Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AHDC1 27245 broad.mit.edu 37 1 27878527 27878528 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . AHDC1 NM_001029882 exon6 c.100_101insC p.T34fs GGGGGGTGGGGGG 38 10 0.26 51 0 0 98 5 0 0.00 SF3A3 10946 broad.mit.edu 37 1 38442580 38442580 + Silent SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . SF3A3 NM_006802 exon12 c.C981A p.I327I TTCATAGATCTGG 102 4 0.04 98 0 0 37 374 0 0.00 ATP1A4 480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160151732 160151732 + Silent SNP A A G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_144699 exon20 c.A2880G p.L960L AGTCTTAATATTT 114 58 0.51 128 0 0 16 6 0.38 PIK3C2B 5287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204403713 204403713 + Silent SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_002646 exon25 c.C3540T p.S1180S AGCGCAGGAGTAG 105 21 0.20 145 0 0 16 3 0.19 AKT3 10000 mdanderson.org 37 1 243828083 243828083 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001206729 exon4 c.C275A p.P92Q TCCTCTGGAGTAT 43 3 0.07 64 0 0 36 1 0.03 ARHGAP21 57584 mdanderson.org 37 10 24908615 24908615 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_020824 exon9 c.C2209A p.L737I CCCTTAGGATGAC 92 4 0.04 101 0 0 30 0 0.00 UBE2D1 7321 mdanderson.org 37 10 60121140 60121140 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_003338 exon2 c.G67T p.A23S TGTTCAGCTGGAC 116 5 0.04 133 0 0 68 0 0.00 MUC2 4583 mdanderson.org 37 11 1093324 1093324 + Missense_Mutation SNP G G A rs201143282 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.G5143A p.G1715S CCCACCGGCACAC 21 4 0.19 27 1 0.037037037 0 2 0 0 NAT10 55226 broad.mit.edu 37 11 34149080 34149080 + Missense_Mutation SNP T T C novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . NAT10 NM_024662 exon12 c.T1178C p.I393T CCGCCATCCCCCT 155 4 0.03 212 0 0 78 88 0 0.00 PLCB3 5331 mdanderson.org 37 11 64032973 64032973 + Missense_Mutation SNP C C A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_000932 exon25 c.C3034A p.L1012I GGTGCCCTGTGAG 38 3 0.08 18 0 0 86 0 0.00 SNX32 254122 mdanderson.org 37 11 65617691 65617691 + Missense_Mutation SNP A A G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_152760 exon4 c.A323G p.D108G AGGGGGACAGCTC 59 4 0.07 86 0 0 0 0 TCIRG1 10312 mdanderson.org 37 11 67818021 67818021 + Silent SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_006019 exon19 c.G2304T p.V768V GGGCGTGGCGGCT 50 3 0.06 75 0 0 35 0 0.00 PAK1 5058 mdanderson.org 37 11 77085377 77085377 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001128620 exon5 c.C473A p.A158D ACCAAGGCATTAG 52 3 0.06 73 0 0 91 0 0.00 GXYLT1 283464 hgsc.bcm.edu 37 12 42481670 42481671 + Missense_Mutation DNP CA CA TG novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 Q8IXV1_HUMAN,NS,carcinoma,0,4 Q8IXV1_HUMAN NM_173601 exon8 c.T1240C p.C414H TTTCCACAGTATG 74 4 0.05 95 1 0.0105263158 0 4 54 0 0.00 MYO16 23026 mdanderson.org 37 13 109445885 109445885 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 MYO16,rectum,carcinoma,0,1 MYO16 NM_001198950 exon6 c.G638T p.R213L CACTGCGCCAGAT 55 3 0.05 91 0 0 0 1 0 0 . 0 broad.mit.edu 37 14 19890158 19890160 + RNA DEL GCC GCC - novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 GCC GCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . GCAGCGGCCGCCA 7 3 0.43 4 0 0 0 0 FOXA1 3169 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 38064138 38064138 + Missense_Mutation SNP C C G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_004496 exon1 c.G40C p.D14H TCCAGTCGCTGGT 79 8 0.10 106 0 0 70 7 0.10 HIF1A 3091 broad.mit.edu 37 14 62193436 62193436 + Missense_Mutation SNP A A G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . HIF1A NM_001243084 exon5 c.A542G p.K181R TGAAAAAGGGTAA 288 4 0.01 292 0 0 120 305 0 0.00 CCPG1 9236 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 55669303 55669303 + Missense_Mutation SNP C C A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_020739 exon5 c.G298T p.A100S CACTGGCAGTTCC 150 10 0.07 240 0 0 53 3 0.06 ZNF609 23060 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 64967246 64967247 + Frame_Shift_Ins INS - - A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . ZNF609 NM_015042 exon4 c.2193_2194insA p.D731fs GAAAGACAAAAAA 41 13 0.32 64 0 0 106 18 0 0.00 ZNF609 23060 mdanderson.org 37 15 64967320 64967320 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_015042 exon4 c.G2267A p.G756D AGGAAGGCAAAAG 53 3 0.06 92 0 0 24 0 0.00 IFT140 9742 mdanderson.org 37 16 1634259 1634259 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_014714 exon11 c.C1318A p.L440M TGCGCAGGCTGTG 43 3 0.07 47 0 0 43 0 0.00 MAZ 4150 mdanderson.org 37 16 29818801 29818801 + Missense_Mutation SNP C C A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_002383 exon2 c.C695A p.P232H TGGTGCCCCTGAG 61 3 0.05 69 0 0 612 1 0.00 LOC283922 0 bcgsc.ca 37 16 74372609 74372609 + RNA SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . AAAAAGGAGCAAA 107 5 0.05 128 3 0.0234375 0 0 PIEZO1 9780 broad.mit.edu;mdanderson.org 37 16 88800398 88800398 + Missense_Mutation SNP G G C rs62639697 byfrequency TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . PIEZO1 NM_001142864 exon17 c.C2245G p.Q749E CCTCCTGCTGCTG 59 3 0.05 74 1 0.0135135135 79 27 1 0.04 CAMKK1 84254 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 3779556 3779556 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 CAMKK1_ENST00000158166,colon,carcinoma,0,2 CAMKK1 NM_172207 exon11 c.1072delG p.E358fs GGCCTCGGGGGCC 94 35 0.37 105 0 0 70 26 0 0.00 POTEC 388468 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 14542810 14542810 + Silent SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 POTEC,NS,carcinoma,0,1 POTEC NM_001137671 exon1 c.C336T p.S112S CTTGCCGCTCCCC 245 21 0.09 481 0 0 0 1 0 0 CELF4 56853 mdanderson.org 37 18 34846535 34846535 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_020180 exon9 c.C1126A p.L376M GCTGCAGGGGGTC 43 3 0.07 67 0 0 1 0 0.00 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 9086806 9086808 + In_Frame_Del DEL CTT CTT - novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 CTT CTT Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . MUC16 NM_024690 exon1 c.5008_5010del p.1670_1670del GTAGAACTTCTTC 101 15 0.15 144 0 0 4315 0 0 TYK2 7297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10488908 10488908 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_003331 exon3 c.C175T p.H59Y CAATGTGGATGCA 88 17 0.19 89 0 0 51 6 0.12 S1PR5 53637 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10624996 10624996 + Missense_Mutation SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_030760 exon2 c.G692A p.G231E GCAGTCCCGGGCC 41 20 0.49 40 0 0 7 4 0.57 CACNA1A 773 mdanderson.org 37 19 13443691 13443691 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001127222 exon9 c.C1247A p.P416H TCAAAGGGATGCC 32 3 0.09 58 0 0 0 0 MAP3K10 4294 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 40711055 40711055 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_002446 exon4 c.G1040T p.R347L ACGGGCGGCCAGA 105 5 0.05 154 0 0 47 0 0.00 SYMPK 8189 broad.mit.edu 37 19 46355581 46355581 + Silent SNP G G T rs371606879 alternate_allele TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . SYMPK NM_004819 exon5 c.C288A p.I96I CTCCTCGATGAAG 96 3 0.03 174 0 0 104 192 0 0.00 MYH14 79784 mdanderson.org 37 19 50728869 50728869 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001077186 exon7 c.G745T p.A249S CTTCAGGCCAACC 38 3 0.08 55 0 0 25 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89100923 89100924 + RNA INS - - G rs369765448 bycluster TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . TAAAAAAGATACA 9 3 0.33 9 0 0 0 0 RANBP2 5903 mdanderson.org 37 2 109380793 109380793 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_006267 exon20 c.G3798T p.W1266C TGTATGGCATGCC 48 3 0.06 51 0 0 62 0 0.00 CNTNAP5 129684 mdanderson.org 37 2 125281916 125281916 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 CNTNAP5,rectum,carcinoma,0,2 CNTNAP5 NM_130773 exon9 c.G1361T p.S454I CGGTTAGCATCAA 97 4 0.04 111 1 0.009009009 0 2 0 0 TANK 10010 broad.mit.edu 37 2 162087615 162087615 + Silent SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . TANK NM_004180 exon7 c.C654T p.C218C ACTGTGCAGAGAT 233 4 0.02 332 0 0 35 31 0 0.00 OBSL1 23363 ucsc.edu 37 2 220422605 220422605 + Missense_Mutation SNP T T G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . OBSL1 NM_001173431 exon11 c.A3730C p.T1244P GGCAGGTGTAGAG 32 10 0.31 27 12 0.4444444444 120 123 28 0.23 SP100 6672 broad.mit.edu;mdanderson.org 37 2 231368922 231368922 + Missense_Mutation SNP A A G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . SP100 NM_001080391 exon21 c.A1787G p.E596G AAGATGAAAATAT 89 4 0.04 95 1 0.0105263158 167 4 0 0.00 GPR35 2859 mdanderson.org 37 2 241569516 241569516 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001195382 exon6 c.G240T p.M80I CCGCATGCAGCAG 34 3 0.09 48 0 0 9 0 0.00 ZNRF3 84133 mdanderson.org 37 22 29439337 29439337 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001206998 exon4 c.G552T p.K184N TGTGAAGGGTGCA 37 3 0.08 63 0 0 44 0 0.00 . 9215 bcgsc.ca;mdanderson.org 37 22 33562812 33562812 + Silent SNP A A G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . GCTAAAATCAAAG 61 17 0.28 94 0 0 1 1 1.00 CYB5R3 1727 mdanderson.org 37 22 43019864 43019864 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001171660 exon8 c.C763A p.L255M CCTCCAGCTCAGG 52 3 0.06 90 0 0 352 0 0.00 PIM3 415116 mdanderson.org 37 22 50356646 50356646 + Silent SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001001852 exon6 c.G852T p.L284L GTCGCTGGATCAG 41 3 0.07 47 0 0 64 0 0.00 PLXNB2 23654 bcgsc.ca 37 22 50719062 50719062 + Missense_Mutation SNP G G T rs200418278 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . PLXNB2 NM_012401 exon25 c.C4031A p.A1344D GCGCGGGCCGAGA 39 4 0.10 70 0 0 172 234 0 0.00 CCDC54 84692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 107097048 107097048 + Missense_Mutation SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_032600 exon1 c.C614T p.T205I AGTCCACTGACCA 311 112 0.36 394 0 0 0 0 TNIK 23043 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 170856034 170856034 + Silent SNP C C A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . TNIK NM_001161564 exon15 c.G1554T p.L518L ATGGTACAGTGGC 182 18 0.10 250 1 0.004 313 30 8 0.27 CLNK 116449 mdanderson.org 37 4 10567665 10567665 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_052964 exon6 c.C260A p.P87Q CGGGCTGGTAAAA 85 4 0.05 132 0 0 0 0 PCDH7 5099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 30725848 30725848 + Missense_Mutation SNP A A G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_032457 exon1 c.A2804G p.K935R AGCCTAAAAAGGA 57 21 0.37 81 0 0 49 25 0.51 FRYL 285527 broad.mit.edu 37 4 48537740 48537740 + Silent SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . FRYL NM_015030 exon48 c.C6498A p.V2166V GCACACGACATTG 337 5 0.01 459 0 0 242 11 0 0.00 . 644548 bcgsc.ca 37 4 63682551 63682551 + RNA SNP C C G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . TGGCTACGATGGC 70 13 0.19 151 0 0 0 0 BMP2K 55589 mdanderson.org 37 4 79792166 79792166 + Missense_Mutation SNP C C G rs200441916 bycluster TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 BMP2K_ENST00000502871,caecum,carcinoma,0,4 BMP2K_ENST00000502871 NM_017593 exon11 c.C1461G p.H487Q GCAGCACCACCAC 17 3 0.18 20 0 0 0 4 17 1 0.06 PDLIM5 10611 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 95496980 95496980 + Missense_Mutation SNP G G C novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . PDLIM5 NM_006457 exon5 c.G505C p.V169L GCTGCCGTCACTC 220 56 0.25 332 2 0.0060240964 76 59 15 0.25 PDE5A 8654 mdanderson.org 37 4 120423806 120423806 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_001083 exon19 c.C2336A p.A779E AGTTCTGCTATCT 44 3 0.07 67 0 0 4 0 0.00 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 125631497 125631497 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_020337 exon2 c.C170T p.S57F TTCCCAGAATTCA 161 38 0.24 281 0 0 20 7 0.35 KIAA0947 23379 mdanderson.org 37 5 5473678 5473678 + Missense_Mutation SNP C C A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_015325 exon16 c.C6230A p.P2077Q ATGCCCCGGTAGA 34 3 0.09 81 0 0 57 1 0.02 SLC25A46 91137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 110097196 110097196 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_138773 exon8 c.G971A p.S324N CTGCCAGTCTTTG 83 24 0.29 129 0 0 10 1 0.10 PCDHB7 56129 hgsc.bcm.edu 37 5 140553994 140553994 + Silent SNP G G T rs374392843 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 PCDHB7,NS,carcinoma,0,4 PCDHB7 NM_018940 exon1 c.G1578T p.A526A GCAGGCGTTCGAG 44 3 0.07 70 1 0.0142857143 0 4 11 0 0.00 FAT2 2196 bcgsc.ca 37 5 150917382 150917382 + Silent SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 FAT2,brain,atypical_teratoid-rhabdoid_tumour,0,1 FAT2 NM_001447 exon11 c.G9165A p.A3055A TTCATGCGCCCCA 151 6 0.04 198 0 0 465 1 1 0 0.00 GEMIN5 25929 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 5 154268931 154268931 + Missense_Mutation SNP T T C novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_015465 exon27 c.A4309G p.R1437G TAAGCCTTTTGGT 99 4 0.04 141 0 0 78 0 0.00 CPEB4 80315 broad.mit.edu 37 5 173383109 173383109 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . CPEB4 NM_030627 exon10 c.G2159A p.R720H GTGACCGCCCTCG 90 3 0.03 131 0 0 54 3 0 0.00 PRDM13 59336 broad.mit.edu 37 6 100061625 100061627 + In_Frame_Del DEL CCG CCG - rs370363311 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 CCG CCG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . PRDM13 NM_021620 exon4 c.1114_1116del p.372_372del GGGGACCCGCCGC 6 4 0.67 9 0 0 65 0 0 HBS1L 10767 mdanderson.org 37 6 135318078 135318078 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_006620 exon7 c.C802A p.H268N CAACATGACCTAA 45 3 0.07 80 0 0 92 0 0.00 PMS2 5395 broad.mit.edu 37 7 6017231 6017231 + Silent SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . PMS2 NM_000535 exon14 c.C2433A p.A811A CCGGCAGGCTCTG 296 84 0.28 365 0 0 88 14 5 0.36 TNS3 64759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 47343091 47343091 + Missense_Mutation SNP T T A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_022748 exon22 c.A2914T p.S972C CAGCGCTGAGGGG 37 5 0.14 42 0 0 83 16 0.19 TPST1 8460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 65705578 65705578 + Missense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_003596 exon2 c.G166T p.D56Y GGCCTGGACCTCA 140 20 0.14 133 0 0 113 29 0.26 AUTS2 26053 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 70252379 70252379 + Missense_Mutation SNP T T G novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . AUTS2 NM_015570 exon18 c.T2493G p.D831E TGTAGATAAACGA 106 19 0.18 177 2 0.011299435 173 54 17 0.31 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . CCGGGGTCCTTGA 90 4 0.04 156 1 0.0064102564 0 0 STAG3L2 0 broad.mit.edu 37 7 74306639 74306639 + RNA SNP C C G rs76222990 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . STAG3L2 . . . . CACCAACGCTCGG 8 2 0.25 22 0 0 8 13 0 0.00 AKAP9 10142 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 91691612 91691612 + Frame_Shift_Del DEL A A - novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . AKAP9 NM_147185 exon24 c.5788delG p.E1930fs CAGATGAAAAAAC 185 29 0.16 295 0 0 788 11 0 0.00 SMURF1 57154 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 98628279 98628280 + Frame_Shift_Del DEL AT AT - novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 AT AT Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . SMURF1 NM_020429 exon19 c.2202_2203del p.734_735del GGACTCATATGGT 47 13 0.28 96 0 0 58 46 0 0.00 TRPV6 55503 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142570126 142570126 + Splice_Site SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 TRPV6,NS,carcinoma,0,1 TRPV6 NM_018646 exon14 c.C1894T p.R632W CTCACCGCAGGAA 27 4 0.15 77 0 0 108 1 9 0 0.00 ZNF398 57541 mdanderson.org 37 7 148851348 148851348 + Silent SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_170686 exon2 c.G336T p.R112R GAGGCGGCTGGAG 48 3 0.06 57 0 0 19 0 0.00 WDR86-AS1 100131176 mdanderson.org 37 7 151106405 151106405 + RNA SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . GATGAGCGGGGGC 40 3 0.08 55 0 0 2 0 0.00 RBM33 155435 mdanderson.org 37 7 155473369 155473369 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_053043 exon5 c.G334T p.G112X CAATCTGGAGAAC 33 3 0.09 65 0 0 48 0 0.00 FAM83H 286077 mdanderson.org 37 8 144808833 144808833 + Missense_Mutation SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 FAM83H,NS,carcinoma,-1,1 FAM83H NM_198488 exon5 c.G2798A p.R933H CCCCTGCGCTCCG 16 2 0.13 21 0 0 -1 1 56 0 0.00 GOLGA2 2801 broad.mit.edu;ucsc.edu;mdanderson.org 37 9 131022893 131022893 + Missense_Mutation SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . GOLGA2 NM_004486 exon17 c.G1528A p.A510T CGGCCGCCCGCTC 20 5 0.25 26 0 0 69 67 8 0.12 . 0 bcgsc.ca 37 9 141038031 141038031 + RNA SNP C C T rs28468575 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . CAGGGCCGGTGTG 20 11 0.55 35 4 0.1142857143 0 0 DMD 1756 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 32456429 32456429 + Missense_Mutation SNP C C T rs146880270 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . DMD NM_004006 exon29 c.G4000A p.G1334R TGACTCCGCCATC 232 94 0.41 234 1 0.0042735043 2127 24 12 0.50 FGD1 2245 mdanderson.org 37 X 54497049 54497049 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_004463 exon3 c.C626T p.A209V ACTGCTGCAGAAC 51 3 0.06 43 0 0 82 0 0.00 AIFM1 9131 broad.mit.edu 37 X 129264042 129264042 + Missense_Mutation SNP T T C novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . AIFM1 NM_004208 exon15 c.A1673G p.E558G TAGTCCTCCCCCT 189 5 0.03 155 4 0.0258064516 75 302 1 0.00 CDR1 1038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 139866052 139866052 + Silent SNP G G A rs146276960 TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . NM_004065 exon1 c.C480T p.S160S TCTTCCGGATAAT 423 108 0.26 349 0 0 0 4 2 0.50 MAMLD1 10046 bcgsc.ca 37 X 149639635 149639635 + Missense_Mutation SNP A A T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . MAMLD1 NM_005491 exon3 c.A1790T p.Q597L AGCTGCAGCAGCA 204 8 0.04 130 1 0.0076923077 263 15 0 0.00 GABRE 2564 broad.mit.edu 37 X 151138734 151138734 + Missense_Mutation SNP C C T novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . GABRE NM_004961 exon2 c.G197A p.G66D AGTTTGCCAACTC 237 6 0.03 210 0 0 141 3 0 0.00 . 0 bcgsc.ca;mdanderson.org 37 X 152752177 152752177 + Missense_Mutation SNP G G A novel TCGA-2G-AAGM-01A-11D-A42Y-10 TCGA-2G-AAGM-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq eed38dd0-aca9-4db2-aca6-355ce6cd8537 ae823486-841b-41c3-91e4-0046a66ca6c0 . . . . . . TTGACCGGCGCCG 256 48 0.19 172 1 0.0058139535 8 1 0.13