Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PIK3CD 5293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 9779982 9779982 + Missense_Mutation SNP T T C novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_005026 exon10 c.T1246C p.C416R CAGGACTGCCCCA 149 33 0.22 155 0 0 149 43 0.29 PTPRF 5792 mdanderson.org 37 1 44057118 44057118 + Silent SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_002840 exon9 c.G1425T p.V475V GACCGTGGGCAGC 24 2 0.08 28 0 0 116 0 0.00 . 0 bcgsc.ca 37 1 160864796 160864796 + RNA SNP C C T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . CACGCTCGACTTC 105 44 0.42 70 0 0 17 0 0.00 ARHGAP30 257106 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 161018593 161018595 + In_Frame_Del DEL CTC CTC - novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 CTC CTC Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . ARHGAP30 NM_001025598 exon12 c.2217_2219del p.739_740del ACTCATCTCCTCC 285 65 0.23 202 0 0 105 106 0 0.00 TTC13 79573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 231075188 231075188 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_024525 exon8 c.C844A p.Q282K TAGGCTGGTTTTT 55 7 0.13 55 0 0 1 0 0.00 MUC2 4583 hgsc.bcm.edu 37 11 1093324 1093324 + Missense_Mutation SNP G G A rs201143282 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.G5143A p.G1715S CCCACCGGCACAC 41 4 0.10 33 2 0.0606060606 0 2 0 0 KRTAP5-4 387267 hgsc.bcm.edu 37 11 1643254 1643254 + Missense_Mutation SNP A A G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 KRTAP5-4,NS,carcinoma,+2,6 KRTAP5-4 NM_001012709 exon1 c.T70C p.C24R AGCCACAGCCCCC 134 9 0.07 103 1 0.0097087379 2 6 0 0 ABTB2 25841 mdanderson.org 37 11 34184247 34184247 + Silent SNP G G A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_145804 exon10 c.C2094T p.S698S GCCCTGGCTCGAC 45 3 0.07 41 0 0 9 0 0.00 OR4A16 81327 hgsc.bcm.edu 37 11 55110715 55110715 + Silent SNP G G A rs77981146 bycluster;byfrequency;by1000genomes TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 OR4A16,NS,lymphoid_neoplasm,0,1 OR4A16 NM_001005274 exon1 c.G39A p.L13L CCTCCTGGGCCTC 35 4 0.11 45 0 0 0.006 0 1 0 0 OR4A16 81327 hgsc.bcm.edu 37 11 55110739 55110739 + Silent SNP G G A rs78513473 bycluster;byfrequency TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 OR4A16,NS,carcinoma,0,1 OR4A16 NM_001005274 exon1 c.G63A p.V21V TGATGTGAAAAAA 52 5 0.10 44 0 0 0.002 0 1 0 0 FOLR2 2350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71932007 71932007 + Missense_Mutation SNP C C G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_001113535 exon3 c.C244G p.H82D TGGGACCACTGCG 96 14 0.15 88 0 0 49 0 0.00 ARHGEF17 9828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 73070882 73070882 + Missense_Mutation SNP C C T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_014786 exon10 c.C4091T p.A1364V TAGGGGCATCCCA 107 24 0.22 115 0 0 38 5 0.13 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398284 25398284 + Missense_Mutation SNP C C A rs121913529 bycluster TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 KRAS_ENST00000256078,NS,adenocarcinoma,0,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G35T p.G12V ACGCCACCAGCTC 228 51 0.22 152 0 0 0 25136 49 21 0.43 MRPL42 28977 mdanderson.org 37 12 93881369 93881369 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_014050 exon5 c.G316T p.G106X GAGGAAGGACCTA 50 3 0.06 38 0 0 534 0 0.00 BTBD11 121551 broad.mit.edu 37 12 108010914 108010914 + Nonsense_Mutation SNP G G T rs147351765 alternate_allele TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 BTBD11,scalp,malignant_melanoma,0,3 BTBD11 NM_001018072 exon8 c.G2050T p.E684X CATGGCGAGGAGA 78 3 0.04 79 0 0 122 3 5 0 0.00 HECTD4 283450 broad.mit.edu 37 12 112622338 112622338 + Missense_Mutation SNP T T G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 C12orf51_ENST00000377560,NS,carcinoma,0,2 . NM_001109662 exon61 c.A10030C p.T3344P CGGGGGTCAGGCT 40 13 0.33 32 8 0.25 2 33 6 0.18 NCOR2 9612 broad.mit.edu 37 12 124887093 124887093 + Silent SNP C C T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 NCOR2_ENST00000405201,NS,carcinoma,0,11 NCOR2 NM_006312 exon16 c.G1497A p.Q499Q CTGCTGCTGTTGT 52 3 0.06 41 1 0.0243902439 475 11 37 0 0.00 MYO16 23026 hgsc.bcm.edu 37 13 109318410 109318410 + Missense_Mutation SNP A A G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 MYO16,NS,carcinoma,-2,1 MYO16 NM_001198950 exon2 c.A205G p.R69G CTGAAAAGGCTGA 65 3 0.05 78 0 0 -2 1 1 0 0.00 . 0 broad.mit.edu 37 14 68082826 68082827 + RNA INS - - T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . AGTGCAGTTTTTT 6 2 0.33 9 0 0 0 0 ZFP36L1 677 mdanderson.org 37 14 69257094 69257094 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_001244701 exon3 c.C380A p.P127H GAGCTGGGCAGGG 35 3 0.09 31 0 0 138 0 0.00 BATF 10538 mdanderson.org 37 14 75991478 75991478 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_006399 exon2 c.G115T p.A39S CGTATTGCCGCCC 52 3 0.06 48 0 0 88 0 0.00 SLC12A6 9990 mdanderson.org 37 15 34544565 34544565 + Missense_Mutation SNP C C T rs375887656 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 SLC12A6_ENST00000558589,bladder,carcinoma,0,6 SLC12A6_ENST00000558589 NM_133647 exon9 c.G1139A p.R380H AGGGTGCGGTTAC 125 5 0.04 91 0 0 0 6 95 0 0.00 FAM98B 283742 broad.mit.edu 37 15 38776809 38776809 + Silent SNP T T A rs374461368 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . FAM98B NM_173611 exon8 c.T1251A p.G417G AGGAGGTGGTGGT 94 5 0.05 93 1 0.0107526882 53 1 0 0.00 TLE3 7090 mdanderson.org 37 15 70346959 70346959 + Silent SNP G G A rs367926967 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_005078 exon16 c.C1653T p.G551G GGCCTCGCCGCCC 45 3 0.07 56 0 0 170 0 0.00 CREBBP 1387 mdanderson.org 37 16 3820600 3820600 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_004380 exon14 c.C2851A p.P951T GCACAGGCGTCGG 51 3 0.06 45 0 0 144 0 0.00 SOCS1 8651 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 11348860 11348860 + Missense_Mutation SNP C C A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_003745 exon2 c.G476T p.R159L ATGCGGCGCGGCG 31 5 0.16 10 0 0 42 4 0.10 . 0 broad.mit.edu 37 16 31993369 31993371 + RNA DEL CTC CTC - novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 CTC CTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . GGACATCTCCTAC 35 12 0.34 20 2 0.1 7 0 0.00 ADAD2 161931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84227812 84227812 + Missense_Mutation SNP G G A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_139174 exon2 c.G619A p.A207T ATCCCTGCTGTGG 78 12 0.15 73 0 0 0 0 FLJ36000 0 broad.mit.edu 37 17 21906822 21906823 + RNA INS - - TGTT rs58465113 alternate_allele TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . GTGTGTGTGTGTG 9 4 0.44 5 0 0 2 0 0.00 KLHL11 55175 broad.mit.edu 37 17 40010660 40010660 + Missense_Mutation SNP C C T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 KLHL11,colon,carcinoma,+2,1 KLHL11 NM_018143 exon2 c.G1459A p.A487T TTGGTGCCGATTC 164 4 0.02 125 0 0 44 1 44 0 0.00 TMUB2 79089 broad.mit.edu 37 17 42266738 42266738 + Silent SNP T T G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . TMUB2 NM_001076674 exon3 c.T384G p.G128G TGGGGGTGGTGTT 56 13 0.23 51 10 0.1960784314 29 75 1 0.01 LLGL2 3993 mdanderson.org 37 17 73564574 73564574 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_004524 exon11 c.G1054T p.A352S CCCTATGCCCTGG 50 3 0.06 41 0 0 74 0 0.00 TBCD 6904 broad.mit.edu 37 17 80851439 80851439 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . TBCD NM_005993 exon17 c.G1580T p.G527V CTCATGGTATTGA 338 8 0.02 376 1 0.0026595745 94 490 0 0.00 FAM108A1 81926 hgsc.bcm.edu 37 19 1881263 1881263 + Silent SNP G G A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 FAM108A1,NS,carcinoma,0,2 FAM108A1 NM_031213 exon2 c.C303T p.C101C ATACATGCAGGAG 57 3 0.05 50 0 0 0 2 296 0 0.00 FAM108A1 81926 broad.mit.edu;mdanderson.org 37 19 1881347 1881347 + Silent SNP A A G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 FAM108A1,NS,carcinoma,0,1 FAM108A1 NM_031213 exon2 c.T219C p.R73R GTCGGCACGCTCC 21 3 0.14 20 0 0 29 1 137 0 0.00 ZNF799 90576 ucsc.edu 37 19 12501855 12501855 + Missense_Mutation SNP A A G rs201077492 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . ZNF799 NM_001080821 exon4 c.T1357C p.C453R TCCCACATTTGCA 160 5 0.03 140 4 0.0285714286 111 58 9 0.16 rescued with RNA-seq RHPN2 85415 hgsc.bcm.edu 37 19 33493842 33493842 + Missense_Mutation SNP C C A rs137892450 bycluster;byfrequency TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 RHPN2,NS,neuroblastoma,0,1 RHPN2 NM_033103 exon8 c.G825T p.M275I GCTGAGCATGGCA 68 3 0.04 43 1 0.023255814 0 0 1 11 0 0.00 NUMBL 9253 broad.mit.edu 37 19 41173907 41173907 + Silent SNP C C T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . NUMBL NM_004756 exon10 c.G1296A p.Q432Q CTGTTGCTGCTGC 55 3 0.05 41 0 0 49 69 0 0.00 . 147711 bcgsc.ca 37 19 44977071 44977071 + RNA SNP C C G rs1897824 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . ATTTTGCGTATAG 136 13 0.10 143 3 0.020979021 2 0 0.00 IZUMO2 126123 mdanderson.org 37 19 50657888 50657888 + Missense_Mutation SNP C C T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_152358 exon6 c.G592A p.A198T AGACAGCCAGAGA 36 3 0.08 30 0 0 3 0 0.00 COBLL1 22837 broad.mit.edu 37 2 165586537 165586537 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . COBLL1 NM_014900 exon3 c.C319A p.Q107K GGTTCTGTTCAGC 130 3 0.02 129 0 0 122 14 0 0.00 GMPPA 29926 mdanderson.org 37 2 220370469 220370469 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_205847 exon10 c.G886T p.A296S AAGGTGGCCCCCT 46 3 0.07 46 0 0 124 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29628229 29628229 + Silent SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . FRG1B . . . . TTAGGGGAAAATG 321 22 0.07 312 7 0.0224358974 181 136 0 0.00 PIGT 51604 broad.mit.edu 37 20 44053178 44053178 + Silent SNP C C A rs79813306 bycluster TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 PIGT,NS,carcinoma,0,1 PIGT NM_015937 exon11 c.C1443A p.A481A AGCAGCCAAGCCA 122 8 0.07 103 4 0.0388349515 85 1 371 6 0.02 NCOA3 8202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46264898 46264898 + Silent SNP A A C novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_001174088 exon12 c.A1798C p.R600R AATAGCAGAGATC 119 18 0.15 117 0 0 67 15 0.22 PCK1 5105 broad.mit.edu;mdanderson.org 37 20 56138710 56138710 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . PCK1 NM_002591 exon6 c.G888T p.M296I CATGATGAACCCC 65 5 0.08 71 0 0 95 0 0 RTEL1-TNFRSF6B 100533107 hgsc.bcm.edu 37 20 62311958 62311958 + RNA SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . GCCGGGGCTGGGG 36 9 0.25 27 0 0 0 0 ZNF512B 57473 mdanderson.org 37 20 62593699 62593699 + Missense_Mutation SNP G G A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_020713 exon14 c.C2192T p.T731M TTCAGCGTGGGGA 47 3 0.06 46 0 0 40 0 0.00 BAGE 85319 broad.mit.edu 37 21 11058605 11058605 + RNA DEL T T - novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . TAAAGATTTTTTT 6 2 0.33 14 0 0 0 0 . 0 broad.mit.edu 37 22 20977441 20977441 + RNA DEL A A - novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . TAAGGGAAAAAAA 8 3 0.38 5 0 0 0 0 THAP7 80764 hgsc.bcm.edu;broad.mit.edu 37 22 21354471 21354471 + Missense_Mutation SNP A A G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 THAP7,trunk,malignant_melanoma,+1,1 THAP7 NM_030573 exon4 c.T628C p.S210P AGGGGGAGACTGG 70 5 0.07 59 1 0.0169491525 1 1 121 0 0.00 POM121L9P 0 broad.mit.edu 37 22 24659809 24659809 + RNA SNP G G A rs376621154 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . ATCTGCGCACCCG 21 3 0.14 10 0 0 2 0 0.00 POM121L9P 0 broad.mit.edu 37 22 24659813 24659813 + RNA SNP C C T rs368832816 TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . GCGCACCCGGAGG 19 3 0.16 9 0 0 2 0 0.00 TYMP 1890 mdanderson.org 37 22 50966985 50966985 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_001113756 exon3 c.C472A p.L158M ACTCCAGCTTATC 53 3 0.06 62 0 0 617 0 0.00 VGLL4 9686 mdanderson.org 37 3 11606281 11606281 + Missense_Mutation SNP T T C novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_001128219 exon3 c.A485G p.E162G TGCCGCTCCCCCG 26 3 0.12 20 0 0 40 0 0.00 CCDC14 64770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 123665686 123665686 + Missense_Mutation SNP A A T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_022757 exon7 c.T1186A p.L396M CCAACAAATATTT 294 51 0.17 252 0 0 117 28 0.24 EHHADH 1962 broad.mit.edu 37 3 184971758 184971758 + Missense_Mutation SNP T T G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . EHHADH NM_001966 exon1 c.A53C p.N18T GGCGGGTTTCGGA 150 30 0.20 141 29 0.2056737589 73 24 1 0.04 PTPN13 5783 mdanderson.org 37 4 87707089 87707089 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_080685 exon40 c.G6360T p.E2120D TACTGAGGTAACA 44 3 0.07 48 0 0 44 0 0.00 . 0 bcgsc.ca 37 4 93105127 93105127 + RNA SNP C C A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . GAGGTCCAAACCT 29 4 0.14 34 0 0 0 0 FAM105A 54491 mdanderson.org 37 5 14608915 14608915 + Missense_Mutation SNP T T C novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_019018 exon7 c.T686C p.L229P ACACCCTTTTTTC 49 3 0.06 49 0 0 47 0 0.00 PCDHB10 56126 mdanderson.org 37 5 140573922 140573922 + Silent SNP C C T rs376773467 bycluster TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_018930 exon1 c.C1797T p.N599N CCAGAACGCCTGG 23 3 0.13 19 0 0 0 0 PCDHB18 0 broad.mit.edu 37 5 140615614 140615614 + RNA SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 PCDHB18,NS,carcinoma,0,2 PCDHB18 . . . . GGACCCGCACCTG 63 5 0.08 40 0 0 72 2 8 0 0.00 SYNPO 11346 mdanderson.org 37 5 150028987 150028987 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_001166208 exon3 c.G1882T p.V628L ACTTTCGTGGAGA 58 3 0.05 77 0 0 33 0 0.00 DCDC2 51473 broad.mit.edu 37 6 24301981 24301981 + Silent SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . DCDC2 NM_001195610 exon5 c.C519A p.V173V TTCTGTGACCATT 171 4 0.02 197 0 0 53 4 0 0.00 BAG6 7917 broad.mit.edu;mdanderson.org 37 6 31612829 31612829 + Silent SNP A A G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . BAG6 NM_004639 exon10 c.T1281C p.A427A CGGGGGAGCCCCC 48 6 0.13 58 6 0.1034482759 73 476 110 0.23 MSH5-SAPCD1 100532732 hgsc.bcm.edu 37 6 31729509 31729509 + RNA SNP T T C novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . CTTCCCTTTTCTC 61 4 0.07 76 0 0 2 0 0.00 GPR115 221393 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 47678504 47678504 + Missense_Mutation SNP A A G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_153838 exon4 c.A182G p.N61S CTTCCAACTGCAG 193 22 0.11 184 0 0 0 0 MCM7 4176 mdanderson.org 37 7 99697366 99697366 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_005916 exon3 c.C122A p.A41D CGATGAGCCAGCC 53 3 0.06 45 0 0 1290 0 0.00 LRCH4 4034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 100173407 100173407 + Splice_Site SNP T T C novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_002319 exon18 c.1777-2A>G . TTTGGCTGGGGTG 171 26 0.15 156 0 0 2 0 0.00 MIR1207 100302175 mdanderson.org 37 8 129061433 129061433 + RNA SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . . . . . TGGCTGGGTCTGG 47 3 0.06 20 0 0 0 0 SLC24A2 25769 broad.mit.edu 37 9 19786692 19786692 + Missense_Mutation SNP G G T novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 SLC24A2,NS,carcinoma,-1,1 SLC24A2 NM_001193288 exon1 c.C173A p.A58D GAAAAGGCACTGA 140 4 0.03 118 0 0 93 1 0 0 ND1 10625 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 3643 3643 + Missense_Mutation SNP G G A novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . ENST00000361390 exon1 c.G337A p.V113I CTAGCCGTTTACT 11 5 0.45 18 0 0 0 0 IL3RA 3563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 1501338 1501338 + Missense_Mutation SNP C C G novel TCGA-2G-AAEW-01A-11D-A42Y-10 TCGA-2G-AAEW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cef64460-0ab5-4867-9675-da4a7d84310e 5f232b73-5281-4be0-9679-0920bcb4dd29 . . NM_002183 exon12 c.C1117G p.Q373E GAAGTACAGGTCG 481 74 0.15 498 0 0 117 2 0.02