Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MORN1 79906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 2252853 2252853 + Missense_Mutation SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_024848 exon14 c.G1463A p.S488N GTGCAGCTGTGGG 37 15 0.41 63 0 0 6 6 1.00 ECE1 1889 mdanderson.org 37 1 21585201 21585201 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001397 exon6 c.C747A p.N249K GTTGCTGTTGGAG 105 5 0.05 111 0 0 71 0 0.00 COL8A2 1296 broad.mit.edu;mdanderson.org 37 1 36565807 36565807 + Translation_Start_Site SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . COL8A2 NM_005202 exon1 c.C37A p.L13M GCAGCAGCAGCAG 51 3 0.06 50 0 0 41 6 0 0.00 CSF1 1435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110459933 110459933 + Missense_Mutation SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_172210 exon4 c.C244T p.L82F TGCTACCTTAAGA 77 25 0.32 88 0 0 18 8 0.44 OVGP1 5016 bcgsc.ca 37 1 111957533 111957533 + Silent SNP C C T rs112145355 bycluster TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . OVGP1 NM_002557 exon11 c.G1590A p.Q530Q CACAGACTGATGA 30 5 0.17 100 1 0.01 177 0 0 CELF3 11189 hgsc.bcm.edu 37 1 151678722 151678722 + Silent SNP T T C novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a CELF3,caecum,carcinoma,0,1 CELF3 NM_007185 exon10 c.A1104G p.Q368Q CTGCTGTTGCTGC 35 3 0.09 40 1 0.025 0 1 0 0 RUSC1 23623 broad.mit.edu 37 1 155292770 155292770 + Silent SNP A A C novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . RUSC1 NM_001105204 exon2 c.A1206C p.P402P GCCCCCACCCCCG 60 24 0.40 24 8 0.3333333333 85 1 0 0.00 METTL13 51603 broad.mit.edu 37 1 171761355 171761355 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . METTL13 NM_015935 exon6 c.G1673T p.S558I TCGCCAGCTTGGC 161 4 0.02 99 0 0 67 51 0 0.00 XPR1 9213 broad.mit.edu 37 1 180756959 180756959 + Silent SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . XPR1 NM_001135669 exon3 c.A192G p.K64K TGAAAAAGAACTT 540 5 0.01 381 0 0 76 20 0 0.00 RGS7 6000 broad.mit.edu 37 1 240975327 240975327 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a RGS7_ENST00000366565,NS,carcinoma,0,2 RGS7 NM_002924 exon14 c.C973T p.Q325X CCCTCTGCTGGCT 137 4 0.03 96 0 0 308 2 5 0 0.00 BEND7 222389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 13541880 13541880 + Missense_Mutation SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001100912 exon2 c.G190A p.V64M TCCACACACCACG 135 40 0.30 149 0 0 5 0 0.00 NRAP 4892 mdanderson.org 37 10 115417240 115417240 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001261463 exon4 c.C349A p.L117M TTGCCAGTGGCTG 57 3 0.05 65 0 0 0 0 TRPM5 29850 mdanderson.org 37 11 2434720 2434720 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_014555 exon13 c.C1989A p.N663K GATGAGGTTGGTA 125 6 0.05 122 0 0 0 0 OR51V1 283111 mdanderson.org 37 11 5221498 5221498 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001004760 exon1 c.C433A p.L145M TAGTCAGGATGGA 48 3 0.06 62 0 0 0 0 TAF10 6881 mdanderson.org 37 11 6633037 6633037 + Missense_Mutation SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_006284 exon2 c.C245T p.A82V CCACCCGCCGACA 42 3 0.07 50 0 0 74 0 0.00 LOC440040 0 broad.mit.edu 37 11 49831247 49831258 + RNA DEL TTTCTTATTTAT TTTCTTATTTAT - rs63365360 alternate_allele TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 TTTCTTATTTAT TTTCTTATTTAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . . . . . TCTTTCTTTCTTA 9 3 0.33 8 0 0 0 0 FLRT1 23769 broad.mit.edu;mdanderson.org 37 11 63884330 63884330 + Silent SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . FLRT1 NM_013280 exon2 c.G591A p.P197P GCTGCCGCACACG 39 3 0.08 31 0 0 46 2 0 0.00 RPS6KA4 8986 mdanderson.org 37 11 64135945 64135945 + Silent SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_003942 exon11 c.G1206T p.S402S GGACTCGCCCTTC 43 3 0.07 43 0 0 25 0 0.00 C11orf65 160140 hgsc.bcm.edu;broad.mit.edu 37 11 108256666 108256666 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_152587 exon8 c.C768A p.N256K CGAAGAGTTGCTT 95 4 0.04 126 0 0 0 0 HEPACAM 220296 mdanderson.org 37 11 124793237 124793237 + Missense_Mutation SNP T T C novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_152722 exon4 c.A802G p.R268G CAGACCTTTTGGA 31 3 0.10 24 0 0 0 0 SLC2A14 144195 broad.mit.edu 37 12 7982479 7982479 + Silent SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . SLC2A14 NM_153449 exon6 c.C465T p.C155C GAGTCCGCAGAAG 793 6 0.01 270 0 0 78 0 0 HECTD4 283450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 112622476 112622476 + Missense_Mutation SNP T T C novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001109662 exon61 c.A9892G p.I3298V TGTAGATCTCGTC 81 16 0.20 76 0 0 20 6 0.30 VPS37B 79720 broad.mit.edu;mdanderson.org 37 12 123351821 123351821 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . VPS37B NM_024667 exon4 c.C700A p.P234T GGTACGGCACGGC 67 4 0.06 47 0 0 26 16 0 0.00 TRIM13 10206 hgsc.bcm.edu 37 13 50588549 50588549 + RNA SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . . . . . ATGTATATATAGA 59 6 0.10 61 0 0 2 0 0.00 ARHGAP11A 9824 broad.mit.edu 37 15 32915726 32915726 + Missense_Mutation SNP C C A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a ARHGAP11A,NS,carcinoma,0,2 ARHGAP11A NM_199357 exon3 c.C234A p.D78E AGAAGACCATATT 266 4 0.02 240 1 0.0041666667 84 2 13 0 0.00 LMAN1L 79748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75111137 75111137 + Silent SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_021819 exon5 c.C576T p.T192T GATCACCTACTGG 109 22 0.20 75 0 0 1 0 0.00 CASKIN1 57524 mdanderson.org 37 16 2230285 2230285 + Silent SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_020764 exon18 c.C3084A p.P1028P GGGAGTGGGGTGG 46 3 0.07 31 0 0 2 0 0.00 RRN3 54700 broad.mit.edu 37 16 15188060 15188060 + Missense_Mutation SNP G G A rs201504364 bycluster TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a RRN3,NS,carcinoma,0,3 RRN3 NM_018427 exon1 c.C31T p.P11S CTCCCGGCAAACG 96 5 0.05 59 1 0.0169491525 36 3 34 0 0.00 ITPRIPL2 162073 mdanderson.org 37 16 19126187 19126187 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001034841 exon1 c.G404T p.R135L CTGGCCGCGCCCG 35 3 0.09 53 0 0 30 0 0.00 RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a RRAD,NS,carcinoma,0,6 RRAD NM_001128850 exon5 c.C833A p.A278E CGCTTCGCCTTTT 197 11 0.06 110 2 0.0181818182 31 6 60 0 0.00 SPIRE2 84501 mdanderson.org 37 16 89925692 89925692 + Silent SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_032451 exon9 c.A1392G p.P464P CCCCCCAGGAGGG 51 3 0.06 25 0 0 4 0 0.00 TRPV3 162514 broad.mit.edu 37 17 3438998 3438998 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . TRPV3 NM_001258205 exon7 c.C653A p.A218E TTCAGCGCCGTCT 82 10 0.12 57 0 0 85 0 0 GUCY2D 3000 mdanderson.org 37 17 7918715 7918715 + Missense_Mutation SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_000180 exon15 c.G2839A p.A947T CACGCGGCAGAGA 43 3 0.07 30 0 0 0 0 ALDH3A1 218 mdanderson.org 37 17 19642952 19642952 + Missense_Mutation SNP G G A rs2228100 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001135168 exon7 c.C985T p.P329S TCACCGGGGACTG 80 3 0.04 57 0 0 5 0 0.00 KRTAP2-4 85294 hgsc.bcm.edu 37 17 39221816 39221816 + Nonsense_Mutation SNP C C T rs200049107 TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a KRTAP2-4,trunk,malignant_melanoma,0,1 KRTAP2-4 NM_033184 exon1 c.G282A p.W94X GGTGGCCCAGCAG 17 8 0.47 9 1 0.1111111111 0 1 0 0 RAB12 201475 mdanderson.org 37 18 8609872 8609872 + Silent SNP C C A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a RAB12,NS,carcinoma,0,1 RAB12 NM_001025300 exon1 c.C147A p.G49G TATCGGCTCCCGC 108 12 0.11 102 4 0.0392156863 0 1 32 2 0.06 MBD1 4152 mdanderson.org 37 18 47800013 47800013 + Missense_Mutation SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a MBD1_ENST00000457839,NS,carcinoma,0,5 MBD1_ENST00000457839 NM_001204137 exon13 c.T1442C p.L481P AACACAAGGTCAG 38 3 0.08 37 0 0 0 5 41 0 0.00 CXXC1 30827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 47810855 47810855 + Silent SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001101654 exon9 c.C1110A p.A370A GTCCTTGGCATCA 59 5 0.08 41 0 0 45 0 0.00 AZU1 566 mdanderson.org 37 19 830737 830737 + Missense_Mutation SNP C C A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001700 exon4 c.C390A p.S130R CAGCAGCGTGACG 12 2 0.17 23 0 0 1 0 0.00 APBA3 9546 broad.mit.edu 37 19 3754245 3754245 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . APBA3 NM_004886 exon4 c.C710A p.P237Q GTGGGCGGGTTCC 174 3 0.02 192 1 0.0052083333 28 26 0 0.00 CACNA1A 773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13423558 13423558 + Silent SNP G G T rs372090886 alternate_allele TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001127221 exon12 c.C1596A p.S532S CATTTCGGACATA 30 11 0.37 58 0 0 1 1 1.00 ATP13A1 57130 mdanderson.org 37 19 19765412 19765412 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_020410 exon13 c.C1753A p.L585I CCACGAGGGTGCC 48 3 0.06 50 0 0 51 0 0.00 ZNF493 284443 mdanderson.org 37 19 21587955 21587955 + Missense_Mutation SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_145326 exon2 c.G55A p.A19T GATGTGGCCATAG 60 3 0.05 72 0 0 8 0 0.00 ZNF729 100287226 hgsc.bcm.edu 37 19 22499502 22499502 + Nonsense_Mutation SNP A A T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001242680 exon4 c.A3283T p.K1095X AAACATAAGGTAA 37 15 0.41 43 0 0 2 0 0.00 ATP4A 495 broad.mit.edu;mdanderson.org 37 19 36041807 36041807 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . ATP4A NM_000704 exon21 c.C3008A p.P1003H GGCAGGGGGACCA 87 6 0.07 89 0 0 123 0 0 PAPL 0 mdanderson.org 37 19 39589681 39589681 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a FLJ16165,colon,carcinoma,0,1 FLJ16165 NM_001004318 exon4 c.G404T p.R135L GTCCCCGTCTGGC 45 3 0.07 36 0 0 0 1 0 0 TPRX1 284355 broad.mit.edu 37 19 48305670 48305670 + Missense_Mutation SNP A A G rs201483839 bycluster TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a TPRX1,NS,carcinoma,0,3 TPRX1 NM_198479 exon2 c.T598C p.S200P GGACTGAGATTGG 42 7 0.17 35 6 0.1714285714 46 3 0 0 ASAP2 8853 mdanderson.org 37 2 9533770 9533770 + Missense_Mutation SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_003887 exon24 c.C2678T p.A893V AGCCTGCGCCGGG 30 3 0.10 20 0 0 41 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89104503 89104504 + RNA INS - - C rs149625899 bycluster;by1000genomes TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . . . . . ATTTTTTTCAGAT 14 9 0.64 12 0 0 0 0 SMPD4 55627 broad.mit.edu 37 2 130913640 130913640 + Silent SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . SMPD4 NM_017951 exon14 c.C1374T p.S458S GGAGTCGCTGCCC 176 4 0.02 125 0 0 67 93 0 0.00 DGKD 8527 broad.mit.edu 37 2 234368884 234368884 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . DGKD NM_152879 exon24 c.C2874A p.C958X GAAGTGCGAGCTG 257 4 0.02 233 0 0 106 29 0 0.00 SNRPB 6628 hgsc.bcm.edu 37 20 2442426 2442426 + Silent SNP C C T rs371293377 TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a SNRPB,right_upper_lobe,carcinoma,-1,1 SNRPB NM_198216 exon7 c.G699A p.P233P CATTCCCGGGGGA 91 4 0.04 82 0 0 -1 1 314 0 0.00 MLLT10P1 140678 hgsc.bcm.edu 37 20 29637851 29637851 + RNA SNP C C G rs148007340 TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . . . . . GGATTTCTTTCAA 14 5 0.36 16 0 0 23 1 0.04 SRSF6 6431 mdanderson.org 37 20 42087119 42087119 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_006275 exon2 c.G226T p.D76Y CGTCGCGATCGCG 18 2 0.11 21 0 0 102 0 0.00 COL20A1 57642 mdanderson.org 37 20 61951525 61951525 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_020882 exon24 c.G3051T p.R1017S GGCCAGGGGCCCC 24 2 0.08 26 0 0 0 0 TMPRSS3 64699 broad.mit.edu 37 21 43800255 43800255 + Missense_Mutation SNP G G T rs200002841 alternate_allele TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . TMPRSS3 NM_001256317 exon10 c.C1019A p.T340K CCTGACGTCCAGC 154 5 0.03 121 1 0.0082644628 40 2 0 0.00 TTC28 23331 broad.mit.edu 37 22 28492359 28492359 + Silent SNP T T C novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a TTC28,caecum,carcinoma,-2,1 TTC28 NM_001145418 exon11 c.A3585G p.G1195G TGTCCGTCCCCTT 163 3 0.02 187 2 0.0106951872 84 1 16 0 0.00 FBLN2 2199 broad.mit.edu 37 3 13612701 13612701 + Silent SNP G G A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . FBLN2 NM_001998 exon2 c.G846A p.E282E AGAAGAGGAGGAG 70 3 0.04 76 0 0 137 55 0 0.00 PBRM1 55193 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 52668670 52668671 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . PBRM1 NM_018313 exon12 c.1249_1250insA p.Y417fs CAGGGTATTTTTT 141 45 0.32 129 0 0 1252 20 0 0.00 FAM92A1P2 0 broad.mit.edu 37 4 183960484 183960484 + RNA DEL A A - novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . . . . . ACATCCAAAAAAA 6 2 0.33 4 0 0 0 0 CARD6 84674 broad.mit.edu 37 5 40841684 40841684 + Missense_Mutation SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . CARD6 NM_032587 exon1 c.A200G p.K67R AGAAAAAGGGAGA 114 3 0.03 140 1 0.0071428571 141 3 0 0.00 RREB1 6239 mdanderson.org 37 6 7231407 7231407 + Silent SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001003700 exon10 c.C3075T p.S1025S GGTCAGCAGCCCT 51 3 0.06 39 0 0 12 0 0.00 VARS2 57176 hgsc.bcm.edu;broad.mit.edu 37 6 30893760 30893760 + Missense_Mutation SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_001167734 exon29 c.A3155G p.E1052G AAGGGGAGGCAGG 152 7 0.05 135 0 0 36 0 0.00 COL21A1 0 broad.mit.edu 37 6 56035495 56035495 + Missense_Mutation SNP G G T rs41271846 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . COL21A1 NM_030820 exon5 c.C978A p.S326R AATTACGCTGGTT 228 4 0.02 180 0 0 201 13 0 0.00 TXLNB 167838 broad.mit.edu 37 6 139583903 139583903 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . TXLNB NM_153235 exon5 c.C695A p.A232E TGAAGCGCCTCTT 179 6 0.03 142 0 0 96 6 0 0.00 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . . . . . TCTTGCGCAGAAT 137 7 0.05 105 1 0.0095238095 12 0 0.00 NEFL 4747 broad.mit.edu 37 8 24813554 24813554 + RNA SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a NEFL,trunk,malignant_melanoma,0,1 NEFL NM_006158 exon1 c.C476A p.A159E TGGAGCGCCTGCT 44 4 0.09 27 1 0.037037037 47 1 1 0 0.00 PENK 5179 broad.mit.edu 37 8 57358406 57358406 + Missense_Mutation SNP C C A novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a PENK,caecum,carcinoma,-1,1 PENK NM_001135690 exon3 c.G107T p.R36L ACTAGGCGGTAGC 169 6 0.04 120 1 0.0083333333 59 1 15 0 0.00 NPR2 4882 mdanderson.org 37 9 35794017 35794017 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a NPR2_ENST00000342694,right_upper_lobe,carcinoma,-2,2 NPR2_ENST00000342694 NM_003995 exon2 c.G790T p.A264S CTCCGTGCAGGCC 49 3 0.06 59 0 0 -2 2 17 0 0.00 NANS 54187 mdanderson.org 37 9 100839290 100839290 + Missense_Mutation SNP G G T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_018946 exon3 c.G439T p.A147S AAGACAGCCAAAA 45 3 0.07 42 0 0 86 0 0.00 AKNA 80709 mdanderson.org 37 9 117099491 117099491 + Missense_Mutation SNP A A G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_030767 exon22 c.T4163C p.I1388T AGCTGGATGGAGT 63 3 0.05 52 0 0 48 1 0.02 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135140214 135140214 + Missense_Mutation SNP C C G novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_015046 exon26 c.G7446C p.E2482D GGACCCCTCTGGG 88 22 0.25 70 0 0 57 31 0.54 CEL 1056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135940444 135940444 + Missense_Mutation SNP G G A rs201336247 bycluster TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a CEL,NS,carcinoma,0,1 CEL NM_001807 exon4 c.G367A p.V123I CTGCCCGTTATGA 62 18 0.29 51 0 0 0 1 24 11 0.46 COX2 5743 hgsc.bcm.edu 37 MT 7981 7981 + Silent SNP C C T novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . ENST00000361739 exon1 c.C396T p.D132D AGGCGACCTGCGA 16 6 0.38 7 0 0 0 0 FAM120C 54954 hgsc.bcm.edu 37 X 54209318 54209318 + Missense_Mutation SNP A A G rs199506922 TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . . NM_017848 exon1 c.T314C p.L105P GGCGGCAGCGGAG 17 9 0.53 11 0 0 0 0 ZC3H12B 340554 broad.mit.edu 37 X 64722643 64722643 + Missense_Mutation SNP A A C novel TCGA-2G-AAG6-01A-11D-A42Y-10 TCGA-2G-AAG6-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5f410a81-1ad8-485f-ac66-c9b1106b49b9 c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a . ZC3H12B NM_001010888 exon5 c.A2065C p.T689P GGGGCAACCCCCC 153 21 0.14 65 11 0.1692307692 144 1 0 0.00