Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV KIF1B 23095 broad.mit.edu 37 1 10342466 10342466 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . KIF1B NM_183416 exon13 c.G1171A p.G391R TCCATGGGGTCCC 166 5 0.03 157 0 0 242 13 1 0.08 rescued with RNA-seq THEMIS2 9473 bcgsc.ca 37 1 28206532 28206532 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_004848 exon3 c.C613T p.R205W ATCCTGCGGCCCC 104 6 0.06 138 0 0 19 0 0.00 COL16A1 1307 mdanderson.org 37 1 32137261 32137261 + Splice_Site SNP C C A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001856 exon49 c.3106-1G>T . CGGACCCTGCAAA 87 4 0.05 94 0 0 7 0 0.00 PTPRF 5792 mdanderson.org 37 1 44085236 44085236 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_002840 exon28 c.G4924T p.E1642X GAGCTCGAGTTCA 45 3 0.07 56 0 0 252 0 0.00 SSBP3 23648 broad.mit.edu 37 1 54871665 54871665 + Missense_Mutation SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . SSBP3 NM_001009955 exon1 c.A17G p.K6R GAGCCTTTGCCTT 134 11 0.08 112 1 0.0089285714 65 177 0 0.00 ACADM 34 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 76228425 76228425 + Missense_Mutation SNP C C G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . ACADM NM_001127328 exon12 c.C1255G p.H419D CGTGAACACATTG 405 62 0.15 408 2 0.0049019608 50 98 19 0.19 SCAMP3 10067 mdanderson.org 37 1 155230121 155230121 + Missense_Mutation SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_005698 exon4 c.A388G p.T130A ACTTACTAGCTGT 84 4 0.05 46 0 0 313 9 0.03 ADORA1 134 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 203098167 203098167 + Silent SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001048230 exon2 c.C198T p.A66A CCTCGCCATCCTC 191 13 0.07 86 0 0 10 0 0.00 DUSP10 11221 broad.mit.edu 37 1 221879723 221879723 + Silent SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 DUSP10,NS,carcinoma,0,1 DUSP10 NM_007207 exon3 c.C897T p.G299G GGATGCGCCGCCC 221 6 0.03 177 0 0 64 1 9 0 0.00 KIF26B 55083 mdanderson.org 37 1 245851505 245851505 + Silent SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_018012 exon12 c.G5220T p.L1740L CCTCCTGGCCAGC 31 3 0.10 20 0 0 9 0 0.00 CAMK1D 57118 mdanderson.org 37 10 12595239 12595239 + Silent SNP A A G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 CAMK1D_ENST00000378847,NS,malignant_melanoma,+2,6 CAMK1D_ENST00000378847 NM_153498 exon2 c.A108G p.E36E TTCCGAAGTGGTT 49 3 0.06 74 0 0 2 6 2 0 0.00 DBX1 120237 mdanderson.org 37 11 20181777 20181777 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001029865 exon1 c.G94A p.A32T AAAATGCCGACTG 36 3 0.08 21 0 0 0 0 SLC1A2 6506 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 35440503 35440503 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_004171 exon1 c.C11T p.T4M CCTTCCGTAGATG 160 47 0.29 169 0 0 0 0 DLG2 1740 hgsc.bcm.edu 37 11 83544668 83544668 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 DLG2_ENST00000418306,NS,carcinoma,+1,8 DLG2_ENST00000418306 NM_001142699 exon17 c.C1711A p.Q571K GGATCTGGTCTCC 86 5 0.06 91 0 0 1 8 0 0 NOP2 4839 broad.mit.edu 37 12 6666318 6666318 + Missense_Mutation SNP C C A rs2534700 bycluster;byhapmap;alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . NOP2 NM_001258309 exon17 c.G2379T p.L793F CTCTGGCAACTGC 546 10 0.02 228 0 0 44 507 13 0.03 DDX12P 440081 bcgsc.ca 37 12 9578165 9578165 + RNA SNP C C G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . GGGACGCTGGCCT 430 71 0.17 144 2 0.0138888889 151 25 0.17 C12orf40 283461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 40076502 40076502 + Missense_Mutation SNP A A G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 C12orf40,NS,carcinoma,+1,1 C12orf40 NM_001031748 exon8 c.A776G p.Y259C CAGACTACATTAC 101 24 0.24 79 0 0 1 1 0 0 LRRK2 120892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 40757322 40757322 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_198578 exon48 c.C7147T p.L2383F GAAAAACTCTGTG 131 32 0.24 118 0 0 6 0 0.00 CLIP1 6249 mdanderson.org 37 12 122819222 122819222 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001247997 exon13 c.G2599A p.A867T AGACTGCCTCCTC 40 3 0.08 25 0 0 36 0 0.00 . 0 bcgsc.ca 37 12 126996133 126996133 + RNA SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . AAACCAGCAAATG 30 5 0.17 33 0 0 0 0 ATP8A2 51761 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 26133183 26133183 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . ATP8A2 NM_016529 exon14 c.G1336T p.A446S AGCATTGCCGGAG 71 7 0.10 90 0 0 181 0 0 . 0 broad.mit.edu 37 14 20146543 20146544 + RNA INS - - GTCCC novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . CTCAGCAGAACAG 71 8 0.11 44 0 0 0 0 CPNE6 9362 broad.mit.edu 37 14 24546820 24546820 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 CPNE6,NS,carcinoma,0,1 CPNE6 NM_006032 exon16 c.G1555A p.A519T GCACTCGCCAAGT 99 4 0.04 107 1 0.0093457944 40 1 8 0 0.00 RALGAPA1 253959 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 36194331 36194332 + Frame_Shift_Del DEL CT CT - novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 CT CT Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . RALGAPA1 NM_014990 exon14 c.1765_1766del p.589_589del CCGTGACTCTGAG 241 38 0.16 195 0 0 289 11 0 0.00 ZFYVE19 84936 mdanderson.org 37 15 41104995 41104995 + Silent SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001077268 exon7 c.C925T p.L309L AGACTGCTGGCTG 38 3 0.08 30 0 0 43 0 0.00 ONECUT1 3175 broad.mit.edu 37 15 53082011 53082011 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . ONECUT1 NM_004498 exon1 c.71delC p.P24fs TCGGCAGGGGCGG 6 2 0.33 4 0 0 48 1 0 0.00 . 0 broad.mit.edu 37 15 84957462 84957466 + RNA DEL GTGGC GTGGC - novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 GTGGC GTGGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . TGTAGGGTGGCAT 6 2 0.33 11 0 0 0 0 SLX4 84464 mdanderson.org 37 16 3639795 3639795 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_032444 exon12 c.C3844A p.L1282M CGGCCAGCCCGCT 38 3 0.08 50 0 0 11 0 0.00 ACSM3 6296 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 20796358 20796358 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_005622 exon8 c.C1072T p.P358S ATTACCCCTGACG 80 7 0.09 99 0 0 19 2 0.11 TGFB1I1 7041 mdanderson.org 37 16 31484827 31484827 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 TGFB1I1_ENST00000394863,NS,carcinoma,0,2 TGFB1I1_ENST00000394863 NM_001042454 exon2 c.C79T p.R27C AAAGAGCGCCCTG 46 3 0.07 60 0 0 0 2 54 0 0.00 COG4 25839 hgsc.bcm.edu 37 16 70515315 70515315 + Silent SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_015386 exon18 c.C2182A p.R728R TGTCTCGGATGGT 74 4 0.05 89 0 0 162 0 0.00 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 4016010 4016010 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_015113 exon5 c.C959T p.A320V CCTACAGCTACTG 118 8 0.07 121 0 0 8 0 0.00 MRPL45 84311 broad.mit.edu 37 17 36453192 36453192 + Missense_Mutation SNP T T G rs9890011 bycluster;by2hit2allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . MRPL45 NM_032351 exon1 c.T43G p.F15V TCGAGGTTTTTGG 93 14 0.15 69 1 0.0144927536 27 123 6 0.05 MRC2 9902 broad.mit.edu 37 17 60769610 60769610 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . MRC2 NM_006039 exon30 c.C4238T p.A1413V ACCCAGCGGCCCT 155 4 0.03 124 2 0.0161290323 126 244 0 0.00 CD79B 974 mdanderson.org 37 17 62007156 62007156 + Missense_Mutation SNP C C A rs148032848 alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 CD79B,colon,carcinoma,0,1 CD79B NM_001039933 exon4 c.G526T p.V176L TAGGCACGATGAT 26 2 0.08 19 0 0 0 1 15 0 0.00 . 100132166 bcgsc.ca 37 18 80204 80204 + RNA SNP A A C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . GGGGCCAAGTCCT 41 6 0.15 46 2 0.0434782609 1 0 0.00 AP3D1 8943 mdanderson.org 37 19 2121000 2121000 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001261826 exon14 c.G1342A p.V448M CCTTCACGCGGAT 38 3 0.08 33 0 0 160 0 0.00 LINGO3 645191 mdanderson.org 37 19 2291166 2291166 + Silent SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001101391 exon2 c.C610A p.R204R GCAGCCGCAGGGC 40 3 0.08 28 0 0 1 0 0.00 PNPLA6 10908 broad.mit.edu 37 19 7626396 7626396 + Missense_Mutation SNP G G A rs368661376 TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . PNPLA6 NM_001166111 exon34 c.G4076A p.R1359Q TTCTCCGGCAACG 82 5 0.06 54 0 0 163 69 0 0.00 ASNA1 439 mdanderson.org 37 19 12856212 12856212 + Missense_Mutation SNP G G T rs373752704 alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_004317 exon3 c.G331T p.V111L CTGGGCGTGGCGG 30 3 0.10 29 0 0 430 0 0.00 CPAMD8 27151 mdanderson.org 37 19 17004142 17004142 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_015692 exon42 c.C5576T p.A1859V GGCCCGGCTGTGA 15 2 0.13 22 0 0 3 0 0.00 MAG 4099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35800891 35800891 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_080600 exon8 c.G1346A p.R449H CATCGCGCAATGT 79 11 0.14 50 0 0 7 0 0.00 DHDH 27294 mdanderson.org 37 19 49438356 49438356 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_014475 exon2 c.G190T p.D64Y GCCAAGGACCCGA 33 3 0.09 24 0 0 0 0 ZIM3 0 broad.mit.edu 37 19 57649920 57649920 + Missense_Mutation SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . ZIM3 NM_052882 exon3 c.A62G p.E21G TGCCACTCCCCCT 90 4 0.04 98 0 0 107 0 0 KDM3A 55818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 86707433 86707433 + Silent SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001146688 exon16 c.T2460C p.P820P ATCTCCTCTAAAC 79 6 0.08 75 0 0 69 8 0.12 NCAPH 23397 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 2 97033084 97033084 + Silent SNP G G T rs149403246 alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_015341 exon15 c.G1971T p.A657A GACAGCGCTCTCC 121 5 0.04 94 0 0 121 0 0.00 NPAS2 4862 mdanderson.org 37 2 101587513 101587513 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_002518 exon12 c.G1117T p.A373S TCCGAGGCCCTCC 130 5 0.04 105 0 0 5 0 0.00 SH3RF3 344558 broad.mit.edu 37 2 110065794 110065794 + Missense_Mutation SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . SH3RF3 NM_001099289 exon8 c.T1997C p.I666T CGGCCATCCCCCT 337 5 0.01 265 4 0.0150943396 62 3 0 0.00 TTN 7273 mdanderson.org 37 2 179490019 179490019 + Silent SNP G G A rs55973744 bycluster;byfrequency;by1000genomes TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001267550 exon241 c.C44529T p.H14843H GTTGGCGTGAGTT 54 3 0.06 61 0 0 0.01 1 0 0.00 DNAH7 56171 mdanderson.org 37 2 196682528 196682528 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_018897 exon50 c.C9317A p.T3106N TCAGGGGTTATCA 109 5 0.05 64 0 0 3 0 0.00 C2orf62 375307 mdanderson.org 37 2 219227558 219227558 + Missense_Mutation SNP G G T rs201618489 by1000genomes;alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 C2orf62,NS,carcinoma,+1,1 C2orf62 NM_198559 exon6 c.G563T p.R188L GGCGGCGGATGGT 44 3 0.07 27 0 0 1 1 11 0 0.00 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 230668944 230668944 + Splice_Site SNP C C G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_004238 exon19 c.2426-1G>C . ATCCACCTATTAC 258 36 0.14 243 0 0 1 1 1.00 PDYN 5173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 1961480 1961480 + Missense_Mutation SNP T T G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001190898 exon4 c.A254C p.K85T ACCGACTTGCTCC 144 48 0.33 177 0 0 0 0 PLCB1 23236 mdanderson.org 37 20 8705341 8705341 + Silent SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_015192 exon16 c.C1620T p.G540G AGAAATGTCTAAT 71 4 0.06 77 0 0 9 0 0.00 . 0 broad.mit.edu 37 20 29572324 29572325 + RNA DEL AC AC - rs370232057 alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 AC AC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . ACACAAACACACA 9 3 0.33 8 0 0 0 0 TOP1 7150 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 39751878 39751894 + Frame_Shift_Del DEL ACCCAGCGGGAGAAGTT ACCCAGCGGGAGAAGTT - novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 ACCCAGCGGGAGAAGTT ACCCAGCGGGAGAAGTT Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . TOP1 NM_003286 exon21 c.2238_2254del p.746_752del AACAAAACCCAGC 94 18 0.19 129 0 0 71 317 0 0.00 SLC17A9 63910 mdanderson.org 37 20 61584208 61584208 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_022082 exon1 c.G26A p.R9H AGGCCCGCAGGGA 18 3 0.17 15 0 0 6 0 0.00 SLC7A4 6545 mdanderson.org 37 22 21383511 21383511 + Missense_Mutation SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_004173 exon5 c.G1741A p.V581M AATACACTGCAAG 29 3 0.10 48 0 0 29 0 0.00 SUN2 25777 broad.mit.edu 37 22 39132280 39132280 + Missense_Mutation SNP C C T rs200715757 bycluster;by1000genomes TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . SUN2 NM_001199579 exon18 c.G2209A p.A737T AGTGGGCGGGCTC 64 5 0.08 75 0 0 59 148 6 0.04 CAND2 23066 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 12856660 12856660 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . CAND2 NM_001162499 exon8 c.G1027A p.D343N TACAGCGATGACG 113 22 0.19 73 1 0.0136986301 138 22 1 0.05 . 645715 bcgsc.ca 37 3 39401174 39401174 + RNA SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . CCGTTCTGGTAAA 29 16 0.55 26 0 0 0 0 TEX264 51368 mdanderson.org 37 3 51737954 51737954 + Silent SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_015926 exon5 c.G864T p.R288R GTCACGGCTGGAC 46 3 0.07 31 0 0 168 0 0.00 ARMC8 25852 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 137942567 137942567 + Silent SNP C C T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . ARMC8 NM_001267041 exon5 c.C427T p.L143L GAGCTACTGTATA 99 17 0.17 83 1 0.0120481928 79 55 16 0.29 KCTD8 386617 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 44449883 44449883 + Missense_Mutation SNP C C G novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_198353 exon1 c.G658C p.V220L CGCGCACGGTGGT 29 9 0.31 29 0 0 0 0 BANK1 55024 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 102839288 102839288 + Missense_Mutation SNP C C A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_017935 exon7 c.C1148A p.A383E ACCCCGCACATAT 195 9 0.05 247 0 0 0 0 PHF17 79960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 129789057 129789057 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_199320 exon10 c.G1550T p.R517L TTAAACGGTCTGT 63 12 0.19 75 0 0 18 4 0.22 MDC1 9656 broad.mit.edu 37 6 30673315 30673315 + Silent SNP G G T rs149345627 bycluster;byfrequency;alternate_allele TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . MDC1 NM_014641 exon10 c.C3645A p.T1215T TCGGTCGGTGGAG 147 4 0.03 158 1 0.0063291139 218 79 0 0.00 MUC21 394263 broad.mit.edu 37 6 30954534 30954534 + Silent SNP T T A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 MUC21,NS,carcinoma,0,3 MUC21 NM_001010909 exon2 c.T582A p.T194T CAGCACTGCCACC 48 5 0.10 39 1 0.0256410256 98 3 0 0 BRD2 6046 mdanderson.org 37 6 32942516 32942516 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001113182 exon3 c.G307T p.V103L CAGCCTGTGGATG 35 3 0.09 38 0 0 206 0 0.00 MCM3 4172 mdanderson.org 37 6 52141940 52141940 + Silent SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_002388 exon8 c.C1225A p.R409R TAGCTCGGGGTGC 53 3 0.06 52 0 0 305 0 0.00 ULBP2 80328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 150267564 150267564 + Missense_Mutation SNP A A T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_025217 exon3 c.A406T p.S136C CACAGCAGTGGAT 84 11 0.13 170 0 0 0 0 . 2667 bcgsc.ca 37 7 48942827 48942827 + RNA SNP T T C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . ATGGACTTTTGAC 119 8 0.07 79 0 0 0 0 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . CCGGGGTCCTTGA 141 5 0.04 110 0 0 0 0 KIAA1324L 222223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 86577164 86577164 + Missense_Mutation SNP A A C novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001142749 exon3 c.T385G p.S129A CCAAGGAATAGGT 151 41 0.27 140 0 0 28 14 0.50 MUC17 140453 ucsc.edu 37 7 100680100 100680100 + Silent SNP G G A rs142682652 byfrequency TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . MUC17 NM_001040105 exon3 c.G5403A p.S1801S AACCTCGACTCTT 162 22 0.14 115 4 0.0347826087 804 0 0 MUC17 140453 ucsc.edu;bcgsc.ca 37 7 100680117 100680117 + Missense_Mutation SNP T T C rs147353603 bycluster;byfrequency TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . MUC17 NM_001040105 exon3 c.T5420C p.M1807T AAGGAATGACTCC 169 31 0.18 112 3 0.0267857143 804 0 0 MUC17 140453 mdanderson.org 37 7 100681345 100681345 + Missense_Mutation SNP T T G rs142097516 bycluster TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001040105 exon3 c.T6648G p.S2216R TCCTAGTGAAGGA 154 8 0.05 79 0 0 0 0 COL26A1 136227 broad.mit.edu 37 7 101194114 101194115 + RNA INS - - C rs34442683 bycluster;by1000genomes TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . . . . . ACCTGCTCCCCTT 21 16 0.76 6 0 0 0 0 CUX1 1523 mdanderson.org 37 7 101891810 101891810 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001202543 exon24 c.G4039T p.D1347Y GAGGGCGACAGCT 33 3 0.09 19 0 0 2 0 0.00 PPP2R2A 5520 mdanderson.org 37 8 26217714 26217714 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . . NM_001177591 exon5 c.G406T p.E136X ATCAGTGAAAGGG 45 3 0.07 50 0 0 120 0 0.00 ARFGEF1 10565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 68208839 68208839 + Missense_Mutation SNP G G A novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 ARFGEF1,NS,carcinoma,+1,1 ARFGEF1 NM_006421 exon5 c.C466T p.L156F CAGTAAGTAAAGC 97 20 0.21 97 0 0 1 1 10 3 0.30 ERCC6L 54821 broad.mit.edu 37 X 71425589 71425589 + Missense_Mutation SNP G G T novel TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . ERCC6L NM_017669 exon2 c.C3028A p.P1010T CTTCTGGTTCATC 107 5 0.05 63 0 0 98 50 0 0.00 CTAG2 30848 broad.mit.edu 37 X 153881676 153881676 + Silent SNP A A C rs370709312 TCGA-2G-AAFV-01A-11D-A42Y-10 TCGA-2G-AAFV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq af03ea8a-e355-49cc-bc41-4ff2e2920c39 db466af1-f94e-426c-96ca-b7273aa85239 . CTAG2 NM_020994 exon1 c.T114G p.G38G CGTGGCACCCGCC 92 35 0.38 40 19 0.475 88 0 0