Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV NBPF1 55672 broad.mit.edu 37 1 16918395 16918395 + Missense_Mutation SNP T T C rs60769486 TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . AAACATTTCTCTT 104 5 0.05 103 1 0.0097087379 3 0 0.00 HIVEP3 59269 broad.mit.edu 37 1 42048123 42048123 + Silent SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . HIVEP3 NM_024503 exon4 c.C2346A p.S782S TGAACCGGACCCT 149 4 0.03 127 0 0 235 2 0 0.00 TMEM48 55706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 54269668 54269668 + Missense_Mutation SNP C C G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_018087 exon10 c.G999C p.Q333H CAGGTCCTGCAAG 283 55 0.19 270 0 0 53 18 0.34 SEC22B 9554 broad.mit.edu 37 1 145109259 145109260 + RNA INS - - A rs11386827 bycluster;by1000genomes TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . CCAGCCCGGGGGC 11 4 0.36 5 0 0 0 0 CFH 3075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 196709833 196709833 + Missense_Mutation SNP C C T rs145975787 bycluster;byfrequency;by1000genomes TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_000186 exon18 c.C2867T p.T956M AAGTTACGTACAA 332 34 0.10 327 0 0 0.001 45 0 0.00 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 228554833 228554843 + Frame_Shift_Del DEL GACCAGTTTGA GACCAGTTTGA - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 GACCAGTTTGA GACCAGTTTGA Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . OBSCN NM_001271223 exon97 c.22455_22465del p.7485_7489del CTGCTGGACCAGT 191 14 0.07 164 0 0 2142 1 0 0.00 FMN2 56776 hgsc.bcm.edu 37 1 240371511 240371511 + Silent SNP C C G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e FMN2,NS,carcinoma,+2,1 FMN2 NM_020066 exon5 c.C3399G p.P1133P TCCTCCCCCTCTT 98 6 0.06 63 0 0 2 1 4 0 0.00 ZNF496 84838 broad.mit.edu 37 1 247492780 247492780 + Missense_Mutation SNP T T C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ZNF496 NM_032752 exon3 c.A101G p.E34G GGAAGCTCCCCCT 308 6 0.02 267 4 0.0149812734 80 92 0 0.00 TIMM23 100287932 broad.mit.edu 37 10 51592585 51592585 + Silent SNP T T C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . TIMM23 NM_006327 exon7 c.A549G p.T183T TAGTCCTGTCAGA 112 3 0.03 112 1 0.0089285714 4 509 0 0.00 MUC2 4583 hgsc.bcm.edu 37 11 1092970 1092970 + Missense_Mutation SNP A A C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e MUC2_ENST00000441003,NS,carcinoma,-1,1 MUC2_ENST00000441003 NM_002457 exon30 c.A4789C p.T1597P ACCCCAACACCCA 37 3 0.08 51 1 0.0196078431 -1 1 0 0 PHLDA2 7262 broad.mit.edu 37 11 2950232 2950232 + Silent SNP T T G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . PHLDA2 NM_003311 exon1 c.A363C p.A121A GGCGGGTGCGGCG 42 19 0.45 26 11 0.4230769231 10 0 0 PHLDA2 7262 broad.mit.edu 37 11 2950513 2950513 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e PHLDA2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 PHLDA2 NM_003311 exon1 c.C82A p.R28S CCCCGCGCTTCTT 73 7 0.10 57 1 0.0175438596 10 1 17 0 0.00 SMPD1 6609 hgsc.bcm.edu 37 11 6411972 6411972 + Silent SNP T T G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e SMPD1_ENST00000342245,colon,carcinoma,+1,2 SMPD1_ENST00000342245 NM_000543 exon1 c.T144G p.A48A GCTGGCTCTGTCT 83 5 0.06 61 1 0.0163934426 1 2 12 0 0.00 SYVN1 84447 mdanderson.org 37 11 64895914 64895914 + Silent SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_172230 exon16 c.C1794A p.P598P TGCATCGGGCTCT 68 4 0.06 60 0 0 155 0 0.00 INPPL1 3636 ucsc.edu 37 11 71942183 71942183 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . INPPL1 NM_001567 exon12 c.G1447T p.D483Y TGGCTGGACCTAC 42 4 0.10 54 0 0 120 75 0 0.00 FAT3 120114 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92573793 92573793 + Missense_Mutation SNP T T A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . FAT3 NM_001008781 exon17 c.T10434A p.N3478K TCACAATGGGCCT 156 33 0.21 172 1 0.0058139535 1822 1 0 0.00 CACNA1C 775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 2743461 2743461 + Splice_Site SNP A A C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001129839 exon30 c.3829-2A>C . CCATGCAGCACTA 283 41 0.14 91 0 0 1 0 0.00 PRH1-PRR4 0 hgsc.bcm.edu 37 12 11243716 11243716 + RNA SNP T T C rs199540487 bycluster TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . CACACATATATAT 16 7 0.44 7 0 0 0 0 PRH1-PRR4 0 hgsc.bcm.edu 37 12 11243718 11243718 + RNA SNP T T C rs200560394 bycluster TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . CACATATATATAT 19 5 0.26 6 0 0 0 0 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Missense_Mutation SNP G G A rs199599214 byfrequency TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e TUBA1C,colon,carcinoma,0,1 TUBA1C NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG 427 36 0.08 282 18 0.0638297872 32 1 2972 1193 0.40 TRAFD1 10906 broad.mit.edu 37 12 112579948 112579948 + Silent SNP T T G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . TRAFD1 NM_001143906 exon6 c.T699G p.G233G AGAGGGTGGTGAA 145 25 0.17 90 10 0.1111111111 42 63 0 0.00 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 120616506 120616506 + Missense_Mutation SNP C C A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_006836 exon7 c.G582T p.Q194H ATAGTTCTGGTTG 237 44 0.19 167 0 0 45 5 0.11 CDX2 1045 mdanderson.org 37 13 28542962 28542962 + Missense_Mutation SNP G G C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e CDX2,NS,carcinoma,-1,1 CDX2 NM_001265 exon1 c.C182G p.P61R GGCCCCGGGGACT 12 3 0.25 17 0 0 -1 1 0 0 . 0 broad.mit.edu 37 13 52855276 52855277 + RNA DEL TG TG - rs72183844 alternate_allele TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . TGTGCTTGTGTGT 10 3 0.30 4 0 0 0 0 ATP11A 23250 broad.mit.edu 37 13 113530168 113530168 + Silent SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ATP11A NM_032189 exon28 c.G3240T p.V1080V CATCGTGCTGCTG 92 3 0.03 60 0 0 225 4 0 0.00 CHD8 57680 mdanderson.org 37 14 21871325 21871325 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001170629 exon17 c.C3565A p.Q1189K CAGCCTGTCGAAG 91 4 0.04 63 0 0 20 0 0.00 IPO4 79711 mdanderson.org 37 14 24653309 24653309 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_024658 exon18 c.C1764A p.S588R AAATAGGCTGTAC 124 5 0.04 91 1 0.010989011 196 0 0.00 . 0 broad.mit.edu 37 14 106622157 106622157 + RNA SNP A A C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . GTACCAAGCCTCC 127 5 0.04 92 2 0.0217391304 201 0 0.00 ADAMTS17 170691 broad.mit.edu 37 15 100672218 100672218 + Missense_Mutation SNP T T G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ADAMTS17 NM_139057 exon12 c.A1715C p.N572T GGGGGGTTGTCAC 103 22 0.21 71 10 0.1408450704 127 0 0 LOC653786 0 broad.mit.edu 37 16 22579761 22579764 + RNA DEL TGTT TGTT - rs372533285 bycluster;alternate_allele TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 TGTT TGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . TGTGTGTGTTTGT 337 7 0.02 286 0 0 0 0 USP31 57478 mdanderson.org 37 16 23083466 23083466 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_020718 exon15 c.C2388A p.S796R TGGCTTGCTGCCC 54 3 0.06 46 0 0 12 0 0.00 RBBP6 5930 broad.mit.edu;bcgsc.ca 37 16 24567688 24567688 + Frame_Shift_Del DEL C C - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . RBBP6 NM_018703 exon7 c.594delC p.F198fs AAGTTTCATGATG 72 8 0.11 85 0 0 158 41 5 0.12 PRRT2 112476 hgsc.bcm.edu 37 16 29825015 29825015 + Missense_Mutation SNP G G C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e PRRT2,caecum,carcinoma,0,2 PRRT2 NM_001256442 exon2 c.G640C p.A214P AATGGGGCCCCCC 202 8 0.04 155 2 0.0129032258 0 2 2 0 0.00 KAT8 84148 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 31129017 31129017 + Silent SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_182958 exon1 c.A15G p.G5G ACAGGGAGCTGCT 54 12 0.22 58 0 0 2 0 0.00 DDX19B 11269 broad.mit.edu 37 16 70363771 70363771 + Missense_Mutation SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . DDX19B NM_007242 exon9 c.G823A p.A275T TTCTCCGCCACCT 252 5 0.02 194 0 0 31 84 0 0.00 HYDIN 54768 mdanderson.org 37 16 70954860 70954860 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001270974 exon46 c.C7419A p.Y2473X GTCCCAGTACATG 59 3 0.05 51 0 0 0 0 IL17C 27189 broad.mit.edu 37 16 88705614 88705614 + Missense_Mutation SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . IL17C NM_013278 exon2 c.A232G p.R78G AGGGGGAGGCACG 67 3 0.04 56 1 0.0178571429 6 0 0 ANKRD11 29123 broad.mit.edu 37 16 89346906 89346906 + Missense_Mutation SNP T T G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ANKRD11 NM_001256183 exon9 c.A6044C p.Y2015S GCGGGGTACGGCG 70 41 0.59 53 19 0.358490566 195 114 12 0.11 SPG7 6687 mdanderson.org 37 16 89590464 89590464 + Missense_Mutation SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_003119 exon4 c.C427T p.R143C CGGCTGCGCACCT 48 4 0.08 38 0 0 106 0 0.00 PSMD11 5717 broad.mit.edu 37 17 30771555 30771555 + Missense_Mutation SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . PSMD11 NM_002815 exon1 c.C14T p.A5V CGGCGGCGGTGGT 234 8 0.03 218 1 0.004587156 41 92 0 0.00 C17orf66 256957 mdanderson.org 37 17 34190002 34190002 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_152781 exon8 c.C753A p.D251E CACCTTGTCTTTA 101 5 0.05 125 0 0 0 0 ACLY 47 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40028012 40028012 + Missense_Mutation SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ACLY NM_001096 exon25 c.C2867T p.P956L TCCATGGGGATAA 155 26 0.17 122 1 0.0081967213 85 186 48 0.26 CDC27 996 mdanderson.org 37 17 45234325 45234325 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001114091 exon7 c.C796T p.R266X AACTTCGACCAGT 58 3 0.05 52 0 0 33 0 0.00 MRPL45P2 0 broad.mit.edu 37 17 45560579 45560579 + RNA DEL C C - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . TTTTTTCTTTTTT 237 7 0.03 186 0 0 0 0 UTP18 51096 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 49338191 49338191 + Silent SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_016001 exon1 c.G246A p.E82E GGAGGAGGACAAA 174 31 0.18 123 0 0 70 15 0.21 . 0 broad.mit.edu 37 17 62949617 62949620 + RNA DEL AAAA AAAA - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 AAAA AAAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . CATCTCAAAAAAA 6 2 0.33 7 0 0 4 0 0.00 TMC6 11322 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 76117157 76117157 + Missense_Mutation SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . TMC6 NM_001127198 exon12 c.G1472A p.R491H AGGACACGGCACA 82 6 0.07 65 0 0 42 87 0 0.00 MUC16 94025 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 9048471 9048471 + Missense_Mutation SNP T T C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . MUC16 NM_024690 exon5 c.A33160G p.S11054G TTGTACTGTTTAC 76 6 0.08 51 0 0 4315 0 0 ALKBH6 84964 broad.mit.edu 37 19 36501930 36501930 + Silent SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ALKBH6 NM_198867 exon5 c.C286A p.R96R TCCCTCGGGGATG 120 3 0.03 73 0 0 16 112 0 0.00 MAMSTR 284358 broad.mit.edu 37 19 49218600 49218600 + Missense_Mutation SNP T T G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . MAMSTR NM_001130915 exon5 c.A344C p.D115A TGGGGGTCCGCCC 143 22 0.15 99 7 0.0707070707 36 3 0 0.00 LENG9 94059 mdanderson.org 37 19 54974333 54974333 + Missense_Mutation SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_198988 exon1 c.G443A p.R148H AAGAAGCGCACGC 14 2 0.14 10 0 0 4 0 0.00 ZNF814 730051 bcgsc.ca;mdanderson.org 37 19 58385788 58385788 + Missense_Mutation SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . ZNF814 NM_001144989 exon3 c.T970C p.Y324H ATTCATAAGGTCT 180 7 0.04 127 0 0 93 11 0 0.00 APOB 338 broad.mit.edu 37 2 21255321 21255321 + Silent SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . APOB NM_000384 exon10 c.C1257A p.P419P GGGCTCGGGGATC 70 3 0.04 70 0 0 761 0 0 EIF5B 9669 broad.mit.edu 37 2 99977775 99977777 + In_Frame_Del DEL TGA TGA - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 TGA TGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . EIF5B NM_015904 exon4 c.411_413del p.137_138del TGGGAGTGATGAT 163 7 0.04 136 0 0 95 94 0 0.00 PCDP1 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 120362541 120362541 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001271049 exon10 c.G1002T p.L334F AAAATTGAAGATT 110 19 0.17 85 1 0.0117647059 1 0 0.00 THSD7B 80731 broad.mit.edu;mdanderson.org 37 2 137872842 137872842 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . THSD7B . . . . GCAGCTGCCGCAC 76 4 0.05 76 0 0 506 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179599514 179599514 + Missense_Mutation SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001267550 exon51 c.T15137C p.V5046A TCTTCAACTTTTA 240 33 0.14 289 0 0 0 0 SLC4A3 6508 mdanderson.org 37 2 220505587 220505587 + Missense_Mutation SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_201574 exon22 c.C3605T p.T1202M AGTCCACGGCGGC 54 3 0.06 53 0 0 49 0 0.00 . 0 bcgsc.ca 37 20 6195658 6195658 + RNA SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . TATATGCCCCCTC 169 26 0.15 177 0 0 1 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29628233 29628233 + Missense_Mutation SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . FRG1B . . . . GGGAAAATGGCTT 562 13 0.02 441 3 0.0068027211 181 132 0 0.00 STAU1 6780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 47782664 47782664 + Missense_Mutation SNP C C G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_017453 exon3 c.G75C p.Q25H AAGAGACTGGTTC 139 28 0.20 113 0 0 10 3 0.30 LAMA5 3911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60899145 60899145 + Missense_Mutation SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_005560 exon43 c.C5759T p.P1920L TTGGAAGGCACTG 82 10 0.12 79 0 0 35 8 0.23 BAGE 85319 broad.mit.edu 37 21 11058732 11058733 + RNA DEL TT TT - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . TTACTATTTTTTA 8 3 0.38 5 0 0 0 0 KRTAP10-10 353333 mdanderson.org 37 21 46058034 46058034 + Missense_Mutation SNP G G A rs1785472 by2hit2allele TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_181688 exon1 c.G700A p.V234M CGCCCCGTGTGCT 111 11 0.10 77 1 0.012987013 0 0 TTC38 55020 mdanderson.org 37 22 46664415 46664415 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_017931 exon2 c.G38T p.W13L AGGCCTGGAAGGA 58 3 0.05 75 0 0 0 0 CELSR1 9620 mdanderson.org 37 22 46765695 46765695 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_014246 exon26 c.C7766A p.A2589E CCGACCGCCAGTC 39 3 0.08 53 0 0 19 0 0.00 PHLDB2 90102 broad.mit.edu;bcgsc.ca 37 3 111667853 111667858 + In_Frame_Del DEL TGCTGA TGCTGA - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 TGCTGA TGCTGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . PHLDB2 NM_001134439 exon10 c.2562_2567del p.854_856del GTTTCCTGCTGAT 108 7 0.06 95 0 0 449 8 0 0.00 POPDC2 64091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 119378799 119378799 + Missense_Mutation SNP A A C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_022135 exon1 c.T472G p.S158A GCAGGGACAGGCG 114 11 0.10 113 0 0 1 0 0.00 COL6A5 256076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 130110226 130110226 + Missense_Mutation SNP G G C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e COL6A5,NS,carcinoma,+1,1 COL6A5 NM_153264 exon7 c.G2621C p.R874T CGAACAGATCAGC 475 88 0.19 414 0 0 1 1 0 0 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 159818881 159818881 + RNA SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . AGAAAACGGAGAA 188 27 0.14 160 0 0 48 1 0.02 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e PIK3CA_ENST00000263967,NS,carcinoma,0,1370 PIK3CA_ENST00000263967 NM_006218 exon10 c.G1633A p.E545K ATCACTGAGCAGG 461 50 0.11 425 0 0 0 1370 15 2 0.13 SLIT2 9353 mdanderson.org 37 4 20255518 20255518 + Missense_Mutation SNP C C T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_004787 exon1 c.C80T p.A27V CGCAGGCGTGCCC 24 2 0.08 24 0 0 0 0 HMMR 3161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 162909769 162909769 + Missense_Mutation SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001142556 exon13 c.G1507A p.E503K GCAACTGAGAGCT 306 63 0.21 344 0 0 19 9 0.47 FOXQ1 94234 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 1313401 1313401 + Silent SNP C C G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_033260 exon1 c.C462G p.P154P GTTCCCCTTTTTC 106 16 0.15 75 0 0 0 0 LRRC16A 55604 mdanderson.org 37 6 25509914 25509914 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001173977 exon18 c.G1426T p.G476C TTAGAAGGTTGCA 112 5 0.04 100 0 0 10 0 0.00 DPCR1 135656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30919139 30919139 + Silent SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_080870 exon2 c.A2898G p.E966E TGGAGAAACGACA 69 14 0.20 72 0 0 1 1 1.00 DEF6 50619 broad.mit.edu 37 6 35278309 35278309 + Missense_Mutation SNP G G T rs150604825 bycluster;byfrequency;alternate_allele TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . DEF6 NM_022047 exon3 c.G311T p.R104L ACTATCGGGCAGA 100 3 0.03 76 0 0 36 60 0 0.00 . 0 bcgsc.ca 37 7 35473 35473 + RNA SNP T T C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . TGCTGCTGCCGCC 304 11 0.04 202 3 0.0148514851 0 0 GRID2IP 392862 mdanderson.org 37 7 6548894 6548894 + Missense_Mutation SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001145118 exon12 c.T1822C p.S608P AGGGGGAGGGCAA 62 3 0.05 24 0 0 0 0 SCRN1 9805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 29994942 29994942 + Missense_Mutation SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001145514 exon3 c.C254T p.T85I GCATAGGTCCTTG 156 19 0.12 117 0 0 40 7 0.18 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . CCGGGGTCCTTGA 193 4 0.02 113 1 0.0088495575 0 0 AZGP1P1 0 broad.mit.edu 37 7 99578706 99578706 + RNA DEL A A - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . GTTTACAGTGAAA 12 6 0.50 8 1 0.125 0 0 KIF13B 23303 broad.mit.edu 37 8 28929816 28929816 + Silent SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . KIF13B NM_015254 exon39 c.C4539A p.G1513G GTCAGGGCCCATC 241 4 0.02 159 0 0 192 13 0 0.00 FAM83A 84985 broad.mit.edu 37 8 124219708 124219708 + Missense_Mutation SNP A A C novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e FAM83A,NS,carcinoma,0,1 FAM83A NM_032899 exon4 c.A1085C p.H362P CCCCACACCCGCC 56 11 0.20 26 4 0.1538461538 64 1 0 0 RECQL4 9401 mdanderson.org 37 8 145738815 145738815 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_004260 exon14 c.C2250A p.S750R TTCCCGGCTGCAC 52 3 0.06 23 0 0 220 0 0.00 KCNV2 169522 broad.mit.edu 37 9 2717880 2717880 + Silent SNP A A T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . KCNV2 NM_133497 exon1 c.A141T p.T47T CTGGACAGAGGGC 238 6 0.03 152 0 0 72 0 0 . 0 broad.mit.edu 37 9 68406792 68406792 + RNA DEL A A - novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . GAGACCAAAGGCC 9 2 0.22 5 0 0 0 0 GPR144 347088 mdanderson.org 37 9 127215734 127215734 + Missense_Mutation SNP A A G novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001161808 exon4 c.A758G p.Q253R TGGGCCAGGATCA 53 3 0.06 36 0 0 0 0 KCNT1 57582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 138662153 138662153 + Silent SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e KCNT1,NS,carcinoma,+1,1 KCNT1 NM_020822 exon17 c.G1629A p.Q543Q GGGACAGGAGTCT 58 9 0.16 61 0 0 1 1 0 0 PNPLA7 375775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 140379046 140379046 + Silent SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_001098537 exon21 c.C2340T p.S780S GATGGCGCTGAGG 85 10 0.12 93 0 0 0 0 SPANXN5 494197 broad.mit.edu 37 X 52825639 52825639 + Silent SNP G G A novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . SPANXN5 NM_001009616 exon2 c.C108T p.L36L CGGTTCGAGGACT 254 6 0.02 178 0 0 12 1 0 0.00 AR 367 mdanderson.org 37 X 66766276 66766276 + Missense_Mutation SNP G G T novel TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . NM_000044 exon1 c.G1288T p.A430S TCAGCCGCCGCTT 27 3 0.11 27 0 0 0 0 . 100874520 bcgsc.ca 37 Y 10011625 10011625 + RNA SNP C C T rs4033864 TCGA-2G-AAEX-01A-11D-A42Y-10 TCGA-2G-AAEX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b3a994c1-3c17-4147-a513-92bfb4f2b432 3d8c1d4a-4857-40c9-93d8-f7a5300fa83e . . . . . . AATCAGCTTATTC 95 9 0.09 66 1 0.0151515152 1 0 0.00