Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PGD 5226 mdanderson.org 37 1 10459762 10459762 + Splice_Site SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_002631 exon2 c.84+1G>T . TTTGTGGTAAGCG 37 3 0.08 17 0 0 0 0 HTR1D 3352 mdanderson.org 37 1 23520067 23520067 + Missense_Mutation SNP G G T rs148842291 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_000864 exon1 c.C646A p.L216I CATATAGGATGAT 47 3 0.06 64 0 0 0 0 NCDN 23154 mdanderson.org 37 1 36026280 36026280 + Silent SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_014284 exon3 c.C528T p.G176G TGGTGGCACCGTG 45 3 0.07 45 0 0 37 0 0.00 CMPK1 51727 mdanderson.org 37 1 47840594 47840594 + Missense_Mutation SNP G G A rs149887048 TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_016308 exon4 c.G485A p.R162Q TTGAACGATGTCT 54 3 0.06 60 0 0 0 219 0 0.00 ABCD3 5825 mdanderson.org 37 1 94980702 94980702 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_002858 exon22 c.G1846T p.V616F TATTAGGTTGGCA 40 3 0.08 49 0 0 46 0 0.00 . 0 broad.mit.edu 37 1 143392853 143392853 + RNA DEL T T - novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . . . . . CTCTCATTTTTTT 7 3 0.43 6 0 0 0 0 ETV3 2117 broad.mit.edu 37 1 157095428 157095428 + Silent SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . ETV3 NM_001145312 exon5 c.T744C p.A248A AGAGACAGCGAAG 148 4 0.03 139 0 0 50 16 0 0.00 SPTA1 6708 broad.mit.edu 37 1 158607904 158607904 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . SPTA1 NM_003126 exon36 c.C5108A p.A1703D TGTGCAGCTGCCA 111 5 0.05 92 0 0 720 0 0 VSIG8 391123 mdanderson.org 37 1 159824642 159824642 + Silent SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001013661 exon7 c.C1146T p.C382C CGCTTCGCAGGCG 16 2 0.13 9 0 0 0 0 MPP7 143098 bcgsc.ca 37 10 28438946 28438946 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . MPP7 NM_173496 exon6 c.C199A p.P67T GAATGGGCACCGG 23 4 0.17 49 0 0 60 7 0 0.00 EPC1 80314 mdanderson.org 37 10 32576132 32576132 + Missense_Mutation SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001272004 exon7 c.C1046T p.A349V GCAGCGGCAGACG 39 3 0.08 56 0 0 40 0 0.00 ZMIZ1 57178 mdanderson.org 37 10 81067288 81067288 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_020338 exon23 c.C2795T p.A932V ACATGGCCGCCCT 49 3 0.06 58 0 0 61 0 0.00 SLIT1 6585 broad.mit.edu 37 10 98781011 98781011 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . SLIT1 NM_003061 exon26 c.C2742A p.C914X ACCTTGGCATTCA 122 4 0.03 164 0 0 154 0 0 PSD 5662 mdanderson.org 37 10 104171931 104171931 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f PSD_ENST00000020673,NS,carcinoma,+1,2 PSD_ENST00000020673 NM_001270965 exon8 c.C1802A p.T601K ATGCCCGTGAAGA 54 3 0.06 98 0 0 1 2 0 0 WDR96 80217 mdanderson.org 37 10 105932290 105932290 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_025145 exon20 c.C2464A p.L822M TATTCAGAATCTG 49 3 0.06 88 0 0 0 0 TUB 7275 mdanderson.org 37 11 8118340 8118340 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_003320 exon7 c.G839T p.R280M CTAGCAGGAAGTC 38 3 0.08 43 0 0 13 0 0.00 MS4A15 219995 mdanderson.org 37 11 60531240 60531240 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001098835 exon2 c.G34T p.V12F GTGTTTGTTGTCA 47 3 0.06 63 0 0 0 0 C1R 715 broad.mit.edu 37 12 7188347 7188347 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . C1R . . . . CGGATGGGGTGAT 204 6 0.03 92 0 0 49 2165 1 0.00 PPHLN1 51535 mdanderson.org 37 12 42729726 42729726 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_201440 exon3 c.G43T p.E15X CGATATGAATATG 47 3 0.06 70 0 0 50 0 0.00 STAC3 246329 broad.mit.edu 37 12 57642942 57642942 + Silent SNP C C T rs143709026 TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f STAC3,caecum,carcinoma,0,1 STAC3 NM_145064 exon3 c.G216A p.E72E CTCCTCCTCTTCT 45 3 0.07 48 0 0 32 1 2 0 0.00 NAV3 89795 broad.mit.edu 37 12 78574724 78574724 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f NAV3,caecum,carcinoma,+1,1 NAV3 NM_014903 exon29 c.G5525T p.R1842L CTACTCGGCCACC 174 5 0.03 167 0 0 506 1 10 0 0.00 KDM2B 84678 mdanderson.org 37 12 121878619 121878619 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_032590 exon21 c.G3610A p.G1204S ACTCACCTGGCCT 55 3 0.05 47 0 0 49 0 0.00 BRI3BP 140707 broad.mit.edu 37 12 125478382 125478384 + In_Frame_Del DEL CTG CTG - rs374894130 TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 CTG CTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . BRI3BP NM_080626 exon1 c.46_48del p.16_16del GGGCTCCTGCTGC 6 2 0.33 14 0 0 18 0 0 IPO5 3843 bcgsc.ca;mdanderson.org 37 13 98634777 98634777 + Silent SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . IPO5 NM_002271 exon5 c.A165G p.P55P TATCCCAGGCCAG 61 5 0.08 79 0 0 90 47 0 0.00 PNN 5411 mdanderson.org 37 14 39644508 39644508 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_002687 exon1 c.C25T p.Q9X ACTTTGCAGGAAC 52 3 0.06 67 0 0 61 0 0.00 DCAF5 8816 mdanderson.org 37 14 69521081 69521081 + Silent SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f DCAF5,bladder,carcinoma,-1,1 DCAF5 NM_003861 exon9 c.T2322C p.P774P TTCAAAAGGGTGC 47 3 0.06 45 0 0 -1 1 76 0 0.00 ACOT2 10965 broad.mit.edu 37 14 74041690 74041690 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . ACOT2 NM_006821 exon3 c.G925T p.G309C CTGAAGGGCATCA 324 4 0.01 350 1 0.0028571429 24 155 0 0.00 FAN1 22909 mdanderson.org 37 15 31217994 31217994 + Silent SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_014967 exon10 c.G2340T p.V780V TCAGGTGACCATC 38 3 0.08 35 0 0 21 0 0.00 EIF2AK4 440275 mdanderson.org 37 15 40268993 40268993 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001013703 exon12 c.G2197T p.D733Y AGCGATGACGAGG 35 3 0.09 30 0 0 21 0 0.00 C15orf61 145853 mdanderson.org 37 15 67813654 67813654 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001143936 exon1 c.G68T p.R23L CCTCGCGCGCCGC 13 2 0.15 8 0 0 3 0 0.00 CSK 1445 mdanderson.org 37 15 75091663 75091663 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_004383 exon5 c.C293T p.P98L TGTACCCGCCGGA 42 3 0.07 46 0 0 132 0 0.00 POLG 5428 mdanderson.org 37 15 89876861 89876861 + Missense_Mutation SNP C C T rs74382477 bycluster TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001126131 exon2 c.G125A p.R42Q TGCTGCCGCCGCC 19 5 0.26 17 0 0 13 0 0.00 ADAMTS17 170691 broad.mit.edu;mdanderson.org 37 15 100882053 100882053 + Missense_Mutation SNP G G C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . ADAMTS17 NM_139057 exon1 c.C52G p.L18V AAACCAGCAGCAG 48 3 0.06 47 0 0 127 5 0 0.00 TMEM8A 58986 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 422631 422631 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . TMEM8A NM_021259 exon12 c.G1999A p.V667M TGATCACGAAGGC 20 4 0.20 37 0 0 49 70 27 0.39 THAP11 57215 mdanderson.org 37 16 67876485 67876485 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_020457 exon1 c.G28T p.G10C GTGCCAGGCTGCT 44 3 0.07 43 0 0 25 0 0.00 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3937397 3937397 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_015113 exon40 c.C6496A p.L2166M CAAACAGGTTGTG 150 15 0.10 124 0 0 24 3 0.13 DHRS7C 201140 broad.mit.edu;mdanderson.org 37 17 9674864 9674864 + Missense_Mutation SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . DHRS7C NM_001220493 exon6 c.T880C p.F294L CGAAAAAGAACTC 80 4 0.05 54 0 0 34 1 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 203 9 0.04 211 8 0.0379146919 31 19 0.61 . 201288 bcgsc.ca 37 17 18404316 18404316 + RNA SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . . . . . GAGGATGGGAGGG 68 18 0.26 62 0 0 0 0 ARMC7 79637 mdanderson.org 37 17 73106427 73106427 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_024585 exon1 c.G44T p.G15V GGCTGGGATACCT 65 4 0.06 66 0 0 9 0 0.00 TBCD 6904 mdanderson.org 37 17 80887305 80887305 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_005993 exon32 c.G2920T p.G974W CTCCTTGGGCTGC 47 3 0.06 55 0 0 179 0 0.00 . 0 bcgsc.ca 37 18 1927980 1927980 + RNA SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . . . . . ATTAAAATGAACA 13 3 0.23 22 0 0 0 0 MEX3C 51320 mdanderson.org 37 18 48703101 48703101 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_016626 exon2 c.C1600A p.R534S CTCTGCGCTGAGT 61 4 0.07 99 0 0 22 0 0.00 C19orf26 255057 mdanderson.org 37 19 1236073 1236073 + Silent SNP T T C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_152769 exon2 c.A27G p.T9T GGCGGCTGTGGCC 15 2 0.13 14 0 0 1 0 0.00 PDE4A 5141 mdanderson.org 37 19 10563985 10563985 + Silent SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_006202 exon1 c.C46T p.L16L CCTTGGCTGGTGG 48 3 0.06 31 0 0 0 0 ISYNA1 51477 mdanderson.org 37 19 18548463 18548463 + Silent SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_016368 exon3 c.C228A p.A76A CACCGCGGCGGTG 15 2 0.13 14 0 0 72 0 0.00 CILP2 148113 broad.mit.edu 37 19 19656233 19656233 + Missense_Mutation SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f CILP2,NS,neuroblastoma,-1,1 CILP2 NM_153221 exon8 c.G2879A p.G960D CAGGGGGCAGCCA 57 3 0.05 48 0 0 84 1 8 0 0.00 HPN 3249 mdanderson.org 37 19 35551260 35551260 + Missense_Mutation SNP G G A rs145117053 bycluster;by1000genomes TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_182983 exon8 c.G464A p.R155H GTGGCCGCAGGAA 32 3 0.09 38 0 0 0 2 0 0.00 MLL4 0 broad.mit.edu 37 19 36223857 36223857 + Missense_Mutation SNP T T C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . MLL4 NM_014727 exon28 c.T6407C p.L2136P AGTCACTCCCCCC 216 6 0.03 189 1 0.0052910053 229 17 0 0.00 CLASRP 11129 mdanderson.org 37 19 45572358 45572358 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_007056 exon17 c.G1803T p.M601I AAAGATGATCCAG 71 4 0.06 61 0 0 134 0 0.00 HEATR5B 54497 broad.mit.edu;mdanderson.org 37 2 37234397 37234397 + Silent SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . HEATR5B NM_019024 exon29 c.C4573A p.R1525R AATTCCGATAGTG 110 5 0.05 113 0 0 185 47 0 0.00 WBP1 23559 broad.mit.edu 37 2 74687702 74687702 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . WBP1 NM_012477 exon4 c.C704T p.A235V TTAGTGCCACCCT 137 4 0.03 99 0 0 35 327 0 0.00 . 0 bcgsc.ca 37 2 106870091 106870091 + RNA SNP G G A rs55850116 bycluster TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . . . . . AAGCCCGTTCCAG 15 9 0.60 34 0 0 0 0 SMPD4 55627 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 130910391 130910391 + Missense_Mutation SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_017951 exon20 c.C2338T p.L780F CTGTGAGGTGGTA 73 25 0.34 58 0 0 102 29 0.28 FN1 2335 broad.mit.edu 37 2 216288081 216288081 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . FN1 NM_212476 exon9 c.C1385A p.P462H GCCATGGGGCAGA 163 6 0.04 141 1 0.0070921986 521 638 0 0.00 TBC1D20 128637 broad.mit.edu 37 20 425725 425725 + Missense_Mutation SNP G G C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . TBC1D20 NM_144628 exon3 c.C306G p.D102E CCGGACGTCCAGC 140 3 0.02 145 0 0 34 40 2 0.05 rescued with RNA-seq FRG1B 0 broad.mit.edu;bcgsc.ca 37 20 29633902 29633902 + Missense_Mutation SNP C C A rs145072022 TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . FRG1B . . . . AGAGAACCAAATT 150 8 0.05 189 1 0.0052910053 181 87 2 0.02 DIDO1 11083 mdanderson.org 37 20 61513425 61513425 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_033081 exon16 c.G3883A p.A1295T AGGCTGCCGCTGC 51 3 0.06 52 0 0 10 0 0.00 GMEB2 26205 mdanderson.org 37 20 62221508 62221508 + Silent SNP G G C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_012384 exon10 c.C1527G p.P509P AGGCCCGGGGGCA 52 3 0.06 31 0 0 19 0 0.00 PLXNB2 23654 mdanderson.org 37 22 50722032 50722032 + Missense_Mutation SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_012401 exon15 c.C2569T p.R857W CTCACCGGGTGGA 38 3 0.08 51 0 0 258 0 0.00 VGLL4 9686 mdanderson.org 37 3 11600098 11600098 + Missense_Mutation SNP T T C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001128219 exon5 c.A823G p.R275G GGCCCCTGCGAGA 18 2 0.11 16 0 0 89 0 0.00 SCAP 22937 mdanderson.org 37 3 47462212 47462212 + Silent SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_012235 exon12 c.C1395A p.A465A TGGCTTGGCTGAG 41 3 0.07 29 1 0.0344827586 107 0 0.00 MUC4 4585 bcgsc.ca 37 3 195513145 195513145 + Missense_Mutation SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . MUC4 NM_018406 exon2 c.T5306C p.V1769A GTGGATACTGAGG 728 55 0.08 646 11 0.0170278638 1505 2 0 0.00 SPON2 10417 mdanderson.org 37 4 1164277 1164277 + Missense_Mutation SNP C C T rs2279279 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001199021 exon7 c.G724A p.V242M GCCGCACCAGTGT 61 2 0.03 64 0 0 31 0 0.00 CSN2 1447 broad.mit.edu 37 4 70823294 70823294 + Missense_Mutation SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . CSN2 NM_001891 exon5 c.T373C p.F125L CAAAAAAGGGTAT 111 4 0.04 153 0 0 30 0 0 HPSE 10855 mdanderson.org 37 4 84234379 84234379 + Silent SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001098540 exon4 c.C561A p.G187G ATTTAGGCCAAAG 92 5 0.05 151 0 0 1 0 0.00 DSPP 1834 bcgsc.ca 37 4 88536686 88536686 + Missense_Mutation SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . DSPP NM_014208 exon5 c.A2872G p.N958D AGCAGCAATAGCA 63 6 0.10 112 1 0.0089285714 174 0 0 SGTB 54557 mdanderson.org 37 5 64966159 64966159 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_019072 exon11 c.C829T p.Q277X GTTGCTGTATCTG 41 3 0.07 65 0 0 4 0 0.00 GCNT4 51301 mdanderson.org 37 5 74324717 74324717 + Silent SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_016591 exon1 c.T1146C p.C382C TCCAGTACAACTG 47 3 0.06 57 0 0 2 0 0.00 HLA-G 3135 ucsc.edu 37 6 29797394 29797394 + Silent SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . HLA-G NM_002127 exon5 c.G819A p.V273V GGTGGTGCCTTCT 106 1 0.01 111 0 0 90 181 66 0.36 SUPT3H 8464 broad.mit.edu 37 6 45073703 45073703 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . SUPT3H NM_181356 exon5 c.G175A p.A59T AAACTGCTGTTTC 101 4 0.04 94 0 0 75 12 0 0.00 SYNJ2 8871 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 158517208 158517208 + Missense_Mutation SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . SYNJ2 NM_003898 exon27 c.G4303A p.D1435N AGCTCAGACCCTT 181 17 0.09 159 1 0.0062893082 111 29 2 0.07 SDK1 221935 mdanderson.org 37 7 4188935 4188935 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f SDK1,NS,carcinoma,0,1 SDK1 NM_152744 exon30 c.G4465T p.E1489X CAGGCAGAAGTGA 81 5 0.06 50 0 0 0 1 11 0 0.00 TARP 0 broad.mit.edu 37 7 38304986 38304986 + RNA SNP C C T rs17418300 by1000genomes TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001003806 exon2 c.G109A p.V37I GATCAACTCCGTT 136 5 0.04 100 2 0.02 0 0 TAF6 6878 mdanderson.org 37 7 99705016 99705016 + Silent SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_001190415 exon15 c.T1998C p.P666P CGGGGGAGGAACT 54 3 0.06 42 1 0.0238095238 269 1 0.00 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 3216723 3216723 + Silent SNP G G A novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_033225 exon21 c.C3255T p.C1085C ACCCAGGCAGGTA 102 30 0.29 94 0 0 1 0 0.00 CPSF1 29894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145627045 145627045 + Missense_Mutation SNP C C T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_013291 exon3 c.G167A p.S56N CCTGTGCTCCTGT 177 40 0.23 103 0 0 92 20 0.22 PTPRD 5789 mdanderson.org 37 9 8376061 8376061 + Silent SNP T T C novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_002839 exon39 c.A4536G p.R1512R GAATTGTCTCACT 41 3 0.07 76 0 0 0 0 SPTAN1 6709 mdanderson.org 37 9 131343287 131343287 + Missense_Mutation SNP G G T novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . NM_003127 exon11 c.G1410T p.Q470H CCTGCAGCTCTTC 51 3 0.06 64 0 0 60 0 0.00 UPRT 139596 broad.mit.edu 37 X 74519638 74519638 + Missense_Mutation SNP A A G novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . UPRT NM_145052 exon5 c.A631G p.S211G ATTCAGAGTGATG 85 3 0.04 74 0 0 46 9 0 0.00 . 0 broad.mit.edu 37 Y 14499256 14499256 + RNA DEL T T - novel TCGA-2G-AAGV-01A-11D-A42Y-10 TCGA-2G-AAGV-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c5576078-ba13-4487-8b25-2dfdb8370330 b92907a1-a37f-4fd8-990c-e8c356ea936f . . . . . . ATTTTCTTTTTTT 13 4 0.31 22 0 0 0 0