Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SKI 6497 broad.mit.edu 37 1 2160966 2160966 + Missense_Mutation SNP A A C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . SKI NM_003036 exon1 c.A761C p.Y254S TCATGTACCCGCC 30 6 0.20 27 3 0.1111111111 33 42 1 0.02 PER3 8863 mdanderson.org 37 1 7902773 7902773 + Silent SNP G G A rs144281505 TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_016831 exon21 c.G3564A p.A1188A TGGTGCGGCCACA 63 3 0.05 101 0 0 0 10 0 0.00 UBE4B 10277 mdanderson.org 37 1 10182134 10182134 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001105562 exon10 c.G1554T p.Q518H CAAGCAGGTACGG 54 3 0.06 101 0 0 36 0 0.00 EPB41 2035 broad.mit.edu 37 1 29379772 29379772 + Missense_Mutation SNP A A G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . EPB41 NM_001166006 exon12 c.A1793G p.K598R TGAAAAAGGAAGA 360 7 0.02 423 0 0 118 58 0 0.00 PRKAA2 5563 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 57111084 57111084 + Missense_Mutation SNP C C A rs200643979 by1000genomes;alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_006252 exon1 c.C24A p.D8E GCACGACGGGCGG 109 9 0.08 100 0 0 0 0 SRGAP2D 0 broad.mit.edu 37 1 121116645 121116645 + RNA DEL T T - novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . CCCCCCTTTAAAA 170 13 0.08 157 0 0 0 0 OR2B11 127623 mdanderson.org 37 1 247614868 247614868 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001004492 exon1 c.C417A p.L139L GTGCATGAGAACG 43 3 0.07 57 0 0 0 0 WDFY4 57705 mdanderson.org 37 10 50165215 50165215 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_020945 exon52 c.G8019T p.V2673V CAGTGTGAAGAGC 40 3 0.08 87 0 0 19 0 0.00 FAM170B 170370 mdanderson.org 37 10 50339897 50339897 + Missense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001164484 exon2 c.C613T p.R205C CGCAGCGCACCCC 19 3 0.16 19 0 0 1 0 0.00 C10orf128 170371 mdanderson.org 37 10 50374968 50374968 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001010863 exon3 c.C184A p.H62N ATAAGTGCCTCCT 45 3 0.07 65 0 0 32 0 0.00 MSMB 4477 mdanderson.org 37 10 51562390 51562390 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_138634 exon3 c.G229T p.G77X GTGAATGGATAAT 48 3 0.06 45 0 0 1 0 0.00 HHEX 3087 broad.mit.edu 37 10 94449787 94449787 + Missense_Mutation SNP T T G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . HHEX NM_002729 exon1 c.T44G p.V15G TGGGGGTGCCGCT 44 29 0.66 40 13 0.325 22 4 0 0.00 MYOD1 4654 mdanderson.org 37 11 17741614 17741614 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_002478 exon1 c.G285T p.L95L CCTACTGTGGGCC 39 3 0.08 42 0 0 0 0 ANO3 63982 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 26547227 26547227 + Splice_Site SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . ANO3 NM_031418 exon7 c.737+1G>T . GGGCAGGTTGGTG 106 31 0.29 182 1 0.0054945055 145 0 0 AMBRA1 55626 broad.mit.edu 37 11 46439570 46439570 + Silent SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . AMBRA1 NM_001267782 exon17 c.C3018T p.A1006A CTGGTCGGCAGGC 87 3 0.03 92 0 0 201 49 0 0.00 OR10S1 219873 mdanderson.org 37 11 123848345 123848345 + Missense_Mutation SNP G G T rs201821946 alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001004474 exon1 c.C54A p.N18K AGTCTGGTTGGGG 10 2 0.20 18 0 0 0 0 ADAMTS15 170689 broad.mit.edu 37 11 130343024 130343024 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 ADAMTS15,NS,carcinoma,0,3 ADAMTS15 NM_139055 exon8 c.G2161T p.G721W CTGATCGGGGATG 121 3 0.02 137 0 0 103 3 4 0 0.00 LPAR5 57121 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 6729744 6729744 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001142961 exon2 c.C671A p.T224K CTCTGCGTGGCGT 108 11 0.10 58 0 0 9 0 0.00 PDE3A 0 broad.mit.edu 37 12 20522114 20522115 + RNA INS - - GCGT rs138187101 bycluster;by1000genomes TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . PDE3A . . . . GGGAAGAGCGTGC 24 11 0.46 9 0 0 184 6 0 0.00 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 43771347 43771347 + Missense_Mutation SNP A A G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_025003 exon32 c.T4816C p.F1606L AACTAAATCCACA 133 23 0.17 183 0 0 0 0 PROSER1 80209 mdanderson.org 37 13 39588565 39588565 + Missense_Mutation SNP G G T rs141612774 bycluster;byfrequency;alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_025138 exon11 c.C824A p.P275H GTTGAAGGATTAG 42 3 0.07 65 0 0 52 0 0.00 DZIP1 22873 mdanderson.org 37 13 96239894 96239894 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 DZIP1_ENST00000347108,NS,carcinoma,0,3 DZIP1_ENST00000347108 NM_198968 exon20 c.C2117A p.P706Q TTTTGTGGTGGCG 119 5 0.04 156 0 0 0 3 36 0 0.00 ARID4A 5926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 58832861 58832861 + Missense_Mutation SNP C C G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 ARID4A_ENST00000355431,NS,carcinoma,-2,2 ARID4A_ENST00000355431 NM_002892 exon22 c.C3436G p.P1146A ATATCCCCGCACA 152 31 0.20 172 0 0 -2 2 28 8 0.29 LOC646278 0 broad.mit.edu 37 15 29052465 29052465 + RNA DEL T T - novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . TATTTATTTTTTT 6 3 0.50 9 0 0 0 0 EIF3J 8669 broad.mit.edu 37 15 44829571 44829571 + Silent SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . EIF3J NM_003758 exon2 c.C93T p.G31G GGGCGGCGGCACT 74 3 0.04 78 0 0 29 40 0 0.00 SPG11 80208 mdanderson.org 37 15 44955776 44955776 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_025137 exon1 c.C70A p.R24R GAACCCGCCCCAT 23 2 0.09 33 0 0 4 0 0.00 RASGRF1 5923 mdanderson.org 37 15 79382584 79382584 + Missense_Mutation SNP T T C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_002891 exon1 c.A257G p.K86R GGCTCCTTGGCCG 26 2 0.08 42 0 0 0 0 LRRK1 79705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 101555582 101555582 + Silent SNP T T A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_024652 exon12 c.T1584A p.G528G CAGAGGTCGCCAG 83 20 0.24 107 0 0 9 2 0.22 HN1L 90861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 1748931 1748931 + Missense_Mutation SNP C C G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 HN1L,NS,carcinoma,-1,1 HN1L NM_144570 exon5 c.C505G p.P169A CTGGGGCCGCGGC 61 8 0.13 55 0 0 -1 1 145 45 0.31 TBL3 10607 mdanderson.org 37 16 2027606 2027606 + Missense_Mutation SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_006453 exon17 c.C1834T p.H612Y GGGCTGCACTGCA 70 4 0.06 70 0 0 137 0 0.00 CREBBP 1387 mdanderson.org 37 16 3777828 3777828 + Missense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_004380 exon31 c.C7220T p.A2407V AGCATTGCACTCT 70 5 0.07 79 0 0 222 0 0.00 KAT8 84148 mdanderson.org 37 16 31142271 31142271 + Silent SNP A A T rs17855606 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_182958 exon10 c.A1362T p.I454I CAGTATATGGACT 32 3 0.09 29 0 0 1 0 0.00 FTSJD1 0 ucsc.edu 37 16 71317853 71317853 + Silent SNP A A C rs200001480 byfrequency TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . FTSJD1 NM_018348 exon3 c.T1971G p.G657G GATCAAACCAGCC 69 4 0.06 95 6 0.0631578947 70 39 5 0.13 ZFPM1 161882 ucsc.edu;bcgsc.ca 37 16 88552419 88552419 + Missense_Mutation SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . ZFPM1 NM_153813 exon2 c.C113T p.T38M AGGCCACGGCACC 38 4 0.11 61 0 0 32 26 0 0.00 CDK10 8558 mdanderson.org 37 16 89761464 89761464 + Silent SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_052988 exon11 c.C918T p.Y306Y CATGTACGACCCT 56 3 0.05 46 0 0 92 0 0.00 SRCIN1 80725 mdanderson.org 37 17 36705442 36705442 + Missense_Mutation SNP C C A rs372264724 alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_025248 exon16 c.G2967T p.E989D GGTCAACTCATCT 27 3 0.11 35 0 0 7 0 0.00 PYY 5697 broad.mit.edu 37 17 42030831 42030831 + Silent SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . PYY NM_004160 exon5 c.G21A p.P7P GGGCCACGGCCTG 152 6 0.04 136 0 0 11 37 0 0.00 RNF126P1 376412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 55123140 55123140 + RNA SNP A A C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . TCTTTGACGACAG 48 7 0.15 40 0 0 1 0 0.00 MRC2 9902 mdanderson.org 37 17 60742301 60742301 + Missense_Mutation SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_006039 exon2 c.C511T p.P171S GCTCTGCCCTACC 21 2 0.10 27 0 0 101 0 0.00 LAMA1 284217 broad.mit.edu 37 18 7023227 7023227 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . LAMA1 NM_005559 exon19 c.C2637A p.G879G GTGGGCGCCATCT 104 4 0.04 99 0 0 458 15 0 0.00 KATNAL2 83473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 44584611 44584611 + Missense_Mutation SNP T T C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_031303 exon4 c.T122C p.M41T GGATGATGAACGA 81 13 0.16 103 0 0 3 2 0.67 APC2 10297 mdanderson.org 37 19 1470177 1470177 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_005883 exon15 c.G6877T p.A2293S GAGAAAGCCCCGG 38 3 0.08 44 0 0 0 0 ZNF555 148254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2853172 2853172 + Missense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_152791 exon4 c.G1109A p.C370Y ACGAATGCAAACA 115 12 0.10 183 0 0 5 3 0.60 LPHN1 22859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14273727 14273727 + Missense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001008701 exon6 c.C901T p.R301C CAAAGCGCAGTGT 63 12 0.19 70 0 0 46 16 0.35 CHERP 10523 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 16636107 16636107 + Missense_Mutation SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_006387 exon10 c.G1687A p.E563K GCCGCTCGAAGGG 85 14 0.16 75 0 0 80 28 0.35 ZNF14 7561 broad.mit.edu 37 19 19823097 19823097 + Silent SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 ZNF14,NS,carcinoma,-1,1 ZNF14 NM_021030 exon4 c.G993A p.G331G TCGAGCCCCAGTG 101 3 0.03 143 0 0 89 1 4 0 0.00 APOB 338 broad.mit.edu 37 2 21266752 21266754 + In_Frame_Del DEL CAG CAG - novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . APOB NM_000384 exon1 c.64_66del p.22_22del GCCCGCCAGCAGC 6 2 0.33 4 0 0 761 0 0 SCN7A 6332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 167313390 167313390 + Missense_Mutation SNP T T A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_002976 exon10 c.A1280T p.E427V TCTGTTTCATTTC 59 11 0.19 82 0 0 3 1 0.33 . 0 bcgsc.ca 37 2 186412033 186412033 + RNA SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . TGCTTCCGATTTA 106 15 0.14 136 0 0 8 0 0.00 SMARCAL1 50485 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 217329366 217329366 + Missense_Mutation SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_014140 exon13 c.C2117T p.A706V GAACAGCTGAAGC 68 10 0.15 70 0 0 63 14 0.22 ZCCHC3 85364 broad.mit.edu 37 20 279150 279150 + Missense_Mutation SNP A A G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . ZCCHC3 NM_033089 exon1 c.A923G p.E308G AGGGGGAGGGCGG 66 3 0.05 110 3 0.0272727273 20 12 0 0.00 NDRG3 57446 broad.mit.edu;ucsc.edu;mdanderson.org 37 20 35284911 35284911 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . NDRG3 NM_032013 exon14 c.C883T p.Q295X CTACCTGGGGCAG 170 55 0.32 210 1 0.0047619048 32 26 0 0.00 ZMYND8 23613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45874864 45874864 + Silent SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_183047 exon14 c.C2172T p.G724G GTCCAGGCCCAAA 184 32 0.17 211 0 0 72 27 0.38 MIR3648 0 broad.mit.edu 37 21 9825838 9825839 + RNA INS - - GCG rs372061766 bycluster TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . CGCGACTGCGGCG 11 8 0.73 7 0 0 0 0 CBS 875 mdanderson.org 37 21 44478969 44478969 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001178009 exon14 c.C1333A p.Q445K GCGCCTGGTCGAA 24 3 0.13 32 0 0 174 0 0.00 KREMEN1 83999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29521294 29521294 + Missense_Mutation SNP A A G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_001039570 exon5 c.A521G p.N174S GAAACAATCCTGA 80 17 0.21 116 0 0 12 4 0.33 TMEM115 11070 mdanderson.org 37 3 50396199 50396199 + Missense_Mutation SNP A A G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_007024 exon1 c.T296C p.L99P AAGATGAGCAGCT 47 3 0.06 52 0 0 116 0 0.00 RBM15B 29890 broad.mit.edu;bcgsc.ca 37 3 51430005 51430023 + Frame_Shift_Del DEL GGGCTAAGGTGGCCATGTC GGGCTAAGGTGGCCATGTC - novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 GGGCTAAGGTGGCCATGTC GGGCTAAGGTGGCCATGTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 RBM15B,colon,carcinoma,0,1 RBM15B NM_013286 exon1 c.1175_1193del p.392_398del CCCATAGGGCTAA 109 9 0.08 146 0 0 47 1 64 0 0.00 PARP9 83666 broad.mit.edu 37 3 122255025 122255025 + Silent SNP C C G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . PARP9 NM_031458 exon10 c.G2175C p.S725S AGGTGTCGAGTAC 277 6 0.02 283 0 0 72 140 6 0.04 rescued with RNA-seq CLSTN2 64084 mdanderson.org 37 3 140281041 140281041 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_022131 exon13 c.G2103T p.V701V TTTGGTGATCGGA 69 4 0.06 100 0 0 4 0 0.00 CHST2 9435 broad.mit.edu 37 3 142840095 142840095 + Missense_Mutation SNP T T G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . CHST2 NM_004267 exon2 c.T437G p.V146G CGGGGGTTGCGGC 45 12 0.27 44 13 0.2954545455 67 34 2 0.06 PRSS12 8492 broad.mit.edu 37 4 119252936 119252936 + Silent SNP T T G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . PRSS12 NM_003619 exon4 c.A906C p.G302G AACGGTTCCCCAC 302 8 0.03 372 3 0.0080645161 71 10 0 0.00 SLC6A19 340024 hgsc.bcm.edu 37 5 1216727 1216727 + Silent SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 SLC6A19,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 SLC6A19 NM_001003841 exon7 c.G942T p.S314S CACATCGGTGTAT 82 4 0.05 124 0 0 0 1 4 0 0.00 PCDHGB1 0 broad.mit.edu 37 5 140730563 140730563 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . PCDHGB1 NM_018922 exon1 c.G736T p.V246F TACAGGGTTAGCC 114 3 0.03 135 0 0 198 0 0 TBC1D9B 23061 mdanderson.org 37 5 179306156 179306156 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_015043 exon9 c.C1458A p.F486L CTCGAAGAAGTGG 12 2 0.17 27 0 0 90 0 0.00 GNB2L1 10399 broad.mit.edu;mdanderson.org 37 5 180668627 180668627 + Silent SNP C C A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . GNB2L1 NM_006098 exon3 c.G294T p.T98T TCGCCTCGTGGTG 45 5 0.11 67 0 0 22 2875 862 0.30 BTN2A2 10385 hgsc.bcm.edu 37 6 26384092 26384092 + Missense_Mutation SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 BTN2A2_ENST00000432533,bladder,carcinoma,-1,2 BTN2A2_ENST00000432533 NM_181531 exon2 c.C43T p.L15F GCCTCCCTCCTCC 100 5 0.05 92 1 0.0108695652 -1 2 36 0 0.00 BTN2A3P 0 broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 61 4 0.07 77 1 0.012987013 9 9 0 0.00 NKAPL 222698 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 28228082 28228082 + Silent SNP T T C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 NKAPL,NS,carcinoma,0,1 NKAPL NM_001007531 exon1 c.T933C p.Y311Y TGAGTATGTAAAA 113 11 0.10 115 0 0 0 1 4 0 0.00 TNFAIP3 7128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 138200293 138200293 + Missense_Mutation SNP G G C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 TNFAIP3,rectum,carcinoma,-1,2 TNFAIP3 NM_001270507 exon7 c.G1711C p.V571L CGGCTCGTCCGGA 52 9 0.17 65 2 0.0307692308 -1 2 56 8 0.14 HIVEP2 3097 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 143091135 143091135 + Missense_Mutation SNP T T C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . HIVEP2 NM_006734 exon5 c.A4741G p.S1581G GTGGGCTCATGCT 159 32 0.20 165 1 0.0060606061 225 8 2 0.25 CREB5 9586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 28547354 28547354 + Missense_Mutation SNP G G A rs142741982 alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 CREB5,rectum,carcinoma,+1,1 CREB5 NM_182898 exon4 c.G290A p.R97Q GCAAGCGGGTAGG 71 11 0.15 91 0 0 0 1 1 0 0 VWC2 375567 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 49815586 49815586 + Silent SNP G G C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_198570 exon2 c.G555C p.P185P GGGGCCGCTGTGC 22 5 0.23 16 0 0 0 0 TMEM229A 730130 broad.mit.edu;mdanderson.org 37 7 123672968 123672968 + Missense_Mutation SNP C C G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . TMEM229A NM_001136002 exon1 c.G90C p.E30D TGCCGCCTCGCTT 16 3 0.19 22 0 0 31 0 0 ZC3HC1 51530 mdanderson.org 37 7 129691202 129691202 + Missense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_016478 exon1 c.C5T p.A2V GGCGCCGCCATCT 95 5 0.05 119 0 0 8 0 0.00 SSPO 23145 mdanderson.org 37 7 149509500 149509500 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_198455 exon69 c.G9898T p.V3300F GGGGAGGTCTGCC 19 2 0.11 27 1 0.037037037 0 0 FAM83A 84985 broad.mit.edu 37 8 124219616 124219616 + Silent SNP C C G novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . FAM83A NM_032899 exon4 c.C993G p.S331S CACGTCCTCCAAC 58 3 0.05 68 0 0 64 0 0 . 0 broad.mit.edu 37 9 66459814 66459814 + RNA DEL T T - novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . GATTTGTCCCCAG 6 2 0.33 6 0 0 4 0 0.00 TRPM6 140803 mdanderson.org 37 9 77390989 77390989 + Missense_Mutation SNP G G T rs376920206 alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_017662 exon24 c.C3213A p.N1071K GTAAACGTTGCTG 53 3 0.06 76 0 0 0 0 ANKS6 203286 hgsc.bcm.edu 37 9 101546298 101546298 + Missense_Mutation SNP G G T rs376042242 alternate_allele TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 ANKS6,NS,carcinoma,-1,1 ANKS6 NM_173551 exon4 c.C1049A p.A350E ACATCCGCGTGCC 49 2 0.04 61 0 0 -1 1 29 0 0.00 LRRC37A5P 0 broad.mit.edu 37 9 114370697 114370698 + RNA INS - - A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . TAGTGAGAAAAAA 6 3 0.50 4 0 0 0 0 SURF6 6838 bcgsc.ca 37 9 136198944 136198944 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . SURF6 NM_006753 exon5 c.C847A p.R283S CGTCACGGATCTT 44 4 0.09 50 0 0 32 126 0 0.00 ARSF 416 broad.mit.edu 37 X 3030575 3030575 + Missense_Mutation SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . ARSF NM_004042 exon11 c.G1751A p.R584Q AGCCTCGGGGTCC 141 6 0.04 70 0 0 97 1 0 0.00 RAI2 10742 broad.mit.edu 37 X 17819967 17819967 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . RAI2 NM_001172739 exon3 c.C164A p.A55D GATGGGGCTGGCA 208 5 0.02 120 0 0 66 25 0 0.00 CHDC2 286464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 36091305 36091305 + Silent SNP A A C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_173695 exon4 c.A240C p.S80S AACATCAGAGGAA 363 177 0.49 287 0 0 0 0 ZNF182 7569 mdanderson.org 37 X 47847944 47847944 + Missense_Mutation SNP G G T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . NM_006962 exon4 c.C52A p.Q18K CCTTCTGCCATGA 38 3 0.08 29 0 0 0 0 ATRX 546 broad.mit.edu 37 X 76938655 76938655 + Missense_Mutation SNP T T C novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . ATRX NM_000489 exon9 c.A2093G p.K698R TTATCCTTTTTTC 140 3 0.02 81 0 0 833 36 0 0.00 . 648283 bcgsc.ca 37 X 83004277 83004277 + RNA SNP A A T novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . ATCCAAATTAGCT 36 7 0.19 34 0 0 1 0 0.00 . 359996 bcgsc.ca 37 Y 4669795 4669795 + RNA SNP G G A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . AGTCCTGCTGCTG 20 4 0.20 24 0 0 0 0 SEPHS2 22928 mdanderson.org 37 16 30456664 30456664 + Missense_Mutation SNP C C A novel TCGA-2G-AAGP-01A-11D-A42Y-10 TCGA-2G-AAGP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79a36367-9e68-4e76-af66-085a68c13add 2f54fd19-65e9-4992-a984-fc446f349244 . . . . . . GGCCCCCGTGCCT 38 3 0.08 44 0 0 134 0 0.00