Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF GPR61 0 genome.wustl.edu 37 1 110086752 110086752 + Missense_Mutation SNP C C A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 110086752 110086752 C A SNP GPR61 ENST00000404129 human ensembl 74_37 +1 known missense c.1108 p.L370M 1.000 NULL pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM - no_errors GPR61 HGNC ENSG00000156097 37 0 0 19 5 20.8333 ACAP3 0 genome.wustl.edu 37 1 1233424 1233424 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 1233424 1233424 T C SNP ACAP3 ENST00000353662 human ensembl 74_37 -1 known missense c.859 p.R287G 1.000 pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_ArfGAP,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP - no_errors ACAP3 HGNC ENSG00000131584 14 0 0 12 2 14.2857 PRAMEF1 0 genome.wustl.edu 37 1 12854440 12854440 + Silent SNP A A C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 12854440 12854440 A C SNP PRAMEF1 ENST00000332296 human ensembl 74_37 +1 known silent c.664 p.R222 0.005 NULL NULL - no_errors PRAMEF1 HGNC ENSG00000116721 231 0 0 179 17 8.67347 HRNR 0 genome.wustl.edu 37 1 152187276 152187276 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 152187276 152187276 C T SNP HRNR ENST00000368801 human ensembl 74_37 -1 known missense c.6829 p.G2277S 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom - no_errors HRNR HGNC ENSG00000197915 42 0 0 25 3 10.7143 FLG 0 genome.wustl.edu 37 1 152284143 152284143 + Silent SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 152284143 152284143 A G SNP FLG ENST00000368799 human ensembl 74_37 -1 known silent c.3219 p.D1073 0.000 pfam_Filaggrin,prints_Filaggrin pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin - no_errors FLG HGNC ENSG00000143631 376 0 0 233 75 24.3506 FLG2 0 genome.wustl.edu 37 1 152324606 152324606 + Missense_Mutation SNP T T G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 152324606 152324606 T G SNP FLG2 ENST00000388718 human ensembl 74_37 -1 known missense c.5656 p.S1886R 0.001 NULL pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin - no_errors FLG2 HGNC ENSG00000143520 132 0 0 91 27 22.8814 ZNF281 0 genome.wustl.edu 37 1 200378016 200378016 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 200378016 200378016 G A SNP ZNF281 ENST00000294740 human ensembl 74_37 -1 known missense c.818 p.S273F 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF281 HGNC ENSG00000162702 38 0 0 21 5 19.2308 SYT14 0 genome.wustl.edu 37 1 210334256 210334256 + Missense_Mutation SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 210334256 210334256 A G SNP SYT14 ENST00000422431 human ensembl 74_37 +1 known missense c.1729 p.R577G 1.000 pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom - no_errors SYT14 HGNC ENSG00000143469 67 0 0 38 9 19.1489 ESRRG 0 genome.wustl.edu 37 1 216850654 216850654 + Missense_Mutation SNP A A C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 216850654 216850654 A C SNP ESRRG ENST00000408911 human ensembl 74_37 -1 known missense c.236 p.L79R 1.000 NULL pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt - no_errors ESRRG HGNC ENSG00000196482 44 0 0 42 4 8.69565 WNT3A 0 genome.wustl.edu 37 1 228246882 228246882 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 228246882 228246882 C T SNP WNT3A ENST00000366753 human ensembl 74_37 +1 known missense c.775 p.R259C 1.000 pfam_Wnt,smart_Wnt pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3 - no_errors WNT3A HGNC ENSG00000154342 27 0 0 13 5 27.7778 HEATR1 0 genome.wustl.edu 37 1 236723047 236723047 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 236723047 236723047 C T SNP HEATR1 ENST00000366582 human ensembl 74_37 -1 known silent c.4737 p.A1579 0.021 superfamily_ARM-type_fold pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold - no_errors HEATR1 HGNC ENSG00000119285 56 0 0 27 12 30.7692 GRHL3 0 genome.wustl.edu 37 1 24669504 24669504 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 24669504 24669504 C T SNP GRHL3 ENST00000350501 human ensembl 74_37 +1 known missense c.1408 p.R470C 1.000 NULL pfam_CP2,superfamily_C2_dom - no_errors GRHL3 HGNC ENSG00000158055 100 0 0 67 18 21.1765 OR2G2 0 genome.wustl.edu 37 1 247752194 247752194 + Missense_Mutation SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 247752194 247752194 A G SNP OR2G2 ENST00000320065 human ensembl 74_37 +1 known missense c.533 p.D178G 0.025 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2G2 HGNC ENSG00000177489 85 0 0 46 19 29.2308 CSMD2 0 genome.wustl.edu 37 1 34042979 34042979 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 34042979 34042979 C T SNP CSMD2 ENST00000373381 human ensembl 74_37 -1 known missense c.7493 p.R2498H 1.000 pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP - no_errors CSMD2 HGNC ENSG00000121904 60 0 0 30 7 18.9189 LRRC8B 0 genome.wustl.edu 37 1 90058454 90058454 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 90058454 90058454 T C SNP LRRC8B ENST00000330947 human ensembl 74_37 +1 known missense c.2264 p.L755P 1.000 pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC8B HGNC ENSG00000197147 44 0 0 25 9 26.4706 LRRC8C 0 genome.wustl.edu 37 1 90180288 90180288 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 90180288 90180288 G A SNP LRRC8C ENST00000370454 human ensembl 74_37 +1 known missense c.2159 p.S720N 1.000 smart_Leu-rich_rpt_typical-subtyp pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC8C HGNC ENSG00000171488 31 0 0 16 4 20 CA6 0 genome.wustl.edu 37 1 9030997 9030997 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 9030997 9030997 G A SNP CA6 ENST00000377443 human ensembl 74_37 +1 known silent c.801 p.Q267 1.000 pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a - no_errors CA6 HGNC ENSG00000131686 70 0 0 47 11 18.9655 SEC23IP 0 genome.wustl.edu 37 10 121658153 121658153 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 121658153 121658153 C T SNP SEC23IP ENST00000369075 human ensembl 74_37 +1 known silent c.378 p.S126 1.000 NULL pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD - no_errors SEC23IP HGNC ENSG00000107651 74 0 0 52 20 27.7778 MCM10 0 genome.wustl.edu 37 10 13234491 13234491 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 13234491 13234491 G A SNP MCM10 ENST00000484800 human ensembl 74_37 +1 known silent c.1671 p.S557 0.020 pfam_Rep_factor_Mcm10 pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG - no_errors MCM10 HGNC ENSG00000065328 42 0 0 23 10 30.303 FRG2B 0 genome.wustl.edu 37 10 135438753 135438753 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 135438753 135438753 G A SNP FRG2B ENST00000425520 human ensembl 74_37 -1 known silent c.687 p.T229 0.707 NULL NULL - no_errors FRG2B HGNC ENSG00000225899 11 0 0 6 3 33.3333 VIM 0 genome.wustl.edu 37 10 17276765 17276765 + Missense_Mutation SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 17276765 17276765 A G SNP VIM ENST00000224237 human ensembl 74_37 +1 known missense c.956 p.Y319C 1.000 pfam_IF,superfamily_Prefoldin pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin - no_errors VIM HGNC ENSG00000026025 39 0 0 21 7 25 CACNB2 0 genome.wustl.edu 37 10 18789768 18789768 + Nonsense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 18789768 18789768 C T SNP CACNB2 ENST00000324631 human ensembl 74_37 +1 known nonsense c.484 p.R162* 0.996 superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su - no_errors CACNB2 HGNC ENSG00000165995 26 0 0 24 6 20 KAT6B 0 genome.wustl.edu 37 10 76789439 76789439 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 76789439 76789439 C T SNP KAT6B ENST00000287239 human ensembl 74_37 +1 known silent c.4857 p.V1619 0.997 NULL pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger - no_errors KAT6B HGNC ENSG00000156650 53 0 0 36 15 29.4118 ZMIZ1 0 genome.wustl.edu 37 10 81052021 81052021 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 81052021 81052021 G A SNP ZMIZ1 ENST00000334512 human ensembl 74_37 +1 known missense c.865 p.A289T 1.000 NULL pfam_Znf_MIZ,pfscan_Znf_MIZ - no_errors ZMIZ1 HGNC ENSG00000108175 97 0 0 63 17 21.25 RRP12 0 genome.wustl.edu 37 10 99126349 99126349 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 10 99126349 99126349 T C SNP RRP12 ENST00000370992 human ensembl 74_37 -1 known missense c.3245 p.D1082G 0.987 NULL pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold - no_errors RRP12 HGNC ENSG00000052749 87 0 0 59 15 20.2703 VSIG2 0 genome.wustl.edu 37 11 124620670 124620670 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 124620670 124620670 C T SNP VSIG2 ENST00000326621 human ensembl 74_37 -1 known missense c.367 p.V123I 0.686 pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom - no_errors VSIG2 HGNC ENSG00000019102 33 0 0 22 5 18.5185 MUC5B 0 genome.wustl.edu 37 11 1263878 1263878 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 1263878 1263878 C T SNP MUC5B ENST00000447027 human ensembl 74_37 +1 known missense c.5777 p.T1926M 0.016 NULL pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C - no_errors MUC5B HGNC ENSG00000117983 149 0 0 93 32 25.6 KCNA4 0 genome.wustl.edu 37 11 30032974 30032974 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 30032974 30032974 T C SNP KCNA4 ENST00000328224 human ensembl 74_37 -1 known missense c.1252 p.T418A 1.000 pfam_Ion_trans_dom,prints_K_chnl pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv - no_errors KCNA4 HGNC ENSG00000182255 46 0 0 26 10 27.7778 MRGPRE 0 genome.wustl.edu 37 11 3249928 3249928 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 3249928 3249928 G A SNP MRGPRE ENST00000389832 human ensembl 74_37 -1 known silent c.102 p.L34 0.029 prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors MRGPRE HGNC ENSG00000184350 58 0 0 37 10 21.2766 ACCSL 0 genome.wustl.edu 37 11 44069816 44069816 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 44069816 44069816 G A SNP ACCSL ENST00000378832 human ensembl 74_37 +1 known missense c.230 p.R77Q 0.005 NULL pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase - no_errors ACCSL HGNC ENSG00000205126 103 0 0 54 22 28.9474 OR4A47 0 genome.wustl.edu 37 11 48510618 48510618 + Missense_Mutation SNP T T G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 48510618 48510618 T G SNP OR4A47 ENST00000446524 human ensembl 74_37 +1 known missense c.274 p.F92V 0.003 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4A47 HGNC ENSG00000237388 65 0 0 29 7 19.4444 UBQLN3 0 genome.wustl.edu 37 11 5528945 5528945 + Missense_Mutation SNP T T G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 5528945 5528945 T G SNP UBQLN3 ENST00000311659 human ensembl 74_37 -1 known missense c.1844 p.H615P 0.998 superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup - no_errors UBQLN3 HGNC ENSG00000175520 53 0 0 27 11 28.9474 OR4D6 0 genome.wustl.edu 37 11 59225150 59225150 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 59225150 59225150 G A SNP OR4D6 ENST00000300127 human ensembl 74_37 +1 known silent c.717 p.T239 0.998 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR4D6 HGNC ENSG00000166884 53 0 0 32 20 38.4615 GNPTAB 0 genome.wustl.edu 37 12 102147160 102147160 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 102147160 102147160 G T SNP GNPTAB ENST00000299314 human ensembl 74_37 -1 known missense c.3592 p.L1198M 1.000 NULL pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom - no_errors GNPTAB HGNC ENSG00000111670 27 0 0 20 3 13.0435 BTBD11 0 genome.wustl.edu 37 12 107712922 107712922 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 107712922 107712922 G A SNP BTBD11 ENST00000280758 human ensembl 74_37 +1 known missense c.205 p.V69I 1.000 NULL pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like - no_errors BTBD11 HGNC ENSG00000151136 9 0 0 7 4 36.3636 WSCD2 0 genome.wustl.edu 37 12 108589694 108589694 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 108589694 108589694 G A SNP WSCD2 ENST00000261400 human ensembl 74_37 +1 known missense c.85 p.A29T 1.000 NULL pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd - no_errors WSCD2 HGNC ENSG00000075035 102 0 0 54 17 23.9437 FICD 0 genome.wustl.edu 37 12 108912824 108912824 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 108912824 108912824 G A SNP FICD ENST00000552695 human ensembl 74_37 +1 known missense c.949 p.G317R 1.000 pfam_Fido,superfamily_Fido pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors FICD HGNC ENSG00000198855 35 0 0 20 5 20 WSB2 0 genome.wustl.edu 37 12 118490136 118490136 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 118490136 118490136 G T SNP WSB2 ENST00000315436 human ensembl 74_37 -1 known missense c.161 p.P54H 1.000 superfamily_WD40_repeat_dom pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WSB2 HGNC ENSG00000176871 50 0 0 29 9 23.6842 METTL20 0 genome.wustl.edu 37 12 31820774 31820774 + Silent SNP A A T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 31820774 31820774 A T SNP METTL20 ENST00000357721 human ensembl 74_37 +1 known silent c.639 p.R213 0.024 NULL pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Nicotinamide_N-MeTfrase-like - no_errors METTL20 HGNC ENSG00000139160 31 0 0 13 5 27.7778 COL2A1 0 genome.wustl.edu 37 12 48371127 48371127 + Silent SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 48371127 48371127 G T SNP COL2A1 ENST00000380518 human ensembl 74_37 -1 known silent c.3249 p.G1083 1.000 NULL pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C - no_errors COL2A1 HGNC ENSG00000139219 43 0 0 41 12 22.6415 NCKAP5L 0 genome.wustl.edu 37 12 50185782 50185782 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 50185782 50185782 G A SNP NCKAP5L ENST00000335999 human ensembl 74_37 -1 known missense c.3845 p.T1282M 0.000 NULL NULL - no_errors NCKAP5L HGNC ENSG00000167566 19 0 0 17 4 19.0476 ERBB3 0 genome.wustl.edu 37 12 56482341 56482341 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 56482341 56482341 G T SNP ERBB3 ENST00000267101 human ensembl 74_37 +1 known missense c.889 p.D297Y 1.000 pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors ERBB3 HGNC ENSG00000065361 120 0 0 93 26 21.8487 CCER1 0 genome.wustl.edu 37 12 91348279 91348279 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 91348279 91348279 C T SNP CCER1 ENST00000358859 human ensembl 74_37 -1 known missense c.241 p.V81M 0.000 NULL NULL - no_errors CCER1 HGNC ENSG00000197651 39 0 0 21 7 25 CLEC2D 0 genome.wustl.edu 37 12 9840550 9840550 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 12 9840550 9840550 C T SNP CLEC2D ENST00000261340 human ensembl 74_37 +1 known silent c.225 p.C75 0.856 pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin - no_errors CLEC2D HGNC ENSG00000069493 40 0 0 29 10 25.641 LPAR6 0 genome.wustl.edu 37 13 48986434 48986434 + Missense_Mutation SNP G G C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 13 48986434 48986434 G C SNP LPAR6 ENST00000345941 human ensembl 74_37 -1 known missense c.126 p.F42L 0.994 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn - no_errors LPAR6 HGNC ENSG00000139679 21 0 0 31 6 16.2162 GPC5 0 genome.wustl.edu 37 13 92345752 92345752 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 13 92345752 92345752 G A SNP GPC5 ENST00000377067 human ensembl 74_37 +1 known missense c.637 p.G213R 0.906 pfam_Glypican pfam_Glypican - no_errors GPC5 HGNC ENSG00000179399 27 0 0 24 6 20 REM2 0 genome.wustl.edu 37 14 23354488 23354488 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 14 23354488 23354488 G T SNP REM2 ENST00000267396 human ensembl 74_37 +1 known missense c.459 p.E153D 0.937 pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase - no_errors REM2 HGNC ENSG00000139890 54 0 0 30 2 6.25 PRKD1 0 genome.wustl.edu 37 14 30135292 30135292 + Missense_Mutation SNP T T G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 14 30135292 30135292 T G SNP PRKD1 ENST00000331968 human ensembl 74_37 -1 known missense c.526 p.K176Q 1.000 pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd - no_errors PRKD1 HGNC ENSG00000184304 62 0 0 41 16 28.0702 UNC13C 0 genome.wustl.edu 37 15 54586259 54586259 + Silent SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 15 54586259 54586259 T C SNP UNC13C ENST00000260323 human ensembl 74_37 +1 known silent c.3985 p.L1329 0.973 superfamily_C2_dom pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom - no_errors UNC13C HGNC ENSG00000137766 61 0 0 44 14 24.1379 HAPLN3 0 genome.wustl.edu 37 15 89424847 89424847 + Silent SNP C C A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 15 89424847 89424847 C A SNP HAPLN3 ENST00000359595 human ensembl 74_37 -1 known silent c.234 p.L78 0.001 pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link - no_errors HAPLN3 HGNC ENSG00000140511 85 0 0 66 4 5.71429 MAPK8IP3 0 genome.wustl.edu 37 16 1817631 1817631 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 16 1817631 1817631 G A SNP MAPK8IP3 ENST00000250894 human ensembl 74_37 +1 known missense c.3301 p.V1101I 0.999 superfamily_WD40_repeat_dom pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom - no_errors MAPK8IP3 HGNC ENSG00000138834 29 0 0 12 10 45.4545 ENSG00000261727 0 genome.wustl.edu 37 16 32095637 32095637 + RNA SNP G G C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 16 32095637 32095637 G C SNP ENSG00000261727 ENST00000566806 human ensembl 74_37 -1 known rna NULL NULL 1.000 - - - no_errors RP11-1166P10.6 Clone_based_vega_gene ENSG00000261727 25 0 0 13 3 18.75 ZNF423 0 genome.wustl.edu 37 16 49671764 49671764 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 16 49671764 49671764 G A SNP ZNF423 ENST00000262383 human ensembl 74_37 -1 known silent c.1299 p.H433 0.993 smart_Znf_C2H2-like pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF423 HGNC ENSG00000102935 69 0 0 42 11 20.7547 CDH1 0 genome.wustl.edu 37 16 68849586 68849586 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 16 68849586 68849586 G A SNP CDH1 ENST00000261769 human ensembl 74_37 +1 known missense c.1489 p.E497K 0.999 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 66 0 0 21 26 55.3191 HYDIN 0 genome.wustl.edu 37 16 70989374 70989374 + Missense_Mutation SNP C C G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 16 70989374 70989374 C G SNP HYDIN ENST00000393567 human ensembl 74_37 -1 putative missense c.6220 p.A2074P 0.999 superfamily_P-loop_NTPase superfamily_P-loop_NTPase,superfamily_PapD-like - no_errors HYDIN HGNC ENSG00000157423 28 0 0 19 11 36.6667 DNAH9 0 genome.wustl.edu 37 17 11666890 11666890 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 17 11666890 11666890 G T SNP DNAH9 ENST00000262442 human ensembl 74_37 +1 known missense c.7129 p.A2377S 1.000 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase - no_errors DNAH9 HGNC ENSG00000007174 22 0 0 12 9 42.8571 CCT6B 0 genome.wustl.edu 37 17 33267619 33267619 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 17 33267619 33267619 C T SNP CCT6B ENST00000314144 human ensembl 74_37 -1 known missense c.907 p.D303N 1.000 pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_zeta pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta - no_errors CCT6B HGNC ENSG00000132141 21 0 0 15 3 16.6667 PLD2 0 genome.wustl.edu 37 17 4720037 4720037 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 17 4720037 4720037 C T SNP PLD2 ENST00000263088 human ensembl 74_37 +1 known silent c.1578 p.F526 1.000 pirsf_PLipase_D_euk pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase - no_errors PLD2 HGNC ENSG00000129219 108 0 0 79 27 25.4717 SLC39A11 0 genome.wustl.edu 37 17 70732808 70732808 + Missense_Mutation SNP C C A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 17 70732808 70732808 C A SNP SLC39A11 ENST00000542342 human ensembl 74_37 -1 known missense c.673 p.A225S 0.983 pfam_ZIP pfam_ZIP - no_errors SLC39A11 HGNC ENSG00000133195 79 0 0 45 5 10 MIB1 0 genome.wustl.edu 37 18 19427012 19427012 + Silent SNP T T A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 18 19427012 19427012 T A SNP MIB1 ENST00000261537 human ensembl 74_37 +1 known silent c.2319 p.G773 0.889 superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt - no_errors MIB1 HGNC ENSG00000101752 24 0 0 25 5 16.6667 CABYR 0 genome.wustl.edu 37 18 21739566 21739566 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 18 21739566 21739566 C T SNP CABYR ENST00000399496 human ensembl 74_37 +1 known silent c.672 p.T224 1.000 NULL pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b - no_errors CABYR HGNC ENSG00000154040 44 0 0 29 11 27.5 ELP2 0 genome.wustl.edu 37 18 33747008 33747008 + RNA SNP C C G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 18 33747008 33747008 C G SNP ELP2 ENST00000545302 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors ELP2 HGNC ENSG00000134759 46 0 0 19 14 42.4242 DCC 0 genome.wustl.edu 37 18 50912418 50912418 + Missense_Mutation SNP A A C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 18 50912418 50912418 A C SNP DCC ENST00000442544 human ensembl 74_37 +1 known missense c.2365 p.S789R 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors DCC HGNC ENSG00000187323 20 0 0 10 5 33.3333 LAMA1 0 genome.wustl.edu 37 18 7117677 7117677 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 18 7117677 7117677 C T SNP LAMA1 ENST00000389658 human ensembl 74_37 -1 known missense c.43 p.A15T 0.008 NULL pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N - no_errors LAMA1 HGNC ENSG00000101680 17 0 0 25 6 19.3548 NFIX 0 genome.wustl.edu 37 19 13192536 13192536 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 13192536 13192536 C T SNP NFIX ENST00000585575 human ensembl 74_37 +1 known missense c.1097 p.T366M 1.000 pfam_CTF/NFI pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom - no_errors NFIX HGNC ENSG00000008441 45 0 0 22 7 24.1379 ATP13A1 0 genome.wustl.edu 37 19 19756753 19756753 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 19756753 19756753 C T SNP ATP13A1 ENST00000357324 human ensembl 74_37 -1 known missense c.3290 p.S1097N 1.000 tigrfam_ATPase_P-typ_Cation_typ_V pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP13A1 HGNC ENSG00000105726 166 0 0 97 31 24.2188 ZNF676 0 genome.wustl.edu 37 19 22364350 22364350 + Nonsense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 22364350 22364350 G A SNP ZNF676 ENST00000397121 human ensembl 74_37 -1 known nonsense c.169 p.Q57* 0.077 NULL pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF676 HGNC ENSG00000196109 17 0 0 8 3 27.2727 ZNF568 0 genome.wustl.edu 37 19 37441098 37441098 + Missense_Mutation SNP A A C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 37441098 37441098 A C SNP ZNF568 ENST00000333987 human ensembl 74_37 +1 known missense c.1043 p.N348T 0.001 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF568 HGNC ENSG00000198453 33 0 0 28 4 12.5 THEG 0 genome.wustl.edu 37 19 375955 375955 + Nonsense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 375955 375955 G A SNP THEG ENST00000342640 human ensembl 74_37 -1 known nonsense c.16 p.R6* 0.000 NULL smart_THEG - no_errors THEG HGNC ENSG00000105549 33 0 0 25 12 32.4324 LGALS7B 0 genome.wustl.edu 37 19 39281495 39281495 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 39281495 39281495 G A SNP LGALS7B ENST00000314980 human ensembl 74_37 +1 known missense c.262 p.E88K 0.992 pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD - no_errors LGALS7B HGNC ENSG00000178934 12 0 0 7 4 36.3636 ATP1A3 0 genome.wustl.edu 37 19 42489213 42489213 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 42489213 42489213 G T SNP ATP1A3 ENST00000302102 human ensembl 74_37 -1 known missense c.850 p.L284I 1.000 pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase - no_errors ATP1A3 HGNC ENSG00000105409 21 0 0 14 4 22.2222 RSPH6A 0 genome.wustl.edu 37 19 46307639 46307639 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 46307639 46307639 G A SNP RSPH6A ENST00000221538 human ensembl 74_37 -1 known silent c.1524 p.D508 0.901 pfam_Radial_spoke pfam_Radial_spoke - no_errors RSPH6A HGNC ENSG00000104941 43 0 0 21 10 32.2581 ZNF665 0 genome.wustl.edu 37 19 53686190 53686190 + RNA SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 53686190 53686190 G A SNP ZNF665 ENST00000596373 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors ZNF665 HGNC ENSG00000197497 49 0 0 29 10 25.641 MUC16 0 genome.wustl.edu 37 19 9070919 9070919 + Silent SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 19 9070919 9070919 A G SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known silent c.16527 p.S5509 0.000 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom - no_errors MUC16 HGNC ENSG00000181143 31 0 0 24 5 17.2414 TTN 0 genome.wustl.edu 37 2 179605766 179605766 + Missense_Mutation SNP A A T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 2 179605766 179605766 A T SNP TTN ENST00000342175 human ensembl 74_37 -1 known missense c.11681 p.L3894H 0.004 superfamily_RNaseH-like_dom pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 89 0 0 67 16 19.2771 SLC11A1 0 genome.wustl.edu 37 2 219251895 219251895 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 2 219251895 219251895 G T SNP SLC11A1 ENST00000233202 human ensembl 74_37 +1 known missense c.513 p.W171C 1.000 pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like - no_errors SLC11A1 HGNC ENSG00000018280 63 0 0 40 10 20 FAM228A 0 genome.wustl.edu 37 2 24413383 24413383 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 2 24413383 24413383 G T SNP FAM228A ENST00000295150 human ensembl 74_37 +1 known missense c.504 p.K168N 0.157 NULL NULL - no_errors FAM228A HGNC ENSG00000186453 48 0 0 29 2 6.45161 FNDC4 0 genome.wustl.edu 37 2 27717235 27717235 + Missense_Mutation SNP A A C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 2 27717235 27717235 A C SNP FNDC4 ENST00000264703 human ensembl 74_37 -1 known missense c.232 p.Y78D 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors FNDC4 HGNC ENSG00000115226 29 0 0 11 5 31.25 KCMF1 0 genome.wustl.edu 37 2 85276556 85276556 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 2 85276556 85276556 C T SNP KCMF1 ENST00000409785 human ensembl 74_37 +1 known silent c.669 p.S223 1.000 pfam_Di19_Zn_binding pfam_Znf_ZZ,pfam_Di19_Zn_binding,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2 - no_errors KCMF1 HGNC ENSG00000176407 44 0 0 29 9 23.6842 BPIFB3 0 genome.wustl.edu 37 20 31652281 31652281 + Missense_Mutation SNP C C A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 20 31652281 31652281 C A SNP BPIFB3 ENST00000375494 human ensembl 74_37 +1 known missense c.671 p.A224D 0.979 superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C - no_errors BPIFB3 HGNC ENSG00000186190 45 0 0 27 2 6.89655 SYCP2 0 genome.wustl.edu 37 20 58440688 58440688 + Silent SNP A A C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 20 58440688 58440688 A C SNP SYCP2 ENST00000357552 human ensembl 74_37 -1 known silent c.4398 p.T1466 0.004 NULL NULL - no_errors SYCP2 HGNC ENSG00000196074 28 0 0 20 7 25.9259 BAGE2 0 genome.wustl.edu 37 21 11098713 11098713 + RNA SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 21 11098713 11098713 G A SNP BAGE2 ENST00000470054 human ensembl 74_37 -1 known rna NULL NULL 0.021 - - - no_errors BAGE2 HGNC ENSG00000187172 171 0 0 114 16 12.3077 SAMSN1 0 genome.wustl.edu 37 21 15872912 15872912 + Nonsense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 21 15872912 15872912 G A SNP SAMSN1 ENST00000400566 human ensembl 74_37 -1 known nonsense c.706 p.R236* 0.131 superfamily_SAM/pointed,superfamily_SH3_domain pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM - no_errors SAMSN1 HGNC ENSG00000155307 32 0 0 28 7 20 KRTAP10-10 0 genome.wustl.edu 37 21 46058077 46058077 + Missense_Mutation SNP A A T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 21 46058077 46058077 A T SNP KRTAP10-10 ENST00000380095 human ensembl 74_37 +1 known missense c.743 p.K248M 0.142 NULL NULL - no_errors KRTAP10-10 HGNC ENSG00000221859 65 0 0 39 7 15.2174 COL6A2 0 genome.wustl.edu 37 21 47539015 47539015 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 21 47539015 47539015 C T SNP COL6A2 ENST00000300527 human ensembl 74_37 +1 known silent c.1251 p.R417 0.014 pfam_Collagen pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A - no_errors COL6A2 HGNC ENSG00000142173 21 0 0 7 5 41.6667 GRAMD1C 0 genome.wustl.edu 37 3 113652378 113652378 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 113652378 113652378 G A SNP GRAMD1C ENST00000358160 human ensembl 74_37 +1 known silent c.1230 p.R410 0.971 NULL pfam_GRAM,smart_GRAM - no_errors GRAMD1C HGNC ENSG00000178075 54 0 0 29 9 23.6842 ZNF80 0 genome.wustl.edu 37 3 113955522 113955522 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 113955522 113955522 C T SNP ZNF80 ENST00000308095 human ensembl 74_37 -1 known missense c.400 p.E134K 0.003 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF80 HGNC ENSG00000174255 34 0 0 24 13 35.1351 MYLK 0 genome.wustl.edu 37 3 123376108 123376108 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 123376108 123376108 G A SNP MYLK ENST00000360304 human ensembl 74_37 -1 known missense c.4153 p.R1385C 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors MYLK HGNC ENSG00000065534 48 0 0 28 6 17.6471 CHST2 0 genome.wustl.edu 37 3 142840282 142840282 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 142840282 142840282 C T SNP CHST2 ENST00000309575 human ensembl 74_37 +1 known silent c.624 p.D208 1.000 pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase - no_errors CHST2 HGNC ENSG00000175040 74 0 0 51 13 20.3125 ITGA9 0 genome.wustl.edu 37 3 37555268 37555268 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 37555268 37555268 C T SNP ITGA9 ENST00000264741 human ensembl 74_37 +1 known silent c.912 p.F304 1.000 pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha - no_errors ITGA9 HGNC ENSG00000144668 32 0 0 15 11 42.3077 SCN5A 0 genome.wustl.edu 37 3 38640419 38640419 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 38640419 38640419 G A SNP SCN5A ENST00000333535 human ensembl 74_37 -1 known silent c.2013 p.S671 0.812 NULL pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu - no_errors SCN5A HGNC ENSG00000183873 64 0 0 58 14 19.4444 RHOA 0 genome.wustl.edu 37 3 49412905 49412905 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 49412905 49412905 C T SNP RHOA ENST00000418115 human ensembl 74_37 -1 known missense c.118 p.E40K 1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors RHOA HGNC ENSG00000067560 52 0 0 31 15 32.6087 CACNA2D3 0 genome.wustl.edu 37 3 54604065 54604065 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 54604065 54604065 C T SNP CACNA2D3 ENST00000288197 human ensembl 74_37 +1 known silent c.822 p.I274 0.341 pfam_VWF_A,smart_VWF_A,pfscan_VWF_A pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A - no_errors CACNA2D3 HGNC ENSG00000157445 57 0 0 36 18 33.3333 ROBO1 0 genome.wustl.edu 37 3 78684982 78684982 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 78684982 78684982 T C SNP ROBO1 ENST00000464233 human ensembl 74_37 -1 known missense c.3314 p.Q1105R 1.000 NULL pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom - no_errors ROBO1 HGNC ENSG00000169855 42 0 0 28 9 24.3243 EPHA3 0 genome.wustl.edu 37 3 89528554 89528554 + Missense_Mutation SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 3 89528554 89528554 A G SNP EPHA3 ENST00000336596 human ensembl 74_37 +1 known missense c.2854 p.K952E 1.000 pirsf_Tyr_kinase_ephrin_rcpt,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom - no_errors EPHA3 HGNC ENSG00000044524 18 0 0 6 3 33.3333 ADAD1 0 genome.wustl.edu 37 4 123336638 123336638 + Missense_Mutation SNP C C A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 123336638 123336638 C A SNP ADAD1 ENST00000296513 human ensembl 74_37 +1 known missense c.1354 p.P452T 1.000 pfam_A_deamin,smart_A_deamin,pfscan_A_deamin pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin - no_errors ADAD1 HGNC ENSG00000164113 73 0 0 41 13 24.0741 FAT4 0 genome.wustl.edu 37 4 126238415 126238415 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 126238415 126238415 G A SNP FAT4 ENST00000394329 human ensembl 74_37 +1 known silent c.849 p.A283 0.622 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT4 HGNC ENSG00000196159 25 0 0 24 14 36.8421 FAT4 0 genome.wustl.edu 37 4 126370752 126370752 + Missense_Mutation SNP T T G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 126370752 126370752 T G SNP FAT4 ENST00000394329 human ensembl 74_37 +1 known missense c.8581 p.F2861V 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT4 HGNC ENSG00000196159 63 0 0 34 3 8.10811 DCHS2 0 genome.wustl.edu 37 4 155157788 155157788 + Silent SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 155157788 155157788 G T SNP DCHS2 ENST00000357232 human ensembl 74_37 -1 known silent c.6651 p.T2217 0.048 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors DCHS2 HGNC ENSG00000197410 33 0 0 19 4 17.3913 SAP30 0 genome.wustl.edu 37 4 174292228 174292228 + RNA SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 174292228 174292228 G A SNP SAP30 ENST00000504618 human ensembl 74_37 +1 putative rna NULL NULL 0.000 - - - no_errors SAP30 HGNC ENSG00000164105 23 0 0 7 5 41.6667 DHX15 0 genome.wustl.edu 37 4 24558017 24558017 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 24558017 24558017 T C SNP DHX15 ENST00000336812 human ensembl 74_37 -1 known missense c.718 p.M240V 1.000 pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors DHX15 HGNC ENSG00000109606 46 0 0 24 7 22.5806 TLR10 0 genome.wustl.edu 37 4 38777160 38777160 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 38777160 38777160 C T SNP TLR10 ENST00000308973 human ensembl 74_37 -1 known missense c.52 p.E18K 0.000 pirsf_Toll-like_receptor pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom - no_errors TLR10 HGNC ENSG00000174123 37 0 0 17 3 15 ADAMTS3 0 genome.wustl.edu 37 4 73156747 73156747 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 73156747 73156747 T C SNP ADAMTS3 ENST00000286657 human ensembl 74_37 -1 known missense c.2756 p.K919R 1.000 pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS3 HGNC ENSG00000156140 23 0 0 18 4 18.1818 ANXA3 0 genome.wustl.edu 37 4 79500235 79500235 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 79500235 79500235 G A SNP ANXA3 ENST00000264908 human ensembl 74_37 +1 known missense c.158 p.R53Q 0.995 pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIII - no_errors ANXA3 HGNC ENSG00000138772 28 0 0 11 5 31.25 WDFY3 0 genome.wustl.edu 37 4 85661555 85661555 + Silent SNP T T A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 85661555 85661555 T A SNP WDFY3 ENST00000295888 human ensembl 74_37 -1 known silent c.6249 p.S2083 0.501 NULL pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDFY3 HGNC ENSG00000163625 35 0 0 25 5 16.6667 PTPN13 0 genome.wustl.edu 37 4 87643423 87643423 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 87643423 87643423 C T SNP PTPN13 ENST00000436978 human ensembl 74_37 +1 known missense c.1444 p.R482W 1.000 pirsf_Tyr_Pase_non-rcpt_typ-13 pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPN13 HGNC ENSG00000163629 35 0 0 34 8 19.0476 AQPEP 0 genome.wustl.edu 37 5 115298413 115298413 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 115298413 115298413 C T SNP AQPEP ENST00000357872 human ensembl 74_37 +1 known silent c.99 p.L33 0.097 NULL pfam_Peptidase_M1_N,prints_Peptidase_M1_N - no_errors AQPEP Uniprot_gn ENSG00000172901 19 0 0 23 6 20.6897 PCDHA5 0 genome.wustl.edu 37 5 140203412 140203412 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 140203412 140203412 C T SNP PCDHA5 ENST00000529859 human ensembl 74_37 +1 known silent c.2052 p.G684 0.000 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA5 HGNC ENSG00000204965 78 0 0 46 13 22.0339 PCDHA12 0 genome.wustl.edu 37 5 140256720 140256720 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 140256720 140256720 G A SNP PCDHA12 ENST00000398631 human ensembl 74_37 +1 known missense c.1663 p.V555M 0.994 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA12 HGNC ENSG00000251664 152 0 0 85 40 32 PCDHB8 0 genome.wustl.edu 37 5 140558894 140558894 + Silent SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 140558894 140558894 T C SNP PCDHB8 ENST00000239444 human ensembl 74_37 +1 known silent c.1279 p.L427 0.307 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB8 HGNC ENSG00000120322 236 0 0 197 23 10.4545 PCDHB11 0 genome.wustl.edu 37 5 140580096 140580096 + Missense_Mutation SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 140580096 140580096 A G SNP PCDHB11 ENST00000354757 human ensembl 74_37 +1 known missense c.749 p.K250R 0.000 pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHB11 HGNC ENSG00000197479 99 0 0 70 13 15.6627 PCDHGB6 0 genome.wustl.edu 37 5 140789552 140789552 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 140789552 140789552 G A SNP PCDHGB6 ENST00000520790 human ensembl 74_37 +1 known missense c.1783 p.D595N 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGB6 HGNC ENSG00000253305 32 0 0 24 5 17.2414 FAM105B 0 genome.wustl.edu 37 5 14681649 14681649 + Missense_Mutation SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 14681649 14681649 C T SNP FAM105B ENST00000284274 human ensembl 74_37 +1 known missense c.401 p.T134M 1.000 prints_FAM105 prints_FAM105,prints_FAM105B,prints_FAM105A - no_errors FAM105B HGNC ENSG00000154124 42 0 0 19 12 38.7097 RNF145 0 genome.wustl.edu 37 5 158630531 158630531 + Missense_Mutation SNP C C G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 158630531 158630531 C G SNP RNF145 ENST00000518802 human ensembl 74_37 -1 known missense c.185 p.S62T 1.000 NULL pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF145 HGNC ENSG00000145860 66 0 0 20 17 45.9459 RGS14 0 genome.wustl.edu 37 5 176797932 176797932 + Missense_Mutation SNP T T A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 176797932 176797932 T A SNP RGS14 ENST00000408923 human ensembl 74_37 +1 known missense c.1154 p.V385E 0.509 pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom - no_errors RGS14 HGNC ENSG00000169220 31 0 0 14 4 22.2222 OR2Y1 0 genome.wustl.edu 37 5 180166621 180166621 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 180166621 180166621 G A SNP OR2Y1 ENST00000307832 human ensembl 74_37 -1 known silent c.438 p.I146 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR2Y1 HGNC ENSG00000174339 40 0 0 13 6 31.5789 MEF2C 0 genome.wustl.edu 37 5 88018596 88018596 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 88018596 88018596 G A SNP MEF2C ENST00000437473 human ensembl 74_37 -1 known missense c.1247 p.A416V 1.000 NULL pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox - no_errors MEF2C HGNC ENSG00000081189 60 0 0 33 12 26.6667 GRIK2 0 genome.wustl.edu 37 6 102074313 102074313 + Silent SNP A A G TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 6 102074313 102074313 A G SNP GRIK2 ENST00000421544 human ensembl 74_37 +1 known silent c.342 p.S114 0.896 pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIK2 HGNC ENSG00000164418 96 0 0 91 5 5.20833 KIAA1919 0 genome.wustl.edu 37 6 111587266 111587266 + Silent SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 6 111587266 111587266 T C SNP KIAA1919 ENST00000368847 human ensembl 74_37 +1 known silent c.501 p.D167 0.000 pfam_MFS,superfamily_MFS_dom_general_subst_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt - no_errors KIAA1919 HGNC ENSG00000173214 11 0 0 7 5 41.6667 HLA-DRB5 0 genome.wustl.edu 37 6 32497910 32497910 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 6 32497910 32497910 T C SNP HLA-DRB5 ENST00000374975 human ensembl 74_37 -1 known missense c.92 p.D31G 0.003 superfamily_MHC_I/II-like_Ag-recog pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom - no_errors HLA-DRB5 HGNC ENSG00000198502 133 1 0.746269 75 9 10.7143 UBR2 0 genome.wustl.edu 37 6 42625808 42625808 + Silent SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 6 42625808 42625808 G A SNP UBR2 ENST00000372899 human ensembl 74_37 +1 known silent c.2919 p.L973 0.989 NULL pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin - no_errors UBR2 HGNC ENSG00000024048 117 1 0.847458 47 61 56.4815 RIMS1 0 genome.wustl.edu 37 6 73110292 73110292 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 6 73110292 73110292 T C SNP RIMS1 ENST00000521978 human ensembl 74_37 +1 known missense c.4955 p.V1652A 1.000 superfamily_C2_dom,smart_C2_dom pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel - no_errors RIMS1 HGNC ENSG00000079841 37 0 0 36 2 5.26316 DGKI 0 genome.wustl.edu 37 7 137237196 137237196 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 7 137237196 137237196 G T SNP DGKI ENST00000288490 human ensembl 74_37 -1 known missense c.2066 p.A689D 1.000 NULL pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors DGKI HGNC ENSG00000157680 64 0 0 38 10 20.8333 PON2 0 genome.wustl.edu 37 7 95034618 95034618 + RNA SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 7 95034618 95034618 G A SNP PON2 ENST00000483292 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors PON2 HGNC ENSG00000105854 13 0 0 11 7 38.8889 RIMS2 0 genome.wustl.edu 37 8 104898169 104898169 + Silent SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 8 104898169 104898169 T C SNP RIMS2 ENST00000406091 human ensembl 74_37 +1 known silent c.1342 p.L448 0.117 NULL pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel - no_errors RIMS2 HGNC ENSG00000176406 58 0 0 37 4 9.7561 CNBD1 0 genome.wustl.edu 37 8 88365898 88365898 + Missense_Mutation SNP T T A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 8 88365898 88365898 T A SNP CNBD1 ENST00000518476 human ensembl 74_37 +1 known missense c.1187 p.L396H 0.229 pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom - no_errors CNBD1 HGNC ENSG00000176571 28 0 0 18 4 18.1818 DCAF4L2 0 genome.wustl.edu 37 8 88885868 88885868 + Missense_Mutation SNP T T C TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 8 88885868 88885868 T C SNP DCAF4L2 ENST00000319675 human ensembl 74_37 -1 known missense c.332 p.E111G 0.000 superfamily_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DCAF4L2 HGNC ENSG00000176566 66 0 0 50 9 15.2542 AMBP 0 genome.wustl.edu 37 9 116837249 116837249 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 9 116837249 116837249 G T SNP AMBP ENST00000265132 human ensembl 74_37 -1 known missense c.328 p.H110N 0.937 pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like pfam_Prot_inh_Kunz-m,pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_A1-microglobln,prints_PstgldnD_synth,prints_Prot_inh_Kunz-m,prints_Lipocalin - no_errors AMBP HGNC ENSG00000106927 32 0 0 22 2 8.33333 LURAP1L 0 genome.wustl.edu 37 9 12821406 12821406 + Missense_Mutation SNP G G A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 9 12821406 12821406 G A SNP LURAP1L ENST00000319264 human ensembl 74_37 +1 known missense c.334 p.V112I 0.997 NULL NULL - no_errors LURAP1L HGNC ENSG00000153714 76 0 0 51 19 27.1429 PCSK5 0 genome.wustl.edu 37 9 78804565 78804565 + Missense_Mutation SNP G G T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 9 78804565 78804565 G T SNP PCSK5 ENST00000545128 human ensembl 74_37 +1 known missense c.2529 p.L843F 1.000 superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_EG-like_dom pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel - no_errors PCSK5 HGNC ENSG00000099139 18 0 0 22 2 8.33333 PLXNB3 0 genome.wustl.edu 37 X 153037379 153037379 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 X 153037379 153037379 C T SNP PLXNB3 ENST00000538966 human ensembl 74_37 +1 known silent c.2647 p.L883 1.000 pfam_IPT,superfamily_Ig_E-set,smart_IPT pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom - no_errors PLXNB3 HGNC ENSG00000198753 8 0 0 5 7 58.3333 WDR13 0 genome.wustl.edu 37 X 48457987 48457987 + Silent SNP C C T TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 X 48457987 48457987 C T SNP WDR13 ENST00000218056 human ensembl 74_37 +1 known silent c.405 p.S135 0.960 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR13 HGNC ENSG00000101940 36 0 0 24 6 20 KIAA0907 0 genome.wustl.edu 37 1 155886422 155886423 + Frame_Shift_Del DEL CT CT - TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 CT CT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 1 155886422 155886423 CT - DEL KIAA0907 ENST00000368321 human ensembl 74_37 -1 known frame_shift_del c.1547_1546 p.R516fs 1.000:1.000 NULL NULL - no_errors KIAA0907 HGNC ENSG00000132680 72 0 0 58 6 9.375 HIPK3 0 genome.wustl.edu 37 11 33358693 33358693 + Frame_Shift_Del DEL T T - TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 11 33358693 33358693 T - DEL HIPK3 ENST00000303296 human ensembl 74_37 +1 known frame_shift_del c.1294 p.C434fs 1.000 pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom - no_errors HIPK3 HGNC ENSG00000110422 12 0 0 11 2 15.3846 EBPL 0 genome.wustl.edu 37 13 50235208 50235209 + Frame_Shift_Ins INS - - A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 13 50235208 50235209 - A INS EBPL ENST00000242827 human ensembl 74_37 -1 known frame_shift_ins c.517_516 p.N172fs 1.000:0.997 pfam_EBP pfam_EBP - no_errors EBPL HGNC ENSG00000123179 30 0 0 23 4 14.8148 PSMA6 0 genome.wustl.edu 37 14 35782215 35782216 + Frame_Shift_Ins INS - - A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 14 35782215 35782216 - A INS PSMA6 ENST00000261479 human ensembl 74_37 +1 known frame_shift_ins c.538_539 p.V183fs 1.000:1.000 pfam_Proteasome_sua/b pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N - no_errors PSMA6 HGNC ENSG00000100902 86 0 0 82 5 5.74713 ENSG00000257275 0 genome.wustl.edu 37 14 96178149 96178150 + RNA DEL AG AG - TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 AG AG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 14 96178149 96178150 AG - DEL ENSG00000257275 ENST00000547644 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.001 - - - no_errors RP11-164H13.1 Clone_based_vega_gene ENSG00000257275 13 0 0 11 4 26.6667 NIPA2 0 genome.wustl.edu 37 15 23006451 23006454 + Frame_Shift_Del DEL CACT CACT - TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 CACT CACT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 15 23006451 23006454 CACT - DEL NIPA2 ENST00000337451 human ensembl 74_37 -1 known frame_shift_del c.853_850 p.S284fs 1.000:1.000:1.000:1.000 pfam_Mg_trans_NIPA pfam_Mg_trans_NIPA,pfam_DMT - no_errors NIPA2 HGNC ENSG00000140157 43 0 0 28 7 20 RNF43 0 genome.wustl.edu 37 17 56492797 56492798 + Frame_Shift_Ins INS - - A TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 17 56492797 56492798 - A INS RNF43 ENST00000407977 human ensembl 74_37 -1 known frame_shift_ins c.142_141 p.I47fs 1.000:1.000 NULL pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF43 HGNC ENSG00000108375 53 0 0 25 11 30.5556 SLC2A9 0 genome.wustl.edu 37 4 10027510 10027510 + RNA DEL A A - TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 4 10027510 10027510 A - DEL SLC2A9 ENST00000509214 human ensembl 74_37 -1 known rna NULL NULL 0.000 - - - no_errors SLC2A9 HGNC ENSG00000109667 25 0 0 19 4 17.3913 ITK 0 genome.wustl.edu 37 5 156679702 156679702 + RNA DEL C C - TCGA-BR-A4QM-01A-12D-A25D-08 TCGA-BR-A4QM-10A-01D-A25E-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq c2efeb73-85c8-4dce-bdd0-9d7010bf0a38 331ffab8-27ab-470a-886f-91f7264b8454 5 156679702 156679702 C - DEL ITK ENST00000519749 human ensembl 74_37 +1 known rna NULL NULL 0.002 - - - no_errors ITK HGNC ENSG00000113263 47 0 0 25 7 21.875