Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CSF3R 1441 mdanderson.org 37 1 36939198 36939198 + Missense_Mutation SNP C C A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_156039 exon6 c.G511T p.G171W AGTCCCCTTGGGT 39 3 0.08 46 0 0 20 0 0.00 COPA 1314 hgsc.bcm.edu;bcgsc.ca 37 1 160264296 160264298 + In_Frame_Del DEL TCT TCT - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 TCT TCT Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . COPA NM_001098398 exon25 c.2680_2682del p.894_894del TCCAGATCTTCTT 231 46 0.20 189 0 0 181 629 0 0.00 FMO1 2326 mdanderson.org 37 1 171251463 171251463 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_002021 exon7 c.G1174T p.V392F GTTCGAGTCCTGA 127 5 0.04 103 0 0 2 0 0.00 PHYH 5264 hgsc.bcm.edu 37 10 13330436 13330436 + Missense_Mutation SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 PHYH,NS,carcinoma,-1,2 PHYH NM_006214 exon6 c.G602A p.R201Q TTGTTCCGGCTGA 72 3 0.04 73 1 0.0136986301 -1 2 73 0 0.00 PCDH15 65217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 55583018 55583018 + Missense_Mutation SNP T T C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001142763 exon35 c.A4489G p.I1497V CCTCAATAGTATT 94 24 0.26 88 0 0 0 0 NPFFR1 64106 mdanderson.org 37 10 72014845 72014845 + Silent SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_022146 exon4 c.G1161A p.S387S AGGGCCCGACTCA 14 2 0.14 12 0 0 0 0 ZMIZ1 57178 mdanderson.org 37 10 81061922 81061922 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_020338 exon18 c.G2078T p.G693V TGCAAGGACTCCT 28 3 0.11 60 0 0 283 0 0.00 INPP5A 3632 mdanderson.org 37 10 134523943 134523943 + Silent SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_005539 exon8 c.G630T p.L210L GGCACTGGGCTAC 54 3 0.06 67 0 0 44 0 0.00 VENTX 27287 mdanderson.org 37 10 135053695 135053695 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_014468 exon3 c.G662T p.C221F CCTGCTGCGGGCA 18 2 0.11 23 0 0 266 0 0.00 OR51E1 143503 broad.mit.edu 37 11 4674157 4674157 + Missense_Mutation SNP G G T rs192878981 bycluster;by1000genomes;alternate_allele TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 OR51E1,caecum,carcinoma,-1,3 OR51E1 NM_152430 exon2 c.G401T p.R134L CACTGCGCCATGC 73 5 0.07 82 0 0 67 3 0 0 VWCE 220001 mdanderson.org 37 11 61039229 61039229 + Missense_Mutation SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_152718 exon14 c.G1703A p.C568Y AGAGAGCAGCCTG 65 4 0.06 57 0 0 24 0 0.00 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . GGTGCAGCATGCC 34 10 0.29 19 0 0 0 0 PICALM 8301 ucsc.edu 37 11 85685760 85685760 + Silent SNP T T C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . PICALM NM_007166 exon19 c.A1935G p.S645S TGCTCCTGATACA 43 4 0.09 75 0 0 82 144 0 0.00 PGR 5241 mdanderson.org 37 11 100999388 100999388 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_000926 exon1 c.C414A p.S138R CCAAGAGCTGGTG 23 2 0.09 21 0 0 0 0 ST14 6768 mdanderson.org 37 11 130060496 130060496 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_021978 exon7 c.G782T p.R261L CCTTCCGCAGCTT 49 3 0.06 51 0 0 16 0 0.00 LRP6 4040 broad.mit.edu 37 12 12303884 12303884 + Silent SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . LRP6 NM_002336 exon13 c.C2880A p.P960P GTGGATGGGAAGG 203 4 0.02 165 1 0.0060606061 170 58 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398284 25398284 + Missense_Mutation SNP C C A rs121913529 bycluster TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 KRAS_ENST00000256078,NS,adenocarcinoma,0,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G35T p.G12V ACGCCACCAGCTC 244 43 0.18 175 0 0 0 25136 45 10 0.22 PLXNC1 10154 mdanderson.org 37 12 94542977 94542977 + Missense_Mutation SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_005761 exon1 c.C230T p.S77L GCCTCTCGCGCCT 29 3 0.10 25 0 0 3 0 0.00 METAP2 10988 broad.mit.edu 37 12 95867964 95867964 + Silent SNP T T G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . METAP2 NM_006838 exon1 c.T9G p.G3G GGCGGGTGTGGAG 110 25 0.23 90 18 0.2 28 235 16 0.07 . 0 broad.mit.edu 37 12 127423596 127423597 + RNA DEL TG TG - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . TGTGTTTGTGTGT 8 4 0.50 12 0 0 0 0 GPC5 2262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 92345961 92345961 + Silent SNP G G A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_004466 exon3 c.G846A p.L282L CTGCCTGGCGCAC 47 22 0.47 57 0 0 0 0 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 96772134 96772134 + Missense_Mutation SNP C C A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_018036 exon31 c.G4525T p.V1509F TTATAACTGGTTC 99 29 0.29 81 0 0 13 5 0.38 GABPB1 2553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 50581739 50581739 + Missense_Mutation SNP G G C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_005254 exon7 c.C860G p.S287C GGAATAGAGTGCA 122 27 0.22 71 0 0 143 37 0.26 BNIP2 663 mdanderson.org 37 15 59981599 59981599 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_004330 exon1 c.C41A p.P14Q CGTGGCGGCGGCG 54 3 0.06 43 0 0 0 0 GOLGA6D 653643 broad.mit.edu 37 15 75580675 75580676 + Frame_Shift_Del DEL TG TG - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . GOLGA6D NM_001145224 exon7 c.534_535del p.178_179del CTGTGCTGTGTCT 12 4 0.33 8 0 0 9 0 0 KREMEN2 79412 mdanderson.org 37 16 3017029 3017029 + Silent SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_024507 exon6 c.C759T p.G253G GCCAGGCGCCGCG 16 2 0.13 15 0 0 3 0 0.00 MEFV 4210 mdanderson.org 37 16 3304633 3304633 + Silent SNP G G A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_000243 exon2 c.C435T p.S145S GGGCTGGCTGCAC 36 3 0.08 29 0 0 0 0 TAOK2 9344 mdanderson.org 37 16 29996705 29996705 + Missense_Mutation SNP C C T rs373048486 TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001252043 exon14 c.C1594T p.R532W GCGCAGCGGGCTG 40 3 0.08 39 0 0 222 0 0.00 ITGAL 3683 mdanderson.org 37 16 30532938 30532938 + Silent SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_002209 exon31 c.G3465T p.L1155L CTGCCTGAAGCCC 42 3 0.07 56 0 0 124 0 0.00 CCDC144C 348254 hgsc.bcm.edu 37 17 20279706 20279706 + RNA SNP C C T rs146426615 by1000genomes TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . TCTTCCCGCAAAC 89 22 0.25 89 0 0 0.005 170 0 0.00 RNF43 54894 mdanderson.org 37 17 56435856 56435856 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_017763 exon9 c.C1281A p.H427Q AGCAGGGTGCTGT 72 4 0.06 59 0 0 15 0 0.00 . 0 broad.mit.edu 37 17 77899577 77899577 + RNA DEL C C - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . TCTGGTCCCCCGG 6 2 0.33 5 0 0 0 0 TXNDC2 84203 hgsc.bcm.edu 37 18 9886894 9886894 + Missense_Mutation SNP A A G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 TXNDC2_ENST00000306084,bladder,carcinoma,0,4 TXNDC2_ENST00000306084 NM_001098529 exon2 c.A418G p.K140E TCAGAAAAAGCCA 58 3 0.05 90 1 0.0111111111 0 4 0 0 CABLES1 91768 mdanderson.org 37 18 20716388 20716388 + Missense_Mutation SNP C C T rs371732182 TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001100619 exon1 c.C662T p.A221V TGCCGGCGGCCGC 32 3 0.09 56 0 0 13 0 0.00 INSR 3643 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 7143086 7143086 + Silent SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_000208 exon12 c.C2283A p.R761R GGACCTGCGTTTC 112 5 0.04 99 0 0 28 0 0.00 ANKLE1 126549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17396520 17396520 + Missense_Mutation SNP A A C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 FLJ39369,NS,carcinoma,-2,1 FLJ39369 NM_152363 exon8 c.A1567C p.I523L CGTCAGATCTTGG 90 26 0.29 72 0 0 -2 1 5 4 0.80 MEF2BNB-MEF2B 4207 mdanderson.org 37 19 19256659 19256659 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_005919 exon10 c.C942A p.C314X CAGGCCGCAGAGG 37 3 0.08 30 0 0 4 0 0.00 ZNF738 148203 hgsc.bcm.edu 37 19 21558947 21558947 + RNA SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . CATAGGGCCATCT 36 8 0.22 17 0 0 5 2 0.40 GRAMD1A 57655 broad.mit.edu 37 19 35510143 35510143 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . GRAMD1A NM_020895 exon12 c.G1262T p.R421L AGCGCCGGGTGCT 109 3 0.03 102 0 0 39 578 0 0.00 . 147711 bcgsc.ca 37 19 44977078 44977078 + RNA SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . GTATAGCTCTGTT 132 8 0.06 92 0 0 0 0 HIF3A 64344 broad.mit.edu 37 19 46825102 46825102 + Missense_Mutation SNP A A C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 HIF3A_ENST00000377670,bladder,carcinoma,0,2 HIF3A NM_152795 exon10 c.A1214C p.D405A CCGCTGACCCCCG 99 15 0.15 87 7 0.0804597701 154 2 19 3 0.16 ASXL2 55252 mdanderson.org 37 2 25965421 25965421 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_018263 exon12 c.C3785A p.A1262D TCTCTGGCTAGGG 86 4 0.05 75 0 0 64 0 0.00 SFTPB 6439 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 2 85890852 85890852 + Missense_Mutation SNP C C T rs371267944 TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_198843 exon8 c.G827A p.R276H AGCATGCGGCCCA 96 5 0.05 61 0 0 1 0 0.00 FER1L5 90342 mdanderson.org 37 2 97361797 97361797 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 FER1L5,right_upper_lobe,carcinoma,-2,1 FER1L5 NM_001113382 exon36 c.G4147T p.E1383X CTGTCTGAGAAGA 47 3 0.06 34 0 0 -2 1 0 0 IMP4 92856 mdanderson.org 37 2 131103261 131103261 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_033416 exon5 c.G428T p.R143L AGCATCGGGGCAC 59 3 0.05 46 0 0 716 0 0.00 CCDC150 284992 broad.mit.edu 37 2 197511227 197511227 + Splice_Site SNP A A G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . CCDC150 NM_001080539 exon2 c.A175G p.R59G GAAAAAAGGTAAC 138 3 0.02 125 0 0 96 1 0 0.00 SNRPB 6628 hgsc.bcm.edu;mdanderson.org 37 20 2442419 2442419 + Missense_Mutation SNP G G A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 SNRPB,NS,carcinoma,+1,1 SNRPB NM_198216 exon7 c.C706T p.R236C GTGGGCGCATTCC 92 4 0.04 84 0 0 1 1 3376 3 0.00 ANKRD30BP2 0 broad.mit.edu 37 21 14415103 14415103 + RNA SNP C C G rs369320513 bycluster TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . CAGGCTCTGCAAT 33 6 0.18 27 0 0 0 0 ANKRD30BP2 0 broad.mit.edu 37 21 14415122 14415122 + RNA SNP C C T rs373171837 bycluster TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . GGGAGGCTTGTGC 30 5 0.17 28 0 0 0 0 C22orf43 51233 broad.mit.edu 37 22 23974156 23974156 + Missense_Mutation SNP T T C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . C22orf43 NM_016449 exon1 c.A55G p.K19E CGTCCTTCCCCCT 233 8 0.03 159 3 0.0188679245 18 0 0 TCF20 6942 broad.mit.edu 37 22 42608228 42608228 + Silent SNP T T C novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . TCF20 NM_181492 exon1 c.A3084G p.G1028G AGGGTCTCCCCCT 95 4 0.04 85 0 0 164 109 0 0.00 PLXNB2 23654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 50728449 50728449 + Missense_Mutation SNP C C A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_012401 exon3 c.G565T p.D189Y TCCGGTCCAACAG 189 32 0.17 130 0 0 154 28 0.18 . 0 broad.mit.edu 37 3 10035779 10035783 + RNA DEL AGTCT AGTCT - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 AGTCT AGTCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . AAGAGAAGTCTGA 12 4 0.33 8 0 0 1 0 0.00 CADM2 253559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 86010725 86010725 + Missense_Mutation SNP A A G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 CADM2_ENST00000383699,NS,lymphoid_neoplasm,-2,2 CADM2_ENST00000383699 NM_001167675 exon8 c.A898G p.N300D ACGGATAATGGTA 119 18 0.15 109 0 0 -2 2 1 0 0.00 DHFRL1 200895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 93780000 93780000 + Missense_Mutation SNP C C G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001195643 exon2 c.G356C p.S119T ACAGAACTGCCAC 177 27 0.15 184 0 0 10 3 0.30 ALDH1L1 10840 mdanderson.org 37 3 125872417 125872417 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001270364 exon7 c.C758A p.T253K AAAAATGTCAGTT 91 5 0.05 63 1 0.0158730159 0 0 EIF4G1 1981 mdanderson.org 37 3 184042695 184042695 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001194947 exon18 c.G2670T p.E890D GGAAGAGCTGGAA 49 3 0.06 39 0 0 666 0 0.00 MGC45800 0 mdanderson.org 37 4 183063907 183063907 + RNA SNP C C A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . CTGGTCCCAGGAG 28 3 0.11 23 0 0 0 0 MROH2B 133558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 41009457 41009457 + Silent SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 HEATR7B2,NS,carcinoma,-1,3 HEATR7B2 NM_173489 exon32 c.G3345A p.G1115G GAGTTTCCCACTG 69 8 0.12 85 0 0 -1 3 0 0 CCNI2 645121 mdanderson.org 37 5 132084162 132084162 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 CCNI2,NS,carcinoma,-2,1 CCNI2 NM_001039780 exon2 c.G553T p.V185L ATTTCAGTGAAGG 54 4 0.07 69 0 0 -2 1 33 0 0.00 ZBTB9 221504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33424120 33424120 + Missense_Mutation SNP A A G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_152735 exon2 c.A1243G p.I415V TGTGGCATCTGCA 102 23 0.23 72 0 0 170 51 0.30 TNFRSF21 27242 mdanderson.org 37 6 47277201 47277201 + Missense_Mutation SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_014452 exon1 c.G47A p.R16H GCGATGCGGCTGC 18 3 0.17 12 0 0 71 1 0.01 C6orf70 55780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 170159980 170159980 + Missense_Mutation SNP C C A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_018341 exon7 c.C652A p.L218M CAGTTACTGAAGA 80 17 0.21 67 0 0 61 16 0.26 RNF216 54476 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 5781139 5781139 + Missense_Mutation SNP A A T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . RNF216 NM_207111 exon4 c.T509A p.V170D GGGTTGACAATGT 261 50 0.19 185 2 0.0108108108 71 329 76 0.23 C7orf26 79034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6634134 6634134 + Silent SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_024067 exon3 c.G483T p.P161P GGTGCCGGGATCC 125 20 0.16 89 0 0 404 80 0.20 ZNF680 340252 ucsc.edu 37 7 63981631 63981631 + Missense_Mutation SNP G G A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 ZNF680,NS,carcinoma,+1,1 ZNF680 NM_178558 exon4 c.C1501T p.R501W AGGACCGGTTAAA 180 1 0.01 132 0 0 58 1 105 24 0.23 CASD1 64921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 94167043 94167043 + Nonsense_Mutation SNP T T G novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_022900 exon9 c.T1103G p.L368X TACTTTTACAATC 172 39 0.23 99 0 0 67 11 0.16 EPHB4 2050 hgsc.bcm.edu;broad.mit.edu 37 7 100421432 100421432 + Frame_Shift_Del DEL C C - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 EPHB4,NS,carcinoma,0,1 EPHB4 NM_004444 exon3 c.246delC p.G82fs ACGGCGCCCCGCC 72 11 0.15 48 0 0 106 300 0 0.00 KCP 375616 broad.mit.edu 37 7 128548302 128548304 + RNA DEL AAG AAG - rs139059512 by1000genomes;alternate_allele TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 AAG AAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . KCP . . . . GAAAGAAAGAAGA 12 6 0.50 9 0 0 16 0 0 XKR6 286046 mdanderson.org 37 8 10755923 10755923 + Missense_Mutation SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 XKR6,colon,carcinoma,0,1 XKR6 NM_173683 exon3 c.G1465A p.A489T TCATTGCGATCCC 68 4 0.06 40 0 0 0 1 0 0 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110498968 110498968 + Missense_Mutation SNP A A T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_177531 exon59 c.A9798T p.E3266D TGGTGAAGATTAC 287 47 0.16 195 0 0 0 0 RAD21 5885 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 117861253 117861254 + Frame_Shift_Del DEL CT CT - novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 CT CT Unknown Untested Somatic . WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . RAD21 NM_006265 exon13 c.1636_1637del p.546_546del CGCCCCCTGATGC 162 33 0.20 192 0 0 95 563 164 0.29 . 441420 bcgsc.ca 37 9 45376969 45376969 + RNA SNP C C A novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . . . . . TCTCAGCACCCAG 65 14 0.22 57 3 0.0526315789 1 0 0.00 AMER1 139285 mdanderson.org 37 X 63410102 63410102 + Missense_Mutation SNP C C T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_152424 exon2 c.G3065A p.R1022H GAGGGACGAGCTA 76 4 0.05 61 0 0 19 0 0.00 SRPK3 26576 mdanderson.org 37 X 153046776 153046776 + Missense_Mutation SNP G G T novel TCGA-2G-AAF6-01A-11D-A42Y-10 TCGA-2G-AAF6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 64a7112f-6a25-40c7-9e6a-c9bf107e05a4 9a637380-4a84-4cfc-8a4c-4a61515e9229 . . NM_001170761 exon2 c.G165T p.Q55H GGAACAGGAAGAC 127 5 0.04 136 0 0 0 0