Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier title header normal_ref_reads normal_var_reads normal_VAF tumor_ref_reads tumor_var_reads tumor_VAF CAPN2 0 genome.wustl.edu 37 1 223943324 223943324 + Missense_Mutation SNP G G A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 1 223943324 223943324 G A SNP CAPN2 ENST00000295006 human ensembl 74_37 +1 known missense c.1278 p.M426I 1.000 pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease - no_errors CAPN2 HGNC ENSG00000162909 32 0 0 21 3 12.5 ARMC4 0 genome.wustl.edu 37 10 28250610 28250610 + Missense_Mutation SNP C C A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 10 28250610 28250610 C A SNP ARMC4 ENST00000305242 human ensembl 74_37 -1 known missense c.1273 p.D425Y 1.000 NULL pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo - no_errors ARMC4 HGNC ENSG00000169126 22 0 0 11 5 31.25 ARMC4 0 genome.wustl.edu 37 10 28250635 28250635 + Silent SNP A A C TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 10 28250635 28250635 A C SNP ARMC4 ENST00000305242 human ensembl 74_37 -1 known silent c.1248 p.A416 0.002 NULL pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo - no_errors ARMC4 HGNC ENSG00000169126 21 0 0 17 4 19.0476 UNC5B 0 genome.wustl.edu 37 10 73057762 73057762 + Missense_Mutation SNP C C T TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 10 73057762 73057762 C T SNP UNC5B ENST00000335350 human ensembl 74_37 +1 known missense c.2587 p.R863C 1.000 superfamily_DEATH-like_dom,smart_Death_domain pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom - no_errors UNC5B HGNC ENSG00000107731 41 0 0 40 4 9.09091 SLC28A2 0 genome.wustl.edu 37 15 45564491 45564491 + Splice_Site SNP A A G TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 15 45564491 45564491 A G SNP SLC28A2 ENST00000347644 human ensembl 74_37 +1 known splice_site c.1649-2 e15-2 1.000 - - - no_errors SLC28A2 HGNC ENSG00000137860 49 0 0 22 3 12 TNRC6A 0 genome.wustl.edu 37 16 24834270 24834270 + Missense_Mutation SNP G G A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 16 24834270 24834270 G A SNP TNRC6A ENST00000395799 human ensembl 74_37 +1 known missense c.5449 p.G1817R 1.000 NULL pfam_Argonaute_hook_dom,superfamily_UBA-like - no_errors TNRC6A HGNC ENSG00000090905 53 0 0 48 4 7.69231 CDH1 0 genome.wustl.edu 37 16 68844182 68844182 + Missense_Mutation SNP A A G TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 16 68844182 68844182 A G SNP CDH1 ENST00000261769 human ensembl 74_37 +1 known missense c.770 p.D257G 1.000 superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 46 0 0 48 6 11.1111 NTSR2 0 genome.wustl.edu 37 2 11802136 11802136 + Silent SNP G G A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 2 11802136 11802136 G A SNP NTSR2 ENST00000306928 human ensembl 74_37 -1 known silent c.855 p.D285 0.000 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT2_rcpt pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT2_rcpt,prints_NT_rcpt,prints_GPCR_Rhodpsn - no_errors NTSR2 HGNC ENSG00000169006 88 0 0 64 5 7.24638 SH3BP4 0 genome.wustl.edu 37 2 235951626 235951626 + Nonsense_Mutation SNP C C A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 2 235951626 235951626 C A SNP SH3BP4 ENST00000344528 human ensembl 74_37 +1 known nonsense c.2213 p.S738* 0.022 NULL pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain - no_errors SH3BP4 HGNC ENSG00000130147 44 0 0 40 3 6.97674 STAB1 0 genome.wustl.edu 37 3 52554531 52554531 + Missense_Mutation SNP G G T TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 3 52554531 52554531 G T SNP STAB1 ENST00000321725 human ensembl 74_37 +1 known missense c.5615 p.R1872L 1.000 NULL pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link - no_errors STAB1 HGNC ENSG00000010327 22 0 0 26 2 7.14286 SLU7 0 genome.wustl.edu 37 5 159830390 159830390 + Missense_Mutation SNP T T A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 5 159830390 159830390 T A SNP SLU7 ENST00000297151 human ensembl 74_37 -1 known missense c.1663 p.M555L 0.106 NULL pfam_Slu7,superfamily_Znf_CCHC - no_errors SLU7 HGNC ENSG00000164609 117 0 0 103 6 5.50459 GTF2IRD2P1 0 genome.wustl.edu 37 7 72658179 72658179 + RNA SNP T T C TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 7 72658179 72658179 T C SNP GTF2IRD2P1 ENST00000425256 human ensembl 74_37 -1 known rna NULL NULL 0.173 - - - no_errors GTF2IRD2P1 HGNC ENSG00000214544 26 0 0 34 3 8.10811 TUBBP5 0 genome.wustl.edu 37 9 141070116 141070116 + RNA SNP G G A TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 9 141070116 141070116 G A SNP TUBBP5 ENST00000290377 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors TUBBP5 HGNC ENSG00000159247 57 0 0 48 4 7.69231 ROM1 0 genome.wustl.edu 37 11 62381084 62381084 + Frame_Shift_Del DEL G G - TCGA-FP-8210-01A-11D-2340-08 TCGA-FP-8210-11A-01D-2340-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 684ff3b4-a44b-46c5-8739-8dfcf614e534 5e6337c8-d4d5-48d8-9311-f286f2126e4e 11 62381084 62381084 G - DEL ROM1 ENST00000278833 human ensembl 74_37 +1 known frame_shift_del c.331 p.L114fs 0.023 pfam_Tetraspanin/Peripherin,prints_Peripherin/rom-1 pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1 - no_errors ROM1 HGNC ENSG00000149489 25 0 0 24 2 7.69231