Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV LRRC47 57470 mdanderson.org 37 1 3703430 3703430 + Missense_Mutation SNP G G T rs151150139 bycluster;byfrequency;alternate_allele TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_020710 exon2 c.C1060A p.R354S GGAAGCGCTTGAG 50 3 0.06 70 0 0 124 0 0.00 CROCCP3 0 broad.mit.edu 37 1 16812950 16812950 + RNA SNP A A G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . CAGGTCACTTTGC 65 8 0.12 58 1 0.0172413793 3 0 0.00 MUL1 79594 broad.mit.edu 37 1 20834437 20834437 + Silent SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . MUL1 NM_024544 exon1 c.C81A p.S27S GTACACGGAGTAC 89 4 0.04 136 2 0.0147058824 34 7 0 0.00 FOXD3 27022 hgsc.bcm.edu 37 1 63789225 63789225 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_012183 exon1 c.G496A p.G166S CTGAGCGGCATCT 94 4 0.04 113 0 0 0 0 MTF2 22823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 93599295 93599295 + Missense_Mutation SNP A A G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_007358 exon12 c.A1196G p.K399R GAAAGAAAAAATC 36 9 0.25 43 0 0 54 19 0.35 SEC22B 9554 broad.mit.edu 37 1 145109975 145109976 + RNA INS - - C rs11458983 bycluster TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . AACTTTGCTAAAG 9 3 0.33 11 0 0 0 0 S100A7 6278 broad.mit.edu 37 1 153430403 153430403 + Missense_Mutation SNP T T C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . S100A7 NM_002963 exon3 c.A185G p.K62R TTGTCCTTTTTCT 222 5 0.02 249 0 0 23 11 0 0.00 OPN3 23596 mdanderson.org 37 1 241803223 241803223 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_014322 exon1 c.G334A p.V112M AGCCCACGGTGTC 51 3 0.06 66 0 0 4 0 0.00 PIP4K2A 5305 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 22830852 22830852 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_005028 exon8 c.G917A p.G306D TGGGTGCCATCGC 126 6 0.05 156 0 0 45 0 0.00 . 653259 bcgsc.ca 37 10 47727808 47727809 + Splice_Site INS - - C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . ACAGTTAACTCAT 25 3 0.12 89 0 0 0 0 CHST3 9469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 73768085 73768085 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_004273 exon3 c.G1296A p.M432I CAGCATGCCCTTC 68 18 0.26 72 0 0 5 2 0.40 FAM24B-CUZD1 0 hgsc.bcm.edu 37 10 124596904 124596904 + RNA SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . AGAATTGGGCAGC 100 19 0.19 83 0 0 0 0 DNHD1 144132 hgsc.bcm.edu;mdanderson.org 37 11 6569159 6569159 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 DNHD1,colon,carcinoma,0,2 DNHD1 NM_144666 exon22 c.G6794T p.R2265L TAAACCGGTCCCA 60 3 0.05 66 0 0 0 2 15 0 0.00 PRDM11 56981 mdanderson.org 37 11 45203849 45203849 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001256695 exon3 c.G172T p.G58W CTGAAGGGGAAGC 44 3 0.07 106 0 0 0 0 RCOR2 283248 bcgsc.ca 37 11 63682723 63682723 + Silent SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . RCOR2 NM_173587 exon3 c.C192A p.P64P GCGTGCGGGGCTC 47 4 0.09 91 0 0 43 52 0 0.00 TYR 7299 mdanderson.org 37 11 88961033 88961033 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_000372 exon3 c.G1079T p.S360I CTCAAAGCAGCAT 42 3 0.07 100 0 0 0 0 RNF26 79102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 119206597 119206597 + Silent SNP C C G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_032015 exon1 c.C765G p.T255T GGCTACCCAGGCA 31 8 0.26 45 0 0 55 18 0.33 GRAMD1B 57476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123489463 123489463 + Missense_Mutation SNP C C G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_020716 exon18 c.C1964G p.T655S AATACACCACGCA 72 21 0.29 137 0 0 4 0 0.00 RBP5 0 broad.mit.edu 37 12 7281645 7281674 + RNA DEL TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC - novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . RBP5 . . . . TGGCTTTTCCTGA 13 4 0.31 6 0 0 20 5 0 0.00 FAM186A 121006 broad.mit.edu 37 12 50747002 50747002 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . FAM186A NM_001145475 exon4 c.G3613A p.V1205I GAGAGACCCTCAG 90 8 0.09 120 1 0.0083333333 181 0 0 NACA 4666 broad.mit.edu 37 12 57111378 57111378 + Silent SNP A A G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 NACA_ENST00000454682,NS,malignant_melanoma,0,1 NACA . . . . AGCTGGAGGAGTG 116 11 0.09 141 3 0.0212765957 131 1 0 0 NUP107 57122 mdanderson.org 37 12 69135740 69135740 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_020401 exon27 c.G2650T p.E884X TCCTCTGAGCGCC 81 5 0.06 108 0 0 332 1 0.00 ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 72028578 72028578 + Nonsense_Mutation SNP T T A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_144982 exon11 c.A2266T p.K756X CAGATTTTGGAGG 48 11 0.23 59 0 0 0 0 SETD3 84193 mdanderson.org 37 14 99876548 99876548 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_199123 exon9 c.C854A p.P285Q TCTTCTGGTGTCT 53 3 0.06 73 0 0 0 0 AHNAK2 113146 broad.mit.edu 37 14 105414109 105414109 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . AHNAK2 NM_138420 exon7 c.C7679T p.A2560V AGGCCGGCTCCCT 175 6 0.03 185 0 0 719 0 0 MAN2C1 4123 broad.mit.edu;mdanderson.org 37 15 75654243 75654243 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . MAN2C1 NM_001256494 exon9 c.C1054T p.Q352X GGCCCTGCAAAAA 82 4 0.05 75 0 0 76 13 0 0.00 ABCA3 21 mdanderson.org 37 16 2338251 2338251 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001089 exon21 c.C2780A p.A927E TGTGCCGCCACCA 38 3 0.08 32 0 0 5 0 0.00 ZNF764 92595 mdanderson.org 37 16 30566959 30566959 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_033410 exon3 c.C783A p.C261X GTCGGCGCAGCCA 17 2 0.12 17 0 0 7 0 0.00 ZNF629 23361 mdanderson.org 37 16 30794398 30794398 + Silent SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001080417 exon3 c.C1251A p.L417L GTTGATGAGGTTG 43 3 0.07 56 0 0 0 0 ZNF423 23090 mdanderson.org 37 16 49671203 49671203 + Silent SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_015069 exon4 c.C1860A p.L620L TGCTGAGAGCCGC 68 5 0.07 113 0 0 5 0 0.00 COX4I1 1327 broad.mit.edu 37 16 85838605 85838605 + Silent SNP T T C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . COX4I1 NM_001861 exon3 c.T136C p.L46L CACCCCTTGCCGG 93 15 0.16 123 17 0.1382113821 20 2211 66 0.03 ALOX12B 242 mdanderson.org 37 17 7979514 7979514 + Missense_Mutation SNP G G T rs141010860 alternate_allele TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001139 exon11 c.C1511A p.A504E CACACCGCCAAGC 40 3 0.08 67 0 0 1 0 0.00 RAI1 10743 mdanderson.org 37 17 17701342 17701342 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_030665 exon3 c.G5080T p.A1694S AACCCGGCCAACT 67 5 0.07 102 0 0 36 0 0.00 LRRC37BP1 0 broad.mit.edu 37 17 28935711 28935713 + RNA DEL GTA GTA - novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 GTA GTA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . ATACATGTAGTAT 12 5 0.42 7 0 0 0 0 GAS2L2 246176 broad.mit.edu 37 17 34077157 34077157 + Missense_Mutation SNP T T G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 GAS2L2,right_upper_lobe,carcinoma,0,2 GAS2L2 NM_139285 exon2 c.A566C p.D189A GAGGGGTCGGGCG 80 30 0.38 83 29 0.3493975904 94 2 0 0 SMARCE1 6605 mdanderson.org 37 17 38798746 38798746 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_003079 exon4 c.C117A p.Y39X CAGCCTGTAGTTG 46 3 0.07 73 0 0 128 0 0.00 KRTAP2-4 85294 hgsc.bcm.edu 37 17 39221816 39221816 + Nonsense_Mutation SNP C C T rs200049107 TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 KRTAP2-4,trunk,malignant_melanoma,0,1 KRTAP2-4 NM_033184 exon1 c.G282A p.W94X GGTGGCCCAGCAG 15 3 0.20 16 2 0.125 0 1 0 0 SP6 80320 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 45924781 45924781 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . SP6 NM_001258248 exon2 c.G1015A p.A339T CCTTGGCGCCCTC 120 8 0.07 135 0 0 26 2 0 0.00 CARD14 79092 mdanderson.org 37 17 78164655 78164655 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_024110 exon7 c.C1046T p.A349V TGAATGCGCTGCA 35 3 0.09 37 0 0 0 0 ENDOV 284131 ucsc.edu 37 17 78409975 78409975 + Missense_Mutation SNP A A G rs12939348 bycluster;byfrequency;by2hit2allele TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . ENDOV . . . . CGTCTCATTCCTG 39 4 0.10 50 2 0.04 26 19 1 0.05 CCDC57 284001 mdanderson.org 37 17 80086422 80086422 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_198082 exon15 c.C2293A p.Q765K GGGGCTGGTGCTT 48 3 0.06 81 0 0 12 0 0.00 MIER2 54531 broad.mit.edu 37 19 327235 327235 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . MIER2 NM_017550 exon5 c.C391T p.L131F CTGAAAGCAAATC 92 15 0.16 87 6 0.0689655172 51 90 0 0.00 S1PR2 9294 mdanderson.org 37 19 10334950 10334950 + Missense_Mutation SNP C C T rs141230424 bycluster;by1000genomes TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_004230 exon2 c.G632A p.R211H TAGATGCGCACGT 43 3 0.07 52 0 0 0 1 0 0.00 SMARCA4 6597 ucsc.edu 37 19 11123647 11123647 + Missense_Mutation SNP T T G rs201128299 bycluster;byfrequency TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 SMARCA4_ENST00000358026,NS,carcinoma,-1,2 SMARCA4 NM_003072 exon16 c.T2297G p.V766G GGCTGGTGTCCCT 159 14 0.09 150 10 0.0666666667 502 2 94 21 0.22 NACC1 112939 mdanderson.org 37 19 13246749 13246749 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_052876 exon2 c.C728T p.A243V AGCCAGCCGGTGG 22 2 0.09 42 0 0 18 0 0.00 EIF5B 9669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 99992927 99992927 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_015904 exon10 c.G1670A p.S557N GAGAAAGTGAAGG 120 21 0.18 100 0 0 228 55 0.24 FARP2 9855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242350476 242350476 + Missense_Mutation SNP G G C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_014808 exon6 c.G439C p.D147H AAGAGAGACCTGC 52 11 0.21 78 0 0 2 1 0.50 SIRPG 55423 broad.mit.edu 37 20 1615980 1615980 + Silent SNP C C T rs147655438 TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 SIRPG,NS,carcinoma,0,1 SIRPG NM_018556 exon4 c.G1014A p.A338A GCTGACCGCCAGC 99 4 0.04 155 0 0 61 1 14 0 0.00 FOXA2 3170 broad.mit.edu 37 20 22562677 22562677 + Missense_Mutation SNP G G C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . FOXA2 NM_021784 exon2 c.C1203G p.H401Q GGGTTGGTGGTGG 166 3 0.02 223 1 0.0044843049 48 0 0 RALGAPB 57148 broad.mit.edu 37 20 37195815 37195815 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . RALGAPB NM_020336 exon26 c.G3894T p.Q1298H GAAACAGCCATCC 99 3 0.03 145 0 0 134 43 0 0.00 MIR3648 0 broad.mit.edu 37 21 9825838 9825839 + RNA INS - - GCG rs372061766 bycluster TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . CGCGACTGCGGCG 11 5 0.45 6 0 0 0 0 ADAMTS5 11096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 28302337 28302337 + Missense_Mutation SNP C C G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 ADAMTS5,colon,carcinoma,+1,2 ADAMTS5 NM_007038 exon7 c.G2093C p.C698S CGGACGCAGACGG 135 48 0.36 157 0 0 1 2 11 4 0.36 HLCS 3141 hgsc.bcm.edu 37 21 38269383 38269383 + Missense_Mutation SNP C C G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_000411 exon7 c.G1228C p.E410Q CTCCCTCGGAGTC 100 4 0.04 102 0 0 16 0 0.00 KRTAP10-2 386679 mdanderson.org 37 21 45971147 45971147 + Silent SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_198693 exon1 c.C195T p.S65S GCAGGCGCTGGGC 39 3 0.08 36 0 0 0 0 POM121L9P 0 broad.mit.edu 37 22 24659809 24659809 + RNA SNP G G A rs376621154 TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . ATCTGCGCACCCG 18 9 0.50 15 0 0 0 0 POM121L9P 0 broad.mit.edu 37 22 24659813 24659813 + RNA SNP C C T rs368832816 TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . GCGCACCCGGAGG 18 9 0.50 13 0 0 0 0 PRR14L 253143 broad.mit.edu 37 22 32109902 32109902 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . PRR14L NM_173566 exon4 c.C3923A p.A1308D TTGCAAGCATTCT 165 4 0.02 141 0 0 198 0 0 C22orf34 0 broad.mit.edu 37 22 50014178 50014178 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . C22orf34 . . . . GCAATCGCCTCCA 43 4 0.09 88 0 0 2 1 0 0.00 DCLK3 85443 mdanderson.org 37 3 36779310 36779310 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_033403 exon2 c.C841A p.Q281K CCGCCTGGTGCTC 46 3 0.07 73 0 0 5 0 0.00 GPR87 53836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 151012124 151012124 + Missense_Mutation SNP C C G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 GPR87,colon,carcinoma,+1,1 GPR87 NM_023915 exon3 c.G910C p.A304P TACACGCAGACAA 133 40 0.30 246 2 0.0081300813 1 1 0 0 WFS1 7466 mdanderson.org 37 4 6293696 6293696 + Silent SNP C C T rs1801213 bycluster;byfrequency;byhapmap;by1000genomes TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 WFS1,NS,carcinoma,0,1 WFS1 NM_006005 exon6 c.C684T p.R228R GAGGCGCATGCTG 120 3 0.03 199 0 0 0 1 13 0 0.00 KLB 152831 mdanderson.org 37 4 39448478 39448478 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_175737 exon4 c.C2132T p.A711V ACGGGGCGGCGCA 16 2 0.13 22 0 0 2 0 0.00 LRRC66 339977 broad.mit.edu 37 4 52861480 52861480 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . LRRC66 NM_001024611 exon4 c.C1708T p.R570C CATAACGGCTTGA 263 4 0.02 136 1 0.0073529412 128 2 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599340 55599340 + Missense_Mutation SNP T T G rs121913514 alternate_allele TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 KIT,NS,malignant_melanoma,+2,48 KIT NM_000222 exon17 c.T2466G p.N822K TTCTAATTATGTG 131 102 0.78 95 0 0 2 48 62 52 0.84 CAMK2D 817 mdanderson.org 37 4 114458562 114458562 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_172115 exon7 c.C452T p.A151V ACAGCTGCTCCCT 51 3 0.06 96 1 0.0104166667 0 0 PALLD 23022 broad.mit.edu 37 4 169632802 169632802 + Silent SNP T T C rs370282753 TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . PALLD NM_001166108 exon10 c.T1692C p.P564P TCCACCTCCCCCT 214 6 0.03 323 1 0.0030959752 179 2 0 0.00 MIER3 166968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 56219619 56219619 + Missense_Mutation SNP C C G rs375553373 alternate_allele TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_152622 exon12 c.G1091C p.G364A GTCCCACCCAAAG 172 54 0.31 265 0 0 4 1 0.25 PRRC1 133619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 126869374 126869374 + Missense_Mutation SNP G G C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_130809 exon6 c.G817C p.V273L GCTGCTGTCCGAG 103 22 0.21 143 0 0 16 3 0.19 NSD1 64324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176638277 176638277 + Silent SNP A A T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_022455 exon5 c.A2877T p.G959G TTCAGGAGGCTCC 168 50 0.30 226 0 0 1 1 1.00 MUC21 394263 mdanderson.org 37 6 30954594 30954594 + Missense_Mutation SNP G G C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001010909 exon2 c.G642C p.E214D CTCTGAGTCCAGA 45 3 0.07 65 0 0 18 0 0.00 TNXB 7148 broad.mit.edu 37 6 32012870 32012870 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . TNXB NM_019105 exon32 c.C10834A p.L3612M GCTCCAGGCCTGA 301 5 0.02 297 1 0.0033670034 553 4 0 0.00 RGL2 5863 mdanderson.org 37 6 33263293 33263293 + Missense_Mutation SNP C C A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 RGL2,NS,carcinoma,0,1 RGL2 NM_004761 exon7 c.G1012T p.V338L CTGCCACGCGGAT 50 3 0.06 60 0 0 0 1 16 0 0.00 TOMM6 100188893 mdanderson.org 37 6 41756999 41756999 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001134493 exon2 c.C158T p.A53V TCTTTGCTGCGGG 74 4 0.05 72 0 0 2481 2 0.00 GRM1 2911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 146720361 146720361 + Missense_Mutation SNP C C G novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 GRM1,leg,malignant_melanoma,-1,1 GRM1 NM_000838 exon8 c.C2186G p.P729R TGGAACCCCCTAT 167 22 0.13 221 0 0 -1 1 0 0 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . TCTTGCGCAGAAT 122 5 0.04 122 1 0.0081967213 10 0 0.00 GATAD1 57798 mdanderson.org 37 7 92077209 92077209 + Missense_Mutation SNP G G A novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_021167 exon1 c.G166A p.G56S GGCAGCGGCGGCG 23 3 0.13 20 0 0 0 0 COL1A2 1278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 94042436 94042436 + Silent SNP T T C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_000089 exon26 c.T1545C p.L515L TGGTCTTGCTGGT 238 53 0.22 239 0 0 91 4 0.04 ABCF2 10061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150921079 150921079 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_005692 exon4 c.G489A p.M163I GACTTCCATCACA 94 14 0.15 101 0 0 80 25 0.31 LEPROTL1 23484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 29963269 29963269 + Missense_Mutation SNP G G T rs371805932 TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_015344 exon4 c.G287T p.W96L TTGAGTGGGGAGC 88 9 0.10 89 0 0 140 27 0.19 BAI1 575 mdanderson.org 37 8 143560839 143560839 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001702 exon7 c.C1717T p.R573W ACCCAGCGGTGTC 24 2 0.08 34 0 0 0 0 OPLAH 26873 hgsc.bcm.edu 37 8 145111362 145111362 + Silent SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_017570 exon14 c.C1909A p.R637R TGCCCCGCACTCG 86 4 0.05 92 0 0 5 0 0.00 GLIS3 169792 hgsc.bcm.edu 37 9 3829449 3829449 + Silent SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 GLIS3_ENST00000381971,NS,carcinoma,0,2 GLIS3_ENST00000381971 NM_001042413 exon10 c.C2517A p.P839P GGAATCGGGGTAG 86 4 0.05 131 0 0 0 2 0 0 PIGO 84720 mdanderson.org 37 9 35091711 35091711 + Missense_Mutation SNP C C T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 PIGO,face,carcinoma,+1,1 PIGO NM_032634 exon7 c.G2173A p.A725T CATCTGCCCCCGA 24 3 0.13 22 0 0 1 1 22 0 0.00 COL15A1 1306 mdanderson.org 37 9 101807052 101807052 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_001855 exon26 c.G2679T p.M893I ACCAATGGTAAGT 46 3 0.07 89 0 0 10 0 0.00 ASTN2 23245 mdanderson.org 37 9 119976991 119976991 + Missense_Mutation SNP G G C novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 ASTN2,right_upper_lobe,carcinoma,+2,2 ASTN2 NM_014010 exon3 c.C661G p.L221V ACACCAGCAGCAG 37 3 0.08 40 0 0 2 2 0 0 WWC3 55841 mdanderson.org 37 X 10098006 10098006 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . NM_015691 exon18 c.G2443T p.A815S TGGCAAGCGGACT 40 3 0.08 53 0 0 0 0 CPNE9 151835 mdanderson.org 37 3 9754683 9754683 + Missense_Mutation SNP G G T novel TCGA-2G-AAHL-01A-11D-A42Y-10 TCGA-2G-AAHL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b32e51f-53fa-4dbd-b41f-a2c7bf173d75 fee4df93-5a3c-4c18-92e3-8306991eaaa2 . . . . . . GACAGAGGTTGTG 39 3 0.08 68 0 0 9 0 0.00