Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV DFFB 1677 mdanderson.org 37 1 3775322 3775322 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_004402 exon2 c.G155T p.G52V AGGATGGCACGGA 122 5 0.04 85 0 0 10 0 0.00 . 100421113 bcgsc.ca 37 1 17077216 17077216 + RNA SNP G G T rs1759214 bycluster;byfrequency TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . CTGGAGGAGGAGC 84 13 0.15 54 1 0.0185185185 0 0 HORMAD1 84072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150675839 150675839 + Missense_Mutation SNP G G A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_032132 exon13 c.C979T p.L327F TATCAAGTTCAGA 107 29 0.27 97 0 0 14 8 0.57 MAP10 54627 broad.mit.edu 37 1 232942071 232942071 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_019090 exon1 c.G1302T p.L434F AGAATTGGACATG 76 4 0.05 56 0 0 7 0 0.00 RET 5979 mdanderson.org 37 10 43604576 43604576 + Silent SNP C C T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 RET_ENST00000340058,NS,carcinoma,0,2 RET_ENST00000340058 NM_020630 exon6 c.C1161T p.G387G AGCGGGCGTCCTC 45 3 0.07 61 0 0 0 2 2 0 0.00 COL17A1 1308 broad.mit.edu 37 10 105821178 105821178 + Missense_Mutation SNP C C T rs200123495 TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . COL17A1 NM_000494 exon13 c.G964A p.V322I TGGAAACGCCAGT 50 3 0.06 33 0 0 149 28 0 0.00 LOC650368 0 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C C T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . AAGTGGCAGGAGC 19 3 0.16 16 0 0 5 0 0.00 OR51B2 79345 mdanderson.org 37 11 5345000 5345000 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_033180 exon1 c.C528A p.F176L GAGGCAGAAAGCA 47 3 0.06 61 0 0 1 0 0.00 OR51B5 282763 mdanderson.org 37 11 5364396 5364396 + Missense_Mutation SNP C C T rs369290068 TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001005567 exon5 c.G359A p.R120H ATAAAACGGTCAT 29 3 0.10 38 0 0 4 0 0.00 UBQLN3 50613 mdanderson.org 37 11 5529308 5529308 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_017481 exon2 c.C1481A p.A494D TGTGGAGCTGGAT 54 3 0.06 70 0 0 0 0 TRIM6-TRIM34 445372 mdanderson.org 37 11 5631468 5631468 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001003819 exon6 c.G951T p.V317V GCGAGTGTGTAGA 45 3 0.07 57 0 0 8 0 0.00 RRAS2 22800 mdanderson.org 37 11 14380339 14380339 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_012250 exon1 c.C78A p.G26G CGACTTGCCCACG 18 3 0.17 12 0 0 170 1 0.01 SPTBN2 6712 mdanderson.org 37 11 66468012 66468012 + Silent SNP G G A rs374033075 TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_006946 exon16 c.C3558T p.G1186G GAGCACGCCCTCA 22 2 0.09 22 0 0 15 0 0.00 GAL 51083 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 68455486 68455486 + Silent SNP C C T rs367644530 TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_015973 exon4 c.C141T p.A47A AGATGCCGTTGGC 173 10 0.06 220 0 0 316 47 0.15 MARCH9 92979 broad.mit.edu 37 12 58152467 58152467 + Silent SNP A A G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . MARCH9 NM_138396 exon4 c.A828G p.G276G AGGGGGAGGGACG 128 5 0.04 105 1 0.0095238095 28 61 0 0.00 ASCL4 121549 mdanderson.org 37 12 108169178 108169178 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_203436 exon1 c.G186T p.L62F GTACTTGCCCGTG 23 2 0.09 23 0 0 1 0 0.00 SBNO1 55206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123830101 123830101 + Missense_Mutation SNP G G C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001167856 exon3 c.C254G p.T85S GTTGTAGTAGATG 81 21 0.26 92 0 0 10 3 0.30 SACS 26278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 23906199 23906199 + Missense_Mutation SNP C C G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_014363 exon10 c.G11816C p.G3939A TGCACACCAATAT 108 50 0.46 123 0 0 16 5 0.31 MAB21L1 4081 hgsc.bcm.edu 37 13 36050493 36050493 + RNA SNP T T G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . GCTGCTTTTCCCT 80 4 0.05 95 0 0 0 0 FREM2 341640 broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 39264104 39264104 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . FREM2 NM_207361 exon1 c.G2623T p.G875C AAACATGGCCACA 86 5 0.06 78 0 0 385 1 0 0.00 MIR1297 100302187 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 13 54886174 54886174 + RNA SNP G G C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . ACCCTAGAGATAA 237 72 0.30 285 0 0 0 0 MBNL2 10150 mdanderson.org 37 13 97995343 97995343 + Missense_Mutation SNP C C T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_207304 exon4 c.C413T p.T138I CTGTAACCCCTGG 105 5 0.05 115 0 0 3 0 0.00 LIPC 3990 mdanderson.org 37 15 58855705 58855705 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_000236 exon8 c.G1171T p.G391C TCAAGGGGCAAAG 33 3 0.09 47 0 0 18 0 0.00 LACTB 114294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63414877 63414877 + Missense_Mutation SNP G G A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_171846 exon2 c.G400A p.D134N TCTGTAGATGGAA 135 30 0.22 165 0 0 32 13 0.41 WDR90 197335 broad.mit.edu 37 16 705131 705131 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . WDR90 NM_145294 exon14 c.1540delT p.F514fs GTCACCTTTTTTG 173 8 0.05 168 0 0 107 6 0 0.00 PAQR4 124222 mdanderson.org 37 16 3021699 3021699 + Missense_Mutation SNP G G A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 PAQR4,NS,carcinoma,0,1 PAQR4 NM_152341 exon3 c.G572A p.R191Q GGGCCCGGGGAGT 46 3 0.07 37 0 0 0 1 38 0 0.00 RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 RRAD,NS,carcinoma,0,6 RRAD NM_001128850 exon5 c.C833A p.A278E CGCTTCGCCTTTT 125 7 0.06 122 1 0.0081967213 31 6 479 25 0.05 DDX19B 11269 mdanderson.org 37 16 70333207 70333207 + Missense_Mutation SNP A A T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001014451 exon1 c.A7T p.T3S ATGGCCACTGACT 34 3 0.09 49 0 0 33 0 0.00 . 0 broad.mit.edu 37 16 76828308 76828309 + RNA INS - - T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . TACTTTGTTTTTT 6 2 0.33 4 0 0 0 0 CDH15 1013 broad.mit.edu;mdanderson.org 37 16 89254650 89254650 + Missense_Mutation SNP G G A rs374936482 TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 CDH15,NS,carcinoma,0,1 CDH15 NM_004933 exon7 c.G935A p.R312H CCATCCGCACGGA 90 5 0.06 92 0 0 54 1 0 0 CDH15 1013 mdanderson.org 37 16 89260268 89260268 + Missense_Mutation SNP C C T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_004933 exon13 c.C2098T p.P700S CCCCAGCCACCCC 57 3 0.05 55 0 0 2 0 0.00 NKIRAS2 28511 mdanderson.org 37 17 40175799 40175799 + Missense_Mutation SNP G G A rs375322757 TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_017595 exon4 c.G464A p.R155H ACCGGCGCTCCCT 70 4 0.06 45 0 0 126 0 0.00 HDAC5 10014 mdanderson.org 37 17 42160955 42160955 + Silent SNP G G A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001015053 exon18 c.C2424T p.C808C CAGCAGGCAGCCC 82 4 0.05 88 0 0 192 0 0.00 HEXIM1 0 broad.mit.edu 37 17 43229646 43229647 + RNA INS - - A rs112374579 bycluster TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . HEXIM1 . . . . CTTTATTTTTTTT 7 4 0.57 4 0 0 25 1 0 0.00 RPTOR 57521 hgsc.bcm.edu;mdanderson.org 37 17 78921151 78921151 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_020761 exon27 c.G3265T p.D1089Y GCCACAGGTGAGC 90 4 0.04 86 0 0 42 0 0.00 FN3KRP 79672 broad.mit.edu 37 17 80674698 80674698 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . FN3KRP NM_024619 exon1 c.G67T p.G23W GGGGGCGGGTGCA 410 7 0.02 345 1 0.0028985507 31 33 0 0.00 FN3K 64122 broad.mit.edu;mdanderson.org 37 17 80696387 80696387 + Missense_Mutation SNP A A G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . FN3K NM_022158 exon2 c.A164G p.E55G AGGGGGAGGTGGC 52 4 0.08 27 0 0 17 43 0 0.00 ATP8B1 5205 mdanderson.org 37 18 55371824 55371824 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_005603 exon4 c.C356A p.A119E TTGGCTGCTCTCT 34 3 0.09 53 0 0 8 0 0.00 ICAM5 7087 mdanderson.org 37 19 10402486 10402486 + Splice_Site SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_003259 exon3 c.673+1G>T . CCTTCTGTGAGTG 54 3 0.06 62 0 0 0 0 GTPBP3 84705 mdanderson.org 37 19 17449511 17449511 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001195422 exon4 c.G618T p.L206L AGAGCTGGGCCAC 41 3 0.07 49 0 0 84 0 0.00 COMP 1311 mdanderson.org 37 19 18896612 18896612 + Silent SNP C C A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_000095 exon14 c.G1539T p.V513V GTCTACCACCTTG 41 3 0.07 50 0 0 30 0 0.00 NFKBIB 4793 mdanderson.org 37 19 39390769 39390769 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_002503 exon1 c.G97T p.G33X CCCGGAGGACCTG 36 3 0.08 37 0 0 70 0 0.00 LIPE 3991 mdanderson.org 37 19 42914477 42914477 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_005357 exon2 c.C1401A p.G467G GCAGCGGCCATAG 54 3 0.06 69 0 0 6 0 0.00 LIPE 3991 mdanderson.org 37 19 42914758 42914758 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_005357 exon2 c.C1120A p.R374S GGCTGCGGTACCC 42 3 0.07 48 0 0 7 0 0.00 DYSF 8291 broad.mit.edu 37 2 71795194 71795194 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . DYSF NM_001130982 exon26 c.G2721T p.L907L GAAGCTGTCTGTC 210 5 0.02 192 0 0 536 142 0 0.00 . 0 bcgsc.ca 37 2 81426047 81426047 + RNA SNP T T G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . TTGTCATTTTTTT 14 3 0.21 21 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179499171 179499171 + Missense_Mutation SNP C C A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001267550 exon230 c.G42337T p.D14113Y GAGAATCATTAAT 109 22 0.20 78 0 0 0 0 KANSL1L 151050 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 211018586 211018588 + In_Frame_Del DEL TTC TTC - novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 TTC TTC Unknown Untested Somatic . WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_152519 exon2 c.720_722del p.240_241del TCTGAGTTCTTCT 106 24 0.23 109 0 0 12 0 0.00 ESPNL 339768 mdanderson.org 37 2 239040289 239040289 + Silent SNP C C T rs182590742 bycluster;by1000genomes TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 ESPNL,NS,carcinoma,+2,1 ESPNL NM_194312 exon9 c.C2934T p.N978N CTTCAACGGTGAG 99 5 0.05 100 0 0 0 2 1 0 0 NCOR1P1 0 broad.mit.edu 37 20 26094406 26094407 + RNA INS - - C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . CTTGCCATTTAAA 6 2 0.33 5 2 0.4 0 0 . 0 broad.mit.edu 37 20 29572402 29572403 + RNA INS - - AC rs200824028 alternate_allele TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . GAACGGGACACAC 6 3 0.50 4 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29628229 29628229 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . FRG1B . . . . TTAGGGGAAAATG 428 18 0.04 508 13 0.0255905512 181 100 0 0.00 NFATC2 4773 broad.mit.edu;ucsc.edu;mdanderson.org 37 20 50049133 50049133 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . NFATC2 NM_012340 exon9 c.C2193A p.F731L CGTGCGGAACTGC 38 5 0.13 35 1 0.0285714286 112 3 1 0.33 SDF2L1 23753 broad.mit.edu 37 22 21997332 21997332 + Silent SNP G G A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . SDF2L1 NM_022044 exon2 c.G369A p.P123P GTCGCCGCTGTCC 176 5 0.03 145 0 0 5 222 0 0.00 CELSR1 9620 mdanderson.org 37 22 46931106 46931106 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_014246 exon1 c.C1962A p.S654R CCCGAAGCTGTAG 34 3 0.09 18 0 0 11 0 0.00 FANCD2 2177 mdanderson.org 37 3 10089633 10089633 + Silent SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001018115 exon16 c.G1311T p.S437S TCTGTCGCTGGCT 93 4 0.04 81 0 0 16 0 0.00 IQSEC1 9922 mdanderson.org 37 3 12950917 12950917 + Missense_Mutation SNP G G A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 IQSEC1,colon,carcinoma,0,1 IQSEC1 NM_014869 exon11 c.C2476T p.R826W TGAGCCGGATGCC 74 4 0.05 60 0 0 0 1 39 0 0.00 . 0 broad.mit.edu 37 3 114998899 114998900 + RNA INS - - A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . TAAATTTAAAAAA 7 3 0.43 5 0 0 1 0 0.00 EIF4G1 1981 broad.mit.edu 37 3 184040514 184040514 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . EIF4G1 NM_001194946 exon13 c.G1812T p.K604N ATATAAGTCAGGT 193 4 0.02 148 0 0 151 855 0 0.00 LOX 4015 mdanderson.org 37 5 121413599 121413599 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_002317 exon1 c.C82A p.Q28K GCTGTTGGCCGGC 36 3 0.08 30 0 0 3 0 0.00 JAKMIP2 9832 broad.mit.edu 37 5 147051343 147051343 + Silent SNP G G T rs180692323 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . JAKMIP2 NM_001270941 exon2 c.C27A p.G9G CTTCTCGCCCTTA 114 4 0.04 128 0 0 154 2 0 0.00 RGS14 10636 broad.mit.edu 37 5 176798511 176798511 + Silent SNP T T C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 RGS14,NS,adenocarcinoma,0,1 RGS14 NM_006480 exon14 c.T1419C p.H473H CACCCATCCCCCT 165 4 0.02 157 0 0 34 1 97 1 0.01 GMPR 2766 mdanderson.org 37 6 16290845 16290845 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_006877 exon8 c.G850T p.E284X GTTGCTGAGTACA 43 3 0.07 64 0 0 132 0 0.00 ZNF391 346157 mdanderson.org 37 6 27369205 27369205 + Missense_Mutation SNP G G C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_001076781 exon3 c.G1056C p.Q352H ACATCAGCACCTT 22 2 0.09 33 0 0 9 0 0.00 DDR1 780 mdanderson.org 37 6 30865223 30865223 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 DDR1_ENST00000376575,NS,adenocarcinoma,-2,3 DDR1_ENST00000376575 NM_013994 exon14 c.G2083T p.G695C CTGCTGGGCGTGT 57 3 0.05 65 0 0 -2 3 129 0 0.00 DNPH1 10591 mdanderson.org 37 6 43193827 43193827 + Missense_Mutation SNP C C T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_006443 exon3 c.G320A p.R107Q ACGGCCCGGCCCA 37 3 0.08 41 0 0 227 0 0.00 PMS2P3 0 broad.mit.edu 37 7 75154976 75154977 + RNA INS - - A novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . PMS2P3 . . . . CCGTCTCAAAAAA 12 5 0.42 6 0 0 7 0 0 MIR29A 0 broad.mit.edu 37 7 130561833 130561833 + RNA DEL A A - novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . . . . . TGATAGAAAATGG 14 5 0.36 5 0 0 0 0 FOXD4 2298 mdanderson.org 37 9 117487 117487 + Silent SNP C C T rs201596201 byfrequency TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_207305 exon1 c.G633A p.L211L GTGGGGCAGGTGG 28 7 0.25 30 1 0.0333333333 0.004 1 1 1.00 COL15A1 1306 broad.mit.edu 37 9 101797339 101797339 + Missense_Mutation SNP A A G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . COL15A1 NM_001855 exon18 c.A2123G p.K708R GGAAAAAGGGACA 124 4 0.03 114 0 0 211 43 0 0.00 CRB2 286204 mdanderson.org 37 9 126129887 126129887 + Missense_Mutation SNP T T C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_173689 exon6 c.T976C p.S326P TGTGCCTCACGGC 38 3 0.08 44 0 0 3 0 0.00 ENG 2022 mdanderson.org 37 9 130587145 130587145 + Missense_Mutation SNP T T C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_000118 exon7 c.A925G p.S309G CAATGCTGGCATT 56 3 0.05 61 0 0 96 1 0.01 COL5A1 1289 mdanderson.org 37 9 137620596 137620596 + Missense_Mutation SNP G G T novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . . NM_000093 exon6 c.G867T p.E289D GAAGGAGCCCACC 41 3 0.07 52 0 0 40 0 0.00 PNPLA4 8228 broad.mit.edu 37 X 7868821 7868821 + Missense_Mutation SNP A A G novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . PNPLA4 NM_004650 exon7 c.T668C p.L223P GGAAAAAGGGCTT 533 5 0.01 309 1 0.003236246 24 277 0 0.00 SPIN2A 54466 broad.mit.edu 37 X 57162583 57162583 + Missense_Mutation SNP T T C novel TCGA-2G-AAGK-01A-11D-A42Y-10 TCGA-2G-AAGK-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7bcb4a63-6ec0-420e-a4a3-92c2def85631 0d7f38e3-4f2b-481a-a7ec-4a19c0dda625 . SPIN2A NM_019003 exon2 c.A448G p.M150V AGACCATCCCCCT 760 6 0.01 415 1 0.0024096386 7 0 0