Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PLEKHN1	84069	broad.mit.edu;mdanderson.org	37	1	909421	909421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	PLEKHN1	NM_032129	exon14	c.C1643A	p.A548D	CAGACGCCCCTCA		30	5	0.17	25	0	0		49		0	0				
ASAP3	55616	hgsc.bcm.edu;mdanderson.org	37	1	23760787	23760787	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_017707	exon19	c.C1911A	p.C637X	CTTGAGGCAGTCG		107	5	0.05	129	0	0				332	0	0.00			
SNRNP40	9410	mdanderson.org	37	1	31744283	31744283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004814	exon6	c.G718A	p.G240S	TCAGGCCAGTCAC		40	3	0.08	49	0	0				150	0	0.00			
HIVEP3	59269	broad.mit.edu	37	1	42047076	42047076	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	HIVEP3	NM_024503	exon4	c.A3393C	p.T1131T	CAGGGGTGTCTGG		64	11	0.17	87	17	0.1954022989		235		1	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145116193	145116193	+	RNA	DEL	G	G	-	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	CTGGCTGGGGCAT		6	2	0.33	4	0	0				69	0	0.00			
SELP	6403	bcgsc.ca	37	1	169581527	169581527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	SELP	NM_003005	exon6	c.G889A	p.A297T	CTAATGCAAATCC		96	0	0.00	131	0	0		132		1	0	0.00			
TOR1AIP2	163590	bcgsc.ca	37	1	179820097	179820097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	TOR1AIP2	NM_001199260	exon5	c.G436A	p.G146R	CAGTTCCGTCACT		137	0	0.00	152	0	0		38		5	0	0.00			
LINC00862	0	broad.mit.edu;mdanderson.org	37	1	200337836	200337836	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	TCTCTAGCAGACA		87	4	0.05	82	0	0				0	0				
KISS1	3814	mdanderson.org	37	1	204159627	204159627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002256	exon3	c.C402A	p.S134R	CCCAGCGCTTCTG		50	3	0.06	53	0	0				2	0	0.00			
AVPR1B	553	bcgsc.ca	37	1	206224555	206224555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	AVPR1B	NM_000707	exon1	c.G115A	p.G39R	GAGATCGGAGTCC		100	0	0.00	157	0	0		47		0	0				
PIGR	5284	bcgsc.ca	37	1	207110937	207110937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	PIGR	NM_002644	exon4	c.T548G	p.V183G	GGATTTACATAAC		118	0	0.00	132	0	0		98		0	0				
OBSCN	84033	mdanderson.org	37	1	228528833	228528833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001271223	exon84	c.G20606A	p.R6869H	GGGCCCGCATGCC		20	2	0.10	31	0	0				1	0	0.00			
DIP2C	22982	mdanderson.org	37	10	415572	415572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_014974	exon18	c.C1993A	p.P665T	CCGTGGGCCTGTA		67	6	0.09	65	0	0				21	0	0.00			
VWA2	340706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	116044682	116044682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001272046	exon10	c.G950A	p.G317D	TGGACGGCTACCA		40	18	0.45	59	0	0				2	2	1.00			
C11orf35	256329	mdanderson.org	37	11	557478	557478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_173573	exon7	c.C634A	p.L212M	CCTCCAGCCGAAA		75	4	0.05	116	0	0				3	0	0.00			
MUC5B	727897	mdanderson.org	37	11	1272873	1272873	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002458	exon31	c.G14763T	p.V4921V	CACTGTGTCCTCC		43	3	0.07	84	0	0				0	0				
OR52L1	338751	mdanderson.org	37	11	6007839	6007839	+	Missense_Mutation	SNP	G	G	T	rs373752876	alternate_allele	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001005173	exon1	c.C322A	p.H108N	TCTCGTGGGCATG		48	3	0.06	109	0	0				0	0				
RTN4RL2	349667	mdanderson.org	37	11	57243916	57243916	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_178570	exon3	c.C795A	p.C265X	GGCGTGCGACTGC		13	3	0.23	20	0	0				2	0	0.00			
OR10V1	390201	mdanderson.org	37	11	59480841	59480841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001005324	exon1	c.C478A	p.L160I	TGGTGAGTGGCAG		22	2	0.09	49	0	0				0	0				
MS4A15	219995	hgsc.bcm.edu;mdanderson.org	37	11	60535051	60535051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	MS4A15_ENST00000405633,caecum,carcinoma,0,1	MS4A15_ENST00000405633	NM_001098835	exon3	c.G271T	p.V91L	GGCAGCGTGCTGC		51	3	0.06	104	0	0		0	1	1	0	0.00			
CCDC87	55231	mdanderson.org	37	11	66359164	66359164	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_018219	exon1	c.C1323A	p.V441V	CGCCTGGACCACG		43	3	0.07	93	0	0				8	0	0.00			
KRTAP5-8	57830	hgsc.bcm.edu;ucsc.edu	37	11	71249545	71249545	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	KRTAP5-8,NS,carcinoma,0,1	KRTAP5-8	NM_021046	exon1	c.C444T	p.C148C	CAGCTGCTGTAAG		38	7	0.18	54	0	0		0	1	0	0				
CCDC81	60494	broad.mit.edu;mdanderson.org	37	11	86119254	86119254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	CCDC81	NM_001156474	exon9	c.A1055G	p.E352G	AAGATGAGAGACT		80	4	0.05	108	0	0		89		4	0	0.00			
LOC643923	0	mdanderson.org	37	11	107463073	107463073	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	CAGTGGGCCGTAG		39	3	0.08	136	0	0				0	0				
NPAT	4863	mdanderson.org	37	11	108032512	108032512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002519	exon17	c.C3301A	p.P1101T	CATTGGGTGAGTC		39	3	0.08	88	0	0				24	0	0.00			
MLL	4297	mdanderson.org	37	11	118375220	118375220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001197104	exon27	c.G8613T	p.E2871D	CCCAGAGTCATCT		33	3	0.09	101	0	0				7	0	0.00			
NCAPD3	23310	mdanderson.org	37	11	134047261	134047261	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	NCAPD3,colon,carcinoma,-1,1	NCAPD3	NM_015261	exon23	c.C2874A	p.R958R	GTTGTTGCGGACA		31	3	0.10	81	1	0.012345679		-1	1	31	1	0.03			
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	46622952	46622952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_030674	exon5	c.G298A	p.G100R	GGATTCCAGTGTT		108	51	0.47	144	0	0				1	0	0.00			
HNRNPA1	3178	bcgsc.ca	37	12	54677642	54677642	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	HNRNPA1	NM_031157	exon9	c.C954T	p.Y318Y	GAATTACAACAAT		50	0	0.00	56	0	0		72		3860	0	0.00			
MPHOSPH8	54737	mdanderson.org	37	13	20242564	20242564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	MPHOSPH8,NS,carcinoma,+1,1	MPHOSPH8	NM_017520	exon11	c.G2222T	p.R741L	AAGCTCGCCTTGC		51	3	0.06	112	0	0		1	1	85	0	0.00			
FRY	10129	mdanderson.org	37	13	32869364	32869364	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_023037	exon61	c.G8809T	p.G2937X	ATCTTTGGAAGCA		38	3	0.08	62	0	0				16	0	0.00			
RPL10L	140801	broad.mit.edu	37	14	47120796	47120796	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	RPL10L	NM_080746	exon1	c.C144A	p.L48L	GCCACCGAGTGGG		125	4	0.03	134	0	0		64		30	0	0.00			
SLC8A3	6547	bcgsc.ca	37	14	70633871	70633871	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	SLC8A3	NM_183002	exon2	c.A1269G	p.G423G	CATGTCTCCCCCT		93	0	0.00	103	0	0		234		0	0				
EIF3J	8669	broad.mit.edu	37	15	44829415	44829415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	EIF3J	NM_003758	exon1	c.C23G	p.A8G	CGGCGGCGGGGGA		366	9	0.02	381	4	0.0104986877		29		76	1	0.01			
NR2E3	10002	mdanderson.org	37	15	72105863	72105863	+	Silent	SNP	G	G	A	rs1805024	bycluster	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_014249	exon6	c.G882A	p.T294T	GCTCACGCTGGCC		50	4	0.08	68	0	0				0	0				
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GTGGCAACCACCA		144	11	0.08	124	2	0.0161290323				0	0				
ADAMTS7	11173	ucsc.edu	37	15	79069120	79069120	+	Missense_Mutation	SNP	C	C	T	rs146326084		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	ADAMTS7	NM_014272	exon10	c.G1531A	p.V511M	CGTCCACAGCTGC		49	8	0.16	57	3	0.0526315789		142		2	0	0.00			
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	86118561	86118561	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_006738	exon6	c.861+1G>T	.	CTAATGGTAAGTC		160	29	0.18	116	0	0				1	0	0.00			
NME4	4833	mdanderson.org	37	16	450302	450302	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_005009	exon5	c.G524A	p.W175X	TGAGCTGGGCAGA		15	2	0.13	23	0	0				191	0	0.00			
ZNF174	7727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	3458752	3458752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_003450	exon3	c.C1057A	p.P353T	GAGAGACCCTACA		111	25	0.23	142	0	0				22	6	0.27			
SRCAP	10847	broad.mit.edu;mdanderson.org	37	16	30732548	30732548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	SRCAP	NM_006662	exon21	c.C3292T	p.R1098W	ACCTCACGGCCTC		86	4	0.05	117	1	0.0085470085		298		71	0	0.00			
HSD3B7	80270	mdanderson.org	37	16	30999089	30999089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_025193	exon7	c.G695T	p.G232V	CGGCAGGCAATGT		33	3	0.09	36	0	0				13	0	0.00			
PARD6A	50855	mdanderson.org	37	16	67695453	67695453	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_016948	exon2	c.G159T	p.P53P	GATCCCGGGCCTG		30	3	0.10	48	0	0				5	0	0.00			
HYDIN	54768	bcgsc.ca	37	16	70913326	70913326	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	HYDIN	NM_001270974	exon62	c.G10431C	p.V3477V	AACCGTCACTCGA		69	0	0.00	81	0	0		788		0	0				
NTN1	9423	bcgsc.ca	37	17	9086578	9086578	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	NTN1	.	.	.	.	CCAGCCCAACACC		163	0	0.00	196	2	0.0102040816		31		0	0				
KRT35	3886	mdanderson.org	37	17	39637213	39637213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002280	exon1	c.C137A	p.A46D	CTTCTGGCCACAG		55	3	0.05	52	0	0				0	0				
ASB16	92591	mdanderson.org	37	17	42249642	42249642	+	Missense_Mutation	SNP	C	C	T	rs146107168	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_080863	exon2	c.C530T	p.T177M	AGGGCACGACTCC		49	3	0.06	62	0	0				1	0	0.00			
BZRAP1	9256	bcgsc.ca	37	17	56387403	56387403	+	Silent	SNP	T	T	C	rs146816897		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	BZRAP1	NM_004758	exon21	c.A3816G	p.E1272E	CTCCTCTTCCTCC		39	0	0.00	61	0	0		287		2	0	0.00			
SDK2	54549	mdanderson.org	37	17	71354245	71354245	+	Missense_Mutation	SNP	G	G	T	rs371296779	alternate_allele	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001144952	exon40	c.C5566A	p.R1856S	CGTAGCGGGTGAT		39	3	0.08	62	0	0				7	0	0.00			
SDK2	54549	ucsc.edu	37	17	71354282	71354282	+	Missense_Mutation	SNP	G	G	T	rs199537367	bycluster;alternate_allele	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	SDK2	NM_001144952	exon40	c.C5529A	p.H1843Q	GGACCAGTGAATG		43	4	0.09	71	0	0		219		13	0	0.00			
CXXC1	30827	mdanderson.org	37	18	47810404	47810404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001101654	exon10	c.C1285A	p.H429N	TGCCGTGCTCTTC		37	3	0.08	63	0	0				68	0	0.00			
FBXL12	54850	broad.mit.edu	37	19	9929381	9929381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	FBXL12	.	.	.	.	TGCCCTTCCCCCC		124	8	0.06	119	1	0.0084033613		17		5	0	0.00			
S1PR5	53637	mdanderson.org	37	19	10625621	10625621	+	Missense_Mutation	SNP	C	C	T	rs377292940		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001166215	exon2	c.G67A	p.G23S	GCTTGCCGGTGTA		22	2	0.09	25	0	0				0	0				
NFIX	4784	broad.mit.edu	37	19	13135824	13135824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	NFIX	.	.	.	.	CGGCTTGCCGCCT		70	15	0.21	70	10	0.1428571429		61		0	0				
ARHGEF1	9138	bcgsc.ca	37	19	42406941	42406941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	ARHGEF1	NM_199002	exon18	c.A1676G	p.E559G	AAGCTGAGAGCCG		44	0	0.00	43	0	0		95		96	0	0.00			
OPA3	80207	mdanderson.org	37	19	46056931	46056931	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_025136	exon2	c.C381A	p.G127G	CAGGTGGCCCACC		18	2	0.11	23	0	0				17	0	0.00			
PRPF31	26121	bcgsc.ca	37	19	54629912	54629912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	PRPF31	NM_015629	exon9	c.C865T	p.R289W	CTGCGGCGGAAAG		86	0	0.00	84	0	0		48		191	0	0.00			
ZNF135	7694	hgsc.bcm.edu	37	19	58578756	58578756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	ZNF135,caecum,carcinoma,0,1	ZNF135	NM_007134	exon4	c.G976T	p.E326X	TGCAGCGAATGTG		72	3	0.04	87	0	0		0	1	14	0	0.00			
ASAP2	8853	mdanderson.org	37	2	9467997	9467997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001135191	exon7	c.G643T	p.D215Y	GGAGTAGATTTAC		49	3	0.06	78	0	0				22	0	0.00			
SPTBN1	0	broad.mit.edu;mdanderson.org	37	2	54753700	54753700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	SPTBN1	NM_003128	exon2	c.G145T	p.A49S	GCTCTGGCAGGTG		44	3	0.07	53	0	0		378		109	0	0.00			
MAT2A	4144	bcgsc.ca	37	2	85769043	85769043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	MAT2A	NM_005911	exon5	c.A497G	p.E166G	TGGCAGAACTACG		107	0	0.00	88	0	0		23		270	0	0.00			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	ATTTTCCATTTTT		174	23	0.13	153	6	0.0392156863				0	0				
LOC100131320	0	broad.mit.edu	37	2	130726529	130726529	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	AAGTGCAAAAAAA		9	3	0.33	10	0	0				1	0	0.00			
COL6A3	1293	mdanderson.org	37	2	238253730	238253730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004369	exon34	c.C7133A	p.A2378D	ATGAGGGCACATT		94	5	0.05	164	1	0.006097561				8	0	0.00			
CENPB	1059	broad.mit.edu	37	20	3766757	3766757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	CENPB	NM_001810	exon1	c.G374A	p.R125H	CGGAAGCGGTCCA		5	2	0.40	12	0	0		24		8	0	0.00			
TMX4	56255	broad.mit.edu	37	20	8000252	8000252	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		26	11	0.42	45	21	0.4666666667		39		16	1	0.06			
PLAC4	191585	hgsc.bcm.edu	37	21	42551433	42551433	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_182832	exon1	c.C123T	p.P41P	GTGTCTGGGGTGA		104	19	0.18	118	0	0				9	0	0.00			
GAB4	128954	broad.mit.edu;mdanderson.org	37	22	17488891	17488891	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	GAB4	NM_001037814	exon1	c.C114A	p.G38G	CACGTGGCCACTT		124	6	0.05	176	1	0.0056818182		95		0	0				
BPIFC	254240	mdanderson.org	37	22	32831697	32831697	+	Silent	SNP	G	G	T	rs375648599	alternate_allele	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	BPIL2,NS,carcinoma,-2,2	BPIL2	NM_174932	exon8	c.C918A	p.T306T	CTCTTCGGTGGAG		41	3	0.07	38	0	0		-2	2	0	0				
MRPS25	64432	hgsc.bcm.edu;broad.mit.edu	37	3	15094113	15094115	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	MRPS25	NM_022497	exon4	c.356_358del	p.119_120del	CTTTTTCTCCTCC		75	21	0.28	106	0	0		14		163	0	0.00			
EOMES	8320	mdanderson.org	37	3	27763618	27763618	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_005442	exon1	c.C168A	p.S56S	ACTGCCGGAAAAC		21	3	0.14	52	0	0				2	0	0.00			
ZBTB20	26137	mdanderson.org	37	3	114070357	114070357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	ZBTB20,NS,carcinoma,+2,1	ZBTB20	NM_001164342	exon4	c.A568G	p.T190A	TGCGCGTGCACTC		41	3	0.07	58	0	0		2	1	0	0				
SDHAP2	727956	bcgsc.ca	37	3	195400814	195400815	+	Splice_Site	INS	-	-	TT	rs371598334	bycluster	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	GGTTGTCTGGTCA		74	2	0.03	45	0	0				27	0	0.00			
CLGN	1047	mdanderson.org	37	4	141311836	141311836	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004362	exon14	c.C1698A	p.I566I	TTCTATGATTTCA		107	5	0.05	186	0	0				0	0				
IRF2	3660	broad.mit.edu	37	4	185340674	185340674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	IRF2	NM_002199	exon3	c.T136G	p.W46G	CATCCCACCCATG		73	14	0.19	104	11	0.1057692308		53		12	0	0.00			
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	7743791	7743791	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_020546	exon15	c.C1882T	p.L628L	TCCGTCCTGGGCA		182	91	0.50	201	0	0				0	0				
NADKD1	133686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	36211999	36211999	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001085411	exon7	c.T807A	p.L269L	TGGCAGAAGTTGG		47	16	0.34	82	0	0				35	16	0.46			
EGFLAM	133584	mdanderson.org	37	5	38409201	38409201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_152403	exon10	c.G1344T	p.Q448H	CCTGCAGTTCAGG		50	3	0.06	92	0	0				40	0	0.00			
BTN2A3P	54718	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG		82	6	0.07	111	0	0		0	9	3	0	0.00			
ADCY1	107	mdanderson.org	37	7	45701792	45701792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_021116	exon8	c.G1584T	p.M528I	TGTCATGACCTGC		48	3	0.06	52	0	0				139	0	0.00			
CCT6P3	0	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	G	A	rs369683052	bycluster	TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	TGCTTGGGACATG		39	3	0.08	41	0	0				25	1	0.04			
ZNF3	7551	broad.mit.edu	37	7	99669374	99669374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	ZNF3	NM_032924	exon6	c.C733A	p.Q245K	GATGCTGAATAAG		222	4	0.02	133	0	0		54		112	0	0.00			
JAK2	3717	mdanderson.org	37	9	5126786	5126786	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	JAK2,NS,carcinoma,-1,1	JAK2	NM_004972	exon25	c.G3394T	p.G1132X	ATGGCTGGATGAA		50	3	0.06	68	0	0		-1	1	12	0	0.00			
PCSK5	5125	broad.mit.edu	37	9	78808163	78808163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	PCSK5	NM_006200	exon21	c.G2637T	p.E879D	GGAAGAGTCCTGG		98	4	0.04	137	0	0		329		47	0	0.00			
DFNB31	25861	mdanderson.org	37	9	117185777	117185777	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001173425	exon7	c.C1443A	p.G481G	AATGGTGCCTCTC		88	5	0.06	102	0	0				17	0	0.00			
SEC16A	9919	bcgsc.ca	37	9	139370740	139370740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	SEC16A	NM_014866	exon3	c.C1328A	p.T443K	CTCGCTGTGTCAC		106	0	0.00	137	0	0		249		79	0	0.00			
.	0	bcgsc.ca	37	X	48073977	48073977	+	RNA	SNP	C	C	A	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	.	.	.	.	ATGATTCAAAGGA		207	0	0.00	200	3	0.015				0	0				
WNK3	65267	mdanderson.org	37	X	54360093	54360093	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAGY-05A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62c0fe0a-7fa7-47b2-bf44-88ec999c398c	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001002838	exon2	c.C14A	p.S5X	TCCCCTGAATCAG		19	2	0.11	10	0	0				5	0	0.00