Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV KIF17 57576 broad.mit.edu 37 1 21011461 21011461 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . KIF17 NM_020816 exon10 c.C2072A p.P691H ACGCCAGGCTCTG 201 5 0.02 222 0 0 130 6 0 0.00 PEF1 553115 hgsc.bcm.edu 37 1 32096374 32096374 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c PEF1,NS,carcinoma,+1,1 PEF1 NM_012392 exon5 c.G695A p.R232H GCAGAGCGTGGGC 42 2 0.05 69 1 0.0144927536 1 1 195 0 0.00 ZNF362 149076 mdanderson.org 37 1 33742069 33742069 + Missense_Mutation SNP C C A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_152493 exon4 c.C223A p.P75T CCGGCACCCGCCG 24 3 0.13 28 0 0 11 0 0.00 RSBN1 54665 broad.mit.edu 37 1 114354926 114354926 + Frame_Shift_Del DEL C C - novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . RSBN1 NM_018364 exon1 c.109delG p.A37fs CGACCGCCCCCCC 11 3 0.27 19 0 0 71 1 0 0.00 FCRL2 79368 mdanderson.org 37 1 157745582 157745582 + Missense_Mutation SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_030764 exon2 c.C35T p.A12V GTGACTGCATCTG 43 3 0.07 35 0 0 0 0 SHOC2 8036 mdanderson.org 37 10 112724386 112724386 + Silent SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001269039 exon1 c.G270T p.V90V AGAGGTGATTAAA 118 5 0.04 159 0 0 30 0 0.00 MUC2 4583 mdanderson.org 37 11 1093324 1093324 + Missense_Mutation SNP G G A rs201143282 TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.G5143A p.G1715S CCCACCGGCACAC 32 3 0.09 36 1 0.0277777778 0 2 2 0 0.00 MUC2 4583 mdanderson.org 37 11 1093346 1093346 + Missense_Mutation SNP C C T rs371050870 TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_002457 exon30 c.C5165T p.T1722I CCCCGACACCCAT 36 5 0.14 48 1 0.0208333333 6 2 0.33 AHNAK 79026 hgsc.bcm.edu 37 11 62294188 62294188 + Missense_Mutation SNP T T G novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c AHNAK,mucosal,malignant_melanoma,0,2 AHNAK NM_001620 exon5 c.A7701C p.L2567F CATCTTTAACTTA 154 8 0.05 214 0 0 0 2 94 0 0.00 FAM86C2P 645332 bcgsc.ca 37 11 67560715 67560715 + RNA SNP C C T rs184691350 bycluster TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . GGGAAACAGTTTC 269 22 0.08 279 11 0.0394265233 9 0 0.00 HTR3B 9177 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 113775694 113775694 + Silent SNP C C A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . HTR3B NM_006028 exon1 c.C39A p.I13I CTGCATCCTGGTG 77 33 0.43 122 1 0.0081967213 50 0 0 OR10G9 219870 mdanderson.org 37 11 123894601 123894601 + Silent SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001001953 exon1 c.G882T p.V294V GGAGGTGAAGAAA 30 3 0.10 98 0 0 0 0 WBP11 51729 broad.mit.edu 37 12 14947586 14947586 + Silent SNP A A G novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c WBP11,right_lower_lobe,carcinoma,0,2 WBP11 NM_016312 exon7 c.T606C p.P202P AGGGGGAGGGCCA 588 9 0.02 220 2 0.0090909091 66 2 566 1 0.00 SPRYD3 84926 broad.mit.edu 37 12 53471008 53471009 + Missense_Mutation DNP GC GC AG novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 GC GC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . SPRYD3 NM_032840 exon2 c.G60C p.H58Y GGTAGTGCAGGTT 110 4 0.04 106 0 0 29 64 0 0.00 PPFIA2 8499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 81760903 81760903 + Missense_Mutation SNP T T A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c PPFIA2,NS,carcinoma,-1,1 PPFIA2 NM_001220476 exon13 c.A1529T p.E510V AAAGATTCTTCAA 501 107 0.21 495 0 0 -1 1 0 0 . 0 broad.mit.edu 37 12 110868215 110868216 + RNA DEL GT GT - rs113592903 bycluster;by1000genomes;alternate_allele TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 GT GT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . GTGTGCGTGTGTG 12 5 0.42 8 0 0 0 0 CIT 11113 mdanderson.org 37 12 120128070 120128070 + Silent SNP G G C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c CIT_ENST00000392521,axilla,malignant_melanoma,-2,6 CIT_ENST00000392521 NM_001206999 exon47 c.C6072G p.P2024P CCGGCCGGGGGAC 17 2 0.12 12 0 0 -2 6 40 0 0.00 TCTN2 79867 mdanderson.org 37 12 124156143 124156143 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001143850 exon2 c.G172T p.V58L CTGGCAGTGCTGC 68 4 0.06 46 0 0 47 0 0.00 RB1 5925 broad.mit.edu 37 13 48947559 48947559 + Silent SNP C C A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . RB1 NM_000321 exon12 c.C1146A p.I382I CACTATCCAACAA 334 6 0.02 450 1 0.0022222222 1068 29 1 0.03 CLDN10 9071 broad.mit.edu 37 13 96085990 96085990 + Translation_Start_Site SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . CLDN10 . . . . ACATCCGCTGGCT 40 3 0.08 51 1 0.0196078431 70 0 0 TM9SF2 9375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 100192991 100192991 + Silent SNP G G T rs149415928 alternate_allele TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_004800 exon8 c.G852T p.A284A ATGGGCGTCTAGA 160 74 0.46 211 0 0 226 105 0.46 ING1 3621 mdanderson.org 37 13 111366533 111366533 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_198219 exon1 c.G37T p.V13L CACCTGGTGAACT 34 3 0.09 55 0 0 21 0 0.00 ADAM21 8747 bcgsc.ca 37 14 70924643 70924643 + Missense_Mutation SNP T T C rs78114303 bycluster;by1000genomes TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . ADAM21 NM_003813 exon2 c.T427C p.Y143H CTCACTTATGAAA 174 13 0.07 144 3 0.0208333333 181 0 0 HEATR4 399671 broad.mit.edu 37 14 73989219 73989219 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c HEATR4,colon,carcinoma,0,1 HEATR4 NM_203309 exon2 c.G638A p.R213H GCTGTGCGCTCGT 156 5 0.03 114 0 0 126 1 1 0 0.00 MIR299 407023 mdanderson.org 37 14 101490191 101490191 + RNA SNP C C G novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . CCGCTTCTTGGTA 325 9 0.03 269 0 0 0 0 PLA2G4F 255189 broad.mit.edu 37 15 42436300 42436300 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c PLA2G4F,NS,carcinoma,-1,2 PLA2G4F NM_213600 exon18 c.G2018A p.R673Q CAGTCCCGCATGG 74 3 0.04 77 0 0 75 2 1 0 0.00 ZNF609 23060 mdanderson.org 37 15 64970351 64970351 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_015042 exon5 c.G3439T p.A1147S TATCCTGCCAAGT 46 3 0.07 65 0 0 28 0 0.00 AXIN1 8312 mdanderson.org 37 16 347728 347728 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_003502 exon6 c.C1778A p.A593D CTGTGGGCGAGGC 33 3 0.09 29 0 0 62 0 0.00 CRAMP1L 57585 mdanderson.org 37 16 1717336 1717336 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_020825 exon16 c.G3037T p.G1013C CTGCAGGGCTCCG 46 3 0.07 62 1 0.0161290323 12 0 0.00 IGFALS 3483 broad.mit.edu;mdanderson.org 37 16 1841105 1841105 + Silent SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . IGFALS NM_001146006 exon2 c.G1428A p.E476E GTCGAGCTCCAGC 13 3 0.23 27 0 0 29 10 1 0.10 THAP11 57215 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 67876460 67876460 + Translation_Start_Site SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . THAP11 NM_020457 exon1 c.G3T p.M1I AGCCATGCCTGGC 24 10 0.42 49 0 0 27 22 12 0.55 NFATC3 4775 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 68119617 68119617 + Silent SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_173163 exon1 c.G33A p.E11E CGACGAGCTCGAC 22 8 0.36 40 0 0 3 1 0.33 AP1G1 164 broad.mit.edu;mdanderson.org 37 16 71805154 71805154 + Splice_Site SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . AP1G1 NM_001030007 exon5 c.C470A p.A157E AGTGCTGCCTATG 68 5 0.07 96 0 0 83 22 0 0.00 LOC100506713 0 mdanderson.org 37 17 6905930 6905930 + RNA SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . CAGCAAGTCCCGG 19 2 0.11 22 0 0 12 0 0.00 TMEM102 284114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7339839 7339839 + Missense_Mutation SNP G G C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_178518 exon3 c.G541C p.E181Q AGCGAAGAAAGTT 119 49 0.41 145 0 0 29 13 0.45 MRPL45P2 0 broad.mit.edu 37 17 45567245 45567246 + RNA INS - - A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . CCATCTCAAAAAA 6 3 0.50 8 0 0 0 0 R3HDM4 91300 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 900917 900917 + Silent SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_138774 exon4 c.G387A p.E129E CTCCTGCTCCTCC 110 6 0.05 156 0 0 151 16 0.11 CHAF1A 10036 mdanderson.org 37 19 4428887 4428887 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_005483 exon8 c.G1604T p.S535I TTAACAGGTCAGA 57 3 0.05 69 0 0 67 0 0.00 RHPN2 85415 hgsc.bcm.edu 37 19 33517507 33517507 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c RHPN2,face,carcinoma,0,2 RHPN2 NM_033103 exon3 c.G217A p.V73M GCCGCACTTGCTC 22 3 0.14 21 1 0.0476190476 0 2 61 0 0.00 LRP3 4037 mdanderson.org 37 19 33696583 33696583 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_002333 exon5 c.G907T p.G303C CGGCTGGGCTATG 20 2 0.10 33 0 0 58 0 0.00 SIGLEC9 27180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51628989 51628989 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001198558 exon2 c.C557T p.S186F CCGTGTCCCCCCT 50 18 0.36 65 0 0 2 0 0.00 MFSD2B 388931 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 24246462 24246462 + Silent SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001080473 exon12 c.G1179A p.L393L CATGCTGCCAGAC 212 18 0.08 105 0 0 0 0 EGR4 1961 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 73519001 73519001 + Missense_Mutation SNP T T A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001965 exon2 c.A1354T p.T452S AAGGGGTGGGCGG 14 8 0.57 23 0 0 0 0 FAHD2CP 0 broad.mit.edu 37 2 96687429 96687429 + RNA DEL C C - novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . GCCCTGCACATAG 19 10 0.53 37 2 0.0540540541 1 0 0.00 TMEM131 23505 mdanderson.org 37 2 98418952 98418952 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_015348 exon24 c.C2590A p.Q864K TAAACTGAACATA 119 5 0.04 177 0 0 41 0 0.00 TANC1 85461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 159992709 159992709 + Silent SNP C C G rs375201296 alternate_allele TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c TANC1,NS,carcinoma,0,2 TANC1 NM_033394 exon5 c.C264G p.P88P AGGTCCCGTCAGG 44 9 0.20 62 0 0 0 2 12 6 0.50 IFIH1 64135 broad.mit.edu;mdanderson.org 37 2 163174366 163174366 + Splice_Site SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . IFIH1 NM_022168 exon1 c.G452A p.R151Q CCTACCCGGTTTC 58 3 0.05 82 0 0 102 43 4 0.09 RAPH1 65059 broad.mit.edu 37 2 204312708 204312708 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . RAPH1 NM_203365 exon14 c.C1763A p.S588X GATCCCGATTTAA 127 3 0.02 132 0 0 118 15 0 0.00 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 230650472 230650472 + Splice_Site SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_004238 exon34 c.4869+1G>A . AGCTCACCTCATT 78 43 0.55 79 0 0 15 15 1.00 FRG1B 284802 bcgsc.ca;mdanderson.org 37 20 29633902 29633902 + Missense_Mutation SNP C C A rs145072022 TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . FRG1B . . . . AGAGAACCAAATT 256 12 0.05 265 3 0.0113207547 181 28 0 0.00 RBM39 9584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34300982 34300982 + Missense_Mutation SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_184234 exon12 c.C1133T p.A378V TGTAGAGCTTGCT 90 38 0.42 88 0 0 429 139 0.32 TCFL5 10732 bcgsc.ca 37 20 61488884 61488884 + Silent SNP T T C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . TCFL5 NM_006602 exon4 c.A1101G p.E367E GGCACCTTCGCCC 169 6 0.04 174 0 0 43 72 0 0.00 ZGPAT 84619 mdanderson.org 37 20 62364705 62364705 + Splice_Site SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c ZGPAT,NS,carcinoma,+1,1 ZGPAT NM_001083113 exon3 c.718+1G>T . TCACCGGTGAGGC 48 3 0.06 34 0 0 1 1 3 0 0.00 ANKRD30BP2 149992 hgsc.bcm.edu 37 21 14417695 14417695 + RNA SNP T T C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . TTAGATTATACAG 131 25 0.19 101 0 0 0 0 SAMSN1-AS1 0 broad.mit.edu 37 21 15955849 15955850 + RNA INS - - A rs202144398 by1000genomes TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . TGGCAATAAAAAA 55 7 0.13 31 0 0 0 0 TMPRSS15 5651 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 19666630 19666630 + Missense_Mutation SNP C C T rs202100185 bycluster;by1000genomes TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_002772 exon21 c.G2443A p.V815I TGCTGACGAGAGA 203 11 0.05 155 0 0 0.001 0 0 B3GALT5 10317 broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 41032933 41032933 + Silent SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . B3GALT5 NM_033170 exon3 c.G447A p.A149A TCAGGCGGCGTTT 205 8 0.04 158 0 0 40 7 2 0.29 rescued with RNA-seq MN1 4330 hgsc.bcm.edu 37 22 28193690 28193690 + Missense_Mutation SNP T T C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_002430 exon1 c.A2842G p.R948G TGTCCCTTTTTCT 73 4 0.05 101 0 0 16 0 0.00 TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 28559107 28559108 + Missense_Mutation DNP CA CA TG novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001145418 exon6 c.T1413C p.A472T CCTCTGCAGCCCG 58 28 0.48 81 0 0 3 0 0.00 CELSR1 9620 mdanderson.org 37 22 46832126 46832126 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_014246 exon4 c.C4467A p.H1489Q GAAGTCGTGCTTC 51 3 0.06 65 0 0 28 0 0.00 EFHB 151651 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 19975292 19975292 + Silent SNP T T A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_144715 exon1 c.A219T p.G73G TTCTAATCCCATT 373 29 0.08 314 0 0 4 0 0.00 WNT5A 7474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 55504144 55504144 + Silent SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c WNT5A,NS,carcinoma,0,1 WNT5A NM_003392 exon5 c.C1119T p.I373I GTCCACGATCTCC 150 19 0.13 135 0 0 0 1 22 4 0.18 FLNB 2317 broad.mit.edu 37 3 58098020 58098020 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . FLNB NM_001457 exon18 c.C2720T p.T907M CTCACACGGTTAA 168 4 0.02 144 0 0 430 84 3 0.04 EPHA3 2042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 89480495 89480495 + Missense_Mutation SNP G G C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_005233 exon13 c.G2332C p.A778P GAAGCTGCTTATA 116 54 0.47 163 0 0 51 27 0.53 ABTB1 80325 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 127395400 127395400 + Missense_Mutation SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_172027 exon6 c.G502A p.A168T TTTGGGGCCCTGC 144 9 0.06 118 0 0 40 2 0.05 SLC30A9 10463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 41992712 41992712 + Missense_Mutation SNP G G C novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_006345 exon1 c.G44C p.W15S GTAGCTGGTCCTC 67 33 0.49 80 0 0 40 25 0.63 LIN54 132660 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 83867529 83867529 + Missense_Mutation SNP C C A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . LIN54 NM_194282 exon5 c.G1050T p.Q350H TTGAATCTGCTGG 170 8 0.05 197 0 0 50 15 0 0.00 TENM3 55714 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 183600887 183600887 + Silent SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001080477 exon7 c.G1395A p.T465T TGAGACGGAGAGA 113 12 0.11 151 1 0.0066225166 12 0 0.00 ADAMTS2 9509 mdanderson.org 37 5 178564853 178564853 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_014244 exon12 c.G1868A p.R623H TCCTCGCGGAAGT 40 3 0.08 40 0 0 17 0 0.00 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12125357 12125357 + Missense_Mutation SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_002114 exon4 c.G5329A p.V1777M ACAGACGTGAGAC 155 16 0.10 160 0 0 17 2 0.12 LY6G5B 58496 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 31639021 31639021 + Missense_Mutation SNP C C G novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_021221 exon2 c.C147G p.I49M TACCATCAGCAGC 182 9 0.05 215 0 0 11 1 0.09 FRS3 10817 mdanderson.org 37 6 41739127 41739127 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_006653 exon7 c.C709A p.P237T GGCCTGGCTGCAA 47 3 0.06 54 0 0 9 0 0.00 TDRD6 221400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 46659709 46659709 + Missense_Mutation SNP G G A novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001168359 exon1 c.G3844A p.G1282R AAAATAGGAGATT 172 32 0.19 227 0 0 0 0 AP5Z1 9907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 4830438 4830438 + Silent SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_014855 exon16 c.C2073T p.P691P CCTGCCCAGGTGT 56 12 0.21 36 0 0 117 25 0.21 NUDCD3 23386 mdanderson.org 37 7 44530025 44530025 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_015332 exon1 c.C175A p.Q59K AGGCCTGCGCGGC 28 3 0.11 19 0 0 149 0 0.00 . 0 broad.mit.edu 37 7 76684443 76684447 + RNA DEL AGAGT AGAGT - rs71273979 alternate_allele TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 AGAGT AGAGT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . GTACACAGAGTAA 74 12 0.16 37 3 0.0810810811 0 0 VGF 7425 mdanderson.org 37 7 100807777 100807777 + Silent SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_003378 exon2 c.C348A p.T116T GGTCTCGGTCAGC 25 3 0.12 15 0 0 10 0 0.00 CALU 813 bcgsc.ca;mdanderson.org 37 7 128409204 128409204 + Missense_Mutation SNP C C T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . CALU NM_001199671 exon8 c.C955T p.R319W TTAGTACGGCATG 107 5 0.05 85 0 0 42 509 0 0.00 PRSS3P2 154754 hgsc.bcm.edu 37 7 142478944 142478944 + RNA SNP G G A rs377675720 TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . . . . . CCTGCCGTTCTTG 49 5 0.10 18 0 0 0 0 GSDMD 79792 mdanderson.org 37 8 144644256 144644256 + Missense_Mutation SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_001166237 exon11 c.G951T p.E317D CCTGGAGGGGGTG 29 3 0.10 13 1 0.0769230769 33 0 0.00 OPLAH 26873 mdanderson.org 37 8 145113441 145113441 + Silent SNP G G T novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . . NM_017570 exon6 c.C741A p.R247R CACGTAGCGCTGG 18 3 0.17 22 0 0 12 0 0.00 ARHGAP39 80728 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 145806589 145806590 + Frame_Shift_Ins INS - - CACTCACC novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . ARHGAP39 NM_025251 exon4 c.153_154insGGTGAGTG p.C51fs CCACACGCACTCA 210 18 0.09 160 0 0 80 18 0 0.00 ZMYM3 9203 broad.mit.edu 37 X 70472909 70472909 + Missense_Mutation SNP A A G novel TCGA-2G-AAFZ-01A-11D-A42Y-10 TCGA-2G-AAFZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09 2499651e-d997-4ae7-bad7-8945ce31b25c . ZMYM3 NM_005096 exon2 c.T197C p.L66P TTTTCCAGGCCAG 410 9 0.02 208 0 0 137 66 0 0.00