Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TAS1R3 83756 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 1267021 1267023 + In_Frame_Del DEL CTC CTC - novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 CTC CTC Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . TAS1R3 NM_152228 exon2 c.194_196del p.65_66del CAGGTTCTCCTCA 28 12 0.43 54 0 0 39 3 0 0.00 GABRD 2563 broad.mit.edu 37 1 1961133 1961133 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . GABRD NM_000815 exon8 c.G991T p.A331S GCCTTTGCTCATT 105 3 0.03 195 0 0 49 6 0 0.00 AGTRAP 57085 mdanderson.org 37 1 11807591 11807591 + Missense_Mutation SNP G G T rs201093684 by1000genomes TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_001040196 exon4 c.G254T p.R85L ATCGACGCCATAA 40 3 0.08 91 0 0 0 244 0 0.00 CROCCP3 0 broad.mit.edu 37 1 16809784 16809784 + RNA SNP T T G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . GCACCTTCTCAGG 5 3 0.60 16 0 0 0 0 LDLRAD2 401944 mdanderson.org 37 1 22142477 22142477 + Missense_Mutation SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_001013693 exon3 c.A553G p.I185V AGGTGCATCCCCT 43 3 0.07 82 0 0 1 0 0.00 OVGP1 5016 bcgsc.ca 37 1 111957533 111957533 + Silent SNP C C T rs112145355 bycluster TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . OVGP1 NM_002557 exon11 c.G1590A p.Q530Q CACAGACTGATGA 101 3 0.03 156 0 0 177 11 0 0.00 F5 2153 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 169483622 169483622 + Missense_Mutation SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be F5,colon,carcinoma,+1,1 F5 NM_000130 exon25 c.C6604T p.R2202C TGACACGGATAAA 124 7 0.06 124 0 0 1 1 0 0 GPR52 9293 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 174417851 174417851 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . GPR52 NM_005684 exon1 c.C602T p.A201V CCAGTGCCTATTT 136 65 0.48 139 1 0.0071942446 40 0 0 NEBL 10529 mdanderson.org 37 10 21141490 21141490 + Missense_Mutation SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_006393 exon10 c.C992T p.A331V AGGACGGCATTGC 30 3 0.10 42 0 0 0 0 . 0 bcgsc.ca 37 10 37627062 37627062 + RNA SNP T T G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . TGGGGCTTTTTTC 84 39 0.46 187 0 0 0 0 GDF2 2658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 48413904 48413904 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_016204 exon2 c.G964A p.G322R CAGCCCCGGCGCT 62 16 0.26 91 0 0 0 0 MUC6 4588 bcgsc.ca 37 11 1016870 1016871 + Missense_Mutation DNP GG GG AT novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 GG GG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . MUC6 NM_005961 exon31 c.C5930A p.P1977H AGAGAAGGGACTG 280 13 0.05 610 3 0.0049180328 408 1 0 0.00 MUC6 4588 bcgsc.ca 37 11 1017363 1017363 + Missense_Mutation SNP C C G rs199783663 TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . MUC6 NM_005961 exon31 c.G5438C p.G1813A ACAGGACCTGTGG 231 11 0.05 462 8 0.0173160173 408 1 1 1.00 MUC2 4583 mdanderson.org 37 11 1093050 1093050 + Silent SNP C C A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_002457 exon30 c.C4869A p.G1623G CACTGGCACACAG 33 4 0.12 33 1 0.0303030303 0 0 SLC15A3 51296 mdanderson.org 37 11 60718892 60718892 + Silent SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_016582 exon1 c.G132A p.L44L GCGCTCCAGCATC 46 3 0.07 88 0 0 2 0 0.00 IGHMBP2 3508 mdanderson.org 37 11 68704480 68704480 + Silent SNP G G T rs2228207 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_002180 exon13 c.G2532T p.A844A GAGCGCGCAGGGG 20 2 0.10 27 0 0 13 0 0.00 FZD4 8322 mdanderson.org 37 11 86662968 86662968 + Missense_Mutation SNP C C T rs148970041 TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_012193 exon2 c.G830A p.R277Q CTTTCCCGGCCTA 39 3 0.08 81 0 0 0 2 0 0.00 FOXJ2 55810 broad.mit.edu 37 12 8196601 8196601 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . FOXJ2 NM_018416 exon5 c.G532T p.A178S GGCGTTGCAGGGA 317 5 0.02 109 0 0 43 6 0 0.00 KIAA1551 55196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 32138197 32138197 + Silent SNP T T C novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_018169 exon4 c.T4308C p.S1436S AGCGAGTTCATCT 372 154 0.41 149 0 0 445 213 0.48 KIF21A 55605 broad.mit.edu 37 12 39735383 39735383 + Silent SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be KIF21A,NS,carcinoma,0,2 KIF21A NM_001173464 exon14 c.G1845A p.E615E CTCCTCCTCTTCT 334 5 0.01 138 1 0.0072463768 238 2 23 0 0.00 DDX23 9416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49231066 49231066 + Silent SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_004818 exon8 c.C864T p.P288P TCACAGGGGGTTG 143 44 0.31 148 0 0 174 60 0.34 TROAP 10024 ucsc.edu 37 12 49718012 49718012 + Missense_Mutation SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . TROAP NM_001100620 exon4 c.A412G p.R138G CTCGCCAGGTGCC 166 1 0.01 208 0 0 80 109 15 0.14 RAB5B 5869 broad.mit.edu 37 12 56383797 56383797 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . RAB5B NM_002868 exon3 c.C230T p.A77V ACACAGCTGGGCA 429 7 0.02 285 0 0 22 49 0 0.00 CCDC64 92558 broad.mit.edu;bcgsc.ca 37 12 120427911 120427911 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . CCDC64 NM_207311 exon1 c.C239T p.P80L CCGAGCCTGGGTC 74 23 0.31 60 1 0.0166666667 40 2 2 1.00 PARP4 143 mdanderson.org 37 13 25052312 25052312 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_006437 exon13 c.C1551A p.D517E GGAAAAGTCCTTC 49 3 0.06 84 0 0 8 0 0.00 MCF2L 23263 mdanderson.org 37 13 113718631 113718631 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_001112732 exon6 c.G503T p.S168I TGCTGAGCTCCGT 52 3 0.06 74 0 0 5 0 0.00 NFATC4 4776 broad.mit.edu 37 14 24841659 24841659 + Silent SNP A A C novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . NFATC4 NM_001198967 exon4 c.A1398C p.L466L TGCCCTACCCCCA 46 10 0.22 59 8 0.1355932203 115 1 1 1.00 ATXN3 4287 hgsc.bcm.edu 37 14 92537354 92537355 + In_Frame_Ins INS - - CTGCTGCTGCTGCTGCTGCTG rs76478261 alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be ATXN3,NS,carcinoma,0,7 ATXN3 NM_004993 exon10 c.916_917insCAGCAGCAGCAGCAGCAGCAG p.G306delinsQQQQQQQG GGTCCCCCTGCTG 60 0 0.00 83 0 0 46 53 0 0.00 LOC645752 0 broad.mit.edu 37 15 78217296 78217296 + RNA SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . GTGGCAACCACCA 135 8 0.06 117 3 0.0256410256 0 0 TICRR 90381 broad.mit.edu 37 15 90168410 90168410 + Silent SNP A A C novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be C15orf42,NS,carcinoma,0,1 . NM_152259 exon20 c.A4869C p.S1623S TGTGTCACCCCCC 67 11 0.16 56 9 0.1607142857 1 49 8 0.16 TBL3 10607 mdanderson.org 37 16 2024674 2024674 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_006453 exon5 c.G373T p.A125S CTGCTAGCCACAG 33 3 0.09 49 0 0 72 0 0.00 FAM86A 196483 bcgsc.ca 37 16 5141852 5141852 + Silent SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . FAM86A NM_201400 exon4 c.G285A p.A95A CGCCAGCGCTTCA 236 23 0.10 357 5 0.0140056022 32 23 0 0.00 SMPD3 55512 broad.mit.edu 37 16 68397765 68397767 + In_Frame_Del DEL GTC GTC - novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 GTC GTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . SMPD3 NM_018667 exon6 c.1558_1560del p.520_520del CAGCTTGTCGTCT 27 8 0.30 30 0 0 52 0 0 . 0 broad.mit.edu 37 17 20322623 20322624 + RNA INS - - T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . CAGCTGATTTTTT 35 7 0.20 21 0 0 0 0 KRT18P55 0 broad.mit.edu 37 17 26633346 26633347 + RNA INS - - TG rs199753268 by1000genomes TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . TTGTTGTTTTTTT 16 6 0.38 8 0 0 0 0 SLFN5 162394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33591734 33591734 + Silent SNP A A T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_144975 exon4 c.A1671T p.T557T ACTGACAAATAAA 126 17 0.13 135 0 0 1 0 0.00 KRTAP4-6 81871 hgsc.bcm.edu 37 17 39296317 39296317 + Silent SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be KRTAP4-6,NS,carcinoma,-1,1 KRTAP4-6 NM_030976 exon1 c.T423C p.R141R GCTGGGACGGCAG 67 5 0.07 68 0 0 -1 1 0 0 KCNH4 23415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40323897 40323897 + Silent SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be KCNH4,bladder,carcinoma,0,1 KCNH4 NM_012285 exon7 c.C1104T p.V368V CGCAAAGACCGAC 86 26 0.30 111 0 0 0 1 0 0 GNAL 2774 broad.mit.edu 37 18 11824997 11824997 + Silent SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . GNAL NM_182978 exon5 c.G705T p.L235L CCAGCTGATTGAC 64 3 0.05 130 0 0 59 20 0 0.00 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 31324017 31324017 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_030632 exon12 c.C4205T p.A1402V CTGTAGCGGTCAC 72 32 0.44 149 0 0 0 0 TSHZ1 10194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 72999575 72999575 + Missense_Mutation SNP C C T rs370322226 TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be TSHZ1,NS,lymphoid_neoplasm,0,1 TSHZ1 NM_005786 exon2 c.C2078T p.P693L ACTCACCGGAGCC 32 8 0.25 46 0 0 0 1 2 0 0.00 SAFB2 9667 mdanderson.org 37 19 5593989 5593989 + Missense_Mutation SNP C C A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_014649 exon15 c.G2120T p.R707L CGCTCGCGGTGGA 10 2 0.20 16 0 0 67 0 0.00 NOTCH3 4854 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15299844 15299844 + Missense_Mutation SNP G G C novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . NOTCH3 NM_000435 exon8 c.C1334G p.T445R AGGCACGTGGCCT 86 16 0.19 103 1 0.0097087379 340 10 1 0.10 ZNF536 9745 mdanderson.org 37 19 30934497 30934497 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_014717 exon2 c.G28T p.V10L CTTGGAGTGTCTT 31 3 0.10 75 0 0 0 0 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21239410 21239410 + Missense_Mutation SNP C C G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_000384 exon21 c.G3233C p.R1078T TTAACTCTGAGGA 162 23 0.14 235 0 0 0 0 ZNF513 130557 mdanderson.org 37 2 27601026 27601026 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_144631 exon4 c.C1012A p.R338S TGCAGCGCCCACA 43 3 0.07 32 0 0 88 0 0.00 SPDYA 245711 broad.mit.edu 37 2 29063247 29063247 + Silent SNP G G T rs142885879 alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . SPDYA NM_001142634 exon6 c.G762T p.G254G AGCAGGGGTGACA 268 5 0.02 289 0 0 41 0 0 CAPN13 92291 ucsc.edu;bcgsc.ca 37 2 30955408 30955408 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . CAPN13 NM_144575 exon20 c.G1823A p.S608N TCACGGCTGATGA 39 4 0.10 33 0 0 70 0 0 QPCT 25797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 37599594 37599594 + Missense_Mutation SNP C C A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_012413 exon6 c.C919A p.H307N GATGACCATATTC 125 18 0.14 136 0 0 42 7 0.17 ARID5A 10865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 97217882 97217882 + Silent SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_212481 exon7 c.G1617T p.L539L CTTCCTGGCCACC 77 16 0.21 69 0 0 24 3 0.13 ANKRD30BL 554226 broad.mit.edu 37 2 132919171 132919171 + Silent SNP A A G rs199695856 bycluster TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . ANKRD30BL . . . . ATCCCCATGGTGA 161 8 0.05 187 1 0.0053475936 36 0 0 ANKRD30BL 554226 broad.mit.edu 37 2 132919192 132919192 + Silent SNP G G A rs111295191 bycluster TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . ANKRD30BL . . . . AGAGTCGTTGTTG 182 6 0.03 211 0 0 36 0 0 ZEB2 9839 mdanderson.org 37 2 145147409 145147409 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_014795 exon10 c.C3254A p.A1085E TCCTCCGCCTCCC 45 3 0.07 52 0 0 0 0 RBCK1 10616 ucsc.edu;bcgsc.ca 37 20 409639 409639 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be RBCK1,NS,carcinoma,0,1 RBCK1 NM_031229 exon11 c.G1353T p.Q451H GTGCCAGATCGTG 38 4 0.11 73 0 0 38 1 49 0 0.00 TRMT6 51605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 5923280 5923280 + Missense_Mutation SNP T T C novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_015939 exon7 c.A820G p.M274V ATAACATCTTGGC 116 74 0.64 208 0 0 57 28 0.49 TANGO2 128989 bcgsc.ca 37 22 20030887 20030887 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . TANGO2 NM_152906 exon3 c.G66T p.L22F CATCTTGGCAGCC 61 5 0.08 96 0 0 4 10 0 0.00 SCAP 22937 hgsc.bcm.edu 37 3 47459292 47459292 + Silent SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be SCAP,caecum,carcinoma,-2,1 SCAP NM_012235 exon17 c.G2472A p.V824V GCTGCCCACGCCA 101 21 0.21 141 1 0.0070921986 -2 1 16 2 0.13 EPHA6 285220 hgsc.bcm.edu 37 3 97194255 97194255 + Missense_Mutation SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be EPHA6_ENST00000502694,extremity,malignant_melanoma,-1,2 EPHA6_ENST00000502694 NM_001080448 exon8 c.G1954A p.G652R GTTGGCGGATTCA 100 4 0.04 124 0 0 -1 2 1 0 0.00 TMEM39A 55254 broad.mit.edu 37 3 119156690 119156690 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . TMEM39A NM_018266 exon6 c.C836A p.A279E AAATCTGCTTTCA 111 4 0.04 149 0 0 36 56 0 0.00 PLXND1 23129 mdanderson.org 37 3 129325111 129325111 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_015103 exon1 c.C372A p.Y124X CTTGTTGTAGTTG 38 3 0.08 43 0 0 9 0 0.00 DOK7 285489 mdanderson.org 37 4 3494689 3494689 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_173660 exon7 c.C976T p.Q326X CCGCGGCAGCTGC 20 2 0.10 30 0 0 8 0 0.00 MSX1 4487 mdanderson.org 37 4 4861868 4861868 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_002448 exon1 c.C242T p.A81V CCCTGGCGCCCTC 18 2 0.11 28 0 0 1 0 0.00 EPHA5 2044 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 66201775 66201775 + Missense_Mutation SNP C C A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_004439 exon16 c.G2727T p.Q909H CATTAACTGATAG 270 18 0.07 207 0 0 0 0 PALLD 23022 broad.mit.edu;ucsc.edu 37 4 169589444 169589444 + Missense_Mutation SNP G G C rs148155834 alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be PALLD,NS,carcinoma,0,1 PALLD NM_001166108 exon3 c.G1012C p.D338H GAGGACGACACAG 75 18 0.24 120 3 0.025 179 1 0 0 DAB2 1601 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 39377194 39377194 + Silent SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . DAB2 NM_001343 exon12 c.T1695C p.T565T AGGGGGAGTTGAG 120 5 0.04 214 1 0.0046728972 124 8 0 0.00 LMNB1 4001 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 126141339 126141339 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . LMNB1 NM_005573 exon3 c.G593T p.C198F ATCGTTGTCAGAG 99 5 0.05 112 0 0 49 280 0 0.00 SRA1 10011 ucsc.edu 37 5 139937054 139937054 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . SRA1 NM_001035235 exon1 c.G20A p.G7D GCTTGGCCAGCGG 40 4 0.10 33 0 0 24 5 0 0.00 PCDHA3 56145 mdanderson.org 37 5 140182666 140182666 + Silent SNP G G T rs368819593 alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be PCDHA3_ENST00000522353,colon,carcinoma,+1,2 PCDHA3_ENST00000522353 NM_018906 exon1 c.G1884T p.T628T GTACACGGGAGAG 57 3 0.05 60 0 0 1 2 0 0 PDGFRB 5159 mdanderson.org 37 5 149502625 149502625 + Silent SNP G G T rs146967726 alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_002609 exon15 c.C2163A p.P721P CCCAACGGGCAGA 57 3 0.05 66 0 0 7 0 0.00 SKIV2L 6499 mdanderson.org 37 6 31931719 31931719 + Silent SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_006929 exon16 c.C1677T p.A559A CCTGGCCTCCCTC 40 3 0.08 50 0 0 43 1 0.02 RUNX2 860 hgsc.bcm.edu 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be RUNX2_ENST00000352853,NS,carcinoma,0,2 RUNX2_ENST00000352853 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG 29 2 0.07 28 0 0 0 2 1 0 0.00 SLC25A27 9481 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 46623642 46623642 + Silent SNP C C A rs200951505 bycluster;alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . SLC25A27 NM_001204051 exon2 c.C169A p.R57R CTTGCTCGGTTGG 113 24 0.21 121 1 0.0082644628 22 1 0 0.00 COL21A1 81578 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 56035583 56035583 + Missense_Mutation SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_030820 exon5 c.T890C p.L297S CTCCATAAATCCC 261 24 0.09 230 0 0 2 0 0.00 WDR27 253769 mdanderson.org 37 6 170043874 170043874 + Missense_Mutation SNP G G T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_182552 exon17 c.C1666A p.Q556K GCCACTGCCCATC 40 3 0.08 61 0 0 3 0 0.00 TNRC18 84629 broad.mit.edu 37 7 5410781 5410781 + Silent SNP C C T rs374062653 TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . TNRC18 NM_001080495 exon11 c.G3444A p.P1148P TTCCTCCGGGCCC 116 4 0.03 82 0 0 311 119 0 0.00 DBNL 28988 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44098556 44098556 + Missense_Mutation SNP C C A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_001122956 exon9 c.C836A p.T279N TGTCCACCACCTC 101 20 0.20 96 0 0 141 41 0.29 H2AFV 94239 mdanderson.org 37 7 44874113 44874113 + Missense_Mutation SNP T T C rs1802437 bycluster;by2hit2allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_012412 exon5 c.A374G p.Q125R GTTTTCTGCTGTC 150 10 0.07 133 1 0.007518797 0.001 1146 3 0.00 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 151874328 151874328 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . MLL3 NM_170606 exon38 c.8211delT p.N2737fs TCCAAATTATCTA 59 20 0.34 97 0 0 1564 1 0 0.00 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 3855559 3855559 + Nonsense_Mutation SNP G G C rs372509834 alternate_allele TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_033225 exon5 c.C684G p.Y228X GTTCTCGTACTCT 117 13 0.11 144 0 0 0 0 SULF1 23213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 70533339 70533339 + Missense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_001128205 exon14 c.C1447T p.L483F GACCTGCTCACAG 164 49 0.30 92 0 0 0 0 UBAP2 55833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 33953311 33953311 + Missense_Mutation SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_018449 exon12 c.C1028T p.A343V TTGACGGCAGTGG 131 21 0.16 164 0 0 48 12 0.25 DOLPP1 57171 ucsc.edu 37 9 131851281 131851281 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . DOLPP1 NM_020438 exon8 c.C712T p.Q238X AAACTGCAGTGAC 37 4 0.11 47 0 0 17 76 0 0.00 C9orf139 401563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139927646 139927646 + Missense_Mutation SNP C C A rs368472017 TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . NM_207511 exon2 c.C131A p.A44E CCCAGGCGTGGCC 57 17 0.30 103 0 0 0 0 ND6 4541 broad.mit.edu;bcgsc.ca 37 MT 14612 14612 + Missense_Mutation SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . ENST00000361681 exon1 c.C62T p.S21F GGCTTAGAAGAAA 155 114 0.74 117 1 0.0085470085 0 0 . 402408 bcgsc.ca 37 X 65718100 65718100 + RNA SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . AAGAAGGGAGCCA 21 6 0.29 17 0 0 0 0 . 100129013 bcgsc.ca 37 X 67992110 67992110 + RNA SNP A A G novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . . . . . . CTCTCTATAAGAA 83 41 0.49 84 0 0 0 0 FLNA 0 broad.mit.edu;mdanderson.org 37 X 153589789 153589789 + Missense_Mutation SNP G G A novel TCGA-2G-AAGW-01A-11D-A42Y-10 TCGA-2G-AAGW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fc9dbc-9462-4d14-ab52-51016b37351f ec835e9e-7490-4325-8e2d-0823a9bfd9be . FLNA NM_001456 exon21 c.C3094T p.R1032C GGAAGCGCACCAC 80 4 0.05 66 0 0 373 111 0 0.00