Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV YRDC 79693 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 38270037 38270037 + Missense_Mutation SNP C C T rs138070077 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 YRDC,NS,carcinoma,0,1 YRDC NM_024640 exon4 c.G704A p.R235H CCAAGGCGACACT 156 13 0.08 153 0 0 0 0 1 75 4 0.05 ACOT11 26027 mdanderson.org 37 1 55070882 55070882 + Missense_Mutation SNP G G T rs143707794 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_015547 exon13 c.G1370T p.R457L ACTACCGGTGAGG 49 3 0.06 45 0 0 37 0 0.00 LRRC8B 23507 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 90048812 90048812 + Silent SNP C C T rs116502828 bycluster;byfrequency;by1000genomes TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_015350 exon5 c.C603T p.S201S AGATTCCGGCAAA 70 5 0.07 79 0 0 0.003 2 0 0.00 GFI1 2672 mdanderson.org 37 1 92948551 92948551 + Silent SNP G G T rs143913803 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001127215 exon3 c.C168A p.S56S TTCGGGGGACAAA 17 2 0.12 26 0 0 2 0 0.00 . 728841 broad.mit.edu 37 1 144220816 144220816 + Missense_Mutation SNP A A G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 ENSG00000162825,bladder,carcinoma,0,2 . . . . . AGAAAGAGCCTGA 72 3 0.04 83 0 0 2 1 0 0.00 NBPF14 25832 broad.mit.edu 37 1 148009435 148009435 + Silent SNP A A T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . NBPF14 NM_015383 exon16 c.T1872A p.G624G AAGACAACCTGAA 355 7 0.02 516 0 0 107 51 1 0.02 KCNJ10 3766 mdanderson.org 37 1 160011301 160011301 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_002241 exon2 c.G1022A p.G341D CGGAGGCCACTAG 118 5 0.04 105 0 0 0 0 CR1 1378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207787775 207787775 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_000651 exon40 c.G6602A p.S2201N CTGCTAGTCATTG 100 31 0.31 101 0 0 2 0 0.00 CDC42BPA 8476 broad.mit.edu 37 1 227441766 227441766 + Splice_Site SNP T T C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . CDC42BPA NM_003607 exon2 c.A269G p.E90G CTTACCTCCCCAA 166 5 0.03 163 0 0 528 2 0 0.00 TRIM67 440730 mdanderson.org 37 1 231298836 231298836 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 TRIM67_ENST00000366653,colon,carcinoma,0,2 TRIM67_ENST00000366653 NM_001004342 exon1 c.G121A p.G41S CCGGACGGTGAGC 46 3 0.07 36 0 0 0 2 0 0 CHRM3 1131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 240071655 240071655 + Missense_Mutation SNP C C T rs200967479 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 CHRM3,colon,carcinoma,0,1 CHRM3 NM_000740 exon5 c.C904T p.R302C ATGAAACGCTCCA 134 27 0.20 136 0 0 0 1 17 2 0.12 ANKRD16 54522 mdanderson.org 37 10 5920171 5920171 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001009941 exon7 c.C1008A p.D336E CGTGATGTCTTCA 24 3 0.13 52 0 0 26 0 0.00 POLR3A 11128 mdanderson.org 37 10 79742493 79742493 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_007055 exon27 c.C3512A p.A1171D ACCACAGCCTCAC 58 4 0.07 81 0 0 32 0 0.00 TRIM5 85363 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 5699638 5699638 + Silent SNP G G A rs182373551 bycluster;by1000genomes TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 TRIM5_ENST00000380034,extremity,malignant_melanoma,-1,2 TRIM5_ENST00000380034 NM_033093 exon4 c.C540T p.N180N CAAGACGTTGGTT 131 8 0.06 178 0 0 0 -1 2 11 0 0.00 TRIM51 84767 broad.mit.edu 37 11 55657490 55657490 + Silent SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_032681 exon6 c.G834T p.L278L TGGACTGCTGGAC 48 3 0.06 50 0 0 0 0 PATL1 219988 mdanderson.org 37 11 59425075 59425075 + Silent SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_152716 exon5 c.C549T p.G183G AGGACTGCCAATG 33 3 0.09 46 0 0 26 0 0.00 EHBP1L1 254102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65350457 65350457 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001099409 exon9 c.G2314A p.A772T GAAGGTGCGATAT 80 17 0.21 88 0 0 43 8 0.19 CEP57 9702 mdanderson.org 37 11 95562419 95562419 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_014679 exon10 c.G1196T p.C399F TGGAGTGTGAATT 41 3 0.07 63 0 0 100 0 0.00 DSCAML1 57453 mdanderson.org 37 11 117301733 117301733 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_020693 exon32 c.C5571A p.S1857R CACCATGCTGTTC 34 3 0.09 44 0 0 4 0 0.00 FOXM1 2305 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 2983605 2983605 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001243089 exon2 c.C40T p.R14W GCCTCCGTCTTTT 100 6 0.06 55 0 0 86 1 0.01 TNFRSF1A 7132 broad.mit.edu 37 12 6438980 6438980 + Missense_Mutation SNP A A C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . TNFRSF1A NM_001065 exon9 c.T1021G p.W341G CCTCCCACTTCTG 130 17 0.13 62 10 0.1612903226 39 533 13 0.02 PLEKHA8P1 0 broad.mit.edu 37 12 45566846 45566846 + RNA SNP T T A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . PLEKHA8P1 . . . . TTTTTTTAATTTT 13 5 0.38 21 0 0 38 3 1 0.33 KRT81 3887 hgsc.bcm.edu;broad.mit.edu 37 12 52681795 52681795 + Silent SNP G G T rs200239075 by1000genomes;alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 KRT81,NS,lymphoid_neoplasm,0,1 KRT81 NM_002281 exon5 c.C873A p.A291A GGCCTCGGCCCGG 97 4 0.04 73 0 0 0 1 0 0 GOLGA3 2802 hgsc.bcm.edu 37 12 133353241 133353241 + Silent SNP T T C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 GOLGA3,right_upper_lobe,carcinoma,0,2 GOLGA3 NM_005895 exon21 c.A3957G p.E1319E TAGCCCTTCCAGT 62 3 0.05 82 2 0.0243902439 0 2 51 0 0.00 DOCK9 23348 broad.mit.edu;mdanderson.org 37 13 99449463 99449463 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . DOCK9 . . . . ATCAGACGTTCGT 116 7 0.06 175 0 0 311 45 0 0.00 GAS6 2621 mdanderson.org 37 13 114538575 114538575 + Missense_Mutation SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_000820 exon7 c.G623T p.G208V GCCTCCCCGCAGG 47 3 0.06 92 0 0 115 0 0.00 . 0 bcgsc.ca 37 14 20137652 20137652 + RNA SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . AATTACGGCAGTG 12 4 0.33 22 0 0 2 0 0.00 SALL2 6297 mdanderson.org 37 14 21992828 21992828 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 SALL2,NS,carcinoma,0,1 SALL2 NM_005407 exon2 c.C1034A p.P345Q AGCCCTGGGGAGG 33 3 0.09 55 0 0 0 1 32 0 0.00 PLEKHH1 57475 mdanderson.org 37 14 68035891 68035891 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_020715 exon8 c.C1300T p.R434W GGCATGCGGCTCT 44 3 0.07 43 0 0 7 0 0.00 RPAP1 26015 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 41819688 41819688 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_015540 exon12 c.C1544T p.A515V CTTTTTGCTTTTC 88 8 0.09 105 0 0 28 2 0.07 SLTM 79811 broad.mit.edu 37 15 59175946 59175946 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 SLTM,colon,carcinoma,+1,1 SLTM NM_024755 exon20 c.C2875T p.R959W TGTCCCGTCCATG 140 5 0.04 189 0 0 90 1 122 9 0.07 rescued with RNA-seq PIF1 80119 mdanderson.org 37 15 65116191 65116191 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_025049 exon2 c.G344A p.R115H AGGAAGCGGCGCA 9 2 0.22 18 0 0 0 0 DENND4A 10260 mdanderson.org 37 15 65962392 65962392 + Silent SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001144823 exon26 c.C4596A p.P1532P CAGAAAGGGTAAG 50 3 0.06 75 0 0 9 0 0.00 LOC645752 0 broad.mit.edu 37 15 78212706 78212711 + RNA DEL AGGGCT AGGGCT - novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 AGGGCT AGGGCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . CTTAAAAGGGCTA 8 4 0.50 7 1 0.1428571429 0 0 PDXDC1 23042 hgsc.bcm.edu 37 16 15122751 15122751 + Silent SNP C C T rs117411702 bycluster TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 PDXDC1,NS,carcinoma,0,3 PDXDC1 NM_015027 exon15 c.C1221T p.A407A TAAAGCCGTCCCA 98 10 0.10 70 1 0.0142857143 0.002 0 3 332 28 0.08 ZDHHC1 29800 mdanderson.org 37 16 67428728 67428728 + Silent SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_013304 exon11 c.G1299A p.P433P GGCCAGCGGCGTG 14 3 0.21 8 0 0 5 0 0.00 ALOX12 239 mdanderson.org 37 17 6900302 6900302 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_000697 exon2 c.G293A p.R98H GCTACCGCTGGGT 37 3 0.08 13 0 0 8 0 0.00 NLGN2 57555 broad.mit.edu;mdanderson.org 37 17 7311754 7311754 + Missense_Mutation SNP C C G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . NLGN2 NM_020795 exon1 c.C180G p.N60K CAACAACGAGATC 32 3 0.09 26 0 0 61 4 0 0.00 SENP3 26168 broad.mit.edu 37 17 7466636 7466636 + Silent SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . SENP3 NM_015670 exon2 c.G243A p.E81E AGAAGAGGAGGAG 91 4 0.04 69 0 0 18 76 0 0.00 KSR1 8844 mdanderson.org 37 17 25904572 25904572 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_014238 exon4 c.G16T p.V6L GCCAAGGTGAAGG 33 3 0.09 31 0 0 15 0 0.00 NOS2 4843 mdanderson.org 37 17 26089845 26089845 + Missense_Mutation SNP C C T rs373770638 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_000625 exon22 c.G2779A p.V927M TGACCACGGCCAC 36 3 0.08 43 0 0 8 0 0.00 GRB7 2886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 37901196 37901196 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001242442 exon9 c.C1039T p.Q347X GATGAGCAGAGCC 136 32 0.24 126 0 0 62 7 0.11 HEXIM2 124790 broad.mit.edu 37 17 43246910 43246910 + Missense_Mutation SNP C C G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . HEXIM2 NM_144608 exon4 c.C595G p.R199G TACGAACGCTTCC 36 3 0.08 38 0 0 19 38 2 0.05 OSBPL7 114881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 45891018 45891018 + Missense_Mutation SNP C C G rs139618928 alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_145798 exon15 c.G1534C p.E512Q GCTCCTCGCAGAG 91 14 0.15 99 0 0 14 4 0.29 MIR548W 100422923 hgsc.bcm.edu 37 17 60879148 60879148 + RNA SNP G G C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . GTGTTAGAGTCCT 56 16 0.29 61 0 0 0 0 CD300A 11314 broad.mit.edu 37 17 72469724 72469724 + Silent SNP A A G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . CD300A NM_007261 exon2 c.A90G p.G30G GGGGGGATCCCTG 62 19 0.31 71 15 0.2112676056 40 14 3 0.21 C17orf99 100141515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76162016 76162016 + Silent SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001163075 exon5 c.C687A p.P229P GAGCCCCATCCTT 111 24 0.22 99 0 0 5 1 0.20 NARF 26502 mdanderson.org 37 17 80436760 80436760 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_012336 exon6 c.G605A p.G202D TCATGGGCTCTTT 24 3 0.13 47 1 0.0212765957 82 0 0.00 KCTD1 284252 mdanderson.org 37 18 24127920 24127920 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001142730 exon1 c.C581A p.P194Q AAGTCCGGGCTCT 21 3 0.14 28 0 0 5 0 0.00 GALNT1 2589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 33263468 33263468 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_020474 exon4 c.G595T p.V199L GCTGCTGTGTCTA 64 21 0.33 102 0 0 99 40 0.40 EPG5 57724 mdanderson.org 37 18 43481039 43481039 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_020964 exon26 c.C4568A p.S1523Y GCAGAGGAAATAA 46 3 0.07 60 0 0 5 0 0.00 ZCCHC2 54877 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 60191501 60191501 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_017742 exon1 c.G844A p.E282K CTGAGGGAACACT 41 17 0.41 53 0 0 5 2 0.40 HMHA1 23526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1073680 1073680 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001258328 exon5 c.G706A p.E236K GTGTCCGAGTTCC 38 9 0.24 41 0 0 27 0 0.00 BTBD2 55643 mdanderson.org 37 19 1990038 1990038 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_017797 exon5 c.G953A p.R318H GGGAAGCGAATGA 40 3 0.08 48 0 0 210 0 0.00 ZFR2 23217 mdanderson.org 37 19 3831705 3831705 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_015174 exon4 c.C551A p.T184N TAGGAGGTCACGA 21 3 0.14 28 0 0 0 0 FCGBP 8857 broad.mit.edu;mdanderson.org 37 19 40366368 40366368 + Missense_Mutation SNP G G C rs151261300 bycluster;byfrequency;alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . FCGBP NM_003890 exon30 c.C13866G p.D4622E GAGGTCGTCTGCG 40 4 0.10 46 0 0 416 57 11 0.19 SPTBN4 57731 broad.mit.edu;mdanderson.org 37 19 41081444 41081444 + Missense_Mutation SNP G G A rs372875932 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 SPTBN4,colon,carcinoma,+1,1 SPTBN4 NM_020971 exon36 c.G7664A p.G2555E AAGGCGGAGATCG 16 3 0.19 27 0 0 213 1 6 2 0.33 EML2 24139 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 46116800 46116800 + Splice_Site SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 EML2,NS,carcinoma,0,1 EML2 NM_001193268 exon21 c.G2426T p.R809L CTCACTCGAGGCT 45 5 0.11 48 0 0 64 1 99 7 0.07 SLC20A1 6574 mdanderson.org 37 2 113414819 113414819 + Splice_Site SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_005415 exon6 c.778+1G>T . TTGAACGTAAGTA 79 4 0.05 80 0 0 5 0 0.00 POTEF 728378 broad.mit.edu 37 2 130877755 130877755 + Missense_Mutation SNP T T C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . POTEF NM_001099771 exon3 c.A334G p.S112G TGCTGCTCCCCCT 179 5 0.03 167 0 0 140 1 0 0.00 C2orf54 79919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 241835040 241835040 + Silent SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001085437 exon1 c.C375T p.T125T ATCCTCGGTGGTC 108 10 0.09 114 0 0 15 6 0.40 GFRA4 64096 broad.mit.edu 37 20 3641387 3641400 + Splice_Site DEL CCCGGCCGCGCGTA CCCGGCCGCGCGTA - novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 CCCGGCCGCGCGTA CCCGGCCGCGCGTA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . GFRA4 . . . . CCGGATCCCGGCC 10 4 0.40 9 0 0 10 0 0 . 0 broad.mit.edu 37 20 10869747 10869748 + RNA INS - - T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . TTTTTTATTTTTT 6 2 0.33 7 0 0 0 0 PFDN4 5203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 52830954 52830954 + Missense_Mutation SNP C C G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_002623 exon2 c.C89G p.T30R GGAATACAAGTAG 395 117 0.30 372 0 0 97 28 0.29 TUBB1 81027 hgsc.bcm.edu;bcgsc.ca 37 20 57599434 57599434 + Missense_Mutation SNP C C T rs121918555 bycluster;by1000genomes TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_030773 exon4 c.C952T p.R318W ATTTTCCGGGGCA 69 4 0.06 43 0 0 0 0 0 ZNRF3 84133 mdanderson.org 37 22 29446834 29446834 + Missense_Mutation SNP C C T rs375016509 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001206998 exon8 c.C2665T p.R889W CTACTGCGGCCTG 23 2 0.09 32 0 0 20 0 0.00 SH3BP1 23616 mdanderson.org 37 22 38051389 38051389 + Missense_Mutation SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_018957 exon18 c.C1804A p.P602T GGGACCCCCCAAG 17 3 0.18 22 0 0 45 0 0.00 RRP7B 91695 hgsc.bcm.edu 37 22 42976780 42976780 + RNA SNP A A C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . GGCCTCACACATG 266 70 0.26 347 0 0 0 0 TTC38 55020 broad.mit.edu 37 22 46685729 46685729 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 TTC38,NS,carcinoma,0,1 TTC38 NM_017931 exon13 c.G1249T p.V417F AGAGACGTCTTCA 58 3 0.05 67 0 0 40 1 83 0 0.00 CELSR1 9620 mdanderson.org 37 22 46860176 46860176 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_014246 exon2 c.C3611A p.T1204N CTGTTGGTCAGCA 37 3 0.08 82 0 0 2 0 0.00 ITPR1 3708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 4687295 4687295 + Silent SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001099952 exon10 c.G738A p.E246E TGCTGAGCAGGAG 101 24 0.24 98 0 0 2 0 0.00 NISCH 11188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52492740 52492740 + Missense_Mutation SNP C C G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001276293 exon3 c.C240G p.N80K GAAAAACTCAAGA 110 23 0.21 97 0 0 45 21 0.47 PDZRN3 23024 mdanderson.org 37 3 73433414 73433414 + Missense_Mutation SNP G G T rs376105538 alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_015009 exon10 c.C2303A p.P768Q GTGAGCGGGGTGC 38 4 0.11 40 0 0 34 0 0.00 NPHP3 27031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 132408024 132408024 + Missense_Mutation SNP A A C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_153240 exon20 c.T2777G p.L926W TGCTTCAATGAAT 113 25 0.22 134 0 0 22 7 0.32 TFRC 7037 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 195789794 195789794 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . TFRC NM_001128148 exon12 c.C1335A p.S445R GCTTCTGCTGGGC 65 5 0.08 73 0 0 54 34 0 0.00 SHROOM3 57619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 77631363 77631363 + Missense_Mutation SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_020859 exon3 c.C378A p.S126R CGTCAGCCCAGAA 199 69 0.35 245 0 0 10 4 0.40 OTUD4 54726 hgsc.bcm.edu 37 4 146059041 146059041 + Silent SNP A A G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 OTUD4,bladder,carcinoma,0,2 OTUD4 NM_001102653 exon21 c.T2691C p.H897H GGGAGGATGAGCC 70 3 0.04 122 0 0 0 2 18 0 0.00 ARHGAP10 79658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 148993187 148993187 + Missense_Mutation SNP C C G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_024605 exon23 c.C2316G p.N772K TCTGAACGGCAAG 59 12 0.20 53 0 0 22 0 0.00 SLC12A7 10723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1093664 1093664 + Missense_Mutation SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_006598 exon3 c.G326T p.R109L CGCCGCCGGCTCT 50 16 0.32 36 0 0 26 12 0.46 ADCY2 108 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 7707008 7707008 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 ADCY2,NS,carcinoma,-2,1 ADCY2 NM_020546 exon8 c.G1261T p.V421F GGAGGGGTCCCTG 64 5 0.08 52 0 0 337 1 1 1 1.00 PRDM9 56979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 23527778 23527778 + Missense_Mutation SNP G G A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_020227 exon11 c.G2581A p.V861I CCCTACGTCTGCA 191 39 0.20 209 0 0 0 0 EGFLAM 133584 hgsc.bcm.edu;broad.mit.edu 37 5 38448404 38448404 + Silent SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001205301 exon19 c.G2490T p.T830T CCCAGCGATCATA 70 4 0.06 69 0 0 24 0 0.00 BMP6 654 mdanderson.org 37 6 7727541 7727541 + Missense_Mutation SNP A A T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 BMP6,NS,carcinoma,0,1 BMP6 NM_001718 exon1 c.A353T p.Q118L AGCAGCAGCTGCC 25 3 0.12 35 0 0 0 1 2 0 0.00 VARS2 57176 broad.mit.edu 37 6 30882614 30882614 + Missense_Mutation SNP A A G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . VARS2 NM_001167734 exon2 c.A91G p.M31V CTCCTGATGCCTC 158 4 0.03 131 0 0 60 32 4 0.13 rescued with RNA-seq MSH5 4439 mdanderson.org 37 6 31726391 31726391 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_025259 exon14 c.G1261T p.D421Y GAAATTGATGAGA 81 4 0.05 87 0 0 77 0 0.00 IPCEF1 26034 mdanderson.org 37 6 154544307 154544307 + Missense_Mutation SNP T T C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_001130699 exon7 c.A317G p.K106R TACTGCTTTTTCT 43 3 0.07 51 0 0 0 0 LPA 4018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160999712 160999712 + Missense_Mutation SNP C C A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_005577 exon28 c.G4314T p.R1438S TGGATTCCTGCAG 97 18 0.19 93 0 0 0 0 TNS3 64759 mdanderson.org 37 7 47474985 47474985 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_022748 exon8 c.G219A p.W73X CTCTGGCCAGCCC 34 3 0.09 35 0 0 19 0 0.00 POM121L12 285877 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 53103898 53103898 + Silent SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_182595 exon1 c.G534T p.L178L GACTCTGCTGGGG 34 9 0.26 35 0 0 0 0 CCT6P3 0 broad.mit.edu 37 7 64528813 64528814 + RNA INS - - T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . CTGTAACTTTTTT 9 3 0.33 11 0 0 2 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . CCGGGGTCCTTGA 134 3 0.02 110 1 0.0090909091 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 151845608 151845608 + Silent SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_170606 exon52 c.G13404A p.T4468T GGCACCCGTCTTG 108 6 0.06 86 0 0 24 0 0.00 MFHAS1 9258 mdanderson.org 37 8 8748682 8748682 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_004225 exon1 c.C1887A p.C629X GTCCCTGCAGCTA 25 3 0.12 28 0 0 15 0 0.00 RP1L1 94137 hgsc.bcm.edu 37 8 10465934 10465934 + Missense_Mutation SNP T T C rs202056828 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 RP1L1,NS,carcinoma,+1,1 RP1L1 NM_178857 exon4 c.A5674G p.T1892A CTGGGGTCTCTAC 56 10 0.18 64 2 0.03125 1 1 0 0 RP1L1 94137 bcgsc.ca 37 8 10466034 10466034 + Silent SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . RP1L1 NM_178857 exon4 c.G5574A p.G1858G GGCATCCCCTTCT 27 5 0.19 79 0 0 453 0 0 ADAM28 10863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 24151704 24151704 + Silent SNP T T G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_014265 exon1 c.T42G p.V14V CTCTGTTGCAGGT 82 15 0.18 87 0 0 0 0 ZC3H3 23144 broad.mit.edu 37 8 144522222 144522222 + Missense_Mutation SNP G G C rs112624965 bycluster TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . ZC3H3 NM_015117 exon11 c.C2804G p.T935S TCCTTGGTGAGGG 44 5 0.11 36 0 0 75 83 0 0.00 SLC24A2 25769 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 19597247 19597247 + Missense_Mutation SNP T T C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . SLC24A2 NM_020344 exon4 c.A1109G p.Y370C GTGTCATAATATT 134 38 0.28 151 1 0.0066225166 93 0 0 UNC13B 10497 ucsc.edu;bcgsc.ca 37 9 35397638 35397638 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . UNC13B NM_006377 exon29 c.G3436T p.G1146W ACCATCGGGAAGG 32 4 0.13 33 0 0 153 32 0 0.00 DAB2IP 153090 mdanderson.org 37 9 124528809 124528809 + Silent SNP G G T rs371966536 alternate_allele TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 DAB2IP_ENST00000259371,rectum,carcinoma,0,3 DAB2IP_ENST00000259371 NM_032552 exon9 c.G1413T p.S471S TGCCTCGTGGAGG 24 2 0.08 27 0 0 0 3 21 0 0.00 SURF4 6836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 136234314 136234314 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_033161 exon2 c.G56A p.R19H GTGACACGGAGGA 41 5 0.12 49 0 0 186 47 0.25 SNAPC4 6621 mdanderson.org 37 9 139272510 139272510 + Missense_Mutation SNP G G T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_003086 exon21 c.C3769A p.P1257T GGGGCGGCTTCTC 28 3 0.11 46 0 0 17 0 0.00 TCEANC 170082 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 13681576 13681576 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_152634 exon4 c.C1039T p.L347F CTTTTCCTTCCCA 123 12 0.10 108 0 0 3 0 0.00 PHEX 5251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 22208575 22208575 + Missense_Mutation SNP C C T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . NM_000444 exon15 c.C1601T p.P534L CAAATCCGACGAC 80 21 0.26 67 0 0 3 1 0.33 ZNF630 57232 broad.mit.edu 37 X 47919586 47919586 + Missense_Mutation SNP A A T novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . ZNF630 NM_001037735 exon5 c.T245A p.V82E CCTTTCACTCTGT 66 11 0.17 37 0 0 71 3 0 0.00 SSX9 280660 hgsc.bcm.edu 37 X 48161015 48161015 + RNA SNP A A C novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . GGTGCTACATCAG 167 54 0.32 152 0 0 0 0 GATA1 2623 broad.mit.edu 37 X 48652265 48652265 + Silent SNP A A G novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . GATA1 NM_002049 exon6 c.A936G p.K312K TGGAAAAGGGAAA 134 3 0.02 105 1 0.0095238095 342 1 0 0.00 SLC25A14 9016 broad.mit.edu 37 X 129474305 129474305 + Missense_Mutation SNP C C T rs371552768 TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . SLC25A14 NM_022810 exon1 c.C53T p.T18M TTGCAACGGCGGC 91 3 0.03 91 0 0 49 1 0 0.00 . 100874520 bcgsc.ca 37 Y 10011766 10011766 + RNA SNP C C T rs399592 bycluster;byfrequency;bysubmitter TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . AAACTGCCCCTCC 51 9 0.18 48 0 0 0 0 PRKDC 5591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 48749779 48749779 + Missense_Mutation SNP T T A novel TCGA-2G-AAGG-01A-11D-A42Y-10 TCGA-2G-AAGG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5e9e9eff-4302-47e1-85c1-a85d559e034e 81975a2c-c83e-4008-8209-835296eeeac4 . . . . . . CTGAAATTCGCAT 46 10 0.22 54 0 0 55 8 0.15