Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV LINC00115 0 broad.mit.edu 37 1 761957 761958 + RNA INS - - T rs59038458 bycluster TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . AAAACCACTAAGG 36 33 0.92 38 32 0.8421052632 0 0 ARHGEF16 27237 mdanderson.org 37 1 3396390 3396390 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_014448 exon14 c.G1903T p.E635X CAGGTGGAGATCA 42 3 0.07 47 0 0 96 0 0.00 ECE1 1889 broad.mit.edu 37 1 21586876 21586876 + Missense_Mutation SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . ECE1 NM_001397 exon5 c.C503T p.T168M CTGGCCGTGGAGT 108 4 0.04 101 0 0 76 24 0 0.00 COL11A1 1301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 103488447 103488447 + Missense_Mutation SNP C C A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd COL11A1,NS,carcinoma,+2,1 COL11A1 NM_080629 exon8 c.G1132T p.D378Y TGCCGTCTATTTC 125 15 0.12 147 0 0 2 1 0 0 OLFML3 56944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 114524091 114524091 + Silent SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd OLFML3,NS,carcinoma,+2,1 OLFML3 NM_020190 exon3 c.C921T p.D307D ACTGGACACAGAG 115 15 0.13 95 0 0 2 1 54 1 0.02 NBPF10 100132406 hgsc.bcm.edu 37 1 145293535 145293535 + Missense_Mutation SNP C C G rs55936365 TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd NBPF10,NS,carcinoma,0,2 NBPF10 NM_001039703 exon1 c.C130G p.L44V TGTTTTCTAACTC 49 3 0.06 73 2 0.0273972603 0 2 1 0 0.00 ARNT 405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150785719 150785719 + Missense_Mutation SNP G G C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001668 exon21 c.C2209G p.R737G TTGAACGATGATG 169 28 0.17 149 0 0 21 4 0.19 ADAMTS14 140766 mdanderson.org 37 10 72489934 72489934 + Missense_Mutation SNP G G T rs202093253 by1000genomes;alternate_allele TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_139155 exon6 c.G1031T p.R344L AGCAGCGCCAGGA 42 3 0.07 42 0 0 2 0 0.00 AVPI1 60370 mdanderson.org 37 10 99439617 99439617 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_021732 exon2 c.G46A p.A16T TCGGGGCCTGCCA 45 3 0.07 77 0 0 30 0 0.00 SLC25A28 81894 broad.mit.edu 37 10 101370677 101370677 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd SLC25A28,NS,carcinoma,0,1 SLC25A28 NM_031212 exon4 c.G1024A p.A342T ACCATGCGATGGC 118 4 0.03 131 2 0.0152671756 34 1 131 0 0.00 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 1271589 1271589 + Silent SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_002458 exon31 c.C13479T p.S4493S CAGCTCCAAAGCC 366 42 0.11 343 0 0 0 0 GTF2H1 2965 mdanderson.org 37 11 18354753 18354753 + Missense_Mutation SNP C C A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001142307 exon3 c.C132A p.S44R AATCAGCCATATG 32 3 0.09 57 0 0 19 0 0.00 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . GGTGCAGCATGCC 38 8 0.21 45 0 0 0 0 TMEM151A 256472 mdanderson.org 37 11 66061946 66061946 + Missense_Mutation SNP G G A rs202127682 bycluster;by1000genomes TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_153266 exon2 c.G229A p.A77T GAGGCCGCCTTGG 55 4 0.07 69 0 0 0.002 0 0 LRP5 4041 bcgsc.ca 37 11 68216457 68216457 + Silent SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . LRP5 NM_002335 exon23 c.C4767T p.S1589S GGACAGCTGCCCG 32 4 0.13 24 0 0 136 99 0 0.00 SYTL2 54843 broad.mit.edu 37 11 85445575 85445575 + Missense_Mutation SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd SYTL2_ENST00000316356,colon,carcinoma,+1,1 SYTL2 NM_001162953 exon6 c.C797T p.A266V CCTCTCGCTTTCA 157 5 0.03 178 0 0 231 1 0 0 ME3 10873 mdanderson.org 37 11 86382933 86382933 + Silent SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001014811 exon1 c.C54A p.A18A GCCGCAGGCCCGG 27 2 0.07 51 0 0 1 0 0.00 TULP3 7289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 3040319 3040319 + Missense_Mutation SNP A A C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_003324 exon6 c.A609C p.R203S AGTAAGATGTCGG 189 22 0.12 103 0 0 11 0 0.00 . 220112 bcgsc.ca 37 13 52482800 52482800 + RNA SNP G G T rs377748800 TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . TCTGAAGGCATTG 94 14 0.15 96 1 0.0104166667 4 0 0.00 SUPT16H 11198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 21830430 21830430 + Silent SNP A A G novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_007192 exon15 c.T1719C p.Y573Y TGGGCAATAAAAG 89 6 0.07 82 0 0 35 7 0.20 WDR25 79446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 100847625 100847625 + Missense_Mutation SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001161476 exon2 c.G364A p.V122I AGCCATGTTCCAG 145 17 0.12 115 0 0 11 4 0.36 . 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 106173780 106173780 + RNA SNP G G C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . GCCAGCGAACCAG 343 9 0.03 296 0 0 4502 1 0.00 ALPK3 57538 hgsc.bcm.edu 37 15 85401530 85401530 + Silent SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_020778 exon6 c.G4167A p.E1389E AAGGGAGAGCCCC 23 5 0.22 25 0 0 0 0 CACNA1H 8912 mdanderson.org 37 16 1252375 1252375 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_021098 exon9 c.G1925T p.G642V CGCCAGGCACCGG 45 3 0.07 43 0 0 0 0 ROGDI 79641 mdanderson.org 37 16 4848588 4848588 + Silent SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_024589 exon7 c.C513A p.I171I GGCGGCGATCTCG 19 3 0.16 15 0 0 87 0 0.00 VMO1 284013 mdanderson.org 37 17 4689636 4689636 + Silent SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001144939 exon1 c.C12A p.G4G TCCTGCGCCCCGC 11 3 0.27 24 0 0 3 0 0.00 DNAH9 1770 mdanderson.org 37 17 11502133 11502133 + Silent SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd DNAH9,NS,carcinoma,+2,1 DNAH9 NM_001372 exon1 c.C318T p.T106T TCGCACCGGGCCC 15 2 0.13 16 0 0 2 1 1 0 0.00 TVP23C 201158 broad.mit.edu 37 17 15441469 15441469 + Splice_Site SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . GTGTTCCGCAAAA 353 7 0.02 466 1 0.0021459227 1 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 201 17 0.08 218 11 0.0504587156 13 5 0.38 SREBF1 6720 broad.mit.edu 37 17 17740045 17740045 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . SREBF1 NM_004176 exon1 c.87delC p.I29fs ACCTTCGATGTCG 6 2 0.33 8 0 0 47 9 0 0.00 SREBF1 6720 broad.mit.edu 37 17 17740047 17740047 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . SREBF1 NM_004176 exon1 c.85delA p.I29fs CTTCGATGTCGGT 6 2 0.33 8 0 0 47 9 0 0.00 MYO15A 51168 broad.mit.edu 37 17 18023051 18023051 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd MYO15A,NS,carcinoma,0,1 MYO15A NM_016239 exon2 c.G937T p.E313X GATTACGAACCCC 54 3 0.06 56 0 0 268 1 0 0 DPRXP4 503645 hgsc.bcm.edu;ucsc.edu 37 17 29302829 29302829 + RNA SNP T T A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . TGCAGATGACTTC 89 14 0.16 97 0 0 3 0 0.00 KRT23 25984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39092824 39092824 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_015515 exon2 c.C32A p.P11H GCCGAGGGGGTCT 201 22 0.11 237 0 0 4 1 0.25 LRRC37A 9884 broad.mit.edu 37 17 44409918 44409918 + Splice_Site SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . LRRC37A NM_014834 exon10 c.C4705T p.L1569F TTTTAGCTCAAAA 302 13 0.04 223 3 0.0134529148 19 72 0 0.00 HOXB4 3214 mdanderson.org 37 17 46655235 46655235 + Silent SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_024015 exon1 c.C447T p.H149H GCTCACGTGAACT 44 3 0.07 32 0 0 0 0 SLC39A11 201266 mdanderson.org 37 17 70645040 70645040 + Silent SNP C C A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001159770 exon9 c.G852T p.V284V CAGCACCACGGCA 83 5 0.06 55 0 0 22 0 0.00 FASN 2194 broad.mit.edu 37 17 80041214 80041214 + Missense_Mutation SNP A A C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . FASN NM_004104 exon32 c.T5429G p.V1810G GCCCACACCTCCC 90 30 0.33 82 18 0.2195121951 154 112 9 0.08 MAP1S 55201 mdanderson.org 37 19 17837105 17837105 + Silent SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_018174 exon5 c.G912A p.L304L CAGCCTGCTGCGG 39 3 0.08 31 0 0 71 0 0.00 TIMM50 92609 mdanderson.org 37 19 39971461 39971461 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001001563 exon1 c.C277T p.R93X AGGGAGCGAGTGG 28 2 0.07 44 0 0 0 0 ERCC2 2068 broad.mit.edu 37 19 45855573 45855573 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . ERCC2 NM_000400 exon22 c.G2084A p.R695H ATCCAGCGGGGCA 69 4 0.06 85 1 0.0117647059 78 124 0 0.00 DNAAF3 352909 mdanderson.org 37 19 55673073 55673073 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001256714 exon6 c.C805A p.R269S CGTAGCGGGAGCC 27 2 0.07 24 0 0 17 0 0.00 SLC39A10 57181 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 196581655 196581655 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_020342 exon7 c.C1991T p.T664I AAGAAACAGGAAT 107 10 0.09 122 0 0 5 2 0.40 ITSN1 6453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 35144498 35144498 + Silent SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001001132 exon12 c.G1176A p.E392E GCAGGAGAGGAAG 165 17 0.10 121 0 0 10 3 0.30 IL17REL 400935 mdanderson.org 37 22 50439249 50439249 + Silent SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001001694 exon5 c.C153A p.T51T CTCCTGGGTGTCC 29 3 0.10 37 0 0 0 0 LMCD1 29995 bcgsc.ca 37 3 8543418 8543418 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . LMCD1 . . . . TTGGCTGGCCTCG 29 7 0.24 39 0 0 38 0 0 LIMD1 8994 broad.mit.edu 37 3 45637462 45637462 + Missense_Mutation SNP C C T rs371029378 TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . LIMD1 NM_014240 exon1 c.C1091T p.A364V AGGGTGCGGTCCC 194 4 0.02 212 0 0 34 0 0 PLXNB1 5364 mdanderson.org 37 3 48445924 48445924 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001130082 exon38 c.C6377A p.A2126D ACAGCAGCTGCAA 44 3 0.07 55 0 0 65 0 0.00 C3orf58 205428 mdanderson.org 37 3 143691653 143691653 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_173552 exon1 c.C479T p.A160V CCGAGGCGGTGGA 16 3 0.19 27 0 0 0 0 NDUFB5 4711 mdanderson.org 37 3 179322665 179322665 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001199958 exon1 c.G62T p.R21L CTGGCCGGCCCCT 72 3 0.04 106 0 0 149 0 0.00 DSPP 1834 bcgsc.ca 37 4 88537027 88537027 + Missense_Mutation SNP C C A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . DSPP NM_014208 exon5 c.C3213A p.D1071E CAGTGACAGCAGT 99 7 0.07 115 1 0.0086956522 174 0 0 FAM170A 340069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 118965473 118965473 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_182761 exon1 c.C10T p.R4X AAACGACGACAAA 101 20 0.20 74 0 0 7 0 0.00 PDE6A 5145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 149323894 149323894 + Missense_Mutation SNP C C T rs147159579 bycluster;byfrequency TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_000440 exon1 c.G343A p.V115I TGTGGACATTGAA 122 13 0.11 111 0 0 0.001 0 0 FLT4 2324 mdanderson.org 37 5 180055910 180055910 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_182925 exon8 c.G1075A p.A359T ACGCTGCCAGCTT 47 3 0.06 55 0 0 1 0 0.00 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 28134497 28134497 + RNA SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . AGTTTGCCCAGAG 86 9 0.10 78 0 0 4 0 0.00 MAP3K4 4216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 161533755 161533755 + Silent SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_005922 exon25 c.G4575A p.A1525A GCGTGCGGCCGAC 130 7 0.05 153 0 0 90 20 0.22 CASD1 64921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 94183874 94183874 + Missense_Mutation SNP A A T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_022900 exon17 c.A2114T p.K705I TTGGAAAAATTTC 115 15 0.13 93 0 0 16 0 0.00 PPP1R3A 5506 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 113518008 113518008 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_002711 exon4 c.G3139A p.D1047N AGCTGTCAGATTC 103 6 0.06 109 0 0 0 0 KCP 375616 broad.mit.edu 37 7 128528680 128528683 + RNA DEL ACAT ACAT - rs200124412 by1000genomes;alternate_allele TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 ACAT ACAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . KCP . . . . ACACACACATACA 6 2 0.33 4 0 0 16 0 0 CSMD1 64478 mdanderson.org 37 8 3326282 3326282 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_033225 exon12 c.C1513A p.Q505K CCGACTGCAGATG 45 3 0.07 36 0 0 0 0 MCPH1 79648 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 6302344 6302344 + Silent SNP G G A rs201084851 bycluster;by1000genomes TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd MCPH1_ENST00000344683,colon,carcinoma,+1,1 MCPH1_ENST00000344683 NM_001172574 exon8 c.G1101A p.P367P ACCTCCGAAGGAA 127 8 0.06 163 0 0 1 1 10 0 0.00 EGR3 1960 hgsc.bcm.edu;broad.mit.edu 37 8 22548865 22548865 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . EGR3 NM_004430 exon2 c.286delA p.N96fs CCAGTTGGAAGGG 121 11 0.09 124 0 0 33 1 0 0.00 GDF6 392255 mdanderson.org 37 8 97157137 97157137 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd GDF6,NS,carcinoma,0,1 GDF6 NM_001001557 exon2 c.G1022A p.R341H CCATGGCGACTGG 44 3 0.07 39 0 0 0 1 0 0 PHF20L1 51105 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133826993 133826993 + Missense_Mutation SNP C C T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . PHF20L1 NM_016018 exon10 c.C1042T p.R348C AAGGCTCGCAGCA 245 23 0.09 261 1 0.0038314176 129 14 2 0.14 MAFA 389692 mdanderson.org 37 8 144512464 144512464 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_201589 exon1 c.C113A p.A38D CGCTCGGCCTCGG 43 3 0.07 43 0 0 2 0 0.00 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 2596 2596 + RNA SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . AAGGTAGCATAAT 97 12 0.12 66 0 0 0 0 ATP6 0 hgsc.bcm.edu;broad.mit.edu 37 MT 9035 9035 + Missense_Mutation SNP T T C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . ENST00000361899 exon1 c.T509C p.L170P ACCTACTCATGCA 40 22 0.55 15 0 0 0 0 SUPT20HL1 0 bcgsc.ca 37 X 24382372 24382372 + RNA SNP A A G rs2695489 bycluster TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_001136234 exon1 c.A1495G p.I499V GCTGCTATTGCTG 224 24 0.11 218 8 0.0366972477 0 0 HUWE1 10075 broad.mit.edu 37 X 53622246 53622246 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . HUWE1 NM_031407 exon30 c.C3281A p.P1094Q GGTGTCGGTGCTG 101 4 0.04 97 0 0 724 1 0 0.00 AMER1 139285 broad.mit.edu 37 X 63412939 63412939 + Silent SNP T T C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_152424 exon2 c.A228G p.G76G GCTCCGTCCCCCT 110 3 0.03 129 0 0 0 0 CHM 1121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 85218961 85218961 + Silent SNP G G A novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_000390 exon5 c.C411T p.A137A CAGGAAGGCAGAA 125 33 0.26 101 0 0 1 0 0.00 RNF113A 7737 mdanderson.org 37 X 119005138 119005138 + Missense_Mutation SNP T T C novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . NM_006978 exon1 c.A439G p.K147E CCTCCTTGCCCCT 42 3 0.07 42 0 0 49 0 0.00 FLNA 0 broad.mit.edu 37 X 153595838 153595838 + Silent SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . FLNA NM_001456 exon5 c.C795A p.P265P GGCCTTGGGGAAC 70 4 0.06 70 0 0 373 11 0 0.00 NPRL3 8131 mdanderson.org 37 16 150464 150464 + Missense_Mutation SNP G G T novel TCGA-2G-AAFL-01A-21D-A42Y-10 TCGA-2G-AAFL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 333fc09a-ce23-4f10-a8b7-86fa54bd8184 a4aa42af-abd7-409c-a27c-12fbfe1801fd . . . . . . CCTCCAGCCAGCT 45 3 0.07 46 0 0 37 0 0.00