Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ESPNP 0 broad.mit.edu 37 1 17034125 17034126 + RNA INS - - AGCT rs141324796 bycluster;by1000genomes TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . . . . . AGCAGCCAGCTGA 13 10 0.77 9 0 0 0 0 NBL1 4681 broad.mit.edu 37 1 19981664 19981664 + Silent SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 NBL1,NS,carcinoma,0,1 NBL1 NM_182744 exon2 c.C246T p.S82S CCACAGCGGCTGT 98 3 0.03 79 0 0 21 1 216 0 0.00 WNT4 54361 mdanderson.org 37 1 22446566 22446566 + Missense_Mutation SNP C C T rs201176310 alternate_allele TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 WNT4,caecum,carcinoma,+1,1 WNT4 NM_030761 exon5 c.G1033A p.V345M ACTCCACGAGCCG 44 4 0.09 43 0 0 1 1 0 0 LEPRE1 64175 mdanderson.org 37 1 43213951 43213951 + Silent SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_022356 exon12 c.C1758A p.V586V CACGTGGACTGGA 41 3 0.07 50 0 0 57 0 0.00 FAF1 11124 broad.mit.edu 37 1 50907170 50907170 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . FAF1 NM_007051 exon19 c.C1895A p.S632X AATAATGATTTAT 131 4 0.03 121 1 0.0082644628 64 152 0 0.00 NEXN 91624 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 78407806 78407808 + In_Frame_Del DEL AGA AGA - novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 AGA AGA Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . NEXN NM_144573 exon12 c.1571_1573del p.524_525del GGCAAGAGAAGAA 158 26 0.16 164 0 0 77 28 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145109975 145109976 + RNA INS - - C rs11458983 bycluster TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . . . . . AACTTTGCTAAAG 8 3 0.38 5 0 0 0 0 NBPF10 100132406 hgsc.bcm.edu 37 1 145293535 145293535 + Missense_Mutation SNP C C G rs55936365 TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 NBPF10,NS,carcinoma,0,2 NBPF10 NM_001039703 exon1 c.C130G p.L44V TGTTTTCTAACTC 92 9 0.10 67 1 0.0149253731 0 2 19 0 0.00 APH1A 51107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150238547 150238547 + Missense_Mutation SNP T T C novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_001077628 exon7 c.A781G p.I261V GTGGGATGCGCAG 411 124 0.30 323 0 0 198 47 0.24 SLAMF6 114836 broad.mit.edu 37 1 160465888 160465888 + Silent SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 SLAMF6,NS,carcinoma,0,1 SLAMF6 NM_052931 exon2 c.C345A p.T115T TGCAGAGGTCTTT 315 5 0.02 262 0 0 46 1 22 0 0.00 BNIP3 664 mdanderson.org 37 10 133784438 133784438 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_004052 exon4 c.G319T p.E107X TGCTTTCAACTTC 50 3 0.06 65 0 0 438 0 0.00 MUC2 4583 hgsc.bcm.edu 37 11 1092884 1092884 + Missense_Mutation SNP C C T rs201415503 TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 MUC2_ENST00000441003,NS,carcinoma,0,8 MUC2_ENST00000441003 NM_002457 exon30 c.C4703T p.T1568M CCACCACGGTGAC 57 5 0.09 44 1 0.0227272727 0 8 0 0 LTBP3 4054 broad.mit.edu 37 11 65325326 65325328 + In_Frame_Del DEL CAG CAG - novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . LTBP3 NM_001130144 exon1 c.103_105del p.35_35del CAGGCCCAGCAGC 10 4 0.40 7 0 0 55 0 0 TMEM151A 256472 mdanderson.org 37 11 66062288 66062288 + Missense_Mutation SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_153266 exon2 c.G571A p.G191S GCCCGCGGCGAGT 25 2 0.08 27 0 0 0 0 POLD3 10714 broad.mit.edu;mdanderson.org 37 11 74351712 74351712 + Silent SNP A A G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . POLD3 NM_006591 exon12 c.A1302G p.K434K GAAAAAAGAACCC 101 4 0.04 97 0 0 87 40 0 0.00 APOA4 337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 116692311 116692311 + Missense_Mutation SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_000482 exon3 c.C463T p.R155C GCTGGCGCCGCAG 43 11 0.26 38 0 0 0 0 IFFO1 25900 bcgsc.ca;mdanderson.org 37 12 6650731 6650731 + Silent SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . IFFO1 NM_001193457 exon9 c.C1557A p.G519G GTCCAGGCCGCGC 103 5 0.05 84 0 0 55 40 0 0.00 BCL2L14 79370 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 12232368 12232368 + Silent SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_138723 exon2 c.C129T p.F43F TCTCTTCTCACCA 156 29 0.19 122 0 0 4 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398284 25398284 + Missense_Mutation SNP C C G rs121913529 bycluster TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 KRAS_ENST00000256078,NS,adenocarcinoma,0,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G35C p.G12A ACGCCACCAGCTC 285 48 0.17 197 0 0 0 25136 16 3 0.19 KIAA1551 55196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 32134098 32134098 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_018169 exon4 c.C209T p.P70L ATTATCCTCAACA 163 28 0.17 114 0 0 81 12 0.15 TPTE2 93492 bcgsc.ca 37 13 20056686 20056686 + Missense_Mutation SNP T T C rs201542496 TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . TPTE2 NM_199254 exon5 c.A121G p.M41V CTAACATACTTTA 586 13 0.02 572 3 0.0052447552 225 0 0 EBPL 84650 broad.mit.edu 37 13 50235160 50235160 + Missense_Mutation SNP G G C novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 EBPL,NS,carcinoma,0,9 EBPL NM_032565 exon4 c.C565G p.L189V GTTCTAGCCATGA 162 3 0.02 149 0 0 44 9 127 0 0.00 TPP2 7174 mdanderson.org 37 13 103290652 103290652 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_003291 exon15 c.G1900T p.V634F ACTGCAGTTATAG 33 3 0.09 41 0 0 49 0 0.00 CLEC14A 161198 mdanderson.org 37 14 38725067 38725067 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_175060 exon1 c.G161A p.C54Y AGGATGCAGGCCT 23 2 0.09 16 0 0 1 0 0.00 PNN 5411 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 39651005 39651005 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_002687 exon9 c.G2092T p.G698C CGATCAGGCAAAA 58 4 0.07 39 0 0 370 0 0.00 MTHFD1 4522 broad.mit.edu 37 14 64914955 64914955 + Silent SNP A A G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . MTHFD1 NM_005956 exon23 c.A2199G p.K733K TGAAAAAGGCTTC 116 4 0.03 92 0 0 61 251 0 0.00 ELMSAN1 91748 broad.mit.edu 37 14 74194213 74194213 + Missense_Mutation SNP T T G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_194278 exon5 c.A2110C p.T704P GCGGGGTTACTTC 84 22 0.26 45 10 0.2222222222 35 3 0.09 IRF2BPL 64207 mdanderson.org 37 14 77493340 77493340 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_024496 exon1 c.G796A p.A266T CGCTGGCCGGGCC 21 2 0.10 22 0 0 85 0 0.00 CEP170B 283638 mdanderson.org 37 14 105352414 105352414 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_001112726 exon11 c.G1982T p.W661L AGAAGTGGGTGTC 46 3 0.07 44 0 0 15 0 0.00 LOXL1 4016 mdanderson.org 37 15 74219685 74219685 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_005576 exon1 c.G561T p.Q187H CAGCCAGTACGAG 45 3 0.07 35 0 0 7 0 0.00 SCAMP2 10066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75143705 75143705 + Missense_Mutation SNP T T G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_005697 exon5 c.A461C p.Y154S CACAGATAGTAGA 73 7 0.10 49 0 0 192 35 0.18 NETO2 81831 mdanderson.org 37 16 47163244 47163244 + Silent SNP A A G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_001201477 exon3 c.T123C p.P41P GGTTGCAGGAATA 47 3 0.06 42 0 0 58 0 0.00 PHKB 5257 mdanderson.org 37 16 47531334 47531334 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_000293 exon2 c.G101T p.S34I TTAAAAGCATTAA 50 3 0.06 48 0 0 35 0 0.00 HSF4 3299 mdanderson.org 37 16 67200242 67200242 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_001538 exon7 c.C505T p.R169W TTGTGGCGGGAGG 104 5 0.05 89 0 0 4 0 0.00 ANKRD11 29123 broad.mit.edu 37 16 89351844 89351844 + Missense_Mutation SNP T T C novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . ANKRD11 NM_001256183 exon9 c.A1106G p.K369R TAGTCCTTTTTCA 172 4 0.02 147 0 0 195 79 0 0.00 PHF23 79142 mdanderson.org 37 17 7140047 7140047 + Silent SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_024297 exon4 c.C199A p.R67R CTCCTCGCAATGG 52 3 0.06 60 0 0 163 0 0.00 MYOCD 93649 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 12656145 12656145 + Missense_Mutation SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . MYOCD NM_001146312 exon10 c.G1540A p.D514N GGGCTGGACTCCG 129 23 0.18 137 1 0.0072992701 291 0 0 MYO1D 4642 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 31094740 31094740 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . MYO1D NM_015194 exon7 c.G745A p.V249I CAACAACTCTGAA 49 5 0.10 56 0 0 93 16 7 0.44 KIF19 124602 mdanderson.org 37 17 72350311 72350311 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_153209 exon18 c.G2319T p.E773D GAAGGAGATCCTG 49 3 0.06 29 0 0 0 0 FBF1 85302 mdanderson.org 37 17 73909787 73909787 + Missense_Mutation SNP C C A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_001080542 exon27 c.G3198T p.Q1066H ACCACTCTGGCTG 18 2 0.11 14 0 0 16 0 0.00 MED16 10025 mdanderson.org 37 19 886142 886142 + Silent SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_005481 exon5 c.G507A p.T169T GAACAGCGTGAGC 23 3 0.13 17 0 0 30 0 0.00 LYL1 4066 broad.mit.edu 37 19 13211480 13211480 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . LYL1 NM_005583 exon3 c.C418A p.L140M CAGCCAGGTCCAG 221 5 0.02 160 0 0 17 24 0 0.00 PRX 57716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40901937 40901937 + Silent SNP C C A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_181882 exon7 c.G2322T p.V774V CAGCTTCACCTCT 88 33 0.38 64 0 0 6 4 0.67 ACPT 93650 bcgsc.ca 37 19 51293729 51293729 + Missense_Mutation SNP C C G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 ACPT,NS,carcinoma,0,1 ACPT NM_033068 exon1 c.C58G p.L20V CTGCTGCTGGTGC 34 4 0.12 44 0 0 43 1 0 0 INO80B 83444 mdanderson.org 37 2 74684838 74684838 + Silent SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_031288 exon5 c.G918A p.P306P CCCGCCGCCGCGC 32 3 0.09 27 0 0 29 0 0.00 SFTPB 6439 mdanderson.org 37 2 85890594 85890594 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_198843 exon9 c.C913A p.L305M GCGGCAGCCATTC 55 3 0.05 73 0 0 2 0 0.00 . 400986 broad.mit.edu 37 2 96646519 96646519 + Missense_Mutation SNP T T A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 ENSG00000174501,NS,carcinoma,0,2 . . . . . ACAGCATGTATGA 294 5 0.02 202 1 0.004950495 2 0 0 ANKRD36B 57730 mdanderson.org 37 2 98165905 98165905 + Missense_Mutation SNP T T C novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_025190 exon20 c.A1454G p.K485R CCATCCTTTTTTT 27 2 0.07 14 0 0 3 0 0.00 INPP4A 3631 broad.mit.edu 37 2 99185080 99185080 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . INPP4A NM_001134224 exon23 c.G2482T p.V828L AGTTTGGTGCGGT 427 6 0.01 304 0 0 205 42 0 0.00 PPIG 9360 broad.mit.edu 37 2 170493804 170493804 + Frame_Shift_Del DEL A A - novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . PPIG NM_004792 exon14 c.2036delA p.E679fs GCAGGGAAAAAAA 186 7 0.04 158 0 0 100 178 0 0.00 OBSL1 23363 broad.mit.edu 37 2 220423154 220423154 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . OBSL1 NM_001173431 exon10 c.C3254A p.A1085E CGGGCTGCCGGGT 69 8 0.12 35 1 0.0285714286 120 8 1 0.13 ANO7 50636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242142853 242142853 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 ANO7,NS,carcinoma,-1,1 ANO7 NM_001001891 exon9 c.C991T p.P331S TACCAGCCCCTGG 498 77 0.15 375 0 0 -1 1 1 0 0.00 RALY 22913 broad.mit.edu 37 20 32664877 32664877 + Silent SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . RALY NM_016732 exon8 c.C702T p.G234G CGGCGGCGGTGGT 150 4 0.03 92 1 0.0108695652 44 140 2 0.01 PROCR 10544 broad.mit.edu 37 20 33762727 33762727 + Missense_Mutation SNP G G T rs200377875 TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 PROCR,NS,carcinoma,0,3 PROCR NM_006404 exon2 c.G293T p.R98L TCGTGCGCCTGGT 71 5 0.07 39 0 0 26 3 37 2 0.05 PTPRT 11122 broad.mit.edu 37 20 40790055 40790055 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 PTPRT,bladder,carcinoma,-2,1 PTPRT NM_133170 exon18 c.C2676A p.D892E CAGCAAGTCAGCC 207 5 0.02 184 0 0 372 1 2 0 0.00 UCKL1 54963 mdanderson.org 37 20 62572531 62572531 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_017859 exon9 c.C954A p.H318Q CAGCGGGTGGCAC 24 2 0.08 14 0 0 77 0 0.00 KRTAP10-4 386672 mdanderson.org 37 21 45994676 45994676 + Silent SNP A A G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_198687 exon1 c.A1041G p.P347P CCAGCCAGCTTGC 52 5 0.10 30 0 0 0 0 LIF 0 broad.mit.edu 37 22 30642576 30642576 + Missense_Mutation SNP T T G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . LIF . . . . GGCGGGTGGGCGT 53 35 0.66 61 35 0.5737704918 18 0 0 BRD1 23774 mdanderson.org 37 22 50192713 50192713 + Missense_Mutation SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_014577 exon3 c.C1579T p.R527W GCAGCCGCTGCCA 50 3 0.06 36 0 0 40 0 0.00 DHX30 22907 broad.mit.edu 37 3 47891431 47891431 + Missense_Mutation SNP C C T rs144869940 TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . DHX30 NM_138615 exon22 c.C3406T p.R1136W ACCGTGCGGCTGC 109 4 0.04 104 0 0 101 112 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599320 55599320 + Missense_Mutation SNP G G C rs121913506 bycluster TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446C p.D816H GCCAGAGACATCA 98 24 0.24 96 0 0 0 932 181 121 0.67 AGA 175 broad.mit.edu 37 4 178355608 178355608 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . AGA NM_000027 exon7 c.C734A p.A245D GCATAGGCTCCAG 260 5 0.02 243 0 0 39 80 1 0.01 MIR1305 0 broad.mit.edu 37 4 183090235 183090236 + RNA INS - - AT rs35135947 bycluster;by1000genomes TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . . . . . CACACACACACAC 15 5 0.33 8 0 0 0 0 PIK3R1 5295 broad.mit.edu 37 5 67588169 67588169 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 PIK3R1,colon,carcinoma,+2,1 PIK3R1 NM_181523 exon8 c.G999T p.W333C TGAATGGTACTGG 108 4 0.04 112 0 0 869 1 35 0 0.00 FBN2 2201 mdanderson.org 37 5 127800526 127800526 + Silent SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_001999 exon6 c.C717T p.C239C GGCACAGCACAGA 93 4 0.04 99 0 0 0 0 SPRY4 81848 mdanderson.org 37 5 141694655 141694655 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_030964 exon3 c.C88A p.Q30K CGCTCTGTGGGAT 39 3 0.08 39 0 0 137 0 0.00 FAM8A1 51439 hgsc.bcm.edu 37 6 17602826 17602826 + Nonsense_Mutation SNP G G T rs74444948 bycluster;byfrequency TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 FAM8A1,NS,carcinoma,-1,2 FAM8A1 NM_016255 exon2 c.G718T p.E240X GGCAGAGAATATG 68 8 0.12 49 1 0.0204081633 0.008 -1 2 10 0 0.00 BCKDHB 594 broad.mit.edu 37 6 80838937 80838937 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . BCKDHB NM_000056 exon3 c.G334T p.D112Y TTGCGAGACAAAT 414 6 0.01 275 0 0 36 19 0 0.00 MIR548H3 100302287 hgsc.bcm.edu 37 6 97720567 97720567 + RNA SNP A A G rs200808076 alternate_allele TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . . . . . CAAATGAAACAAG 81 8 0.10 79 0 0 0 0 . 0 bcgsc.ca 37 7 35473 35473 + RNA SNP T T C novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . . . . . TGCTGCTGCCGCC 567 21 0.04 425 12 0.0282352941 3 1 0.33 rescued with RNA-seq GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . . . . . CCGGGGTCCTTGA 174 5 0.03 116 0 0 0 0 FAM185A 222234 broad.mit.edu 37 7 102401776 102401776 + Silent SNP T T G rs2537454 TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . FAM185A NM_001145268 exon4 c.T711G p.G237G AGATGGTTTGCTG 688 4 0.01 484 1 0.0020661157 10 7 0 0.00 DENND2A 27147 broad.mit.edu 37 7 140221669 140221669 + Missense_Mutation SNP C C T rs202110826 by1000genomes TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . DENND2A NM_015689 exon16 c.G2897A p.R966Q TCCTGCCGGCGCA 208 5 0.02 122 0 0 132 30 0 0.00 TRPV5 56302 broad.mit.edu 37 7 142605705 142605705 + Missense_Mutation SNP T T C novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . TRPV5 NM_019841 exon15 c.A2165G p.D722G TCTCCATCCCCCT 161 6 0.04 132 0 0 164 0 0 CLDN23 137075 broad.mit.edu;mdanderson.org 37 8 8560263 8560263 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . CLDN23 NM_194284 exon1 c.G355T p.V119F TCGGGCGTCGTGC 53 3 0.06 48 0 0 5 1 0 0.00 PPP2R2A 5520 broad.mit.edu 37 8 26217684 26217684 + Splice_Site SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . PPP2R2A NM_002717 exon5 c.347-1G>T . TTCCCAGATAAAA 54 3 0.06 53 0 0 44 1 0 0.00 ADAM2 2515 broad.mit.edu 37 8 39694657 39694657 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . ADAM2 NM_001464 exon2 c.C130A p.Q44K TTACCTGCGATTC 227 5 0.02 151 0 0 124 0 0 KANK1 23189 broad.mit.edu 37 9 732477 732477 + Silent SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 KANK1_ENST00000382303,NS,carcinoma,0,4 KANK1 NM_001256876 exon10 c.G3105A p.E1035E AGAAGAGGAGGAG 141 4 0.03 101 1 0.0099009901 231 4 57 0 0.00 PPAPDC2 403313 mdanderson.org 37 9 4662565 4662565 + Missense_Mutation SNP C C A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_203453 exon1 c.C190A p.P64T GAGAGCCCAGTTC 9 1 0.11 11 0 0 1 0 0.00 RUSC2 9853 broad.mit.edu 37 9 35556093 35556093 + Missense_Mutation SNP G G A novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . RUSC2 NM_014806 exon4 c.G2801A p.G934D TCCCTGGCTCCCT 190 5 0.03 153 0 0 88 65 0 0.00 ZNF618 114991 broad.mit.edu 37 9 116811230 116811230 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . ZNF618 NM_133374 exon14 c.G1369T p.G457C GGCATCGGTGTCA 81 4 0.05 63 0 0 184 14 0 0.00 RAPGEF1 2889 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 134497251 134497253 + In_Frame_Del DEL AGG AGG - novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 AGG AGG Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . RAPGEF1 NM_198679 exon11 c.1839_1841del p.613_614del CACTGAAGGAGTC 144 23 0.16 143 0 0 126 93 0 0.00 ADAMTS13 11093 mdanderson.org 37 9 136297802 136297802 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_139025 exon9 c.G1081T p.G361C GAATGTGGCGTGG 27 2 0.07 27 0 0 0 0 UBAC1 10422 mdanderson.org 37 9 138852939 138852939 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_016172 exon1 c.G70A p.A24T ACTCGGCGCCGTC 34 3 0.09 34 0 0 47 0 0.00 ND5 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 13448 13448 + Missense_Mutation SNP C C T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . ENST00000361567 exon1 c.C1112T p.T371I CTTCAACCTCCCT 20 9 0.45 18 0 0 0 0 PNPLA4 8228 broad.mit.edu 37 X 7868821 7868821 + Missense_Mutation SNP A A G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . PNPLA4 NM_004650 exon7 c.T668C p.L223P GGAAAAAGGGCTT 430 8 0.02 300 0 0 24 20 0 0.00 CYLC1 1538 broad.mit.edu 37 X 83129489 83129489 + Silent SNP A A G novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . CYLC1 NM_021118 exon4 c.A1773G p.K591K TGAAAAAGGGGAA 210 3 0.01 211 0 0 272 0 0 SASH3 54440 mdanderson.org 37 X 128926627 128926627 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . . NM_018990 exon6 c.G616T p.E206X ATCATTGAAAAGC 36 3 0.08 29 0 0 52 0 0.00 USP9Y 8287 broad.mit.edu 37 Y 14952959 14952959 + Missense_Mutation SNP G G T novel TCGA-2G-AAHA-01A-11D-A42Y-10 TCGA-2G-AAHA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fc8f661f-51cf-492d-aebf-c9ea75151dae 8cf937d8-88aa-4896-adb5-fd5479580dc3 . USP9Y NM_004654 exon37 c.G6112T p.A2038S CCTGAAGCAGAAG 180 4 0.02 149 0 0 49 13 0 0.00