR49 HGNC ENSG00000174776 66 0 0 31 7 18.4211 EIF5A2 0 genome.wustl.edu 37 3 170624844 170624844 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 170624844 170624844 T - DEL EIF5A2 ENST00000295822 human ensembl 74_37 -1 known frame_shift_del c.204 p.K68fs 0.994 superfamily_Translation_prot_SH3-like,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A pfam_Transl_elong_IF5A_C,pfam_KOW,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A - no_errors EIF5A2 HGNC ENSG00000163577 89 0 0 62 8 11.4286 B3GNT5 0 genome.wustl.edu 37 3 182987674 182987674 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 182987674 182987674 T - DEL B3GNT5 ENST00000326505 human ensembl 74_37 +1 known frame_shift_del c.88 p.W32fs 0.912 NULL pfam_Glyco_trans_31,superfamily_Luciferase-like_dom - no_errors B3GNT5 HGNC ENSG00000176597 119 1 0.833333 88 26 22.807 SLC51A 0 genome.wustl.edu 37 3 195955038 195955038 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 195955038 195955038 G - DEL SLC51A ENST00000296327 human ensembl 74_37 +1 known frame_shift_del c.415 p.K141fs 1.000 pfam_Ost-alpha pfam_Ost-alpha - no_errors SLC51A HGNC ENSG00000163959 441 0 0 319 60 15.8311 IQCG 0 genome.wustl.edu 37 3 197670888 197670889 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 197670888 197670889 - T INS IQCG ENST00000265239 human ensembl 74_37 -1 known frame_shift_ins c.43_42 p.V14fs 0.000:0.001 NULL pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS - no_errors IQCG HGNC ENSG00000114473 178 0 0 111 26 18.9781 PDCD6IP 0 genome.wustl.edu 37 3 33896762 33896762 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 33896762 33896762 T - DEL PDCD6IP ENST00000495235 human ensembl 74_37 +1 known rna NULL NULL 0.286 - - - no_errors PDCD6IP HGNC ENSG00000170248 41 0 0 25 4 13.7931 ACAA1 0 genome.wustl.edu 37 3 38167150 38167150 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 38167150 38167150 G - DEL ACAA1 ENST00000333167 human ensembl 74_37 -1 known frame_shift_del c.1105 p.L369fs 0.916 pfam_Thiolase_C,pfam_ACP_syn_III_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase pfam_Thiolase_N,pfam_Thiolase_C,pfam_ACP_syn_III_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase - no_errors ACAA1 HGNC ENSG00000060971 88 0 0 61 15 19.7368 SCN11A 0 genome.wustl.edu 37 3 38949441 38949441 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 38949441 38949441 T - DEL SCN11A ENST00000302328 human ensembl 74_37 -1 known frame_shift_del c.1472 p.K491fs 0.352 NULL pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu - no_errors SCN11A HGNC ENSG00000168356 58 0 0 40 14 25.9259 PRSS45 0 genome.wustl.edu 37 3 46784467 46784467 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 46784467 46784467 G - DEL PRSS45 ENST00000442359 human ensembl 74_37 -1 known frame_shift_del c.389 p.P130fs 0.005 pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1 pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A - no_errors PRSS45 HGNC ENSG00000188086 59 0 0 30 7 18.9189 FBXW12 0 genome.wustl.edu 37 3 48419900 48419900 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 48419900 48419900 A - DEL FBXW12 ENST00000296438 human ensembl 74_37 +1 known frame_shift_del c.499 p.T169fs 0.000 superfamily_Quino_amine_DH_bsu pfam_F-box_dom,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom - no_errors FBXW12 HGNC ENSG00000164049 42 0 0 28 9 24.3243 RBM6 0 genome.wustl.edu 37 3 50099450 50099450 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 50099450 50099450 A - DEL RBM6 ENST00000266022 human ensembl 74_37 +1 known frame_shift_del c.2495 p.K834fs 1.000 NULL pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom - no_errors RBM6 HGNC ENSG00000004534 57 0 0 34 10 22.7273 MAPKAPK3 0 genome.wustl.edu 37 3 50655080 50655080 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 50655080 50655080 G - DEL MAPKAPK3 ENST00000357955 human ensembl 74_37 +1 known frame_shift_del c.84 p.R31fs 0.000 superfamily_Kinase-like_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors MAPKAPK3 HGNC ENSG00000114738 181 0 0 83 21 20.1923 NISCH 0 genome.wustl.edu 37 3 52524146 52524146 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 52524146 52524146 C - DEL NISCH ENST00000345716 human ensembl 74_37 +1 known frame_shift_del c.3512 p.P1172fs 1.000 NULL pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox - no_errors NISCH HGNC ENSG00000010322 62 0 0 26 14 35 PBRM1 0 genome.wustl.edu 37 3 52678784 52678784 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 52678784 52678784 T - DEL PBRM1 ENST00000296302 human ensembl 74_37 -1 known frame_shift_del c.835 p.I279fs 1.000 superfamily_Bromodomain,smart_Bromodomain pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain - no_errors PBRM1 HGNC ENSG00000163939 28 0 0 11 6 35.2941 ACTR8 0 genome.wustl.edu 37 3 53910109 53910110 + Splice_Site INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 53910109 53910110 - G INS ACTR8 ENST00000335754 human ensembl 74_37 -1 known splice_site_ins c.779-3_779-2 e7-2 1.000:0.204 - - - no_errors ACTR8 HGNC ENSG00000113812 38 0 0 32 7 17.9487 FLNB 0 genome.wustl.edu 37 3 58089787 58089788 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 58089787 58089788 - G INS FLNB ENST00000295956 human ensembl 74_37 +1 known frame_shift_ins c.1585_1586 p.H532fs 1.000:1.000 pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like - no_errors FLNB HGNC ENSG00000136068 98 0 0 65 13 16.6667 MAGI1 0 genome.wustl.edu 37 3 65372849 65372850 + Frame_Shift_Ins INS - - TC TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 65372849 65372850 - TC INS MAGI1 ENST00000330909 human ensembl 74_37 -1 known frame_shift_ins c.2469_2468 p.I824fs 1.000:1.000 superfamily_PDZ pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like - no_errors MAGI1 HGNC ENSG00000151276 93 0 0 84 14 14.2857 BRPF1 0 genome.wustl.edu 37 3 9786026 9786027 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 9786026 9786027 - A INS BRPF1 ENST00000383829 human ensembl 74_37 +1 known frame_shift_ins c.2754_2755 p.N919fs 0.993:1.000 NULL pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain - no_errors BRPF1 HGNC ENSG00000156983 38 0 0 17 4 19.0476 GPR15 0 genome.wustl.edu 37 3 98251487 98251487 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 98251487 98251487 T - DEL GPR15 ENST00000284311 human ensembl 74_37 +1 known frame_shift_del c.610 p.F205fs 0.998 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt - no_errors GPR15 HGNC ENSG00000154165 99 0 0 48 25 34.2466 COL8A1 0 genome.wustl.edu 37 3 99513830 99513830 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 3 99513830 99513830 G - DEL COL8A1 ENST00000261037 human ensembl 74_37 +1 known frame_shift_del c.1085 p.G363fs 0.644 NULL pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q - no_errors COL8A1 HGNC ENSG00000144810 33 0 0 11 2 15.3846 SPRY1 0 genome.wustl.edu 37 4 124322833 124322834 + Frame_Shift_Ins INS - - GA TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 124322833 124322834 - GA INS SPRY1 ENST00000339241 human ensembl 74_37 +1 known frame_shift_ins c.87_88 p.I32fs 0.999:1.000 NULL pfam_Sprouty - no_errors SPRY1 HGNC ENSG00000164056 217 0 0 148 38 20.4301 ZNF330 0 genome.wustl.edu 37 4 142143532 142143532 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 142143532 142143532 A - DEL ZNF330 ENST00000262990 human ensembl 74_37 +1 known frame_shift_del c.7 p.K5fs 1.000 pfam_NOA36 pfam_NOA36 - no_errors ZNF330 HGNC ENSG00000109445 26 0 0 13 4 23.5294 RGS12 0 genome.wustl.edu 37 4 3430399 3430399 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 3430399 3430399 A - DEL RGS12 ENST00000344733 human ensembl 74_37 +1 known frame_shift_del c.3526 p.K1178fs 1.000 NULL pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom - no_errors RGS12 HGNC ENSG00000159788 58 0 0 51 5 8.92857 KLF3 0 genome.wustl.edu 37 4 38690460 38690460 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 38690460 38690460 A - DEL KLF3 ENST00000261438 human ensembl 74_37 +1 known frame_shift_del c.312 p.K106fs 0.008 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors KLF3 HGNC ENSG00000109787 125 0 0 99 24 19.5122 KLF3 0 genome.wustl.edu 37 4 38691476 38691476 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 38691476 38691476 C - DEL KLF3 ENST00000261438 human ensembl 74_37 +1 known frame_shift_del c.671 p.P226fs 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors KLF3 HGNC ENSG00000109787 247 1 0.403226 227 50 18.0505 RFC1 0 genome.wustl.edu 37 4 39324961 39324961 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 39324961 39324961 T - DEL RFC1 ENST00000381897 human ensembl 74_37 -1 known frame_shift_del c.719 p.K240fs 1.000 superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom - no_errors RFC1 HGNC ENSG00000035928 68 0 0 58 20 25.641 C4orf6 0 genome.wustl.edu 37 4 5527116 5527116 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 5527116 5527116 T - DEL C4orf6 ENST00000195455 human ensembl 74_37 +1 known frame_shift_del c.59 p.F23fs 0.077 NULL NULL - no_errors C4orf6 HGNC ENSG00000082929 20 0 0 7 6 46.1538 CEP135 0 genome.wustl.edu 37 4 56858229 56858229 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 56858229 56858229 A - DEL CEP135 ENST00000257287 human ensembl 74_37 +1 known frame_shift_del c.1987 p.T664fs 1.000 NULL superfamily_Prefoldin,superfamily_EB1_C - no_errors CEP135 HGNC ENSG00000174799 63 0 0 55 6 9.83607 AMBN 0 genome.wustl.edu 37 4 71467163 71467164 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 71467163 71467164 - A INS AMBN ENST00000322937 human ensembl 74_37 +1 known frame_shift_ins c.323_324 p.P109fs 1.000:1.000 pfam_Amelin,smart_Amelin pfam_Amelin,smart_Amelin - no_errors AMBN HGNC ENSG00000178522 271 1 0.367647 166 53 24.2009 SLC4A4 0 genome.wustl.edu 37 4 72215771 72215772 + Frame_Shift_Del DEL TC TC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 TC TC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 72215771 72215772 TC - DEL SLC4A4 ENST00000425175 human ensembl 74_37 +1 known frame_shift_del c.532_533 p.L179fs 1.000:1.000 pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk - no_errors SLC4A4 HGNC ENSG00000080493 122 0 0 101 26 20.4724 AFP 0 genome.wustl.edu 37 4 74313372 74313372 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 74313372 74313372 A - DEL AFP ENST00000395792 human ensembl 74_37 +1 known frame_shift_del c.1037 p.N348fs 0.959 pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein,prints_ALB/AFP/VDB - no_errors AFP HGNC ENSG00000081051 45 0 0 28 6 17.6471 AFM 0 genome.wustl.edu 37 4 74347531 74347532 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 74347531 74347532 - T INS AFM ENST00000226355 human ensembl 74_37 +1 known frame_shift_ins c.39_40 p.L15fs 0.970:0.970 pirsf_Serum_albumin/AFP pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein - no_errors AFM HGNC ENSG00000079557 65 0 0 15 4 21.0526 SDAD1 0 genome.wustl.edu 37 4 76877153 76877153 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 76877153 76877153 T - DEL SDAD1 ENST00000356260 human ensembl 74_37 -1 known frame_shift_del c.1991 p.N664fs 0.996 pfam_SDA1_dom pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold - no_errors SDAD1 HGNC ENSG00000198301 251 0 0 136 51 27.2727 ABLIM2 0 genome.wustl.edu 37 4 8021969 8021969 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 4 8021969 8021969 G - DEL ABLIM2 ENST00000447017 human ensembl 74_37 -1 known frame_shift_del c.1329 p.S444fs 0.908 NULL pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM2 HGNC ENSG00000163995 74 0 0 36 7 16.2791 SRFBP1 0 genome.wustl.edu 37 5 121355987 121355987 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 121355987 121355987 A - DEL SRFBP1 ENST00000339397 human ensembl 74_37 +1 known frame_shift_del c.557 p.I188fs 0.682 NULL pfam_Bud-site_select_BUD22 - no_errors SRFBP1 HGNC ENSG00000151304 55 0 0 24 15 38.4615 ZCCHC10 0 genome.wustl.edu 37 5 132335884 132335884 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 132335884 132335884 A - DEL ZCCHC10 ENST00000513541 human ensembl 74_37 -1 putative frame_shift_del c.279 p.P95fs 0.000 NULL superfamily_Znf_CCHC - no_errors ZCCHC10 HGNC ENSG00000155329 49 0 0 29 9 23.6842 CDC25C 0 genome.wustl.edu 37 5 137627690 137627690 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 137627690 137627690 T - DEL CDC25C ENST00000323760 human ensembl 74_37 -1 known frame_shift_del c.731 p.K244fs 0.395 pfam_MPI_Phosphatase pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase - no_errors CDC25C HGNC ENSG00000158402 111 1 0.892857 59 19 24.359 WDR55 0 genome.wustl.edu 37 5 140049102 140049102 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140049102 140049102 A - DEL WDR55 ENST00000358337 human ensembl 74_37 +1 known frame_shift_del c.1015 p.K341fs 1.000 pirsf_WD_repeat_p55 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR55 HGNC ENSG00000120314 28 0 0 18 4 18.1818 HARS 0 genome.wustl.edu 37 5 140054656 140054658 + In_Frame_Del DEL CTT CTT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CTT CTT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140054656 140054658 CTT - DEL HARS ENST00000504156 human ensembl 74_37 -1 known in_frame_del c.1257_1255 p.K419in_frame_del 1.000:1.000:1.000 pfam_Anticodon-bd,superfamily_Anticodon-bd,pirsf_HisRS/HisZ,tigrfam_His-tRNA-ligase pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase - no_errors HARS HGNC ENSG00000170445 71 0 0 40 7 14.8936 PCDHA4 0 genome.wustl.edu 37 5 140188275 140188276 + Frame_Shift_Del DEL GC GC - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 GC GC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140188275 140188276 GC - DEL PCDHA4 ENST00000530339 human ensembl 74_37 +1 known frame_shift_del c.1503_1504 p.L504fs 0.909:0.891 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA4 HGNC ENSG00000204967 152 0 0 67 16 19.2771 PCDHB2 0 genome.wustl.edu 37 5 140474590 140474590 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140474590 140474590 A - DEL PCDHB2 ENST00000194155 human ensembl 74_37 +1 known frame_shift_del c.216 p.M75fs 0.087 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB2 HGNC ENSG00000112852 80 0 0 60 16 21.0526 PCDHB13 0 genome.wustl.edu 37 5 140594607 140594607 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 140594607 140594607 A - DEL PCDHB13 ENST00000341948 human ensembl 74_37 +1 known frame_shift_del c.912 p.K306fs 0.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB13 HGNC ENSG00000187372 122 0 0 52 22 29.7297 RBM27 0 genome.wustl.edu 37 5 145647320 145647320 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 145647320 145647320 A - DEL RBM27 ENST00000265271 human ensembl 74_37 +1 known frame_shift_del c.2440 p.K816fs 1.000 NULL pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom - no_errors RBM27 HGNC ENSG00000091009 78 0 0 43 8 15.6863 SPINK5 0 genome.wustl.edu 37 5 147473960 147473960 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 147473960 147473960 T - DEL SPINK5 ENST00000359874 human ensembl 74_37 +1 known frame_shift_del c.710 p.C239fs 0.959 pfam_Kazal_dom,smart_Kazal_dom pfam_Kazal_dom,smart_Kazal_dom - no_errors SPINK5 HGNC ENSG00000133710 197 0 0 148 45 23.3161 PPARGC1B 0 genome.wustl.edu 37 5 149206386 149206386 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 149206386 149206386 C - DEL PPARGC1B ENST00000309241 human ensembl 74_37 +1 known frame_shift_del c.403 p.S137fs 0.982 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors PPARGC1B HGNC ENSG00000155846 129 0 0 85 27 24.1071 CSF1R 0 genome.wustl.edu 37 5 149449811 149449811 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 149449811 149449811 A - DEL CSF1R ENST00000286301 human ensembl 74_37 -1 known frame_shift_del c.1253 p.L418fs 0.657 pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors CSF1R HGNC ENSG00000182578 74 0 0 37 6 13.9535 RBM22 0 genome.wustl.edu 37 5 150072459 150072459 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 150072459 150072459 G - DEL RBM22 ENST00000199814 human ensembl 74_37 -1 known frame_shift_del c.1130 p.P377fs 1.000 NULL pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom - no_errors RBM22 HGNC ENSG00000086589 173 0 0 125 24 16.1074 EBF1 0 genome.wustl.edu 37 5 158139202 158139202 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 158139202 158139202 G - DEL EBF1 ENST00000313708 human ensembl 74_37 -1 known frame_shift_del c.1509 p.T504fs 0.960 NULL pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT - no_errors EBF1 HGNC ENSG00000164330 32 0 0 20 3 13.0435 HMMR 0 genome.wustl.edu 37 5 162917426 162917426 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 162917426 162917426 A - DEL HMMR ENST00000393915 human ensembl 74_37 +1 known frame_shift_del c.1993 p.K667fs 1.000 NULL NULL - no_errors HMMR HGNC ENSG00000072571 76 0 0 38 12 24 RICTOR 0 genome.wustl.edu 37 5 38949500 38949500 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 38949500 38949500 C - DEL RICTOR ENST00000296782 human ensembl 74_37 -1 known frame_shift_del c.4166 p.G1389fs 1.000 NULL superfamily_ARM-type_fold - no_errors RICTOR HGNC ENSG00000164327 59 0 0 40 7 14.8936 OXCT1 0 genome.wustl.edu 37 5 41794812 41794812 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 41794812 41794812 A - DEL OXCT1 ENST00000196371 human ensembl 74_37 -1 known frame_shift_del c.1139 p.F380fs 1.000 pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A - no_errors OXCT1 HGNC ENSG00000083720 69 0 0 51 15 22.7273 CDC20B 0 genome.wustl.edu 37 5 54415630 54415630 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 54415630 54415630 A - DEL CDC20B ENST00000322374 human ensembl 74_37 -1 known frame_shift_del c.1332 p.F444fs 0.968 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors CDC20B HGNC ENSG00000164287 87 0 0 71 9 11.25 MARVELD2 0 genome.wustl.edu 37 5 68715357 68715357 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 68715357 68715357 C - DEL MARVELD2 ENST00000325631 human ensembl 74_37 +1 known frame_shift_del c.145 p.P50fs 1.000 NULL pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel - no_errors MARVELD2 HGNC ENSG00000152939 119 0 0 75 10 11.7647 BDP1 0 genome.wustl.edu 37 5 70766233 70766233 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 70766233 70766233 T - DEL BDP1 ENST00000358731 human ensembl 74_37 +1 known frame_shift_del c.931 p.L313fs 1.000 superfamily_Homeodomain-like,smart_SANT/Myb superfamily_Homeodomain-like,smart_SANT/Myb - no_errors BDP1 HGNC ENSG00000145734 58 0 0 25 7 21.875 FASTKD3 0 genome.wustl.edu 37 5 7867143 7867144 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 7867143 7867144 - A INS FASTKD3 ENST00000264669 human ensembl 74_37 -1 known frame_shift_ins c.1054_1053 p.T351fs 0.955:0.939 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP - no_errors FASTKD3 HGNC ENSG00000124279 51 0 0 36 6 14.2857 PAPD4 0 genome.wustl.edu 37 5 78938656 78938657 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 78938656 78938657 - T INS PAPD4 ENST00000296783 human ensembl 74_37 +1 known frame_shift_ins c.674_675 p.Q228fs 0.846:0.988 NULL pfam_PAP_assoc - no_errors PAPD4 HGNC ENSG00000164329 23 0 0 17 9 34.6154 RASA1 0 genome.wustl.edu 37 5 86672789 86672789 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 86672789 86672789 T - DEL RASA1 ENST00000274376 human ensembl 74_37 +1 known frame_shift_del c.2276 p.L761fs 1.000 superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2 - no_errors RASA1 HGNC ENSG00000145715 109 0 0 76 6 7.31707 RASA1 0 genome.wustl.edu 37 5 86675571 86675571 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 5 86675571 86675571 A - DEL RASA1 ENST00000274376 human ensembl 74_37 +1 known frame_shift_del c.2507 p.N838fs 1.000 pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2 - no_errors RASA1 HGNC ENSG00000145715 51 0 0 44 6 12 GRIK2 0 genome.wustl.edu 37 6 102503432 102503432 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 102503432 102503432 A - DEL GRIK2 ENST00000421544 human ensembl 74_37 +1 known frame_shift_del c.2539 p.N849fs 1.000 NULL pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIK2 HGNC ENSG00000164418 90 0 0 53 14 20.8955 ENSG00000271730 0 genome.wustl.edu 37 6 109319968 109319969 + RNA DEL AA AA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AA AA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 109319968 109319969 AA - DEL ENSG00000271730 ENST00000605885 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.000 - - - no_errors RP11-787I22.3 Clone_based_vega_gene ENSG00000271730 54 0 0 26 8 23.5294 MCM9 0 genome.wustl.edu 37 6 119245098 119245098 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 119245098 119245098 A - DEL MCM9 ENST00000316316 human ensembl 74_37 -1 known frame_shift_del c.499 p.C167fs 0.999 superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase - no_errors MCM9 HGNC ENSG00000111877 124 0 0 85 26 23.4234 RNF217 0 genome.wustl.edu 37 6 125404041 125404042 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 125404041 125404042 - A INS RNF217 ENST00000560949 human ensembl 74_37 +1 known frame_shift_ins c.882_883 p.Q296fs 1.000:1.000 NULL pfam_Znf_C6HC,smart_Znf_C6HC - no_errors RNF217 HGNC ENSG00000146373 27 0 0 30 12 28.5714 KIAA0408 0 genome.wustl.edu 37 6 127771251 127771252 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 127771251 127771252 - T INS KIAA0408 ENST00000483725 human ensembl 74_37 -1 novel frame_shift_ins c.382_381 p.S127fs 0.000:0.001 NULL NULL - no_errors KIAA0408 HGNC ENSG00000189367 125 0 0 56 24 30 PTPRK 0 genome.wustl.edu 37 6 128411121 128411122 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 128411121 128411122 - G INS PTPRK ENST00000368227 human ensembl 74_37 -1 known frame_shift_ins c.1179_1178 p.T395fs 0.886:1.000 superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom - no_errors PTPRK HGNC ENSG00000152894 79 0 0 52 10 16.129 AKAP7 0 genome.wustl.edu 37 6 131481276 131481276 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 131481276 131481276 A - DEL AKAP7 ENST00000368123 human ensembl 74_37 +1 known frame_shift_del c.163 p.K57fs 0.449 pfam_Kinase-A_anchor_nucl_local_sig pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase - no_errors AKAP7 HGNC ENSG00000118507 61 0 0 37 17 31.4815 HBS1L 0 genome.wustl.edu 37 6 135318639 135318639 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 135318639 135318639 G - DEL HBS1L ENST00000367837 human ensembl 74_37 -1 known frame_shift_del c.695 p.P232fs 0.016 NULL pfam_HBS1-like_N,pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom - no_errors HBS1L HGNC ENSG00000112339 160 0 0 128 8 5.88235 IFNGR1 0 genome.wustl.edu 37 6 137519504 137519505 + Frame_Shift_Ins INS - - CT TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 137519504 137519505 - CT INS IFNGR1 ENST00000367739 human ensembl 74_37 -1 known frame_shift_ins c.1134_1133 p.S378fs 0.036:0.000 NULL pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu - no_errors IFNGR1 HGNC ENSG00000027697 121 0 0 96 20 17.2414 IFNGR1 0 genome.wustl.edu 37 6 137519505 137519506 + Frame_Shift_Del DEL CT CT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CT CT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 137519505 137519506 CT - DEL IFNGR1 ENST00000367739 human ensembl 74_37 -1 known frame_shift_del c.1133_1132 p.S378fs 0.000:0.000 NULL pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu - no_errors IFNGR1 HGNC ENSG00000027697 123 0 0 94 22 18.9655 SCAF8 0 genome.wustl.edu 37 6 155145472 155145472 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 155145472 155145472 T - DEL SCAF8 ENST00000367186 human ensembl 74_37 +1 known frame_shift_del c.2229 p.L745fs 1.000 NULL pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors SCAF8 HGNC ENSG00000213079 230 0 0 195 62 24.1245 ENSG00000235381 0 genome.wustl.edu 37 6 155575539 155575539 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 155575539 155575539 C - DEL ENSG00000235381 ENST00000435295 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors RP11-477D19.2 Clone_based_vega_gene ENSG00000235381 60 0 0 38 11 22.449 QKI 0 genome.wustl.edu 37 6 163899920 163899920 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 163899920 163899920 A - DEL QKI ENST00000361752 human ensembl 74_37 +1 known frame_shift_del c.394 p.K134fs 1.000 smart_KH_dom pfam_KH_dom_type_1,smart_KH_dom - no_errors QKI HGNC ENSG00000112531 58 0 0 57 12 17.3913 RBM24 0 genome.wustl.edu 37 6 17292449 17292450 + RNA DEL AA AA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 AA AA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 17292449 17292450 AA - DEL RBM24 ENST00000508508 human ensembl 74_37 +1 known rna NULL NULL 0.915:0.719 - - - no_errors RBM24 HGNC ENSG00000112183 20 0 0 8 10 55.5556 GPSM3 0 genome.wustl.edu 37 6 32159230 32159230 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 32159230 32159230 C - DEL GPSM3 ENST00000375040 human ensembl 74_37 -1 known frame_shift_del c.396 p.Q133fs 0.959 pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif - no_errors GPSM3 HGNC ENSG00000213654 136 0 0 61 11 15.2778 RPL10A 0 genome.wustl.edu 37 6 35437275 35437277 + In_Frame_Del DEL CAA CAA - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CAA CAA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 35437275 35437277 CAA - DEL RPL10A ENST00000322203 human ensembl 74_37 +1 known in_frame_del c.279_281 p.N94in_frame_del 0.998:1.000:1.000 pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1 pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1 - no_errors RPL10A HGNC ENSG00000198755 35 0 0 21 8 27.5862 GLTSCR1L 0 genome.wustl.edu 37 6 42832627 42832627 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 42832627 42832627 A - DEL GLTSCR1L ENST00000314073 human ensembl 74_37 +1 known frame_shift_del c.2683 p.T897fs 1.000 NULL NULL - no_errors GLTSCR1L HGNC ENSG00000112624 47 0 0 22 9 29.0323 PTK7 0 genome.wustl.edu 37 6 43097012 43097013 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 43097012 43097013 - G INS PTK7 ENST00000476760 human ensembl 74_37 +1 putative frame_shift_ins c.377_378 p.C129fs 0.000:0.592 NULL pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors PTK7 HGNC ENSG00000112655 40 0 0 14 3 17.6471 XPO5 0 genome.wustl.edu 37 6 43491633 43491634 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 43491633 43491634 - C INS XPO5 ENST00000265351 human ensembl 74_37 -1 known frame_shift_ins c.3588_3587 p.G1197fs 0.001:0.803 NULL pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N - no_errors XPO5 HGNC ENSG00000124571 153 0 0 72 27 27.2727 CDC5L 0 genome.wustl.edu 37 6 44371656 44371656 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 44371656 44371656 A - DEL CDC5L ENST00000371477 human ensembl 74_37 +1 known frame_shift_del c.650 p.K219fs 1.000 NULL pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors CDC5L HGNC ENSG00000096401 69 0 0 24 9 27.2727 TDRD6 0 genome.wustl.edu 37 6 46659410 46659410 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 46659410 46659410 A - DEL TDRD6 ENST00000316081 human ensembl 74_37 +1 known frame_shift_del c.3545 p.N1184fs 0.004 NULL pfam_Tudor,smart_Tudor,pfscan_Tudor - no_errors TDRD6 HGNC ENSG00000180113 38 0 0 23 10 30.303 CENPQ 0 genome.wustl.edu 37 6 49438701 49438702 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 49438701 49438702 - A INS CENPQ ENST00000335783 human ensembl 74_37 +1 known frame_shift_ins c.117_118 p.N41fs 0.002:0.806 NULL NULL - no_errors CENPQ HGNC ENSG00000031691 72 0 0 25 3 10.7143 FAM135A 0 genome.wustl.edu 37 6 71185391 71185392 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 71185391 71185392 - T INS FAM135A ENST00000418814 human ensembl 74_37 +1 known frame_shift_ins c.323_324 p.L110fs 0.999:1.000 NULL pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase - no_errors FAM135A HGNC ENSG00000082269 69 0 0 32 11 25.5814 MDN1 0 genome.wustl.edu 37 6 90432675 90432675 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 90432675 90432675 T - DEL MDN1 ENST00000369393 human ensembl 74_37 -1 known frame_shift_del c.5966 p.K1989fs 1.000 superfamily_P-loop_NTPase,pirsf_Midasin pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A - no_errors MDN1 HGNC ENSG00000112159 184 1 0.540541 110 37 25.1701 CASP8AP2 0 genome.wustl.edu 37 6 90576391 90576391 + RNA DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 6 90576391 90576391 A - DEL CASP8AP2 ENST00000237177 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors CASP8AP2 HGNC ENSG00000118412 14 0 0 15 3 16.6667 ZCWPW1 0 genome.wustl.edu 37 7 100017294 100017294 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 100017294 100017294 T - DEL ZCWPW1 ENST00000398027 human ensembl 74_37 -1 known frame_shift_del c.241 p.R81fs 0.014 NULL pfam_Znf_CW,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW - no_errors ZCWPW1 HGNC ENSG00000078487 61 0 0 43 6 12.2449 LRRC4 0 genome.wustl.edu 37 7 127670552 127670553 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 127670552 127670553 - G INS LRRC4 ENST00000249363 human ensembl 74_37 -1 known frame_shift_ins c.142_141 p.S47fs 0.999:0.994 smart_LRR-contain_N pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors LRRC4 HGNC ENSG00000128594 215 1 0.462963 88 21 19.2661 BRAF 0 genome.wustl.edu 37 7 140482927 140482927 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 140482927 140482927 G - DEL BRAF ENST00000288602 human ensembl 74_37 -1 known frame_shift_del c.1208 p.P403fs 1.000 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd - no_errors BRAF HGNC ENSG00000157764 50 0 0 31 7 18.4211 WEE2-AS1 0 genome.wustl.edu 37 7 141423729 141423729 + RNA DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 141423729 141423729 T - DEL WEE2-AS1 ENST00000459753 human ensembl 74_37 -1 known rna NULL NULL 0.003 - - - no_errors WEE2-AS1 HGNC ENSG00000228775 28 0 0 9 5 35.7143 TMEM139 0 genome.wustl.edu 37 7 142983605 142983605 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 142983605 142983605 C - DEL TMEM139 ENST00000359333 human ensembl 74_37 +1 known frame_shift_del c.334 p.Y114fs 0.999 NULL NULL - no_errors TMEM139 HGNC ENSG00000178826 193 0 0 127 34 21.118 ATG9B 0 genome.wustl.edu 37 7 150720307 150720307 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 150720307 150720307 G - DEL ATG9B ENST00000473698 human ensembl 74_37 -1 known rna NULL NULL 0.007 - - - no_errors ATG9B HGNC ENSG00000181652 125 1 0.793651 120 21 14.8936 FKBP9 0 genome.wustl.edu 37 7 33014804 33014804 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 33014804 33014804 C - DEL FKBP9 ENST00000538336 human ensembl 74_37 +1 known frame_shift_del c.537 p.N182fs 0.998 pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom - no_errors FKBP9 HGNC ENSG00000122642 119 0 0 75 10 11.7647 GLI3 0 genome.wustl.edu 37 7 42005573 42005573 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 42005573 42005573 G - DEL GLI3 ENST00000395925 human ensembl 74_37 -1 known frame_shift_del c.3098 p.P1033fs 0.131 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI3 HGNC ENSG00000106571 66 0 0 39 6 13.3333 HECW1 0 genome.wustl.edu 37 7 43590095 43590095 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 43590095 43590095 A - DEL HECW1 ENST00000395891 human ensembl 74_37 +1 known frame_shift_del c.4300 p.N1435fs 1.000 pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom - no_errors HECW1 HGNC ENSG00000002746 54 0 0 34 8 19.0476 POLM 0 genome.wustl.edu 37 7 44120414 44120414 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 44120414 44120414 G - DEL POLM ENST00000242248 human ensembl 74_37 -1 known frame_shift_del c.290 p.P97fs 0.047 superfamily_BRCT_dom,pirsf_TdT/Mu,pfscan_BRCT_dom pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like - no_errors POLM HGNC ENSG00000122678 170 1 0.584795 95 14 12.844 SUN3 0 genome.wustl.edu 37 7 48048635 48048635 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 48048635 48048635 A - DEL SUN3 ENST00000297325 human ensembl 74_37 -1 known frame_shift_del c.326 p.L109fs 0.992 NULL pfam_Sad1_UNC_C,superfamily_Galactose-bd-like - no_errors SUN3 HGNC ENSG00000164744 127 0 0 74 18 19.5652 C7orf63 0 genome.wustl.edu 37 7 89874708 89874708 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 89874708 89874708 C - DEL C7orf63 ENST00000485791 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors C7orf63 HGNC ENSG00000105792 29 0 0 13 10 43.4783 CCDC132 0 genome.wustl.edu 37 7 92885827 92885827 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 7 92885827 92885827 A - DEL CCDC132 ENST00000305866 human ensembl 74_37 +1 known frame_shift_del c.304 p.V104fs 1.000 pfam_Vacuolar_sorting-assoc_54 pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C - no_errors CCDC132 HGNC ENSG00000004766 60 0 0 38 6 13.6364 RGS22 0 genome.wustl.edu 37 8 100990178 100990178 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 100990178 100990178 T - DEL RGS22 ENST00000360863 human ensembl 74_37 -1 known frame_shift_del c.3486 p.K1162fs 0.010 NULL pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam - no_errors RGS22 HGNC ENSG00000132554 56 0 0 20 22 52.381 UBR5 0 genome.wustl.edu 37 8 103289349 103289349 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 103289349 103289349 T - DEL UBR5 ENST00000520539 human ensembl 74_37 -1 known frame_shift_del c.6360 p.E2121fs 0.987 NULL pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin - no_errors UBR5 HGNC ENSG00000104517 118 1 0.840336 77 17 18.0851 DCAF13 0 genome.wustl.edu 37 8 104439487 104439487 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 104439487 104439487 T - DEL DCAF13 ENST00000519682 human ensembl 74_37 +1 putative frame_shift_del c.619 p.F209fs 0.001 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DCAF13 HGNC ENSG00000164934 31 0 0 23 3 11.5385 DEPTOR 0 genome.wustl.edu 37 8 121015322 121015322 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 121015322 121015322 C - DEL DEPTOR ENST00000286234 human ensembl 74_37 +1 known frame_shift_del c.897 p.P301fs 1.000 NULL pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ - no_errors DEPTOR HGNC ENSG00000155792 60 0 0 40 7 14.8936 ZC3H3 0 genome.wustl.edu 37 8 144522386 144522387 + In_Frame_Ins INS - - GAG TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 144522386 144522387 - GAG INS ZC3H3 ENST00000262577 human ensembl 74_37 -1 known in_frame_ins c.2640_2639 p.882in_frame_insS 0.000:0.000 NULL pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZC3H3 HGNC ENSG00000014164 11 0 0 11 7 38.8889 SLC52A2 0 genome.wustl.edu 37 8 145582874 145582875 + RNA INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 145582874 145582875 - A INS SLC52A2 ENST00000526891 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.000 - - - no_errors SLC52A2 HGNC ENSG00000185803 43 0 0 12 5 29.4118 BMP1 0 genome.wustl.edu 37 8 22056713 22056714 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 22056713 22056714 - C INS BMP1 ENST00000397816 human ensembl 74_37 +1 known frame_shift_ins c.2286_2287 p.L764fs 0.998:0.998 pirsf_BMP_1/tolloid-like pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom - no_errors BMP1 HGNC ENSG00000168487 159 0 0 106 24 18.4615 FZD3 0 genome.wustl.edu 37 8 28385159 28385159 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 28385159 28385159 T - DEL FZD3 ENST00000240093 human ensembl 74_37 +1 known frame_shift_del c.882 p.F296fs 1.000 pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled - no_errors FZD3 HGNC ENSG00000104290 97 0 0 59 12 16.9014 TEX15 0 genome.wustl.edu 37 8 30702947 30702947 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 30702947 30702947 A - DEL TEX15 ENST00000256246 human ensembl 74_37 -1 known frame_shift_del c.3587 p.L1196fs 0.013 NULL NULL - no_errors TEX15 HGNC ENSG00000133863 19 0 0 6 3 33.3333 GOT1L1 0 genome.wustl.edu 37 8 37791834 37791834 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 37791834 37791834 T - DEL GOT1L1 ENST00000307599 human ensembl 74_37 -1 known frame_shift_del c.1243 p.T415fs 0.000 NULL pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans - no_errors GOT1L1 HGNC ENSG00000169154 89 0 0 55 16 22.5352 SFRP1 0 genome.wustl.edu 37 8 41164365 41164366 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 41164365 41164366 - C INS SFRP1 ENST00000379845 human ensembl 74_37 -1 putative frame_shift_ins c.12_11 p.N5fs 0.000:0.000 NULL pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain - no_errors SFRP1 HGNC ENSG00000104332 37 0 0 15 5 25 ANK1 0 genome.wustl.edu 37 8 41573253 41573253 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 41573253 41573253 G - DEL ANK1 ENST00000396942 human ensembl 74_37 -1 known frame_shift_del c.1519 p.L507fs 0.971 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt - no_errors ANK1 HGNC ENSG00000029534 124 0 0 66 20 23.2558 SGK3 0 genome.wustl.edu 37 8 67716612 67716612 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 67716612 67716612 A - DEL SGK3 ENST00000345714 human ensembl 74_37 +1 known frame_shift_del c.183 p.K63fs 1.000 pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom - no_errors SGK3 HGNC ENSG00000104205 66 0 0 26 10 27.7778 ARFGEF1 0 genome.wustl.edu 37 8 68140283 68140284 + Frame_Shift_Ins INS - - T TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 68140283 68140284 - T INS ARFGEF1 ENST00000262215 human ensembl 74_37 -1 known frame_shift_ins c.3506_3505 p.I1169fs 1.000:1.000 superfamily_ARM-type_fold pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom - no_errors ARFGEF1 HGNC ENSG00000066777 35 0 0 29 7 19.4444 PREX2 0 genome.wustl.edu 37 8 68965390 68965390 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 68965390 68965390 A - DEL PREX2 ENST00000288368 human ensembl 74_37 +1 known frame_shift_del c.1002 p.N336fs 0.998 smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain - no_errors PREX2 HGNC ENSG00000046889 62 0 0 56 19 25.3333 EYA1 0 genome.wustl.edu 37 8 72123392 72123392 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 72123392 72123392 T - DEL EYA1 ENST00000340726 human ensembl 74_37 -1 known frame_shift_del c.1697 p.K566fs 1.000 pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA - no_errors EYA1 HGNC ENSG00000104313 88 0 0 68 16 19.0476 ENSG00000253553 0 genome.wustl.edu 37 8 89339273 89339273 + RNA DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 89339273 89339273 G - DEL ENSG00000253553 ENST00000523254 human ensembl 74_37 +1 known rna NULL NULL 0.008 - - - no_errors RP11-586K2.1 Clone_based_vega_gene ENSG00000253553 73 0 0 37 13 26 TNKS 0 genome.wustl.edu 37 8 9609231 9609231 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 8 9609231 9609231 C - DEL TNKS ENST00000310430 human ensembl 74_37 +1 known frame_shift_del c.2945 p.S984fs 1.000 NULL pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt - no_errors TNKS HGNC ENSG00000173273 328 0 0 214 42 16.4062 TGFBR1 0 genome.wustl.edu 37 9 101907165 101907165 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 101907165 101907165 A - DEL TGFBR1 ENST00000374994 human ensembl 74_37 +1 known frame_shift_del c.1125 p.R377fs 0.992 pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors TGFBR1 HGNC ENSG00000106799 60 0 0 49 17 25.7576 SMC2 0 genome.wustl.edu 37 9 106878505 106878506 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 106878505 106878506 - G INS SMC2 ENST00000286398 human ensembl 74_37 +1 known frame_shift_ins c.1696_1697 p.E568fs 1.000:0.995 pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge - no_errors SMC2 HGNC ENSG00000136824 91 0 0 64 15 18.9873 TXNDC8 0 genome.wustl.edu 37 9 113091539 113091539 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 113091539 113091539 A - DEL TXNDC8 ENST00000374511 human ensembl 74_37 -1 known frame_shift_del c.162 p.F54fs 0.993 pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold - no_errors TXNDC8 HGNC ENSG00000204193 63 0 0 47 3 6 SVEP1 0 genome.wustl.edu 37 9 113171074 113171074 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 113171074 113171074 G - DEL SVEP1 ENST00000401783 human ensembl 74_37 -1 known frame_shift_del c.6806 p.P2269fs 0.026 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin - no_errors SVEP1 HGNC ENSG00000165124 181 0 0 156 25 13.8122 RABGAP1 0 genome.wustl.edu 37 9 125746957 125746957 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 125746957 125746957 A - DEL RABGAP1 ENST00000373647 human ensembl 74_37 +1 known frame_shift_del c.344 p.K116fs 0.972 NULL pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom - no_errors RABGAP1 HGNC ENSG00000011454 54 0 0 25 6 19.3548 CRB2 0 genome.wustl.edu 37 9 126129551 126129552 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 126129551 126129552 - G INS CRB2 ENST00000373631 human ensembl 74_37 +1 known frame_shift_ins c.855_856 p.V287fs 0.780:0.859 smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors CRB2 HGNC ENSG00000148204 55 0 0 17 7 29.1667 C9orf114 0 genome.wustl.edu 37 9 131591120 131591120 + Frame_Shift_Del DEL T T - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 131591120 131591120 T - DEL C9orf114 ENST00000361256 human ensembl 74_37 -1 known frame_shift_del c.102 p.K34fs 0.998 NULL pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold - no_errors C9orf114 HGNC ENSG00000198917 123 1 0.806452 68 25 26.8817 NUP214 0 genome.wustl.edu 37 9 134072669 134072671 + In_Frame_Del DEL CTT CTT - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 CTT CTT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 134072669 134072671 CTT - DEL NUP214 ENST00000451030 human ensembl 74_37 +1 known in_frame_del c.3791_3793 p.S1265in_frame_del 0.972:0.900:0.892 NULL smart_WD40_repeat - no_errors NUP214 HGNC ENSG00000126883 99 0 0 47 16 25.3968 CEL 0 genome.wustl.edu 37 9 135946570 135946570 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 135946570 135946570 C - DEL CEL ENST00000372080 human ensembl 74_37 +1 known frame_shift_del c.1690 p.T566fs 0.000 NULL pfam_CarbesteraseB,pfam_AB_hydrolase_3 - no_errors CEL HGNC ENSG00000170835 22 0 0 13 4 23.5294 LINC00094 0 genome.wustl.edu 37 9 136899776 136899776 + RNA DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 136899776 136899776 C - DEL LINC00094 ENST00000605164 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors LINC00094 HGNC ENSG00000235106 21 0 0 7 6 46.1538 NPDC1 0 genome.wustl.edu 37 9 139935411 139935411 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 139935411 139935411 C - DEL NPDC1 ENST00000371600 human ensembl 74_37 -1 known frame_shift_del c.645 p.Q216fs 0.000 pfam_NPDC1 pfam_NPDC1 - no_errors NPDC1 HGNC ENSG00000107281 29 0 0 36 7 16.2791 AQP7 0 genome.wustl.edu 37 9 33385690 33385690 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 33385690 33385690 G - DEL AQP7 ENST00000297988 human ensembl 74_37 -1 known frame_shift_del c.700 p.R234fs 0.779 pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_MIP - no_errors AQP7 HGNC ENSG00000165269 246 0 0 180 21 10.4478 DCTN3 0 genome.wustl.edu 37 9 34618718 34618719 + Frame_Shift_Ins INS - - C TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 34618718 34618719 - C INS DCTN3 ENST00000259632 human ensembl 74_37 -1 known frame_shift_ins c.136_135 p.N45fs 1.000:1.000 pfam_Dynactin_p22 pfam_Dynactin_p22 - no_errors DCTN3 HGNC ENSG00000137100 119 0 0 84 16 16 PTCH1 0 genome.wustl.edu 37 9 98209593 98209593 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb 9 98209593 98209593 G - DEL PTCH1 ENST00000331920 human ensembl 74_37 -1 known frame_shift_del c.3945 p.Y1316fs 1.000 NULL pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched - no_errors PTCH1 HGNC ENSG00000185920 124 0 0 58 11 15.942 MT-ND5 0 genome.wustl.edu 37 MT 12417 12418 + Frame_Shift_Ins INS - - A TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb MT 12417 12418 - A INS MT-ND5 ENST00000361567 human ensembl 74_37 +1 known frame_shift_ins c.81_82 p.N29fs NULL tigrfam_NADHpl_OxRdtase_5 pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5 - no_errors MT-ND5 HGNC ENSG00000198786 12 0 0 4 8 66.6667 HNRNPH2 0 genome.wustl.edu 37 X 100667857 100667857 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 100667857 100667857 G - DEL HNRNPH2 ENST00000316594 human ensembl 74_37 +1 known frame_shift_del c.881 p.L296fs 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom - no_errors HNRNPH2 HGNC ENSG00000126945 75 0 0 27 16 37.2093 BCORL1 0 genome.wustl.edu 37 X 129190011 129190011 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 129190011 129190011 C - DEL BCORL1 ENST00000303743 human ensembl 74_37 +1 known frame_shift_del c.5258 p.P1755fs 0.000 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors BCORL1 HGNC ENSG00000085185 49 0 0 10 18 64.2857 FAM47C 0 genome.wustl.edu 37 X 37028265 37028265 + Frame_Shift_Del DEL C C - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 37028265 37028265 C - DEL FAM47C ENST00000358047 human ensembl 74_37 +1 known frame_shift_del c.1782 p.P596fs 0.005 NULL NULL - no_errors FAM47C HGNC ENSG00000198173 96 0 0 48 21 30.4348 OTUD5 0 genome.wustl.edu 37 X 48780975 48780976 + Frame_Shift_Ins INS - - G TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 48780975 48780976 - G INS OTUD5 ENST00000156084 human ensembl 74_37 -1 known frame_shift_ins c.1529_1528 p.L510fs 0.980:0.982 NULL pfam_OTU,pfscan_OTU - no_errors OTUD5 HGNC ENSG00000068308 24 0 0 7 3 30 CACNA1F 0 genome.wustl.edu 37 X 49066409 49066409 + Frame_Shift_Del DEL G G - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 49066409 49066409 G - DEL CACNA1F ENST00000376265 human ensembl 74_37 -1 known frame_shift_del c.4715 p.P1572fs 1.000 NULL pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su - no_errors CACNA1F HGNC ENSG00000102001 87 0 0 23 35 60.3448 TAF1 0 genome.wustl.edu 37 X 70680578 70680578 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb X 70680578 70680578 A - DEL TAF1 ENST00000449580 human ensembl 74_37 +1 known frame_shift_del c.5423 p.N1809fs 1.000 pirsf_TAF1_animal pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain - no_errors TAF1 HGNC ENSG00000147133 16 0 0 2 6 75 UTY 0 genome.wustl.edu 37 Y 15411007 15411007 + Frame_Shift_Del DEL A A - TCGA-BR-7851-01A-11D-2201-08 TCGA-BR-7851-10A-01D-2201-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq f92f7feb-3623-4ccd-8cc1-e27f757f9b21 8c961372-743b-47d3-9bdf-0c75927bc4bb Y 15411007 15411007 A - DEL UTY ENST00000382896 human ensembl 74_37 -1 known frame_shift_del c.3542 p.L1181fs 1.000 pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors UTY HGNC ENSG00000183878 22 0 0 10 9 47.3684