Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV GON4L 54856 mdanderson.org 37 1 155721600 155721600 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda GON4L_ENST00000437809,lower_third,carcinoma,0,2 GON4L_ENST00000437809 NM_001037533 exon31 c.C6531A p.F2177L GATGTTGAAGGTC 81 4 0.05 73 0 0 0 2 153 0 0.00 PCP4L1 654790 broad.mit.edu 37 1 161254255 161254255 + Missense_Mutation SNP A A G novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . PCP4L1 NM_001102566 exon3 c.A191G p.K64R GGAAAAAGGATCC 392 5 0.01 396 0 0 7 5 0 0.00 NMT2 9397 mdanderson.org 37 10 15210531 15210531 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_004808 exon1 c.C81A p.D27E CTCATTGTCCCCG 43 4 0.09 44 0 0 15 0 0.00 IFIT3 3437 mdanderson.org 37 10 91098885 91098885 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001031683 exon2 c.G473T p.C158F AGGTGTGTTTTGA 36 3 0.08 45 0 0 57 0 0.00 DOCK1 1793 mdanderson.org 37 10 129249688 129249688 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001380 exon52 c.G5595T p.Q1865H CGTGCAGTGACGT 41 3 0.07 25 0 0 26 0 0.00 TSPAN4 7106 mdanderson.org 37 11 864455 864455 + Missense_Mutation SNP C C G novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda TSPAN4,NS,carcinoma,0,1 TSPAN4 NM_001025237 exon5 c.C274G p.L92V CTGCTGCTGGTGT 42 3 0.07 40 0 0 0 1 112 1 0.01 MUC6 4588 mdanderson.org 37 11 1029349 1029349 + Missense_Mutation SNP C C T rs201771202 bycluster TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_005961 exon10 c.G1154A p.R385H ACCCAGCGGCCCA 25 2 0.08 48 0 0 0 0 MRGPRF 116535 mdanderson.org 37 11 68773371 68773371 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001098515 exon3 c.C407A p.A136D CTGACGGCCGGCA 17 2 0.12 30 0 0 8 0 0.00 GAB2 9846 ucsc.edu;bcgsc.ca 37 11 77938073 77938073 + Silent SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . GAB2 NM_080491 exon4 c.C645A p.T215T GGCTCTGGTGCCC 24 4 0.17 49 0 0 63 1 0 0.00 ERC1 23085 broad.mit.edu 37 12 1292505 1292505 + Missense_Mutation SNP A A G novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . ERC1 NM_178040 exon11 c.A2075G p.K692R TGAAAAAGGACTC 737 7 0.01 382 2 0.0052356021 95 48 0 0.00 ASUN 55726 broad.mit.edu 37 12 27066606 27066606 + Missense_Mutation SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_018164 exon14 c.G1589A p.R530H ATGATACGGTATT 141 4 0.03 97 0 0 250 0 0.00 C12orf42 374470 mdanderson.org 37 12 103696285 103696285 + Silent SNP C C T rs180791755 bycluster;by1000genomes TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001099336 exon6 c.G684A p.T228T GCCGGGCGTCTGG 50 3 0.06 32 0 0 0 1 0 0.00 . 0 broad.mit.edu 37 13 25141399 25141399 + RNA DEL T T - rs372505382 TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . ATTGGCTTTTTTT 8 3 0.38 9 0 0 0 0 PCDH8 5100 mdanderson.org 37 13 53420974 53420974 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_002590 exon1 c.C1598A p.T533N CGGTAGGTGACCT 17 2 0.12 32 0 0 0 0 PAPLN 89932 mdanderson.org 37 14 73717653 73717653 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_173462 exon7 c.G504T p.Q168H CAAGCAGGAGGAC 48 3 0.06 40 0 0 1 0 0.00 C14orf80 283643 mdanderson.org 37 14 105964251 105964251 + Silent SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001134875 exon7 c.G888A p.L296L GGAGCTGCAGGCA 43 3 0.07 42 1 0.0238095238 153 0 0.00 . 0 bcgsc.ca 37 15 30297909 30297909 + RNA SNP G G C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . TCAGCAGTTGGAT 31 4 0.13 42 0 0 0 0 . 0 broad.mit.edu 37 15 30336794 30336795 + RNA INS - - C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . CCGAGGACCCCCC 6 2 0.33 5 0 0 0 0 SPTBN5 51332 mdanderson.org 37 15 42147796 42147796 + Missense_Mutation SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_016642 exon54 c.C9064T p.R3022W GCAGCCGCTCGAT 55 3 0.05 46 0 0 5 0 0.00 TGM7 116179 broad.mit.edu 37 15 43571977 43571977 + Silent SNP C C A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda TGM7,NS,carcinoma,0,2 TGM7 NM_052955 exon10 c.G1524T p.L508L CAGCAGCAGCTGC 57 6 0.11 41 3 0.0731707317 86 2 0 0 CLK3 1198 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 15 74911680 74911680 + Missense_Mutation SNP G G T rs183588535 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001130028 exon2 c.G587T p.R196L GATCTCGGTCCAG 80 4 0.05 87 0 0 102 0 0.00 TTLL13 440307 mdanderson.org 37 15 90793911 90793911 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001029964 exon2 c.G49T p.E17X TATGTTGAGGAAA 90 5 0.06 69 1 0.0144927536 0 0 . 0 broad.mit.edu 37 16 66689 66689 + Missense_Mutation SNP A A G rs201145257 TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . ACATCAATCTCAG 11 2 0.18 9 0 0 28 0 0.00 CBFA2T3 863 mdanderson.org 37 16 88943658 88943658 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_005187 exon12 c.C1688A p.A563D TCACTGGCTTTCC 45 3 0.07 40 0 0 5 0 0.00 SPEM1 374768 broad.mit.edu 37 17 7324624 7324624 + Silent SNP A A C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . SPEM1 NM_199339 exon3 c.A630C p.P210P CCCCCCACCTCCC 67 17 0.25 68 13 0.1911764706 41 0 0 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 203 11 0.05 244 14 0.0573770492 64 29 0.45 . 0 broad.mit.edu 37 17 20459733 20459734 + RNA INS - - GA novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . ATATATGGAGAGA 68 8 0.12 65 0 0 0 0 LRRC37A3 374819 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 17 62892947 62892947 + Silent SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_199340 exon3 c.C429T p.L143L AACAGGGAGCCTT 695 53 0.08 643 0 0 0 0 ABCA6 23460 mdanderson.org 37 17 67084386 67084386 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_080284 exon28 c.C3620A p.T1207N AGCAAAGTCTGAA 53 3 0.06 53 0 0 0 0 OGFOD3 79701 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 80350394 80350396 + In_Frame_Del DEL GAA GAA - novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 GAA GAA Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_024648 exon9 c.839_841del p.280_281del CGAGGTGAAGAAG 112 14 0.13 94 0 0 105 0 0.00 ROCK1 6093 mdanderson.org 37 18 18600140 18600140 + Missense_Mutation SNP A A T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_005406 exon12 c.T1333A p.L445I CTTTTAACTGCAT 27 3 0.11 65 0 0 17 0 0.00 FAM108A1 81926 hgsc.bcm.edu 37 19 1881395 1881395 + Silent SNP T T C rs199929215 byfrequency TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda FAM108A1,NS,carcinoma,0,3 FAM108A1 NM_031213 exon2 c.A171G p.R57R GGAGGCTCTCAGG 14 5 0.36 14 1 0.0714285714 0.01 0 3 63 1 0.02 SEMA6B 10501 mdanderson.org 37 19 4555021 4555021 + Missense_Mutation SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_032108 exon8 c.C649T p.R217C CGGTGCGCAGGGT 56 3 0.05 76 0 0 33 0 0.00 KANK2 25959 mdanderson.org 37 19 11303936 11303936 + Silent SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_015493 exon2 c.C820A p.R274R AGTCCCGTTCTCG 26 2 0.08 30 0 0 8 0 0.00 WIZ 58525 mdanderson.org 37 19 15535768 15535768 + Missense_Mutation SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_021241 exon6 c.A1685G p.H562R CGCAGGTGTGCCC 45 5 0.11 45 0 0 59 0 0.00 ABHD8 79575 mdanderson.org 37 19 17405202 17405202 + Silent SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_024527 exon4 c.C1044A p.P348P GCCCTCGGGCCAG 45 3 0.07 44 0 0 3 0 0.00 PGLS 25796 mdanderson.org 37 19 17622540 17622540 + Missense_Mutation SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_012088 exon1 c.C59T p.A20V TGGGTGCGGCGCT 21 2 0.10 20 0 0 31 0 0.00 MLL4 8085 mdanderson.org 37 19 36219739 36219739 + Nonsense_Mutation SNP C C T rs369588398 alternate_allele TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_014727 exon20 c.C4636T p.Q1546X AGACAGCAGGAAC 63 4 0.06 101 0 0 44 0 0.00 LRFN1 57622 broad.mit.edu 37 19 39804795 39804795 + Silent SNP T T G novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda LRFN1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 LRFN1 NM_020862 exon1 c.A1182C p.A394A CGGGGGTGCCATC 36 8 0.22 48 7 0.1458333333 59 1 3 0 0.00 TPRX1 284355 broad.mit.edu 37 19 48305622 48305622 + Missense_Mutation SNP A A G rs201007421 TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda TPRX1,caecum,carcinoma,0,2 TPRX1 NM_198479 exon2 c.T646C p.S216P GGCCTGAGATTGG 30 4 0.13 43 1 0.023255814 46 2 5 0 0.00 HAS1 3036 mdanderson.org 37 19 52216945 52216945 + Nonsense_Mutation SNP G G T rs367672882 alternate_allele TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001523 exon5 c.C1472A p.S491X CGGCCCGAGGTGC 32 3 0.09 35 0 0 6 0 0.00 ZNF547 284306 broad.mit.edu 37 19 57888687 57888687 + Missense_Mutation SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . ZNF547 NM_173631 exon4 c.T343C p.Y115H GGACTGTACACGT 138 3 0.02 151 0 0 45 1 0 0.00 ZNF814 730051 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 58388393 58388393 + Silent SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001144989 exon2 c.A54G p.E18E CACATCTTCAAAA 98 5 0.05 140 0 0 28 0 0.00 RGPD2 729857 broad.mit.edu 37 2 88125234 88125234 + Silent SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . RGPD2 NM_001078170 exon1 c.A15G p.K5K GTAGGCTTTGCTG 71 8 0.11 66 1 0.0151515152 14 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89104503 89104504 + RNA INS - - C rs149625899 bycluster;by1000genomes TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . ATTTTTTTCAGAT 11 4 0.36 10 3 0.3 0 0 PLGLA 0 broad.mit.edu 37 2 107003270 107003270 + RNA DEL A A - novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . AATGTTAAAAAAA 6 4 0.67 9 0 0 0 0 ANKMY1 51281 mdanderson.org 37 2 241492364 241492364 + Silent SNP G G A rs202087165 by1000genomes TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_017844 exon4 c.C447T p.Y149Y GGTGCCGTAGCCT 56 3 0.05 60 0 0 0 5 0 0.00 RRBP1 6238 bcgsc.ca 37 20 17639827 17639827 + Silent SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . RRBP1 . . . . CCCCTCGGCCTTC 213 10 0.05 224 2 0.0089285714 157 748 9 0.01 RRBP1 6238 bcgsc.ca 37 20 17639837 17639837 + Missense_Mutation SNP C C T rs113442443 TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . RRBP1 . . . . TTCTTGCCCTGGT 206 12 0.06 228 4 0.0175438596 157 637 43 0.07 NCOA6 23054 hgsc.bcm.edu;broad.mit.edu 37 20 33345756 33345756 + Silent SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda NCOA6,bladder,carcinoma,0,2 NCOA6 NM_014071 exon7 c.A795G p.Q265Q TTGTTGTTGCTGC 68 3 0.04 61 0 0 0 2 9 0 0.00 DYRK1A 1859 mdanderson.org 37 21 38877888 38877888 + Missense_Mutation SNP C C A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_101395 exon11 c.C1542A p.S514R GTCAAGCTCAGGT 18 2 0.11 23 0 0 37 0 0.00 LRRC66 339977 mdanderson.org 37 4 52861268 52861268 + Silent SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001024611 exon4 c.G1920A p.L640L CCCGGACAGCCTT 53 3 0.06 87 0 0 0 0 HERC6 55008 mdanderson.org 37 4 89338644 89338644 + Silent SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_017912 exon13 c.C1626T p.I542I AGCCATCATCTCT 40 3 0.08 75 0 0 8 0 0.00 FTMT 94033 mdanderson.org 37 5 121187687 121187687 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_177478 exon1 c.G29T p.R10M TCTCCAGGCACAT 24 3 0.13 22 0 0 0 0 BTN2A3P 54718 mdanderson.org 37 6 26428109 26428109 + RNA SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . CTTTATGCCCAGC 25 4 0.16 36 0 0 0 0 HIST1H2BJ 8970 broad.mit.edu 37 6 27100492 27100492 + Missense_Mutation SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda HIST1H2BJ,NS,carcinoma,+1,1 HIST1H2BJ NM_021058 exon1 c.A38G p.K13R GAGCCCTTTTTCG 136 4 0.03 109 0 0 21 1 5 0 0.00 TREML2 79865 hgsc.bcm.edu 37 6 41166123 41166123 + Missense_Mutation SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_024807 exon2 c.G100A p.G34R TCTCCCCTTCAAG 57 4 0.07 63 0 0 2 0 0.00 SLC22A7 10864 mdanderson.org 37 6 43266352 43266352 + Missense_Mutation SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_153320 exon1 c.C256T p.P86S GCCTATCCCCAGG 52 3 0.06 51 0 0 0 0 HMGN3 9324 broad.mit.edu 37 6 79912054 79912054 + Missense_Mutation SNP T T C novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . HMGN3 NM_001201362 exon5 c.A200G p.K67R TCCTGCTTTTCCT 99 4 0.04 126 0 0 8 587 0 0.00 HTR1E 3354 hgsc.bcm.edu 37 6 87725676 87725676 + Silent SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda HTR1E,NS,carcinoma,+1,4 HTR1E NM_000865 exon2 c.G624T p.A208A CCACGCGGCCAAG 98 4 0.04 118 0 0 1 4 0 0 MAD1L1 8379 mdanderson.org 37 7 1976498 1976498 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_003550 exon17 c.C1632A p.H544Q GCTCATGTGCAGC 52 3 0.06 71 0 0 106 0 0.00 RADIL 55698 mdanderson.org 37 7 4841526 4841526 + Missense_Mutation SNP C C T rs199920495 bycluster;by1000genomes TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_018059 exon12 c.G2600A p.R867H AGAGTACGCTCCG 71 4 0.06 81 0 0 0 17 0 0.00 PHKG1 5260 mdanderson.org 37 7 56148879 56148879 + Silent SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001258459 exon11 c.C1128A p.R376R GAGCCGGCGCAGA 48 3 0.06 50 0 0 0 0 GIMAP1-GIMAP5 0 mdanderson.org 37 7 150440050 150440050 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_001199577 exon6 c.G1435T p.V479F CTCAGAGTCAAAC 56 3 0.05 69 0 0 28 0 0.00 ANK1 286 broad.mit.edu;mdanderson.org 37 8 41575645 41575645 + Silent SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . ANK1 NM_001142446 exon11 c.C1284T p.A428A GATCGAGGCTCCC 48 4 0.08 42 1 0.0238095238 497 13 1 0.08 ARHGAP39 80728 mdanderson.org 37 8 145830925 145830925 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_025251 exon3 c.C75A p.N25K CCGAGTGTTCGAC 42 3 0.07 55 0 0 22 0 0.00 . 0 bcgsc.ca 37 9 69067877 69067877 + RNA SNP C C G rs7341852 bycluster TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . AAAGAGCAAAGAT 25 12 0.48 38 1 0.0263157895 8 0 0.00 CCBL1 883 mdanderson.org 37 9 131598073 131598073 + Silent SNP G G A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda CCBL1,NS,carcinoma,-2,1 CCBL1 NM_001122671 exon9 c.C840T p.C280C CGTGGGGCAGTGG 36 3 0.08 45 1 0.0222222222 -2 1 2 0 0.00 REXO4 57109 mdanderson.org 37 9 136277900 136277900 + Silent SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . NM_020385 exon3 c.C714A p.G238G GTACCCGCCGAAG 23 2 0.09 20 0 0 103 0 0.00 TBC1D25 4943 broad.mit.edu 37 X 48418342 48418342 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . TBC1D25 NM_002536 exon6 c.G1046T p.G349V ATGAGGGCCATGC 41 3 0.07 51 0 0 70 16 0 0.00 TMEM185A 84548 broad.mit.edu 37 X 148690471 148690471 + Missense_Mutation SNP C C T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . TMEM185A NM_032508 exon3 c.G266A p.G89D TGGATGCCCACTG 182 4 0.02 169 0 0 26 17 0 0.00 GYG2P1 352887 hgsc.bcm.edu 37 Y 14532067 14532067 + RNA SNP T T A novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . CACCCATGCCAGT 60 7 0.12 66 0 0 0 0 FOLR3 2352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71850732 71850732 + Missense_Mutation SNP G G T novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . TTCAAGGTCAGCA 185 49 0.26 161 0 0 2 1 0.50 SEPHS2 22928 mdanderson.org 37 16 30456678 30456678 + Missense_Mutation SNP A A G novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . AGGGGGATGACGC 44 3 0.07 36 0 0 253 1 0.00 TSPAN10 83882 mdanderson.org 37 17 79612324 79612324 + Missense_Mutation SNP C C G novel TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda TSPAN10_ENST00000328585,caecum,carcinoma,0,1 TSPAN10_ENST00000328585 . . . . GGGGGGCCCCTGC 35 3 0.09 38 0 0 0 1 0 0 MAPK8IP2 23542 mdanderson.org 37 22 51044140 51044140 + Silent SNP C C T rs374360769 TCGA-2G-AAGN-01A-11D-A42Y-10 TCGA-2G-AAGN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c75867f5-f606-4d61-8abb-24d385f39af4 dd5f28de-d18f-48ec-838e-d8e280234eda . . . . . . GGTGCCCGGCCCT 40 3 0.08 34 0 0 48 0 0.00