Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV OPRD1 4985 mdanderson.org 37 1 29189700 29189700 + Missense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_000911 exon3 c.C1024T p.P342S CCAGACCCCAGCA 23 2 0.09 33 0 0 0 0 MIR137HG 400765 hgsc.bcm.edu 37 1 98511786 98511786 + RNA SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . TGCCGCCGCCGCC 71 15 0.21 90 0 0 0 0 MIR137HG 400765 hgsc.bcm.edu 37 1 98511792 98511792 + RNA SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . CGCCGCCGCCACC 56 6 0.11 74 0 0 0 0 SRGAP2D 0 broad.mit.edu 37 1 121116750 121116750 + RNA SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001271887 exon3 c.G307T p.A103S TTGCTGGCTTTGG 208 9 0.04 186 1 0.0053763441 61 0 0.00 CELF3 11189 ucsc.edu;bcgsc.ca 37 1 151678746 151678746 + Silent SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . CELF3 NM_007185 exon10 c.G1080A p.Q360Q CTGCTGCTGTTGA 40 4 0.10 29 0 0 49 0 0 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152280480 152280480 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_002016 exon3 c.C6882A p.H2294Q TGCAGAGTGCCCA 336 82 0.24 242 0 0 0 0 OR6K6 128371 broad.mit.edu 37 1 158725536 158725536 + Missense_Mutation SNP T T C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . OR6K6 NM_001005184 exon1 c.T931C p.F311L GCTCCCTTTTTCA 208 6 0.03 212 0 0 81 0 0 PFKFB3 5209 bcgsc.ca 37 10 6271098 6271098 + Missense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . PFKFB3 . . . . GGAATGCAGCCTG 136 6 0.04 142 0 0 82 0 0 MRC1 4360 broad.mit.edu 37 10 18138582 18138582 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . MRC1 NM_002438 exon7 c.G1138T p.E380X AGAGATGAGAAAA 504 4 0.01 409 0 0 13 3 0 0.00 ENTPD7 57089 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 101451184 101451184 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ENTPD7 NM_020354 exon8 c.G752T p.R251I GACGGAGAAGGAC 103 5 0.05 99 1 0.0101010101 44 8 0 0.00 AP2A2 161 mdanderson.org 37 11 1000510 1000510 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001242837 exon15 c.G2038T p.G680C TCCTCCGGCGGCA 27 2 0.07 33 0 0 23 0 0.00 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1269803 1269803 + Missense_Mutation SNP C C G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_002458 exon31 c.C11693G p.T3898R CACCCACAACCAG 249 57 0.23 256 0 0 0 0 TNKS1BP1 85456 mdanderson.org 37 11 57076874 57076874 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_033396 exon6 c.C3311A p.P1104Q TGCCCTGGGCTAA 49 3 0.06 71 0 0 80 0 0.00 OR5B17 219965 mdanderson.org 37 11 58126036 58126036 + Silent SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a OR5B17,NS,malignant_melanoma,-1,1 OR5B17 NM_001005489 exon1 c.C507A p.S169S CACATTGGACATG 57 3 0.05 64 0 0 -1 1 0 0 PPFIA1 8500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 70224251 70224251 + Missense_Mutation SNP C C G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_177423 exon26 c.C3500G p.T1167S GGGTGACTTCTTC 66 28 0.42 103 0 0 20 1 0.05 MYO7A 4647 mdanderson.org 37 11 76919803 76919803 + Silent SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_000260 exon44 c.G6006T p.V2002V CACGGTGCCAGGG 39 3 0.08 58 0 0 8 0 0.00 RSF1 51773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 77451960 77451960 + Missense_Mutation SNP C C G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_016578 exon4 c.G394C p.D132H TGTCATCAAACTG 88 29 0.33 151 0 0 13 9 0.69 ERC1 23085 broad.mit.edu 37 12 1292505 1292505 + Missense_Mutation SNP A A G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ERC1 NM_178040 exon11 c.A2075G p.K692R TGAAAAAGGACTC 956 5 0.01 512 1 0.001953125 95 127 0 0.00 NRIP2 83714 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 2943815 2943815 + Missense_Mutation SNP T T A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_031474 exon1 c.A335T p.K112M AAGTCCTTGGAGG 150 12 0.08 64 0 0 2 0 0.00 ATN1 1822 mdanderson.org 37 12 7045879 7045879 + Missense_Mutation SNP C C A rs141514883 bycluster TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001007026 exon5 c.C1449A p.H483Q TCACCACCAGCAA 225 10 0.04 88 0 0 0 280 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25380276 25380276 + Missense_Mutation SNP T T A rs121913240 bycluster TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a KRAS_ENST00000256078,colon,carcinoma,+1,429 KRAS_ENST00000256078 NM_004985 exon3 c.A182T p.Q61L TCCTCTTGACCTG 225 26 0.12 116 0 0 1 429 104 6 0.06 FAM186A 121006 broad.mit.edu 37 12 50747102 50747102 + Silent SNP A A G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a FAM186A_ENST00000327337,NS,carcinoma,0,3 FAM186A NM_001145475 exon4 c.T3513C p.L1171L AGGGGTAAGAGGG 164 7 0.04 114 2 0.0175438596 181 3 1 0 0.00 KRT75 9119 broad.mit.edu 37 12 52827741 52827741 + Silent SNP A A G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . KRT75 NM_004693 exon1 c.T348C p.C116C AGGGGGACACACG 283 5 0.02 232 0 0 75 0 0 DCTN2 10540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57926527 57926527 + Missense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001261412 exon10 c.G847A p.A283T GCCGAGCCTCCAC 219 42 0.19 169 0 0 553 127 0.23 TSPAN19 144448 broad.mit.edu 37 12 85408282 85408282 + Missense_Mutation SNP A A T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . TSPAN19 NM_001100917 exon9 c.T731A p.I244N GCATGGATTATAT 454 8 0.02 463 0 0 23 0 0 RAN 5901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 131357394 131357394 + Missense_Mutation SNP G G A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_006325 exon3 c.G50A p.G17D TGGTTGGTGATGG 244 43 0.18 155 0 0 2292 502 0.22 MYO16 23026 mdanderson.org 37 13 109772789 109772789 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a MYO16,NS,carcinoma,0,1 MYO16 NM_001198950 exon29 c.G3510T p.Q1170H GTTGCAGAGAAAA 45 3 0.07 66 0 0 0 1 8 0 0.00 SYNDIG1L 646658 broad.mit.edu 37 14 74876236 74876236 + Missense_Mutation SNP C C A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . SYNDIG1L NM_001105579 exon2 c.G212T p.S71I AGGCAGCTGGGCC 106 5 0.05 79 0 0 24 0 0 POMT2 29954 mdanderson.org 37 14 77769282 77769282 + Silent SNP C C A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_013382 exon5 c.G552T p.T184T GCATCCCGTGTCT 51 3 0.06 52 0 0 28 0 0.00 AKAP13 11214 broad.mit.edu 37 15 86064728 86064728 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a AKAP13_ENST00000394518,NS,carcinoma,-2,2 AKAP13 NM_007200 exon3 c.G103T p.V35L TACTTGGTATTTT 391 4 0.01 289 0 0 394 2 5 0 0.00 ANPEP 290 broad.mit.edu 37 15 90328669 90328669 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ANPEP NM_001150 exon21 c.C2815A p.Q939K GGGCTTGCTCCAG 206 6 0.03 162 0 0 124 82 0 0.00 IFT140 9742 mdanderson.org 37 16 1561124 1561124 + Silent SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_014714 exon31 c.C4210A p.R1404R GCCGCCGCCGCAT 60 3 0.05 52 0 0 9 0 0.00 TSC2 7249 mdanderson.org 37 16 2124247 2124247 + Missense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001114382 exon22 c.C2402T p.A801V GCTGTGCCAGCCA 47 3 0.06 67 0 0 54 0 0.00 ACSM2B 348158 broad.mit.edu 37 16 20570613 20570613 + Missense_Mutation SNP T T C rs374648082 TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a ACSM2B,NS,carcinoma,0,1 ACSM2B NM_182617 exon4 c.A334G p.M112V GCAGCATCACTGC 208 7 0.03 209 1 0.004784689 121 1 0 0 KIAA0895L 653319 mdanderson.org 37 16 67212358 67212358 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001040715 exon5 c.C897A p.N299K CTCCGCGTTGTGC 11 2 0.18 20 0 0 5 0 0.00 SMG6 23293 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 2200556 2200556 + Missense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_017575 exon4 c.G2132A p.S711N GGCTTGCTGCGAA 110 20 0.18 119 0 0 51 18 0.35 PITPNM3 83394 mdanderson.org 37 17 6371655 6371655 + Missense_Mutation SNP G G T rs150769456 bycluster;alternate_allele TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a PITPNM3,NS,carcinoma,+1,1 PITPNM3 NM_031220 exon14 c.C1780A p.R594S CATAGCGCATTAC 54 3 0.06 61 0 0 1 1 4 0 0.00 LOC146880 0 broad.mit.edu 37 17 62757842 62757843 + RNA INS - - A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . CCGTCTCAAAAAA 10 5 0.50 11 0 0 0 0 PTPN2 5771 broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 12830954 12830954 + Silent SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . PTPN2 NM_001207013 exon4 c.G348A p.V116V TTTCTCCACAATG 144 6 0.04 176 0 0 37 187 0 0.00 SETBP1 26040 broad.mit.edu 37 18 42531523 42531523 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . SETBP1 NM_015559 exon4 c.G2218T p.E740X CCATCCGAAGAAC 121 4 0.03 133 1 0.007518797 577 6 0 0.00 UHRF1 29128 broad.mit.edu 37 19 4960773 4960773 + RNA SNP G G A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . UHRF1 . . . . CAGACCGTCCTCA 574 6 0.01 395 0 0 56 4 0 0.00 RFX1 5989 broad.mit.edu 37 19 14104595 14104595 + Missense_Mutation SNP C C G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . RFX1 NM_002918 exon2 c.G61C p.A21P GCGGGGCCTGTGG 97 28 0.29 62 16 0.2580645161 63 3 0 0.00 U2AF1L4 199746 mdanderson.org 37 19 36233572 36233572 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_144987 exon6 c.G536A p.W179X TCCTGCCAGGAAC 53 4 0.08 41 0 0 52 0 0.00 ZNF526 116115 mdanderson.org 37 19 42730029 42730029 + Missense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_133444 exon3 c.C1474T p.R492W CACCTGCGGACAC 89 4 0.04 82 0 0 74 1 0.01 SPHK2 56848 mdanderson.org 37 19 49129574 49129574 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_020126 exon3 c.G466T p.A156S GCCACTGCCCTCA 13 2 0.15 9 0 0 14 0 0.00 . 0 bcgsc.ca 37 2 6636107 6636107 + RNA SNP G G T rs112551650 bycluster;byfrequency TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . TGCTTCGTTAAAC 38 5 0.13 49 0 0 0 0 GPAT2 150763 broad.mit.edu 37 2 96687959 96687959 + Missense_Mutation SNP A A T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a GPAT2,trunk,malignant_melanoma,0,2 GPAT2 NM_207328 exon22 c.T2336A p.L779Q TTGTCCAGGCTGG 558 5 0.01 522 1 0.0019157088 46 2 4 0 0.00 CRYGB 1419 broad.mit.edu 37 2 209007463 209007463 + Missense_Mutation SNP T T C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a CRYGB,trunk,malignant_melanoma,+1,1 CRYGB NM_005210 exon3 c.A427G p.R143G ACTGCCTCCCCCT 276 4 0.01 260 1 0.0038461538 24 1 1 0 0.00 NCOA6 23054 broad.mit.edu 37 20 33337630 33337630 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . NCOA6 NM_014071 exon9 c.C2368A p.P790T CTGGTGGCCGCAG 114 6 0.05 104 1 0.0096153846 219 43 0 0.00 . 0 bcgsc.ca 37 22 16389579 16389579 + RNA SNP T T A rs371360996 TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . TGAGCGTGACCAC 22 7 0.32 38 1 0.0263157895 0 0 MN1 4330 mdanderson.org 37 22 28194155 28194155 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_002430 exon1 c.C2377A p.P793T GGCTGGGCTGGAA 26 3 0.12 27 0 0 1 0 0.00 TTC38 55020 mdanderson.org 37 22 46685356 46685356 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_017931 exon12 c.C1140A p.C380X CCTGTGCCAGGCC 31 3 0.10 29 0 0 11 0 0.00 CELSR1 9620 mdanderson.org 37 22 46931248 46931248 + Missense_Mutation SNP G G A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_014246 exon1 c.C1820T p.T607M GAGGCCGTGTCCA 35 3 0.09 41 0 0 8 0 0.00 KLHDC7B 113730 mdanderson.org 37 22 50986623 50986623 + Missense_Mutation SNP A A T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_138433 exon1 c.A28T p.R10W TTCCCCAGGCAAG 35 3 0.09 52 0 0 1 0 0.00 BRPF1 7862 mdanderson.org 37 3 9783075 9783075 + Silent SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_004634 exon5 c.G1806T p.R602R AGCTCGGCTGCTC 44 3 0.07 38 0 0 53 0 0.00 TRH 7200 broad.mit.edu 37 3 129695840 129695840 + Silent SNP G G A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a TRH,right_upper_lobe,carcinoma,0,2 TRH NM_007117 exon3 c.G510A p.E170E AGAAGAGGAGGAG 62 3 0.05 52 0 0 30 2 0 0 PIK3CB 5291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 138374244 138374244 + Missense_Mutation SNP T T A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a PIK3CB,NS,carcinoma,-1,4 PIK3CB NM_006219 exon22 c.A3200T p.D1067V CTGTAGTCTTTCC 181 47 0.26 185 0 0 -1 4 95 26 0.27 IGF2BP2 10644 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 185407330 185407330 + Missense_Mutation SNP A A T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . IGF2BP2 NM_001007225 exon6 c.T490A p.S164T GGGGCGAAGGGGA 196 54 0.28 201 1 0.0049751244 69 76 22 0.29 FBXO45 200933 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 196296078 196296078 + Missense_Mutation SNP A A G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . FBXO45 NM_001105573 exon1 c.A223G p.N75D GATGAGAACAGCG 74 25 0.34 64 1 0.015625 18 53 16 0.30 WDR19 57728 mdanderson.org 37 4 39218846 39218846 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_025132 exon13 c.G1342T p.V448F GGCAAAGTCCAGT 47 3 0.06 77 0 0 8 0 0.00 BMP3 651 bcgsc.ca;mdanderson.org 37 4 81952602 81952602 + Missense_Mutation SNP A A G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . BMP3 NM_001201 exon1 c.A164G p.K55R AAGACAAGGTCTC 116 5 0.04 131 0 0 59 0 0 ADH1C 126 broad.mit.edu 37 4 100261864 100261864 + RNA SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . GGGAAGCCATCTG 75 3 0.04 143 0 0 0 0 NDST4 64579 mdanderson.org 37 4 115751039 115751039 + Silent SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_022569 exon13 c.C2406A p.P802P CTTTTGGGGATCA 57 3 0.05 93 0 0 0 0 OTUD4 54726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 146059616 146059616 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001102653 exon21 c.C2116A p.Q706K CAGTCTGCATAGG 97 33 0.34 111 0 0 58 28 0.48 PLEKHG4B 153478 mdanderson.org 37 5 163611 163611 + Missense_Mutation SNP T T C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_052909 exon11 c.T2356C p.S786P CTGTCCTCCCCCT 59 3 0.05 74 0 0 1 0 0.00 MROH2B 133558 broad.mit.edu 37 5 41057377 41057377 + Missense_Mutation SNP A A G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_173489 exon8 c.T842C p.L281P TGCTGGAGTAAAT 110 3 0.03 118 1 0.0084745763 0 0 LOC100652772 0 broad.mit.edu 37 5 43588450 43588451 + RNA INS - - T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . AGGTTCCTTTTTT 6 2 0.33 5 0 0 0 0 HMGCR 3156 broad.mit.edu 37 5 74654641 74654641 + Missense_Mutation SNP G G T rs373896859 TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . HMGCR NM_000859 exon16 c.G2146T p.V716F GCCAAGGTTGTCA 108 3 0.03 123 0 0 53 160 0 0.00 GRAMD3 65983 broad.mit.edu 37 5 125809020 125809020 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . GRAMD3 NM_001146319 exon5 c.G491T p.W164L AAAACTGGATTTG 239 6 0.03 258 0 0 30 5 0 0.00 LMNB1 4001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 126171941 126171941 + Missense_Mutation SNP C C A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_005573 exon11 c.C1746A p.S582R TAGAAGCTGTGCA 243 52 0.21 267 0 0 259 80 0.31 MEGF10 84466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 126755897 126755897 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_032446 exon13 c.C1588T p.Q530X CCCTGCCAGGTAT 58 13 0.22 67 0 0 0 0 BTN2A3P 54718 hgsc.bcm.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a BTN2A3,NS,carcinoma,0,9 BTN2A3 . . . . ATGGAACCAGCTG 99 6 0.06 95 0 0 0 9 2 0 0.00 VARS2 57176 broad.mit.edu 37 6 30888845 30888845 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . VARS2 NM_001167734 exon16 c.G1573T p.V525L CAGGCTGTGGAGT 116 4 0.03 109 0 0 60 96 0 0.00 ME1 4199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 83949272 83949272 + Missense_Mutation SNP G G C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_002395 exon8 c.C898G p.Q300E CTCCTTGGAATAG 105 13 0.12 125 0 0 8 2 0.25 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90467976 90467976 + Missense_Mutation SNP G G C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_014611 exon19 c.C2700G p.N900K TCACCTGTTTCTT 107 22 0.21 100 0 0 40 6 0.15 C6orf170 221322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 121526289 121526289 + Silent SNP T T G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_152730 exon22 c.A2502C p.I834I CAAAATTATAAGT 392 69 0.18 376 0 0 3 1 0.33 . 0 bcgsc.ca 37 7 35479 35479 + RNA SNP C C T rs62429398 TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . TGCCGCCGCCGCC 465 30 0.06 311 3 0.0096463023 0 0 BRAT1 221927 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 2580652 2580652 + Silent SNP G G C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_152743 exon10 c.C1356G p.V452V CAGGAGGACAGCA 276 100 0.36 207 0 0 211 53 0.25 HOXA4 3201 mdanderson.org 37 7 27170154 27170154 + Silent SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_002141 exon1 c.C199A p.R67R GCTCTCGGCCGCC 11 2 0.18 24 0 0 0 0 ZNF680 340252 ucsc.edu 37 7 63981631 63981631 + Missense_Mutation SNP G G A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a ZNF680,NS,carcinoma,+1,1 ZNF680 NM_178558 exon4 c.C1501T p.R501W AGGACCGGTTAAA 179 1 0.01 121 0 0 58 1 51 15 0.29 INTS4L2 0 broad.mit.edu 37 7 65139108 65139109 + RNA INS - - A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . CAGGAAGAAAAAA 9 4 0.44 9 0 0 0 0 ELN 2006 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 73466166 73466166 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ELN NM_001081753 exon16 c.G901T p.A301S GGCATCGCAGGTA 191 34 0.18 134 1 0.0074626866 81 0 0 MLL5 55904 broad.mit.edu 37 7 104747054 104747054 + Silent SNP G G A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . MLL5 NM_018682 exon19 c.G2682A p.P894P TTCCCCGTATGCT 402 6 0.01 207 0 0 173 26 0 0.00 GSTK1 373156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142961249 142961249 + Missense_Mutation SNP T T A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001143681 exon2 c.T143A p.M48K GGATCATGAAAGA 211 24 0.11 163 0 0 103 17 0.17 ATG9B 285973 broad.mit.edu;mdanderson.org 37 7 150713893 150713893 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ATG9B . . . . AGGTTGGCCAGGA 117 6 0.05 88 0 0 51 2 0 0.00 GALNTL5 168391 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 151716815 151716815 + Missense_Mutation SNP G G C novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_145292 exon9 c.G1261C p.G421R CGACTGGGTTGCA 197 34 0.17 116 0 0 1 0 0.00 CPQ 10404 broad.mit.edu 37 8 97892110 97892110 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_016134 exon4 c.G726T p.M242I AATGATGTCAAGA 343 6 0.02 223 0 0 44 0 0.00 ATAD2 29028 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 124383988 124383988 + Missense_Mutation SNP T T G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ATAD2 NM_014109 exon4 c.A458C p.E153A CGCACTTCAACAT 383 80 0.21 269 2 0.0074349442 160 90 15 0.17 EPPK1 83481 mdanderson.org 37 8 144946192 144946192 + Silent SNP C C T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_031308 exon1 c.G1230A p.R410R CCGGAGCCTGCGT 38 3 0.08 23 0 0 5 0 0.00 BAAT 570 mdanderson.org 37 9 104125233 104125233 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_001127610 exon4 c.C734A p.A245D TAAATAGCCATAG 48 3 0.06 82 0 0 0 0 ZMYND19 116225 ucsc.edu;bcgsc.ca 37 9 140481474 140481474 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . ZMYND19 NM_138462 exon4 c.C304A p.Q102K CCAGTTGCAGGTT 40 4 0.10 35 0 0 16 274 0 0.00 KDM5C 8242 mdanderson.org 37 X 53222378 53222378 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_004187 exon26 c.C4454A p.S1485X GGCCCTGAGCTCC 61 4 0.07 29 0 0 246 1 0.00 HMGB3 3149 mdanderson.org 37 X 150156378 150156378 + Missense_Mutation SNP G G T novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . NM_005342 exon5 c.G594T p.E198D GGAGGAGGATGAA 20 2 0.10 13 0 0 88 0 0.00 EPT1 85465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 26587175 26587175 + Missense_Mutation SNP T T G novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . GTACAGTGCTGTG 58 22 0.38 55 0 0 22 8 0.36 GPX1 2876 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 49395636 49395636 + Missense_Mutation SNP C C A novel TCGA-2G-AAH8-01A-11D-A42Y-10 TCGA-2G-AAH8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cf4e939a-ec2e-42e2-a404-56b7e3c355ea 933fc86a-905f-44dc-897e-20ba42f39b6a . . . . . . CCCCGCCGGCCAG 111 33 0.30 97 0 0 1310 421 0.32