Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV NBPF10 100132406 hgsc.bcm.edu 37 1 145293535 145293535 + Missense_Mutation SNP C C G rs55936365 TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 NBPF10,NS,carcinoma,0,2 NBPF10 NM_001039703 exon1 c.C130G p.L44V TGTTTTCTAACTC 93 5 0.05 69 1 0.0144927536 0 2 0 0 PIP5K1A 8394 broad.mit.edu 37 1 151205142 151205142 + Missense_Mutation SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 PIP5K1A_ENST00000368888,NS,carcinoma,0,1 PIP5K1A NM_001135638 exon7 c.C602A p.A201E AAGAGGCGGAATT 85 4 0.05 82 0 0 61 1 9 0 0.00 . 0 broad.mit.edu 37 1 204363979 204363980 + RNA INS - - A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . . . . . GTTTTTCAAAAAA 8 3 0.38 5 0 0 0 0 DNAH14 127602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 225528369 225528369 + Silent SNP G G A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001373 exon67 c.G10365A p.E3455E ACTAGAGGAAAAA 277 71 0.26 293 0 0 0 0 EGLN1 54583 mdanderson.org 37 1 231557492 231557492 + Missense_Mutation SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_022051 exon1 c.G143A p.R48H TCCTGACGCTGGT 15 3 0.20 16 0 0 4 0 0.00 SCCPDH 51097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 246927615 246927615 + Missense_Mutation SNP A A T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_016002 exon10 c.A1058T p.K353M CAGATAAGAACAA 83 19 0.23 97 0 0 173 45 0.26 NET1 10276 mdanderson.org 37 10 5454763 5454763 + Silent SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001047160 exon1 c.C108A p.S36S CACCTCCGGGTCG 19 3 0.16 20 0 0 0 0 FRMD4A 55691 mdanderson.org 37 10 13698996 13698996 + Missense_Mutation SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_018027 exon22 c.G2593A p.A865T ACTGAGCCTTGAC 9 2 0.22 8 0 0 2 0 0.00 ATAD1 84896 mdanderson.org 37 10 89530769 89530769 + Silent SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_032810 exon7 c.T720C p.P240P GTCCTGAGGACGA 57 3 0.05 100 0 0 50 0 0.00 ATAD1 84896 hgsc.bcm.edu 37 10 89544257 89544257 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_032810 exon5 c.C553A p.Q185K ATGGTTGTAGCTT 98 4 0.04 126 0 0 29 0 0.00 ZRANB1 54764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 126631712 126631712 + Missense_Mutation SNP C C G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_017580 exon1 c.C650G p.P217R GATCACCTCCTGC 72 10 0.14 88 0 0 21 5 0.24 MUC6 4588 bcgsc.ca 37 11 1016871 1016871 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . MUC6 NM_005961 exon31 c.C5930A p.P1977H GAGAAGGGACTGC 393 12 0.03 459 10 0.0217864924 408 0 0 QSER1 79832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 32955965 32955965 + Missense_Mutation SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001076786 exon4 c.A2774G p.Q925R GAAATCAGGTTAC 156 38 0.24 167 0 0 1 1 1.00 CHST1 8534 mdanderson.org 37 11 45671900 45671900 + Missense_Mutation SNP C C T rs147129669 alternate_allele TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_003654 exon4 c.G574A p.V192M CCGCCACGGTCAG 22 2 0.09 20 0 0 11 0 0.00 DGKZ 8525 hgsc.bcm.edu 37 11 46394020 46394020 + Silent SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001105540 exon12 c.C1534A p.R512R AATCCCCGACAAG 100 4 0.04 135 0 0 34 0 0.00 SYVN1 84447 broad.mit.edu 37 11 64898172 64898173 + Frame_Shift_Ins INS - - GG novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . SYVN1 NM_032431 exon11 c.1065_1066insCC p.P355fs GGGGGCAGGGGGT 18 7 0.39 23 0 0 55 7 0 0.00 EPS8 2059 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 12 15803897 15803897 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_004447 exon14 c.C1294T p.R432X GGAATCGTGGAAC 461 25 0.05 259 0 0 9 0 0.00 HNRNPA1P10 664709 hgsc.bcm.edu;ucsc.edu 37 12 54676581 54676581 + RNA SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . . . . . TTCTTACAGGTGG 56 7 0.13 65 0 0 3 2 0.67 EP400 57634 broad.mit.edu;mdanderson.org 37 12 132527894 132527894 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . EP400 NM_015409 exon33 c.G6253T p.A2085S AAGTCCGCACAGG 78 4 0.05 101 0 0 370 4 0 0.00 SACS 26278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 23909053 23909053 + Missense_Mutation SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_014363 exon10 c.G8962T p.D2988Y TCATGTCTTCGTG 105 18 0.17 107 0 0 1 0 0.00 EDDM3B 64184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 21238469 21238469 + Missense_Mutation SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_022360 exon2 c.A160G p.M54V GTCCTCATGAGAG 189 23 0.12 230 0 0 0 0 PSME2 5721 mdanderson.org 37 14 24612675 24612675 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_002818 exon11 c.C663A p.S221R GTTGCTGCTGATG 96 4 0.04 99 1 0.0101010101 797 0 0.00 MAPKBP1 23005 mdanderson.org 37 15 42114620 42114620 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001128608 exon27 c.G3247T p.G1083W GCTCCAGGTGTGG 43 3 0.07 65 0 0 2 0 0.00 PLA2G4F 255189 broad.mit.edu 37 15 42439919 42439920 + Frame_Shift_Ins INS - - C rs139732075 bycluster;by1000genomes TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . PLA2G4F NM_213600 exon12 c.1101_1102insG p.R367fs CATGGCTCGGGTT 90 11 0.12 109 0 0 75 2 0 0.00 PIGQ 9091 hgsc.bcm.edu;bcgsc.ca 37 16 629151 629151 + Missense_Mutation SNP G G A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_148920 exon7 c.G1306A p.V436M CAGCGCGTGGACT 121 6 0.05 108 0 0 28 0 0.00 PKD1 5310 mdanderson.org 37 16 2152493 2152493 + Silent SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001009944 exon25 c.G9090A p.L3030L GGGCAGCAGCCCC 32 3 0.09 36 0 0 16 0 0.00 RPH3AL 9501 broad.mit.edu 37 17 171132 171133 + In_Frame_Ins INS - - CCG novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . RPH3AL NM_006987 exon4 c.152_153insCGG p.E51delinsAE TCCACCTCCGCCG 59 7 0.12 62 0 0 18 1 0 0.00 CLUH 23277 mdanderson.org 37 17 2595123 2595123 + Missense_Mutation SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_015229 exon24 c.G3604A p.V1202M GGGCCACGGCCTG 50 3 0.06 42 0 0 186 0 0.00 PITPNM3 83394 mdanderson.org 37 17 6358884 6358884 + Missense_Mutation SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_031220 exon20 c.G2699A p.R900H ATCATGCGCGAGT 34 3 0.09 35 0 0 0 0 ARSG 22901 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 66339910 66339910 + Silent SNP G G A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 ARSG,colon,carcinoma,+1,1 ARSG NM_001267727 exon3 c.G384A p.A128A GCAGGCGGGTTAC 117 6 0.05 100 0 0 1 1 0 0 RAB37 326624 mdanderson.org 37 17 72733227 72733227 + Missense_Mutation SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001163989 exon1 c.C79T p.R27W ACCCTGCGGCTCT 45 3 0.07 41 0 0 1 0 0.00 SLC38A10 124565 mdanderson.org 37 17 79257226 79257226 + Silent SNP G G T rs141775697 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001037984 exon4 c.C340A p.R114R ACAGCCGGGCAAA 59 3 0.05 52 0 0 21 0 0.00 MRI1 84245 mdanderson.org 37 19 13879176 13879176 + Silent SNP T T C novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_032285 exon3 c.T375C p.R125R CAGACGTGAAACG 55 3 0.05 58 0 0 16 0 0.00 PSG4 5672 mdanderson.org 37 19 43699297 43699297 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_002780 exon4 c.C838A p.P280T CAGGGAGGCTCTG 50 3 0.06 58 0 0 0 0 SYMPK 8189 broad.mit.edu 37 19 46321272 46321272 + Missense_Mutation SNP T T G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . SYMPK NM_004819 exon23 c.A3026C p.Y1009S CGGGGGTACATGG 86 19 0.22 78 12 0.1538461538 104 255 9 0.04 GRWD1 83743 mdanderson.org 37 19 48956276 48956276 + Silent SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_031485 exon7 c.C1335T p.S445S CATCAGCGTCTGA 58 3 0.05 63 0 0 109 0 0.00 AHCY 191 mdanderson.org 37 20 32868923 32868923 + Silent SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_000687 exon10 c.T1216C p.L406L TGGTCAACTTCAC 66 3 0.05 49 0 0 627 1 0.00 L3MBTL1 26013 broad.mit.edu 37 20 42169675 42169675 + Silent SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . L3MBTL1 NM_032107 exon22 c.A2430G p.K810K AGGAAAAGGCATC 145 4 0.03 132 0 0 105 11 0 0.00 ZNF512B 57473 mdanderson.org 37 20 62594604 62594604 + Silent SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_020713 exon12 c.C1812A p.A604A GGAGAAGGCAGCC 19 2 0.11 17 0 0 5 0 0.00 SOX18 54345 mdanderson.org 37 20 62680648 62680648 + Silent SNP G G A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_018419 exon1 c.C222T p.R74R TTCCCCGCGGCCG 43 3 0.07 36 0 0 20 0 0.00 BAGE 85319 broad.mit.edu 37 21 11058340 11058340 + RNA SNP A A C rs28617310 TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . . . . . TAAAGGAGAGAAA 207 8 0.04 206 1 0.0048543689 0 0 BAGE 85319 broad.mit.edu 37 21 11058348 11058348 + RNA SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . . . . . AGAAATCTCTTTA 180 7 0.04 174 1 0.0057471264 0 0 PHF21B 112885 broad.mit.edu;ucsc.edu;mdanderson.org 37 22 45279175 45279175 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . PHF21B NM_138415 exon13 c.G1387T p.E463X TCAACTCCAGGCA 38 5 0.13 41 0 0 61 2 0 0.00 VGLL4 9686 mdanderson.org 37 3 11606410 11606410 + Missense_Mutation SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001128219 exon3 c.T356C p.M119T AGGCTCATGGTGG 22 4 0.18 32 0 0 17 0 0.00 ZFYVE20 64145 mdanderson.org 37 3 15115315 15115315 + Missense_Mutation SNP C C T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_022340 exon14 c.G2329A p.A777T GCTTGGCCAGGGT 51 3 0.06 57 0 0 3 0 0.00 ZXDC 79364 mdanderson.org 37 3 126180459 126180459 + Silent SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_025112 exon6 c.C2046A p.P682P GGACTGGGGCAGC 140 5 0.04 139 1 0.0071942446 37 0 0.00 ATR 545 broad.mit.edu 37 3 142222247 142222247 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 ATR,colon,carcinoma,+1,1 ATR NM_001184 exon30 c.C5245A p.L1749M TAGACAGCTGACC 549 7 0.01 515 1 0.0019417476 285 1 2 0 0.00 N4BP2 55728 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 40154443 40154443 + Silent SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_018177 exon17 c.G5187T p.T1729T GATTACGGGGAGA 199 8 0.04 203 0 0 20 0 0.00 COL25A1 84570 mdanderson.org 37 4 110223132 110223132 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_032518 exon2 c.C44A p.P15H GATCTGGGCTCCC 33 3 0.09 27 0 0 1 0 0.00 TRAM1L1 133022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 118006336 118006336 + Missense_Mutation SNP G G A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_152402 exon1 c.C214T p.L72F AATAGAGGGACTT 114 19 0.17 181 0 0 0 0 PCDHA9 9752 mdanderson.org 37 5 140229869 140229869 + Missense_Mutation SNP G G C novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_031857 exon1 c.G1789C p.V597L CGCGCAGTGGACG 43 3 0.07 34 0 0 0 0 FAM196B 100131897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169309671 169309671 + Missense_Mutation SNP T T A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_001129891 exon2 c.A1232T p.D411V TGGAGGTCGCAGA 104 14 0.13 143 0 0 0 0 SSR1 6745 mdanderson.org 37 6 7313285 7313285 + Silent SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_003144 exon1 c.C69A p.G23G GGGGCCGCCTCGG 45 3 0.07 48 0 0 75 0 0.00 ITPR3 3710 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 33638313 33638313 + Missense_Mutation SNP C C T rs147317574 TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . ITPR3 NM_002224 exon19 c.C2401T p.R801C TTTGCCCGTCTCT 85 5 0.06 90 0 0 409 0 0 GTF2IRD2P1 0 broad.mit.edu 37 7 72667516 72667516 + RNA DEL A A - novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . . . . . TATGTCAAAAAAT 1005 7 0.01 880 0 0 0 0 SDC2 6383 mdanderson.org 37 8 97506502 97506502 + Missense_Mutation SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_002998 exon1 c.G3T p.M1I GAATATGCGGCGC 24 2 0.08 32 0 0 32 0 0.00 AGO2 27161 mdanderson.org 37 8 141551323 141551323 + Silent SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_012154 exon15 c.C1974A p.R658R CTTGAAGCGCGTG 71 4 0.06 82 0 0 12 0 0.00 TRPM6 140803 mdanderson.org 37 9 77359051 77359051 + Silent SNP G G T novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . . NM_017662 exon32 c.C5094A p.A1698A TAAGGAGGCTGAG 58 3 0.05 63 0 0 1 0 0.00 NUDT10 170685 bcgsc.ca 37 X 51075767 51075767 + Missense_Mutation SNP T T A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . NUDT10 . . . . AGCAGCTGCGTCG 260 20 0.08 154 2 0.012987013 28 12 0 0.00 HMGN5 79366 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 80370324 80370324 + Missense_Mutation SNP C C A novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . HMGN5 NM_030763 exon7 c.G673T p.D225Y TTACATCTTTCCC 329 11 0.03 256 0 0 29 32 0 0.00 ELF4 2000 broad.mit.edu 37 X 129215228 129215228 + Splice_Site SNP A A G novel TCGA-2G-AAFO-01A-31D-A42Y-10 TCGA-2G-AAFO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0182096a-fcfd-4c9a-837f-e329734c86f8 2a0fd75c-32f0-4393-a404-dd5568031036 . ELF4 NM_001421 exon3 c.75+2T>C . GGCCATACCTGGT 189 3 0.02 148 0 0 67 0 0