Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HMGCS2	0	genome.wustl.edu	37	1	120293528	120293528	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	120293528	120293528	T	C	SNP	HMGCS2	ENST00000369406	human	ensembl	74_37	-1	known	missense	c.1424	p.N475S	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240				27	0	0	28	2	6.66667
CD1D	0	genome.wustl.edu	37	1	158151309	158151309	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	158151309	158151309	G	A	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	silent	c.126	p.T42	0.003	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				351	0	0	211	39	15.6
SPTA1	0	genome.wustl.edu	37	1	158613204	158613204	+	Silent	SNP	G	G	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	158613204	158613204	G	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.4350	p.I1450	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				52	0	0	41	5	10.8696
OR6N2	0	genome.wustl.edu	37	1	158746540	158746540	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	158746540	158746540	C	A	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	nonsense	c.886	p.E296*	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				134	0	0	128	12	8.57143
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				283	0	0	159	44	21.6749
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				293	1	0.340136	113	47	29.375
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				180	1	0.552486	60	39	39.3939
OR2T5	0	genome.wustl.edu	37	1	248652175	248652175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	248652175	248652175	G	A	SNP	OR2T5	ENST00000366473	human	ensembl	74_37	+1	known	missense	c.286	p.V96I	0.406	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T5	HGNC	ENSG00000203661				12	0	0	10	7	41.1765
PDE4B	0	genome.wustl.edu	37	1	66379016	66379016	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	66379016	66379016	G	T	SNP	PDE4B	ENST00000329654	human	ensembl	74_37	+1	known	missense	c.19	p.V7L	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588				61	0	0	58	4	6.45161
PTGER3	0	genome.wustl.edu	37	1	71512570	71512570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	1	71512570	71512570	C	T	SNP	PTGER3	ENST00000354608	human	ensembl	74_37	-1	known	missense	c.691	p.A231T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				254	0	0	166	9	5.14286
PITRM1	0	genome.wustl.edu	37	10	3185599	3185599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	10	3185599	3185599	G	A	SNP	PITRM1	ENST00000380989	human	ensembl	74_37	-1	known	missense	c.2630	p.T877M	0.534	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	-	no_errors	PITRM1	HGNC	ENSG00000107959				92	0	0	41	4	8.88889
OIT3	0	genome.wustl.edu	37	10	74684272	74684272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	10	74684272	74684272	C	T	SNP	OIT3	ENST00000334011	human	ensembl	74_37	+1	known	missense	c.1237	p.R413C	0.781	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	OIT3	HGNC	ENSG00000138315				136	0	0	132	7	5.03597
ATM	0	genome.wustl.edu	37	11	108128225	108128225	+	Silent	SNP	A	A	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	11	108128225	108128225	A	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	silent	c.2268	p.A756	0.999	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				61	0	0	69	6	8
TBCEL	0	genome.wustl.edu	37	11	120924372	120924372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	11	120924372	120924372	G	A	SNP	TBCEL	ENST00000422003	human	ensembl	74_37	+1	known	missense	c.386	p.R129H	1.000	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114				51	0	0	59	6	9.23077
ANO9	0	genome.wustl.edu	37	11	421037	421037	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	11	421037	421037	G	A	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	silent	c.1398	p.H466	0.822	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				80	0	0	40	4	9.09091
CD6	0	genome.wustl.edu	37	11	60783242	60783242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	11	60783242	60783242	C	T	SNP	CD6	ENST00000313421	human	ensembl	74_37	+1	known	missense	c.1445	p.S482L	0.176	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD6	HGNC	ENSG00000013725				180	0	0	145	13	8.22785
KCNK4	0	genome.wustl.edu	37	11	64064717	64064717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	11	64064717	64064717	G	A	SNP	KCNK4	ENST00000394525	human	ensembl	74_37	+1	known	missense	c.440	p.R147H	0.997	prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450				100	0	0	55	7	11.2903
NLRP14	0	genome.wustl.edu	37	11	7064768	7064768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	11	7064768	7064768	C	T	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	missense	c.1511	p.S504F	0.004	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077				85	0	0	83	8	8.79121
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				122	0	0	43	21	32.8125
SMARCC2	0	genome.wustl.edu	37	12	56559122	56559122	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	12	56559122	56559122	A	C	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.3119	p.V1040G	0.997	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				150	0	0	64	15	18.9873
BBS10	0	genome.wustl.edu	37	12	76740888	76740888	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	12	76740888	76740888	T	C	SNP	BBS10	ENST00000393262	human	ensembl	74_37	-1	known	missense	c.877	p.K293E	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS10	HGNC	ENSG00000179941				41	0	0	34	3	8.10811
NAV3	0	genome.wustl.edu	37	12	78569085	78569085	+	Splice_Site	SNP	G	G	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	12	78569085	78569085	G	T	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	splice_site	c.4982-1	e25-1	1.000	-	-	-	no_errors	NAV3	HGNC	ENSG00000067798				46	0	0	49	4	7.54717
RB1	0	genome.wustl.edu	37	13	48951169	48951169	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	13	48951169	48951169	A	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	missense	c.1331	p.Q444L	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				66	0	0	73	14	16.092
ARID4A	0	genome.wustl.edu	37	14	58795012	58795012	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	14	58795012	58795012	C	T	SNP	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	nonsense	c.640	p.R214*	1.000	pfam_RBB1NT	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				45	0	0	53	5	8.62069
RHOV	0	genome.wustl.edu	37	15	41165698	41165698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	15	41165698	41165698	T	C	SNP	RHOV	ENST00000220507	human	ensembl	74_37	-1	known	missense	c.269	p.E90G	1.000	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOV	HGNC	ENSG00000104140				168	0	0	98	6	5.76923
SPTBN5	0	genome.wustl.edu	37	15	42167137	42167137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	15	42167137	42167137	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.4405	p.R1469W	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				70	0	0	33	3	8.33333
EDC3	0	genome.wustl.edu	37	15	74963882	74963882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	15	74963882	74963882	T	C	SNP	EDC3	ENST00000315127	human	ensembl	74_37	-1	known	missense	c.398	p.Q133R	1.000	NULL	pfam_YjeF_N_dom,pfam_FDF_dom,superfamily_YjeF_N_dom	-	no_errors	EDC3	HGNC	ENSG00000179151				132	0	0	107	7	6.14035
TTLL13	0	genome.wustl.edu	37	15	90799471	90799471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	15	90799471	90799471	G	A	SNP	TTLL13	ENST00000438251	human	ensembl	74_37	+1	known	missense	c.647	p.R216Q	0.930	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL13	HGNC	ENSG00000213471				162	0	0	113	8	6.61157
GPT2	0	genome.wustl.edu	37	16	46956237	46956237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	16	46956237	46956237	G	A	SNP	GPT2	ENST00000340124	human	ensembl	74_37	+1	known	missense	c.1121	p.R374H	0.999	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GPT2	HGNC	ENSG00000166123				130	1	0.763359	82	6	6.81818
ZNF319	0	genome.wustl.edu	37	16	58030845	58030845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	16	58030845	58030845	G	A	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	missense	c.1325	p.A442V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				36	0	0	23	3	11.5385
DHX38	0	genome.wustl.edu	37	16	72130190	72130190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	16	72130190	72130190	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				65	0	0	62	8	11.4286
GRIN2A	0	genome.wustl.edu	37	16	9934865	9934865	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	16	9934865	9934865	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	silent	c.1425	p.Y475	0.968	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				139	0	0	133	19	12.5
SLC6A4	0	genome.wustl.edu	37	17	28539849	28539849	+	Silent	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	17	28539849	28539849	C	T	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	silent	c.1113	p.T371	0.508	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				101	0	0	81	7	7.95455
KRTAP3-1	0	genome.wustl.edu	37	17	39165178	39165178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	17	39165178	39165178	G	A	SNP	KRTAP3-1	ENST00000391588	human	ensembl	74_37	-1	known	missense	c.149	p.T50I	0.005	pfam_Keratin_matx	pfam_Keratin_matx	-	no_errors	KRTAP3-1	HGNC	ENSG00000212901				76	0	0	74	6	7.5
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				205	0	0	80	44	35.4839
SAFB	0	genome.wustl.edu	37	19	5667069	5667069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	19	5667069	5667069	C	T	SNP	SAFB	ENST00000588852	human	ensembl	74_37	+1	known	missense	c.2347	p.R783C	0.983	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633				188	0	0	112	23	17.037
GRHL1	0	genome.wustl.edu	37	2	10101324	10101324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	2	10101324	10101324	C	T	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	missense	c.428	p.T143M	1.000	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				59	0	0	55	4	6.77966
TPO	0	genome.wustl.edu	37	2	1544475	1544475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	2	1544475	1544475	G	A	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.2728	p.A910T	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				99	0	0	67	6	8.21918
CSRNP3	0	genome.wustl.edu	37	2	166535704	166535704	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	2	166535704	166535704	A	G	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1199	p.H400R	0.999	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				78	0	0	71	12	14.4578
TTN	0	genome.wustl.edu	37	2	179586749	179586749	+	Silent	SNP	A	A	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	2	179586749	179586749	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.18909	p.T6303	0.994	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				187	0	0	188	12	6
DNAH7	0	genome.wustl.edu	37	2	196825572	196825572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	2	196825572	196825572	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.2303	p.R768H	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				100	0	0	111	22	16.5414
CNRIP1	0	genome.wustl.edu	37	2	68520911	68520911	+	RNA	SNP	C	C	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	2	68520911	68520911	C	A	SNP	CNRIP1	ENST00000481714	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CNRIP1	HGNC	ENSG00000119865				31	0	0	21	5	19.2308
ACSS2	0	genome.wustl.edu	37	20	33508811	33508811	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	20	33508811	33508811	T	G	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1185	p.F395L	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069				297	1	0.33557	181	26	12.5604
SLC12A5	0	genome.wustl.edu	37	20	44664476	44664476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	20	44664476	44664476	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.409	p.V137I	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				77	0	0	53	7	11.6667
COL6A2	0	genome.wustl.edu	37	21	47552423	47552423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	21	47552423	47552423	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.3017	p.A1006V	0.528	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				50	0	0	24	3	11.1111
MRAS	0	genome.wustl.edu	37	3	138116252	138116252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	138116252	138116252	G	A	SNP	MRAS	ENST00000289104	human	ensembl	74_37	+1	known	missense	c.280	p.V94I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_EF_GTP-bd_dom,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_EF_GTP-bd_dom,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	MRAS	HGNC	ENSG00000158186				97	0	0	44	5	10.2041
SLITRK3	0	genome.wustl.edu	37	3	164906811	164906811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	164906811	164906811	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	missense	c.1808	p.R603H	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871				66	0	0	61	4	6.15385
KLHL24	0	genome.wustl.edu	37	3	183368817	183368817	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	183368817	183368817	A	C	SNP	KLHL24	ENST00000242810	human	ensembl	74_37	+1	known	missense	c.673	p.K225Q	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796				81	0	0	91	9	9
TP63	0	genome.wustl.edu	37	3	189582154	189582154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	189582154	189582154	C	T	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	missense	c.713	p.T238M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282				113	0	0	86	6	6.52174
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				191	1	0.520833	92	31	25.2033
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				267	1	0.373134	104	55	34.5912
TRIM2	0	genome.wustl.edu	37	4	154191516	154191516	+	Silent	SNP	C	C	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	4	154191516	154191516	C	A	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	silent	c.60	p.G20	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				159	0	0	132	18	12
MARCH1	0	genome.wustl.edu	37	4	164466833	164466833	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	4	164466833	164466833	G	A	SNP	MARCH1	ENST00000274056	human	ensembl	74_37	-1	known	silent	c.486	p.H162	0.915	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH1	HGNC	ENSG00000145416				94	0	0	93	14	13.0841
FRG1	0	genome.wustl.edu	37	4	190874255	190874255	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	4	190874255	190874255	A	T	SNP	FRG1	ENST00000226798	human	ensembl	74_37	+1	known	missense	c.292	p.T98S	1.000	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536				29	0	0	33	7	17.5
WDFY3	0	genome.wustl.edu	37	4	85715865	85715865	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	4	85715865	85715865	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.3294	p.S1098	0.997	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				51	0	0	66	5	7.04225
ACSL6	0	genome.wustl.edu	37	5	131326567	131326567	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	131326567	131326567	G	A	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	missense	c.364	p.R122C	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				141	0	0	74	5	6.32911
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				185	0	0	74	54	42.1875
PCDHA11	0	genome.wustl.edu	37	5	140250589	140250589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	140250589	140250589	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.1901	p.R634H	0.929	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				213	1	0.46729	93	8	7.92079
PCDHB6	0	genome.wustl.edu	37	5	140530549	140530549	+	Silent	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	140530549	140530549	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	silent	c.711	p.N237	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				71	0	0	41	4	8.88889
PCDHB11	0	genome.wustl.edu	37	5	140581312	140581312	+	Silent	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	140581312	140581312	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	silent	c.1965	p.T655	0.232	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				153	0	0	89	6	6.31579
FAM71B	0	genome.wustl.edu	37	5	156592829	156592829	+	Silent	SNP	T	T	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	156592829	156592829	T	C	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	silent	c.351	p.L117	0.676	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				96	0	0	60	6	9.09091
PCSK1	0	genome.wustl.edu	37	5	95768636	95768636	+	Silent	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	5	95768636	95768636	C	T	SNP	PCSK1	ENST00000311106	human	ensembl	74_37	-1	known	silent	c.111	p.A37	0.992	superfamily_Prot_inh_propept	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426				242	0	0	175	16	8.37696
DLL1	0	genome.wustl.edu	37	6	170592163	170592163	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	6	170592163	170592163	G	A	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	silent	c.2079	p.D693	0.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				187	0	0	121	22	15.3846
HTR1B	0	genome.wustl.edu	37	6	78172596	78172596	+	Silent	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	6	78172596	78172596	G	A	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	silent	c.525	p.V175	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				136	0	0	79	6	7.05882
GPER1	0	genome.wustl.edu	37	7	1132016	1132016	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	7	1132016	1132016	G	C	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.652	p.E218Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				46	0	0	15	13	46.4286
ZNF775	0	genome.wustl.edu	37	7	150093795	150093795	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	7	150093795	150093795	C	A	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	missense	c.226	p.P76T	0.567	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				22	0	0	18	3	14.2857
ZNF775	0	genome.wustl.edu	37	7	150093796	150093796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	7	150093796	150093796	C	T	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	missense	c.227	p.P76L	0.566	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				22	0	0	18	3	14.2857
HOXA13	0	genome.wustl.edu	37	7	27239615	27239615	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	7	27239615	27239615	C	A	SNP	HOXA13	ENST00000222753	human	ensembl	74_37	-1	known	missense	c.82	p.A28S	1.000	NULL	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1	-	no_errors	HOXA13	HGNC	ENSG00000106031				35	0	0	19	3	13.6364
TBL2	0	genome.wustl.edu	37	7	72984991	72984991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	7	72984991	72984991	C	T	SNP	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	missense	c.1190	p.R397Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				84	0	0	52	7	11.8644
TFPI2	0	genome.wustl.edu	37	7	93519622	93519622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	7	93519622	93519622	G	A	SNP	TFPI2	ENST00000222543	human	ensembl	74_37	-1	known	missense	c.98	p.A33V	0.001	pirsf_Prot_inhib_I2_TFPI,superfamily_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825				89	0	0	80	10	11.1111
ZFPM2	0	genome.wustl.edu	37	8	106814511	106814511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	8	106814511	106814511	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.2201	p.R734H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				43	0	0	38	3	7.31707
ZMAT4	0	genome.wustl.edu	37	8	40554842	40554842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	8	40554842	40554842	C	T	SNP	ZMAT4	ENST00000297737	human	ensembl	74_37	-1	known	missense	c.271	p.D91N	0.999	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT4	HGNC	ENSG00000165061				112	0	0	90	6	6.25
TOX	0	genome.wustl.edu	37	8	59728015	59728015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	8	59728015	59728015	G	A	SNP	TOX	ENST00000361421	human	ensembl	74_37	-1	known	missense	c.1274	p.P425L	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX	HGNC	ENSG00000198846				60	0	0	47	7	12.963
PI15	0	genome.wustl.edu	37	8	75757681	75757681	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	8	75757681	75757681	G	A	SNP	PI15	ENST00000260113	human	ensembl	74_37	+1	known	nonsense	c.590	p.W197*	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558				76	0	0	82	7	7.86517
CIZ1	0	genome.wustl.edu	37	9	130940663	130940663	+	Silent	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	9	130940663	130940663	C	T	SNP	CIZ1	ENST00000538431	human	ensembl	74_37	-1	known	silent	c.1605	p.A535	0.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337				207	0	0	159	16	9.14286
C9orf171	0	genome.wustl.edu	37	9	135374767	135374767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	9	135374767	135374767	C	T	SNP	C9orf171	ENST00000343036	human	ensembl	74_37	+1	known	missense	c.412	p.R138C	1.000	NULL	NULL	-	no_errors	C9orf171	HGNC	ENSG00000188523				127	0	0	65	6	8.4507
TMEM8C	0	genome.wustl.edu	37	9	136379890	136379890	+	Silent	SNP	A	A	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	9	136379890	136379890	A	G	SNP	TMEM8C	ENST00000339996	human	ensembl	74_37	-1	known	silent	c.534	p.Y178	0.994	pfam_DUF3522	pfam_DUF3522	-	no_errors	TMEM8C	HGNC	ENSG00000187616				124	0	0	53	7	11.6667
GLT6D1	0	genome.wustl.edu	37	9	138518015	138518015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	9	138518015	138518015	C	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.157	p.A53P	0.987	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				133	0	0	68	20	22.7273
NSMF	0	genome.wustl.edu	37	9	140350865	140350865	+	Silent	SNP	T	T	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	9	140350865	140350865	T	C	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	silent	c.702	p.Q234	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				521	0	0	246	18	6.81818
PLXNB3	0	genome.wustl.edu	37	X	153036951	153036951	+	Silent	SNP	C	C	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	X	153036951	153036951	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	silent	c.2427	p.Y809	0.941	superfamily_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				47	0	0	17	5	22.7273
MAP7D2	0	genome.wustl.edu	37	X	20081624	20081624	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	X	20081624	20081624	G	A	SNP	MAP7D2	ENST00000379643	human	ensembl	74_37	-1	known	nonsense	c.280	p.R94*	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D2	HGNC	ENSG00000184368				66	0	0	55	7	11.2903
NPIPA5	0	genome.wustl.edu	37	16	15457565	15457566	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	16	15457565	15457566	AC	-	DEL	NPIPA5	ENST00000360151	human	ensembl	74_37	-1	novel	frame_shift_del	c.1004_1003	p.V335fs	0.000:0.000	NULL	NULL	-	no_errors	NPIPA5	HGNC	ENSG00000183793				17	0	0	14	3	17.6471
RPL12P38	0	genome.wustl.edu	37	17	58512419	58512419	+	RNA	DEL	A	A	-			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	17	58512419	58512419	A	-	DEL	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL12P38	HGNC	ENSG00000213228				21	0	0	10	3	23.0769
KDM6B	0	genome.wustl.edu	37	17	7751764	7751765	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	17	7751764	7751765	-	C	INS	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	frame_shift_ins	c.2158_2159	p.Q722fs	0.013:0.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				239	0	0	126	7	5.26316
RYR1	0	genome.wustl.edu	37	19	39019604	39019606	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	19	39019604	39019606	AGG	-	DEL	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	in_frame_del	c.11048_11050	p.E3687in_frame_del	1.000:1.000:1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				28	0	0	24	3	11.1111
SAE1	0	genome.wustl.edu	37	19	47712448	47712450	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	19	47712448	47712450	CTT	-	DEL	SAE1	ENST00000270225	human	ensembl	74_37	+1	known	in_frame_del	c.981_983	p.F331in_frame_del	1.000:1.000:1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like	-	no_errors	SAE1	HGNC	ENSG00000142230				112	1	0.884956	91	13	12.5
MYH14	0	genome.wustl.edu	37	19	50766585	50766587	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	19	50766585	50766587	CAG	-	DEL	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	in_frame_del	c.2602_2604	p.Q871in_frame_del	1.000:1.000:1.000	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				12	0	0	3	2	40
SMTN	0	genome.wustl.edu	37	22	31485922	31485922	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	22	31485922	31485922	C	-	DEL	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	frame_shift_del	c.709	p.S239fs	0.420	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				28	0	0	14	2	12.5
ZNF717	0	genome.wustl.edu	37	3	75790810	75790811	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	3	75790810	75790811	-	T	INS	ZNF717	ENST00000422325	human	ensembl	74_37	-1	known	frame_shift_ins	c.135_134	p.L46fs	0.999:0.997	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF717	HGNC	ENSG00000227124				8	0	0	4	3	42.8571
C4orf46	0	genome.wustl.edu	37	4	159590922	159590923	+	Splice_Site	INS	-	-	A			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	4	159590922	159590923	-	A	INS	C4orf46	ENST00000379205	human	ensembl	74_37	-1	known	splice_site_ins	c.187-3_187-2	e2-2	1.000:0.981	-	-	-	no_errors	C4orf46	HGNC	ENSG00000205208				33	0	0	35	2	5.40541
ENSG00000236986	0	genome.wustl.edu	37	9	134008391	134008392	+	RNA	INS	-	-	T			TCGA-BR-A4J2-01A-21D-A25D-08	TCGA-BR-A4J2-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cd0e3b-9ffe-4231-a81d-1be43a73c495	2dda3e71-60cd-4ef0-8717-e4ea2fb2fa58	9	134008391	134008392	-	T	INS	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986				20	0	0	22	3	12