Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MST1L 11223 bcgsc.ca 37 1 17084768 17084768 + Missense_Mutation SNP G G C rs2092129 bycluster;byfrequency TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . GACCCCGCGCAGA 197 12 0.06 181 2 0.0110497238 2 0 0.00 XKR8 55113 broad.mit.edu 37 1 28293362 28293362 + Missense_Mutation SNP G G A rs147277716 bycluster TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . XKR8 NM_018053 exon3 c.G839A p.R280H AGGGCCGCACCCG 72 3 0.04 88 1 0.0113636364 15 34 0 0.00 CELF3 11189 broad.mit.edu 37 1 151678746 151678746 + Silent SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . CELF3 NM_007185 exon10 c.G1080A p.Q360Q CTGCTGCTGTTGA 37 5 0.14 22 0 0 49 1 0 0.00 C1orf61 10485 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156384450 156384450 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_006365 exon4 c.G167A p.R56Q ACCGCCCGGGAGC 78 20 0.26 60 0 0 1 1 1.00 . 0 bcgsc.ca 37 1 192215884 192215884 + RNA SNP C C G novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . TACATCCTTAATT 280 46 0.16 299 0 0 8 0 0.00 . 0 broad.mit.edu 37 1 204363980 204363981 + RNA DEL AA AA - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 AA AA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . TTTTTCAAAAAAA 6 2 0.33 4 0 0 0 0 DPCD 25911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 103361002 103361002 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_015448 exon4 c.C313T p.R105W CAGTGGCGGATTC 80 18 0.23 69 0 0 30 11 0.37 MUC2 4583 broad.mit.edu 37 11 1093292 1093292 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . MUC2 NM_002457 exon30 c.C5111T p.T1704I CCACCACCACTAC 18 3 0.17 23 0 0 614 0 0 SLC43A3 29015 bcgsc.ca 37 11 57193118 57193118 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . SLC43A3 NM_014096 exon4 c.C210A p.F70L GAGTGAGAACCTC 84 5 0.06 70 0 0 54 5 0 0.00 IQSEC3 440073 hgsc.bcm.edu 37 12 274692 274692 + Missense_Mutation SNP G G C novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_001170738 exon10 c.G2802C p.E934D CTTTGAGAACGAG 253 11 0.04 87 0 0 4 0 0.00 TAS2R43 259289 hgsc.bcm.edu 37 12 11244878 11244878 + RNA SNP A A G rs369719862 TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . TCCGGAATTGGTT 93 6 0.06 18 0 0 0 0 FAM186A 121006 broad.mit.edu 37 12 50756999 50756999 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . FAM186A NM_001145475 exon2 c.C341A p.A114D TAAGTAGCCATTT 108 4 0.04 78 0 0 181 0 0 ITGA7 3679 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56092570 56092570 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 ITGA7_ENST00000553804,colon,carcinoma,0,2 ITGA7_ENST00000553804 NM_001144996 exon6 c.G934A p.E312K TAACCTCGGGCAC 100 25 0.25 92 0 0 0 2 9 2 0.22 PABPC3 5042 bcgsc.ca 37 13 25671122 25671122 + Silent SNP C C T rs79072440 bycluster TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . PABPC3 NM_030979 exon1 c.C786T p.Y262Y AATTTACGTTGGT 103 8 0.08 104 1 0.0096153846 129 3 3 1.00 POTEG 404785 broad.mit.edu 37 14 19553528 19553528 + Missense_Mutation SNP A A G novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . POTEG NM_001005356 exon1 c.A112G p.S38G AGGGGGAGCGGCA 1024 11 0.01 988 2 0.0020242915 118 0 0 . 0 broad.mit.edu 37 14 19890158 19890160 + RNA DEL GCC GCC - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 GCC GCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . GCAGCGGCCGCCA 10 8 0.80 4 0 0 0 0 UNC79 57578 broad.mit.edu 37 14 94103583 94103583 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . UNC79 NM_020818 exon33 c.G5324T p.R1775L GGAAACGCCAGTG 77 4 0.05 80 0 0 366 0 0 . 283685 bcgsc.ca 37 15 23685728 23685728 + Missense_Mutation SNP C C G rs376316505 bycluster TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . CCGCATCCTCTCC 15 5 0.33 17 0 0 0 0 MAGEL2 54551 bcgsc.ca 37 15 23889164 23889164 + Silent SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . MAGEL2 NM_019066 exon1 c.C3726A p.P1242P GCTGGTGGGGCCG 55 5 0.09 77 0 0 108 13 0 0.00 WASH3P 374666 hgsc.bcm.edu 37 15 102515335 102515335 + RNA SNP C C G rs201001946 TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 WASH3P,NS,carcinoma,0,4 WASH3P . . . . CGAAAGCTGGAGA 41 3 0.07 47 0 0 0 4 169 16 0.09 UBALD1 124402 broad.mit.edu 37 16 4659850 4659850 + Silent SNP T T G novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_145253 exon3 c.A318C p.S106S CGGGGGTGACGTG 34 18 0.53 33 12 0.3636363636 27 12 0.44 RRN3P3 0 broad.mit.edu 37 16 22448752 22448753 + RNA INS - - GCGGCGGCG novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . CGGCTGAGCGGCG 8 3 0.38 9 0 0 1 0 0.00 PRPF8 10594 hgsc.bcm.edu 37 17 1579989 1579989 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_006445 exon16 c.C2198A p.T733K ATGGGCGTCGGCA 57 4 0.07 72 0 0 20 0 0.00 KRT32 3882 hgsc.bcm.edu;bcgsc.ca 37 17 39619137 39619137 + Missense_Mutation SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_002278 exon6 c.C1162T p.R388W CCAGCCGGGCCCG 96 5 0.05 78 0 0 0 0 ACE 1636 bcgsc.ca 37 17 61557201 61557201 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 ACE,NS,carcinoma,-1,1 ACE NM_000789 exon4 c.G583T p.A195S CACAACGCTGCGG 55 4 0.07 40 0 0 187 1 6 0 0.00 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 21427447 21427480 + Frame_Shift_Del DEL CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_198129 exon32 c.3950_3983del p.1317_1328del TCGGCGCCTTTGT 26 7 0.27 23 0 0 0 0 RYR1 6261 hgsc.bcm.edu 37 19 38986924 38986924 + Silent SNP G G T rs370261565 alternate_allele TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 RYR1,NS,carcinoma,0,1 RYR1 NM_001042723 exon40 c.G6618T p.T2206T CGAGACGGTCATG 42 2 0.05 33 0 0 0 1 0 0 SNRNP200 23020 hgsc.bcm.edu;bcgsc.ca 37 2 96943998 96943998 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_014014 exon39 c.C5587A p.H1863N CTTCATGGTGCCG 93 6 0.06 79 0 0 261 0 0.00 ANKRD36B 57730 broad.mit.edu 37 2 98192550 98192550 + RNA DEL T T - rs370632971 TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . TGACTATTAAAAA 13 4 0.31 6 0 0 0 0 POLR1B 84172 broad.mit.edu 37 2 113333030 113333030 + Silent SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 POLR1B,NS,carcinoma,0,1 POLR1B NM_019014 exon15 c.G3132T p.A1044A GGATGCGCTTTTA 169 4 0.02 155 0 0 95 1 34 0 0.00 GAL3ST2 64090 hgsc.bcm.edu;broad.mit.edu 37 2 242742846 242742846 + Nonsense_Mutation SNP C C G novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_022134 exon4 c.C462G p.Y154X CTACTACAAAACC 181 39 0.22 131 0 0 0 0 ELMO2 63916 hgsc.bcm.edu 37 20 45014804 45014804 + Silent SNP G G A rs201990540 bycluster;by1000genomes TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 ELMO2,NS,carcinoma,-1,1 ELMO2 NM_182764 exon8 c.C636T p.A212A TTCCTCGGCTATC 64 5 0.08 43 1 0.023255814 0.002 -1 1 4 0 0.00 . 0 broad.mit.edu 37 22 18846121 18846121 + RNA SNP C C T rs4302302 bycluster;byfrequency TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . CACTGGCGCACGA 199 13 0.07 106 1 0.0094339623 1 0 0.00 CELSR1 9620 ucsc.edu 37 22 46768831 46768831 + Missense_Mutation SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . CELSR1 NM_014246 exon25 c.C7708T p.P2570S GCATGGGCCCCGT 28 4 0.14 39 0 0 242 1 0 0.00 POGLUT1 56983 broad.mit.edu 37 3 119204180 119204180 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . POGLUT1 NM_152305 exon6 c.C584T p.A195V GGTCAGCAGCACA 262 6 0.02 289 1 0.0034602076 32 8 0 0.00 NUP210P1 0 broad.mit.edu 37 3 126385091 126385091 + RNA DEL C C - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . CTGCTGCTTGGAG 7 3 0.43 10 0 0 0 0 MSL2 55167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 135871188 135871188 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_018133 exon2 c.G535A p.E179K TGCTTTCAGACAT 132 28 0.21 126 0 0 14 5 0.36 ZBBX 79740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 167034805 167034805 + Silent SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_024687 exon14 c.C1182T p.V394V CAGTTCGACTATC 142 22 0.15 96 0 0 0 0 SPATA18 132671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 52943177 52943177 + Missense_Mutation SNP G G A rs193921037 bycluster;by1000genomes TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 SPATA18_ENST00000295213,NS,adenoma,0,2 SPATA18_ENST00000295213 NM_145263 exon7 c.G991A p.V331I GAGACCGTTCAGC 215 26 0.12 174 0 0 0 2 1 1 1.00 TMPRSS11E 28983 broad.mit.edu 37 4 69343244 69343244 + Missense_Mutation SNP T T C novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . TMPRSS11E NM_014058 exon8 c.T865C p.Y289H GTTCCCTACACAA 369 5 0.01 421 0 0 40 0 0 NEIL3 55247 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 178272589 178272589 + Missense_Mutation SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . NEIL3 NM_018248 exon7 c.G925A p.V309I GATCATGTTATGG 67 41 0.61 72 1 0.0138888889 89 4 3 0.75 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187557879 187557879 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_005245 exon5 c.G3832A p.D1278N CCTTGTCGGTGGC 164 31 0.19 115 0 0 0 0 PRLR 5618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 35065642 35065642 + Missense_Mutation SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 PRLR,NS,carcinoma,-1,1 PRLR NM_000949 exon10 c.C1418T p.A473V TGGGTTGCCTTTC 136 48 0.35 157 0 0 -1 1 2 0 0.00 PAIP1 10605 hgsc.bcm.edu 37 5 43539098 43539098 + Silent SNP T T C novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_006451 exon5 c.A774G p.K258K ATCCCCTTTTGCA 61 4 0.07 54 0 0 45 0 0.00 CMAHP 0 broad.mit.edu 37 6 25091943 25091945 + RNA DEL ATA ATA - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 ATA ATA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . CMAHP . . . . TTAATTATAATTA 9 2 0.22 3 0 0 6 0 0 MYO6 4646 broad.mit.edu 37 6 76591494 76591494 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 MYO6,NS,carcinoma,+1,1 MYO6 NM_004999 exon23 c.G2375T p.R792L GCAGTCGCTGGAA 91 3 0.03 100 1 0.01 124 1 5 0 0.00 MOXD1 26002 broad.mit.edu;bcgsc.ca 37 6 132643950 132643950 + Missense_Mutation SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . MOXD1 NM_015529 exon8 c.C1173A p.H391Q AGCCAGGTGAGCA 142 7 0.05 122 0 0 136 7 0 0.00 RAPGEF5 9771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 22348122 22348122 + Silent SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_012294 exon5 c.C57T p.D19D ATGCTGGTCCACT 90 9 0.10 55 0 0 0 0 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . CCGGGGTCCTTGA 134 4 0.03 80 0 0 0 0 GTF2IRD2P1 0 broad.mit.edu 37 7 72669802 72669802 + RNA DEL A A - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . ATCTTGAAAAAAA 550 10 0.02 451 5 0.0110864745 0 0 . 0 broad.mit.edu 37 7 75730186 75730186 + RNA DEL T T - novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . TTATTGTTTTAAT 6 2 0.33 4 0 0 0 0 FLNC 2318 broad.mit.edu 37 7 128478446 128478446 + Silent SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . FLNC NM_001127487 exon7 c.G1173T p.V391V CAATGTGGCCAAC 106 4 0.04 82 0 0 339 11 0 0.00 CALB1 793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 91078131 91078131 + Silent SNP G G A novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . NM_004929 exon6 c.C445T p.L149L CCATTAGGTCTGT 120 16 0.13 114 0 0 74 18 0.24 GRHL2 79977 broad.mit.edu 37 8 102585952 102585952 + Missense_Mutation SNP A A G novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . GRHL2 NM_024915 exon6 c.A791G p.E264G AGGGGGAGGGCCC 178 4 0.02 124 1 0.0080645161 68 2 0 0.00 ND4 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 12077 12077 + Missense_Mutation SNP C C T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . ENST00000361381 exon1 c.C1318T p.H440Y TTCATACACCTAT 33 25 0.76 20 0 0 0 0 CYTB 0 bcgsc.ca 37 MT 15639 15639 + Missense_Mutation SNP T T C novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . ENST00000361789 exon1 c.T893C p.I298T TATCCATCCTCAT 38 35 0.92 18 1 0.0555555556 0 0 RBM3 5935 ucsc.edu 37 X 48434994 48434994 + Splice_Site SNP T T G novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . RBM3 NM_006743 exon5 c.413+2T>G . GGCAGGTGGGTAG 54 15 0.28 39 7 0.1794871795 20 2 0 0.00 . 648283 bcgsc.ca 37 X 83004722 83004722 + RNA SNP G G T novel TCGA-2G-AAKD-01A-31D-A42Y-10 TCGA-2G-AAKD-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 26d84898-bffe-4bf2-98b3-e2745b224de3 32a4f026-dca8-4f8c-81e8-2d7e8ea2d166 . . . . . . CAAATTGTGCATC 86 36 0.42 58 0 0 5 0 0.00