Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AGRN 375790 hgsc.bcm.edu 37 1 977425 977425 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf AGRN,NS,carcinoma,0,1 AGRN NM_198576 exon7 c.G1267A p.G423R TGTGACGGGGCCT 37 2 0.05 23 0 0 0 1 20 0 0.00 PRAMEF4 400735 ucsc.edu 37 1 12939904 12939904 + Missense_Mutation SNP A A C rs77146569 byfrequency TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . PRAMEF4 NM_001009611 exon4 c.T898G p.F300V TGAGGAACTTTAA 50 13 0.26 19 5 0.2631578947 62 0 0 . 0 broad.mit.edu 37 1 16959834 16959834 + RNA SNP G G T rs201123694 bycluster;byfrequency TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf Q6ZWC0_HUMAN,NS,carcinoma,0,1 . . . . . GCTGCAGCGGGTC 57 5 0.09 41 1 0.0243902439 1 29 10 0.34 ZMYM4 9202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 35836147 35836147 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_005095 exon7 c.C1100T p.T367I GCTCCACACTGTG 85 6 0.07 97 0 0 57 7 0.12 LOC729930 0 bcgsc.ca 37 1 89755966 89755966 + RNA SNP C C A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GGACTTCTTTGAT 29 0 0.00 33 0 0 0 0 DPYD-AS1 100873932 hgsc.bcm.edu 37 1 97700346 97700346 + RNA SNP T T A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTCACATAACTTA 66 13 0.20 91 0 0 0 0 NRAS 4893 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 115256529 115256529 + Missense_Mutation SNP T T C rs11554290 bycluster;byfrequency;byhapmap TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf NRAS,NS,haematopoietic_neoplasm,-1,2068 NRAS NM_002524 exon3 c.A182G p.Q61R TCTTCTTGTCCAG 183 14 0.08 103 0 0 -1 2068 82 26 0.32 SEC22B 9554 broad.mit.edu 37 1 145112049 145112050 + RNA INS - - GTG rs147351886 bycluster TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . CTAAAGTGTGGTG 8 4 0.50 6 0 0 2 0 0.00 ARMC3 219681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 23290962 23290962 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_173081 exon12 c.G1540A p.A514T CTGACGGCCAATG 117 14 0.12 113 0 0 1 0 0.00 LGI1 9211 mdanderson.org 37 10 95549857 95549857 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_005097 exon5 c.A433G p.S145G TCCAGGAGCCTTG 37 10 0.27 39 5 0.1282051282 0 0 SMC3 9126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 112361739 112361739 + Missense_Mutation SNP G G C novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_005445 exon25 c.G2908C p.E970Q AAACTTGAGCAGT 170 13 0.08 140 0 0 579 158 0.27 NLRP6 171389 mdanderson.org 37 11 281471 281471 + Silent SNP G G A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_138329 exon4 c.G1737A p.V579V GTGGGTGCAGGGA 52 3 0.06 51 0 0 5 0 0.00 MUC2 4583 mdanderson.org 37 11 1093295 1093296 + Missense_Mutation DNP CT CT TC novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 CT CT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf MUC2_ENST00000441003,rectum,carcinoma,+1,2 MUC2_ENST00000441003 NM_002457 exon30 c.T5115C p.T1705I CCACCACTACGGT 40 8 0.20 29 4 0.1379310345 1 2 0 0 FOLH1 2346 bcgsc.ca 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . FOLH1 NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 173 12 0.07 182 2 0.010989011 141 4 0 0.00 OR8U1 219417 broad.mit.edu 37 11 56143593 56143593 + Missense_Mutation SNP G G T rs201539171 bycluster;by1000genomes TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf OR8U1,colon,carcinoma,+1,1 OR8U1 NM_001005204 exon1 c.G494T p.R165L CCTTCCGCCTCTC 142 4 0.03 144 0 0 59 1 0 0 MMP8 4317 broad.mit.edu 37 11 102589148 102589148 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . MMP8 NM_002424 exon5 c.T781C p.Y261H TACCATAGATGGC 121 3 0.02 116 0 0 68 0 0 NCAM1 4684 bcgsc.ca 37 11 113076296 113076296 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . NCAM1 NM_001242608 exon5 c.A398G p.E133G AGGGGGAAGATGC 117 0 0.00 137 0 0 372 5 0 0.00 KDM5A 5927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 459828 459828 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf KDM5A_ENST00000399788,NS,carcinoma,+1,4 KDM5A_ENST00000399788 NM_001042603 exon10 c.C1267T p.P423S TCACCGGAAATCC 246 14 0.06 183 0 0 1 4 88 14 0.16 DENND5B 160518 broad.mit.edu;mdanderson.org 37 12 31632777 31632777 + Nonsense_Mutation SNP G G C novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . DENND5B NM_144973 exon3 c.C650G p.S217X TGCTGTGAGGTAA 97 5 0.05 69 0 0 114 52 0 0.00 LLPH 84298 broad.mit.edu 37 12 66517700 66517700 + Missense_Mutation SNP T T C novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf LLPH,NS,carcinoma,0,1 LLPH NM_032338 exon3 c.A310G p.R104G TCAGCCTTTTTCT 166 3 0.02 153 0 0 25 1 128 0 0.00 PTPRB 0 broad.mit.edu;mdanderson.org 37 12 70970172 70970172 + Missense_Mutation SNP T T A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . PTPRB NM_001109754 exon11 c.A2832T p.Q944H CCGCTCTTGGCTG 113 7 0.06 108 0 0 676 5 0 0.00 HCAR3 8843 broad.mit.edu 37 12 123201030 123201030 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . HCAR3 NM_006018 exon1 c.C255A p.D85E ATAGTAGTCCATC 93 4 0.04 79 0 0 49 20 0 0.00 CCDC169 54937 broad.mit.edu 37 13 36822786 36822786 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CCDC169 NM_001144981 exon7 c.C502A p.Q168K CCACCTGTTGCCT 74 3 0.04 92 0 0 20 0 0 . 0 broad.mit.edu 37 14 19857036 19857036 + RNA SNP A A G rs374719458 TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . ATAATAAAGTTCA 34 5 0.15 48 1 0.0208333333 1 0 0.00 KIAA0391 9692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 35593060 35593060 + Silent SNP C C G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_014672 exon2 c.C609G p.A203A GAAAGCCAGATAT 138 12 0.09 114 0 0 54 13 0.24 EPB42 2038 hgsc.bcm.edu 37 15 43500484 43500484 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_000119 exon8 c.C1109A p.P370H CCCTGGGGCAAGG 88 4 0.05 96 0 0 0 0 CYP19A1 0 broad.mit.edu;mdanderson.org 37 15 51504564 51504564 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CYP19A1 NM_031226 exon10 c.T1216C p.F406L GGAAAAACTCGAG 169 17 0.10 138 1 0.0072463768 75 1 0 0.00 CGNL1 84952 broad.mit.edu 37 15 57731196 57731196 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CGNL1 NM_001252335 exon3 c.G999T p.R333S CAGAAGGTATATT 155 4 0.03 121 0 0 125 9 0 0.00 CYP1A1 1543 hgsc.bcm.edu 37 15 75012969 75012969 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_000499 exon7 c.T1400C p.V467A AGAAAGACCTCCC 91 4 0.04 60 0 0 0 0 MEX3B 84206 mdanderson.org 37 15 82336271 82336271 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_032246 exon2 c.C940A p.R314S CCAGGCGCTGGGT 15 2 0.13 16 0 0 48 0 0.00 IGFALS 3483 mdanderson.org 37 16 1842006 1842006 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001146006 exon2 c.C527A p.A176E CCGAGTGCCAGGC 31 3 0.10 20 0 0 1 0 0.00 ABCC6P1 0 broad.mit.edu 37 16 18597595 18597596 + RNA INS - - A rs199955375 TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . CCGTATCAAAAAA 9 3 0.33 7 1 0.1428571429 0 0 XPO6 23214 hgsc.bcm.edu 37 16 28167671 28167671 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf XPO6,NS,carcinoma,-1,1 XPO6 NM_015171 exon7 c.T821C p.I274T TGGAAGATGGTGG 94 4 0.04 106 0 0 -1 1 202 0 0.00 MAP2K3 5606 bcgsc.ca 37 17 21188136 21188136 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . MAP2K3 . . . . CCTGGCCTGGGCC 32 0 0.00 77 0 0 135 35 0 0.00 ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 29162012 29162012 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf ATAD5,NS,carcinoma,-2,1 ATAD5 NM_024857 exon2 c.A913G p.I305V GGTTATATAAGTG 252 11 0.04 226 0 0 -2 1 11 3 0.27 KRTAP4-11 653240 hgsc.bcm.edu 37 17 39274343 39274343 + Silent SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf KRTAP4-11,NS,malignant_melanoma,0,2 KRTAP4-11 NM_033059 exon1 c.T225C p.C75C GGGGCGACAGCAG 47 2 0.04 41 2 0.0487804878 0 2 0 0 FAM104A 84923 broad.mit.edu;mdanderson.org 37 17 71228444 71228444 + Translation_Start_Site SNP A A C novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf FAM104A,NS,carcinoma,+1,1 FAM104A NM_032837 exon1 c.T2G p.M1R CCCCCCATGTCGC 41 5 0.12 34 0 0 15 1 16 4 0.25 . 0 bcgsc.ca 37 18 58330687 58330687 + RNA SNP C C A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . CTCAACCATCTGC 22 0 0.00 35 0 0 0 0 PDE4A 5141 mdanderson.org 37 19 10572668 10572668 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf PDE4A,NS,carcinoma,+1,1 PDE4A NM_001111307 exon13 c.G1736A p.R579H CCGACCGCATCCA 41 4 0.10 41 0 0 1 1 59 0 0.00 RAD23A 5886 mdanderson.org 37 19 13058704 13058704 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001270363 exon2 c.G115T p.D39Y GGTCGTGATGCCT 49 3 0.06 46 0 0 460 0 0.00 ELL 8178 broad.mit.edu 37 19 18572422 18572422 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . ELL NM_006532 exon5 c.C710A p.A237E TTGTCCGCCTGCG 56 3 0.05 35 0 0 52 108 0 0.00 LOC100996307 0 broad.mit.edu 37 19 43057701 43057701 + RNA DEL A A - rs35431333 bycluster TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TCCTGCAAAAAAA 7 2 0.29 5 0 0 0 0 TPRX1 284355 broad.mit.edu 37 19 48305622 48305622 + Missense_Mutation SNP A A G rs201007421 TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf TPRX1,caecum,carcinoma,0,2 TPRX1 NM_198479 exon2 c.T646C p.S216P GGCCTGAGATTGG 51 5 0.10 49 2 0.0408163265 46 2 0 0 UBE2M 9040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 59067702 59067702 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_003969 exon5 c.G392A p.G131D TGCAGGCCATAAA 118 11 0.09 115 0 0 349 45 0.13 ANKRD36BP2 0 broad.mit.edu 37 2 89082294 89082295 + RNA INS - - TT rs368332037 bycluster TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . AGTCTCATATGTT 13 6 0.46 9 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89082296 89082297 + RNA INS - - TC rs370959214 TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TCTCATATGTTGA 13 5 0.38 9 0 0 0 0 ANKRD36B 57730 broad.mit.edu 37 2 98192550 98192550 + RNA DEL T T - rs370632971 TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TGACTATTAAAAA 6 3 0.50 6 0 0 0 0 WASH2P 0 broad.mit.edu 37 2 114355774 114355784 + RNA DEL GAGGTGGCTGG GAGGTGGCTGG - novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 GAGGTGGCTGG GAGGTGGCTGG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTCCCCGAGGTGG 10 3 0.30 4 0 0 4 0 0.00 MYO18B 84700 mdanderson.org 37 22 26165374 26165374 + Silent SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_032608 exon4 c.C1491T p.G497G AGGAGGCCAGAGC 71 4 0.06 52 0 0 5 0 0.00 LMF2 91289 mdanderson.org 37 22 50944863 50944863 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_033200 exon4 c.G446A p.R149H TCCTTGCGGTGGG 19 3 0.16 18 0 0 158 0 0.00 NPHP3 27031 broad.mit.edu 37 3 132426958 132426958 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . NPHP3 NM_153240 exon7 c.C1262A p.T421N TTGCTGGTCTTGT 92 3 0.03 121 0 0 110 20 0 0.00 SI 6476 broad.mit.edu;mdanderson.org 37 3 164709207 164709207 + Missense_Mutation SNP A A T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . SI NM_001041 exon44 c.T5042A p.I1681K AGGTTTATTGTGT 125 6 0.05 135 0 0 500 0 0 KIT 3815 bcgsc.ca 37 4 55593603 55593603 + Missense_Mutation SNP T T G rs121913235 bycluster TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf KIT,NS,germ_cell_tumour,0,64 KIT NM_000222 exon11 c.T1669G p.W557G GTACAGTGGAAGG 143 1 0.01 123 0 0 7396 64 212 1 0.00 . 0 broad.mit.edu 37 4 68311853 68311855 + RNA DEL GAG GAG - novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TATGGCGAGGAGG 6 1 0.17 8 0 0 11 0 0.00 LINC00575 0 broad.mit.edu 37 4 83542135 83542137 + RNA DEL CAC CAC - rs56218113 bycluster;alternate_allele TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 CAC CAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TGGAATCACCACC 8 4 0.50 4 0 0 0 0 SEC24A 10802 mdanderson.org 37 5 134007576 134007576 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_021982 exon4 c.G817T p.A273S TTATTGGGTGAGA 58 3 0.05 52 1 0.0192307692 31 0 0.00 GLYATL3 389396 broad.mit.edu;mdanderson.org 37 6 49494536 49494536 + Missense_Mutation SNP T T G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . GLYATL3 NM_001010904 exon6 c.T776G p.L259R TAAGCCTCCTGAA 83 8 0.10 72 0 0 19 0 0 NT5C3A 0 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 7 33102326 33102326 + Missense_Mutation SNP C C G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001002010 exon1 c.G7C p.A3P ACGGGGCCCTCAT 108 7 0.06 107 0 0 19 1 0.05 . 0 broad.mit.edu 37 7 65996561 65996561 + RNA DEL T T - novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GCTCCCTTTTGGG 6 2 0.33 5 0 0 17 0 0.00 . 0 broad.mit.edu 37 7 75729556 75729557 + RNA INS - - A rs61650407 bycluster;by1000genomes TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TATAATTAAAAAA 7 6 0.86 4 0 0 0 0 AZGP1P1 0 broad.mit.edu 37 7 99578706 99578706 + RNA DEL A A - novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTTTACAGTGAAA 7 3 0.43 6 0 0 0 0 VGF 7425 mdanderson.org 37 7 100806424 100806424 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_003378 exon2 c.C1701A p.H567Q GGCGTGGTGGTAG 19 2 0.11 41 0 0 1 0 0.00 BRAF 673 broad.mit.edu 37 7 140477807 140477807 + Missense_Mutation SNP C C T rs180177038 TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . BRAF NM_004333 exon12 c.G1501A p.E501K CTACTTCATTTTT 134 5 0.04 146 0 0 36346 36 2 0.06 rescued with RNA-seq ERICH1 157697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 623373 623373 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf ERICH1,NS,carcinoma,+1,1 ERICH1 NM_207332 exon4 c.G979A p.E327K CTTCCTCGCTGGC 170 25 0.15 134 0 0 1 1 75 11 0.15 PURG 29942 bcgsc.ca 37 8 30889696 30889696 + Silent SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf PURG_ENST00000475541,colon,carcinoma,-2,2 PURG NM_013357 exon1 c.C603A p.T201T CATCATGGTTTGT 156 1 0.01 117 0 0 79 2 1 0 0.00 MTFR1 9650 mdanderson.org 37 8 66620263 66620263 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001145839 exon7 c.G950T p.R317I TGCCCAGATTTCT 39 3 0.08 31 0 0 2 0 0.00 KHDRBS3 10656 broad.mit.edu 37 8 136659295 136659295 + Missense_Mutation SNP G G T rs138429826 bycluster;alternate_allele TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . KHDRBS3 NM_006558 exon9 c.G1009T p.V337F AAGGGCGTCTACA 163 5 0.03 108 1 0.0092592593 53 210 0 0.00 ZNF696 79943 mdanderson.org 37 8 144378441 144378441 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_030895 exon3 c.A596G p.H199R TCCGGCACCAGCG 12 3 0.25 11 0 0 24 1 0.04 ZC3H3 23144 mdanderson.org 37 8 144590009 144590009 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_015117 exon4 c.G1622A p.R541H ACAATGCGGTAGC 40 3 0.08 29 0 0 98 0 0.00 . 441442 bcgsc.ca 37 9 68358239 68358239 + RNA SNP G G T rs112095944 bycluster TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTGGAGGTCATCA 34 2 0.06 35 3 0.0857142857 1 0 0.00 APBA1 320 mdanderson.org 37 9 72131575 72131575 + Silent SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001163 exon2 c.C552A p.S184S GGGCTCGGAGTAG 46 3 0.07 47 0 0 4 0 0.00 STS 412 broad.mit.edu 37 X 7177555 7177555 + Missense_Mutation SNP T T C novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . STS NM_000351 exon5 c.T563C p.L188P TCTTCCTCCCCCT 134 3 0.02 110 2 0.0181818182 64 15 0 0.00 ZFX 7543 bcgsc.ca 37 X 24228773 24228773 + Silent SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . ZFX NM_003410 exon10 c.C1698T p.H566H AAAGCACATGAGA 235 0 0.00 166 0 0 61 45 0 0.00 DDX3X 1654 bcgsc.ca 37 X 41204800 41204801 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . DDX3X NM_001356 exon12 c.1314_1315insG p.T438fs TGCAACAGGTAAC 259 0 0.00 226 0 0 138 375 0 0.00 KDM5C 8242 broad.mit.edu 37 X 53231044 53231044 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . KDM5C NM_004187 exon13 c.G1858A p.A620T AGTCAGCAGTGCA 150 5 0.03 125 0 0 385 240 0 0.00 HCFC1 3054 mdanderson.org 37 X 153222908 153222908 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-05A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6158162d-f33a-4e39-9246-b19175ac7ba7 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_005334 exon13 c.C2210A p.T737N GTGGTAGTGATGA 44 3 0.07 44 0 0 118 0 0.00