Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MXRA8	54587	mdanderson.org	37	1	1290395	1290395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_032348	exon5	c.C616A	p.H206N	CCCAGTGCACCAC		40	3	0.08	47	0	0				5	0	0.00			
PTCHD2	57540	broad.mit.edu	37	1	11584023	11584023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	PTCHD2,NS,carcinoma,0,2	PTCHD2	NM_020780	exon11	c.G2387T	p.S796I	CCCACAGCCTGCA		150	9	0.06	198	1	0.0050505051		193	2	2	0	0.00			
C1orf228	339541	ucsc.edu	37	1	45191012	45191012	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	C1orf228	NM_001145636	exon12	c.G1260C	p.S420S	TGGCTCGCGCGAT		277	27	0.10	319	16	0.0501567398		15		37	7	0.19			
DAP3	7818	mdanderson.org	37	1	155679576	155679576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_033657	exon2	c.G6T	p.M2I	GATGATGCTGAAA		50	4	0.08	37	0	0				118	0	0.00			
CACNA1E	777	bcgsc.ca	37	1	181765833	181765833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	CACNA1E	NM_001205293	exon47	c.G6238A	p.G2080S	TCAGGGGGCAGGG		96	1	0.01	124	0	0		778		0	0				
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	201778383	201778383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_020443	exon21	c.C4299G	p.I1433M	CATCATCAAAGGG		406	51	0.13	400	0	0				42	10	0.24			
ACTN2	88	broad.mit.edu	37	1	236907951	236907951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	ACTN2,NS,carcinoma,0,1	ACTN2	NM_001103	exon12	c.G1281T	p.K427N	GCAGAAGGATTAC		150	5	0.03	170	0	0		191	1	2	0	0.00			
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	237789007	237789007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001035	exon40	c.A6069C	p.L2023F	TGATTTAACAATT		73	10	0.14	65	0	0				1	0	0.00			
TUBB8	347688	broad.mit.edu	37	10	93576	93576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	TUBB8	NM_177987	exon4	c.G756T	p.K252N	GGCCAGCTTCCGC		56	11	0.20	56	3	0.0535714286		62		34	4	0.12			
DDIT4	54541	mdanderson.org	37	10	74034708	74034708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_019058	exon3	c.G461T	p.G154V	AGCAGGGCAAGAG		48	3	0.06	55	0	0				269	0	0.00			
NKX1-2	390010	mdanderson.org	37	10	126136245	126136245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001146340	exon2	c.C686A	p.A229E	ACCTGCGCCGCGC		49	3	0.06	64	0	0				2	0	0.00			
CEND1	51286	mdanderson.org	37	11	788334	788334	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_016564	exon2	c.C243A	p.A81A	CGTGGGGGCTGGC		52	3	0.06	72	0	0				9	0	0.00			
TSPAN4	7106	mdanderson.org	37	11	864455	864455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	TSPAN4,NS,carcinoma,0,1	TSPAN4	NM_001025237	exon5	c.C274G	p.L92V	CTGCTGCTGGTGT		38	3	0.08	59	0	0		0	1	121	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		24	2	0.08	32	0	0		0	2	0	0				
MRVI1	10335	mdanderson.org	37	11	10651257	10651257	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001206880	exon5	c.C402T	p.D134D	CGCGGGGTCTGCA		44	3	0.07	51	0	0				7	0	0.00			
KCNJ11	3767	mdanderson.org	37	11	17409142	17409142	+	Missense_Mutation	SNP	C	C	T	rs80356618	bycluster	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_000525	exon1	c.G497A	p.C166Y	AAGATGCAGCCAA		34	3	0.09	49	0	0				3	0	0.00			
KCNA4	3739	bcgsc.ca	37	11	30032345	30032347	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	KCNA4,NS,carcinoma,-2,1	KCNA4	NM_002233	exon2	c.1879_1881del	p.627_627del	ACACTTCTCCTCC		139	0	0.00	169	0	0		158	1	0	0				
ACCSL	390110	bcgsc.ca	37	11	44074956	44074956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	ACCSL	NM_001031854	exon8	c.G949A	p.G317R	TCTTAGGGGAAAA		47	0	0.00	57	0	0		57		0	0				
EML3	256364	mdanderson.org	37	11	62374520	62374520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	EML3,NS,carcinoma,+2,1	EML3	NM_153265	exon12	c.G1414T	p.D472Y	GAATGTCTCCATC		47	3	0.06	69	0	0		2	1	73	0	0.00			
SUV420H1	51111	broad.mit.edu;mdanderson.org	37	11	67926224	67926224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	SUV420H1	NM_017635	exon11	c.A1589G	p.E530G	GAGCTCTCCCCCT		91	4	0.04	110	0	0		125		15	0	0.00			
MAML2	84441	broad.mit.edu;mdanderson.org	37	11	95825413	95825413	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	MAML2	NM_032427	exon2	c.G1782A	p.Q594Q	CTGCTGCTGTTGC		72	4	0.06	115	0	0		94		7	0	0.00			
CNTN5	53942	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	99944948	99944948	+	Missense_Mutation	SNP	T	T	C	rs200782641	bycluster	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	CNTN5	NM_001243270	exon12	c.T1502C	p.I501T	TTGTCATAGAGTG		442	68	0.15	503	0	0		324		0	0				
PDE3A	5139	broad.mit.edu;mdanderson.org	37	12	20522511	20522511	+	Missense_Mutation	SNP	C	C	A	rs200052001	bycluster	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	PDE3A,colon,NS,0,1	PDE3A	NM_000921	exon1	c.C293A	p.A98E	CGGCGGCGGAGGA		52	4	0.08	56	0	0		184	1	1	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	25380275	25380275	+	Missense_Mutation	SNP	T	T	A	rs17851045	bycluster	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	KRAS_ENST00000256078,colon,carcinoma,0,429	KRAS_ENST00000256078	NM_004985	exon3	c.A183T	p.Q61H	CTCCTCTTGACCT		165	32	0.19	126	0	0		0	429	51	13	0.25			
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	45173782	45173782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	NELL2_ENST00000437801,NS,carcinoma,-1,2	NELL2_ENST00000437801	NM_001145107	exon5	c.G509A	p.G170D	CGATGGCCACTAC		187	16	0.09	177	0	0		-1	2	28	7	0.25			
SLC4A8	9498	broad.mit.edu;mdanderson.org	37	12	51818775	51818775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	SLC4A8	NM_001039960	exon1	c.C4T	p.P2S	GCCATGCCGGCCG		74	4	0.05	79	0	0		292		3	0	0.00			
MYO1A	4640	bcgsc.ca	37	12	57432204	57432204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	MYO1A	NM_005379	exon17	c.C1752A	p.N584K	GATGTAGTTGGGG		68	0	0.00	65	0	0		122		2	0	0.00			
FRS2	10818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	69964184	69964184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001042555	exon7	c.T140C	p.L47S	TGATTTTATACAC		193	24	0.12	179	0	0				10	3	0.30			
E2F7	144455	bcgsc.ca	37	12	77449732	77449732	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	E2F7	NM_203394	exon3	c.T272G	p.I91S	GCACTAATGAGCA		170	0	0.00	151	0	0		201		3	0	0.00			
ANKRD13A	88455	mdanderson.org	37	12	110468480	110468480	+	Missense_Mutation	SNP	G	G	T	rs149017101	alternate_allele	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_033121	exon12	c.G1265T	p.R422L	ATGCACGGATTAC		50	3	0.06	49	0	0				42	0	0.00			
HECTD4	283450	broad.mit.edu;mdanderson.org	37	12	112717169	112717169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001109662	exon9	c.C1118T	p.P373L	TTTAGAGGCAGCC		52	3	0.06	67	0	0				1	1	1.00			
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	123741505	123741505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001194995	exon3	c.A428C	p.K143T	GGAAAAAAAGAGC		234	26	0.11	199	0	0				160	43	0.27			
N4BP2L2	10443	ucsc.edu	37	13	33092109	33092109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	N4BP2L2	NM_014887	exon6	c.A1582G	p.I528V	GAGCAATCTTCTT		45	2	0.04	73	0	0		90		107	31	0.29			
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	41894924	41894924	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001110798	exon4	c.G366T	p.L122L	CTCACTGTTGCAG		86	17	0.20	96	0	0				12	1	0.08			
.	0	broad.mit.edu	37	14	19850732	19850733	+	RNA	INS	-	-	A	rs369218058		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TAGACATAAAAGT		11	5	0.45	14	2	0.1428571429				0	0				
CPNE6	9362	mdanderson.org	37	14	24543965	24543965	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_006032	exon7	c.G633A	p.L211L	GTCCCTGCATTCC		67	5	0.07	79	1	0.0126582278				0	0				
PML	5371	mdanderson.org	37	15	74327689	74327689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_033239	exon8	c.G1887T	p.E629D	CGCTGAGCAGGCT		25	3	0.12	44	0	0				96	0	0.00			
ADAMTS17	170691	mdanderson.org	37	15	100636619	100636619	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_139057	exon15	c.C2079T	p.S693S	GTCCCCGCTGCAG		54	3	0.06	66	0	0				1	0	0.00			
AXIN1	8312	mdanderson.org	37	16	396604	396604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_003502	exon2	c.C422T	p.A141V	GCTCTCGCCAGCT		56	3	0.05	68	0	0				41	0	0.00			
CREBBP	1387	mdanderson.org	37	16	3900862	3900862	+	Silent	SNP	G	G	A	rs145925174		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	CREBBP,NS,carcinoma,0,1	CREBBP	NM_001079846	exon2	c.C234T	p.S78S	AGAGCCGCTGCCT		44	3	0.07	64	0	0	0	0	1	20	0	0.00			
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	11859005	11859005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014153	exon15	c.G1724C	p.C575S	TCAAAACATTTCT		119	20	0.17	112	0	0				15	4	0.27			
GPT2	84706	broad.mit.edu;mdanderson.org	37	16	46918656	46918656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	GPT2	NM_133443	exon2	c.G29C	p.R10P	TCCGGCGGGGCTG		30	4	0.13	40	0	0		40		4	1	0.25			
ZFPM1	161882	mdanderson.org	37	16	88601271	88601271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_153813	exon10	c.C2905T	p.P969S	CCGCTGCCCAACG		30	3	0.10	36	0	0				14	0	0.00			
MNT	4335	mdanderson.org	37	17	2291156	2291156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_020310	exon5	c.C995A	p.A332D	CCAGAGGCGGTGG		12	2	0.17	51	0	0				23	0	0.00			
CAMTA2	23125	mdanderson.org	37	17	4873299	4873299	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001171167	exon18	c.C3156A	p.G1052G	CATCTTGCCACTG		27	3	0.11	76	0	0				39	0	0.00			
NLRP1	22861	mdanderson.org	37	17	5436143	5436143	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001033053	exon11	c.C3307A	p.R1103R	CTCACCGGTACAA		54	3	0.06	81	0	0				23	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		177	7	0.04	230	18	0.0782608696				18	11	0.61	rescued with RNA-seq		
LRRC48	83450	mdanderson.org	37	17	17881062	17881062	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001130092	exon3	c.G150T	p.L50L	GCAGCTGGACTTT		45	4	0.09	64	0	0				1	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28960991	28960991	+	RNA	DEL	C	C	-	rs10561703	alternate_allele	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TTTTTTCTTTTTT		106	15	0.14	72	0	0				1	0	0.00			
BRIP1	83990	bcgsc.ca	37	17	59870967	59870967	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	BRIP1	NM_032043	exon10	c.C1464A	p.P488P	CAAAATGGGAAAA		96	0	0.00	58	0	0		237		20	0	0.00			
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	74623260	74623260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_018414	exon4	c.G1061A	p.S354N	GGGAGGCTGGCCA		57	7	0.12	69	0	0				99	28	0.28			
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	78321501	78321501	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001256071	exon29	c.C9366T	p.H3122H	CGTCCACCTCGGC		156	26	0.17	161	0	0				29	3	0.10			
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	78971136	78971136	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024591	exon6	c.A490T	p.T164S	GCAATCACTCAGG		90	5	0.06	127	0	0				19	2	0.11			
LOC644669	0	broad.mit.edu	37	18	15322956	15322962	+	RNA	DEL	TTTATAC	TTTATAC	-	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	TTTATAC	TTTATAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TAAAAATTTATAC		7	3	0.43	10	0	0				0	0				
TSHZ1	10194	mdanderson.org	37	18	72999035	72999035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005786	exon2	c.C1538T	p.T513I	AGAATACCGTCTC		44	3	0.07	54	0	0				1	0	0.00			
DNMT1	1786	bcgsc.ca	37	19	10254526	10254526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	DNMT1	NM_001130823	exon29	c.G3032A	p.R1011Q	TTGATCCGGCCAA		217	0	0.00	277	0	0		148		88	0	0.00			
ANKLE1	126549	broad.mit.edu	37	19	17397498	17397501	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs35771129	alternate_allele	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	ANKLE1	.	.	.	.	TGTGTGTGTTTGT		14	9	0.64	18	0	0		27		2	0	0.00			
UBE2S	27338	mdanderson.org	37	19	55912870	55912870	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014501	exon4	c.C603A	p.G201G	GCGCTCGCCAGCA		25	2	0.08	38	0	0				453	0	0.00			
MYT1L	23040	mdanderson.org	37	2	1946773	1946773	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015025	exon9	c.G486A	p.E162E	CTCTTCCTCCTCC		52	3	0.06	84	0	0				0	0				
EHBP1	23301	mdanderson.org	37	2	63175395	63175395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015252	exon14	c.G1519T	p.A507S	TTGAAGGCATACG		47	3	0.06	46	0	0				25	0	0.00			
.	0	bcgsc.ca	37	2	241922506	241922506	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	CCTACAGGGAAGA		55	0	0.00	61	0	0				0	0				
HDLBP	3069	bcgsc.ca	37	2	242189261	242189261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	HDLBP	NM_005336	exon12	c.C1507T	p.R503C	CCATGCGAGATGC		41	0	0.00	44	0	0		118		323	0	0.00			
PROCR	10544	mdanderson.org	37	20	33762717	33762717	+	Missense_Mutation	SNP	G	G	T	rs139714129		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_006404	exon2	c.G283T	p.G95C	TTCCACGGCCTCG		48	3	0.06	49	0	0	0			37	0	0.00			
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	60886012	60886012	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005560	exon74	c.G10227T	p.G3409G	CCGAGTCCCGAGG		53	12	0.23	74	0	0				117	32	0.27			
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	21	40582800	40582800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_018963	exon35	c.A3956G	p.K1319R	TGTTTCTTCCAGT		127	9	0.07	145	0	0				25	6	0.24			
COL6A1	1291	mdanderson.org	37	21	47423322	47423322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001848	exon35	c.G2482A	p.A828T	TCCCCGGCTGACA		28	3	0.11	34	0	0				248	0	0.00			
ZDHHC8P1	150244	hgsc.bcm.edu	37	22	23742934	23742934	+	RNA	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	CATCCATGGCTGA		20	4	0.20	14	0	0				0	0				
ZNF70	7621	broad.mit.edu	37	22	24086211	24086211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	ZNF70	NM_021916	exon2	c.T1117C	p.F373L	GGCAAAAGGCCTT		120	4	0.03	121	0	0		49		2	0	0.00			
C22orf26	55267	broad.mit.edu	37	22	46449890	46449890	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	C22orf26	NM_018280	exon1	c.84delC	p.P28fs	GGGGTTGGGGGGG		6	3	0.50	11	0	0		1		0	0				
TUBGCP6	85378	mdanderson.org	37	22	50660245	50660245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_020461	exon16	c.C2543A	p.A848E	TGCTCTGCAGACC		31	3	0.10	33	0	0				17	0	0.00			
LAMB2	3913	mdanderson.org	37	3	49168584	49168584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_002292	exon7	c.C714A	p.N238K	CAACAGGTCTGAG		44	3	0.07	72	0	0				23	0	0.00			
USP4	7375	mdanderson.org	37	3	49377394	49377394	+	Missense_Mutation	SNP	G	G	T	rs199503897	by1000genomes;alternate_allele	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_003363	exon1	c.C64A	p.P22T	TTAAGGGTCCAAG		33	3	0.09	42	0	0				24	0	0.00			
MST1	4485	mdanderson.org	37	3	49724400	49724400	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_020998	exon6	c.G708A	p.Q236Q	GGGGTGCTGGTGC		41	3	0.07	37	0	0				4	0	0.00			
GLYCTK	132158	mdanderson.org	37	3	52325061	52325061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_145262	exon3	c.G463A	p.A155T	CGGGCTGCACTGG		22	3	0.14	42	0	0				32	0	0.00			
BAP1	8314	mdanderson.org	37	3	52436392	52436392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	BAP1,NS,carcinoma,-1,1	BAP1	NM_004656	exon17	c.G2102A	p.R701H	CCTTGGCGCCGCC		25	3	0.12	41	0	0		-1	1	52	0	0.00			
PLXND1	23129	bcgsc.ca	37	3	129324383	129324383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	PLXND1	NM_015103	exon1	c.G1100T	p.R367L	AAGAGCCGCTCCC		13	0	0.00	25	0	0		149		2	0	0.00			
PDS5A	23244	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	39839559	39839559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	PDS5A	NM_001100399	exon32	c.G3927C	p.L1309F	TGCTTCCAAACCC		133	16	0.12	139	0	0		114		70	7	0.10			
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	86491797	86491797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001025616	exon2	c.A103G	p.T35A	GTCAAGACTTGGC		118	16	0.14	141	0	0				2	0	0.00			
ANKRD50	57182	bcgsc.ca	37	4	125592523	125592523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	ANKRD50	NM_020337	exon4	c.G1909A	p.V637M	AATCCACTTTTAC		100	0	0.00	121	0	0		136		4	0	0.00			
INPP4B	8821	mdanderson.org	37	4	143326460	143326460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_003866	exon7	c.G154T	p.A52S	CAGGAGCCACGAG		44	3	0.07	68	0	0				2	0	0.00			
PCDHA10	56139	mdanderson.org	37	5	140237643	140237643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_031859	exon1	c.G2010T	p.E670D	TGTGGAGGGCAGC		54	3	0.06	45	0	0				0	0				
PCDHB2	56133	hgsc.bcm.edu	37	5	140476082	140476082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	PCDHB2,trunk,malignant_melanoma,0,1	PCDHB2	NM_018936	exon1	c.G1708A	p.G570S	CAGAACGGCTCCG		20	3	0.15	42	0	0		0	1	0	0				
PCDHB16	57717	hgsc.bcm.edu	37	5	140563835	140563836	+	Missense_Mutation	DNP	CG	CG	TA	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	PCDHB16,NS,carcinoma,0,1	PCDHB16	NM_020957	exon1	c.G1702A	p.G568S	GCAGAACGGCTCC		8	4	0.50	8	0	0		0	1	0	0				
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	176636782	176636782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_022455	exon5	c.C1382G	p.T461R	ACTGCACAAATGA		144	29	0.20	199	0	0				9	7	0.78			
RNF5	6048	mdanderson.org	37	6	32148102	32148102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_006913	exon6	c.G542T	p.X181L	GTATTTGAGCTAT		18	2	0.11	24	0	0				308	0	0.00			
RNF8	9025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	37358600	37358600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_183078	exon7	c.T1319A	p.F440Y	GAGGATTCTCTCT		73	11	0.15	88	0	0				189	51	0.27			
FRS3	10817	mdanderson.org	37	6	41743177	41743177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_006653	exon4	c.G233T	p.R78L	CATCGGCGGCCAC		48	3	0.06	55	0	0				33	0	0.00			
POU3F2	5454	mdanderson.org	37	6	99283412	99283412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005604	exon1	c.G663T	p.E221D	CGACGAGCCACAC		17	2	0.12	21	0	0				0	0				
.	0	broad.mit.edu	37	7	38284884	38284885	+	RNA	INS	-	-	GG	rs200076851	by1000genomes	TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TTGTCAAGGTGTG		9	5	0.56	13	0	0				0	0				
MUC17	140453	bcgsc.ca	37	7	100681474	100681474	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	MUC17	NM_001040105	exon3	c.A6777G	p.S2259S	CACTTCATCTCCT		86	3	0.03	96	1	0.0104166667		804		0	0				
COL26A1	136227	broad.mit.edu	37	7	101063621	101063624	+	RNA	DEL	GACA	GACA	-	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	GACA	GACA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	GTGTTTGACAGAC		6	2	0.33	4	0	0				0	0				
COG5	10466	bcgsc.ca	37	7	106888937	106888937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	COG5	NM_006348	exon17	c.A1850G	p.H617R	AGAGCATGAATAG		43	0	0.00	64	0	0		78		28	0	0.00			
PTGR1	22949	bcgsc.ca	37	9	114356535	114356535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	PTGR1	NM_001146108	exon3	c.A119C	p.E40A	AAAGCTTCAAGCA		104	0	0.00	132	0	0		23		68	0	0.00			
ATP6V1G1	9550	mdanderson.org	37	9	117359967	117359967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_004888	exon3	c.G301T	p.A101S	CTCTTGGCTTTTG		48	3	0.06	49	0	0				819	2	0.00			
GPR144	347088	mdanderson.org	37	9	127215853	127215853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001161808	exon4	c.T877C	p.C293R	CGGGCCTGCGCGC		13	3	0.23	27	0	0				0	0				
LAMC3	10319	broad.mit.edu	37	9	133928053	133928053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	LAMC3	NM_006059	exon10	c.G1806T	p.E602D	CAGGGAGGTAGAG		63	3	0.05	74	0	0		167		5	0	0.00			
NUP214	8021	broad.mit.edu	37	9	134073760	134073760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	NUP214,NS,carcinoma,-2,1	NUP214	NM_005085	exon29	c.G4879T	p.G1627C	GCTCCCGGCCCAT		106	4	0.04	116	0	0		166	1	83	0	0.00			
NELFB	25920	mdanderson.org	37	9	140157489	140157489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015456	exon5	c.G598T	p.V200L	CTGCAGGTGGTGC		47	3	0.06	67	0	0				180	0	0.00			
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	21519642	21519642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001168647	exon8	c.C746T	p.P249L	AGTCACCTGCAGA		255	51	0.20	206	0	0				0	0				
AMOT	154796	mdanderson.org	37	X	112021840	112021840	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001113490	exon11	c.C3210A	p.I1070I	TCCCAGGATCTGA		51	3	0.06	59	0	0				0	0				
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	117680026	117680026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_144658	exon6	c.C505G	p.Q169E	ATAAAACAAGGCT		41	9	0.22	73	0	0				16	5	0.31			
GABRQ	55879	mdanderson.org	37	X	151808849	151808849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_018558	exon2	c.G160A	p.A54T	AATTGTGCAAATG		40	3	0.08	46	0	0				6	0	0.00			
CSAG4	100130935	hgsc.bcm.edu	37	X	151896817	151896817	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAHP-05A-11D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e5dab1ce-fa7a-4dda-8d9a-fdc3a104a2e1	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	GCCTATCCACATT		227	66	0.29	226	0	0				0	0