Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TMEM88B	643965	mdanderson.org	37	1	1361691	1361691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001146685	exon1	c.C184T	p.P62S	CTGCTGCCCGCCG		15	2	0.13	25	0	0				0	0				
PRAMEF2	65122	mdanderson.org	37	1	12919682	12919682	+	Missense_Mutation	SNP	C	C	T	rs202143308	bycluster	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_023014	exon3	c.C422T	p.T141M	CAAGGACGGGAGA		74	5	0.07	135	1	0.0074074074				0	0				
BCL2L15	440603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	114429213	114429213	+	Silent	SNP	G	G	A	rs75493886	bycluster;by1000genomes	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	BCL2L15,rectum,carcinoma,-1,2	BCL2L15	NM_001010922	exon2	c.C195T	p.N65N	TTCTCCGTTGAAC		72	6	0.08	81	0	0	0	-1	2	101	0	0.00			
C2CD4D	100191040	mdanderson.org	37	1	151811350	151811350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001136003	exon2	c.G116T	p.C39F	TTGGGGCAGGCGC		31	3	0.10	34	0	0				4	0	0.00			
TRIM46	80128	mdanderson.org	37	1	155156381	155156381	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_025058	exon10	c.G1995T	p.S665S	GGGGTCGGGGGCA		35	3	0.09	21	0	0				0	0				
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186055461	186055461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	HMCN1,NS,carcinoma,-2,1	HMCN1	NM_031935	exon58	c.G8968A	p.G2990S	GTCTCTGGTTTTC		155	42	0.27	148	0	0		-2	1	0	0				
MCM10	55388	mdanderson.org	37	10	13239659	13239659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_182751	exon15	c.G2014T	p.V672F	GGCCAGGTTCTTA		44	3	0.07	79	0	0				4	0	0.00			
DNAJC1	64215	mdanderson.org	37	10	22207710	22207710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_022365	exon6	c.C727A	p.Q243K	TTACCTGGATGAG		46	3	0.07	54	0	0				16	0	0.00			
.	0	broad.mit.edu	37	10	30982853	30982854	+	RNA	INS	-	-	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	TGTTTTATTTTTT		6	2	0.33	4	0	0				0	0				
HSD17B7P2	0	broad.mit.edu	37	10	38652034	38652035	+	RNA	INS	-	-	TT	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	TTAACTCTTTTTT		7	3	0.43	3	0	0				0	0				
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	bycluster;byfrequency	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC		82	4	0.05	89	0	0	0.003	0	1	10	0	0.00			
SLIT1	6585	mdanderson.org	37	10	98807466	98807466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_003061	exon16	c.C1615A	p.P539T	ACTGGGGGATGCG		27	3	0.11	43	0	0				0	0				
FBXL15	79176	mdanderson.org	37	10	104181702	104181702	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_024326	exon3	c.C366T	p.G122G	GTTGGGCGGCTGC		10	2	0.20	18	0	0				44	0	0.00			
OBFC1	79991	mdanderson.org	37	10	105659887	105659887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_024928	exon5	c.C390A	p.D130E	GATCGTGTCCCCG		46	3	0.07	70	0	0				41	0	0.00			
PGA3	643834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60971070	60971070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001079807	exon1	c.C34A	p.L12I	GTGGCACTCTCTG		184	85	0.46	239	1	0.0041841004				0	0				
LRRC32	2615	broad.mit.edu;mdanderson.org	37	11	76370933	76370933	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	LRRC32	NM_005512	exon3	c.G1704A	p.L568L	CCCCTGCAGGTAG		25	3	0.12	35	0	0		74		34	3	0.09			
GRIA4	0	broad.mit.edu	37	11	105769101	105769101	+	Missense_Mutation	SNP	G	G	T	rs375247322	alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	GRIA4	NM_001077244	exon7	c.G833T	p.R278L	TGGATCGCTGGAA		120	4	0.03	137	0	0		380		0	0				
B3GAT1	27087	bcgsc.ca	37	11	134253610	134253610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	B3GAT1	NM_054025	exon3	c.C585A	p.D195E	GTCGTCGTCGGCG		46	4	0.09	57	0	0		49		0	0				
GRIN2B	2904	broad.mit.edu	37	12	13761690	13761690	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	GRIN2B	NM_000834	exon9	c.T1857C	p.P619P	CTGCACAGGTACG		265	9	0.03	108	0	0		303		0	0				
KIAA1551	55196	broad.mit.edu	37	12	32135279	32135279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_018169	exon4	c.A1390G	p.N464D	CCAGAGAATGCAG		213	4	0.02	75	0	0				41	0	0.00			
GJA3	2700	mdanderson.org	37	13	20717246	20717246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_021954	exon2	c.G182T	p.C61F	TTCTCGCAGCCCG		38	3	0.08	68	0	0				0	0				
CAPN3	825	mdanderson.org	37	15	42702861	42702861	+	Missense_Mutation	SNP	G	G	T	rs137927542	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_000070	exon21	c.G2260T	p.A754S	AACGACGCAGGTG		39	3	0.08	34	0	0				17	0	0.00			
ALPK3	57538	mdanderson.org	37	15	85400648	85400648	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_020778	exon6	c.C3285T	p.S1095S	CGGGAGCACAGCC		33	3	0.09	54	0	0				4	0	0.00			
CHD2	1106	mdanderson.org	37	15	93540280	93540280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001271	exon29	c.A3689G	p.E1230G	AGTTTGAGATGCT		35	3	0.09	66	0	0				14	0	0.00			
ECI1	1632	mdanderson.org	37	16	2293048	2293048	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001919	exon6	c.A741G	p.P247P	CTCACCTGGAATG		25	3	0.12	16	0	0				235	0	0.00			
PDXDC1	23042	hgsc.bcm.edu	37	16	15122751	15122751	+	Silent	SNP	C	C	T	rs117411702	bycluster	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	PDXDC1,NS,carcinoma,0,3	PDXDC1	NM_015027	exon15	c.C1221T	p.A407A	TAAAGCCGTCCCA		98	4	0.04	60	1	0.0166666667	0.002	0	3	245	14	0.06			
PHKB	5257	broad.mit.edu	37	16	47694447	47694447	+	Missense_Mutation	SNP	C	C	T	rs376951504		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	PHKB	NM_000293	exon21	c.C2002T	p.L668F	GAACAACTTGATT		95	4	0.04	127	0	0		298		33	1	0.03			
SNX20	124460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50707856	50707856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	SNX20,NS,carcinoma,+1,1	SNX20	NM_182854	exon4	c.G412T	p.V138L	ACTCCACGTCTTC		40	8	0.20	30	0	0		1	1	3	0	0.00			
AMFR	267	mdanderson.org	37	16	56401360	56401360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001144	exon12	c.C1595A	p.A532D	ACCTGAGCAGAAG		38	3	0.08	39	0	0				111	0	0.00			
ARL2BP	23568	mdanderson.org	37	16	57283743	57283743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_012106	exon4	c.C272T	p.A91V	ACATGGCAGCCTT		42	3	0.07	44	0	0				67	0	0.00			
ZFHX3	463	mdanderson.org	37	16	72830446	72830446	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	ZFHX3,right_upper_lobe,carcinoma,0,2	ZFHX3	NM_006885	exon9	c.A6135C	p.P2045P	AGGGGGTGGAGGG		40	16	0.40	70	11	0.1571428571		0	2	0	0				
GP1BA	2811	mdanderson.org	37	17	4837171	4837171	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_000173	exon2	c.G1272A	p.P424P	CACCCCGGAGCCC		22	3	0.14	17	0	0				1	0	0.00			
WDR16	146845	mdanderson.org	37	17	9480015	9480015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001080556	exon1	c.G3T	p.M1I	AAGGATGGATAAC		42	3	0.07	37	0	0				0	0				
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		164	7	0.04	155	5	0.0322580645				16	11	0.69			
ANKFN1	162282	mdanderson.org	37	17	54558038	54558038	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	ANKFN1,right_upper_lobe,carcinoma,0,1	ANKFN1	NM_153228	exon16	c.G1959A	p.W653X	GGAATGGGAATGG		41	3	0.07	42	0	0		0	1	0	0				
CLTC	1213	mdanderson.org	37	17	57733338	57733338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_004859	exon6	c.G919A	p.A307T	GTTACTGCACCTC		41	3	0.07	42	0	0				78	0	0.00			
KCTD1	284252	broad.mit.edu;mdanderson.org	37	18	24127403	24127403	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	KCTD1	NM_001142730	exon1	c.C1098A	p.R366R	CTCGGCGCGCTTC		46	3	0.07	55	0	0		76		5	0	0.00			
SMAD4	4089	mdanderson.org	37	18	48586287	48586287	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_005359	exon8	c.955+1G>T	.	ATCCTGGTAAGTG		44	3	0.07	82	0	0				0	0				
SERPINB10	5273	broad.mit.edu;bcgsc.ca	37	18	61587085	61587085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	SERPINB10	NM_005024	exon4	c.G436T	p.A146S	GTGGAAGCTTCTG		83	6	0.07	111	1	0.009009009		53		0	0				
MCOLN1	57192	mdanderson.org	37	19	7595282	7595282	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_020533	exon12	c.G1470T	p.V490V	CCTGGTGTGGCTC		21	3	0.14	46	0	0				35	0	0.00			
ZBTB32	27033	mdanderson.org	37	19	36205860	36205860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_014383	exon2	c.G332T	p.R111M	GCTGGAGGGCTCG		31	3	0.10	41	0	0				1	0	0.00			
HKR1	284459	mdanderson.org	37	19	37853502	37853502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	HKR1,NS,carcinoma,0,1	HKR1	NM_181786	exon6	c.G805T	p.G269W	CAAACTGGGGAGA		46	3	0.07	66	0	0		0	1	32	0	0.00			
MARK4	57787	mdanderson.org	37	19	45762334	45762334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001199867	exon2	c.G139T	p.A47S	TCCATCGCCTCCT		38	3	0.08	59	0	0				16	0	0.00			
ZNF264	9422	mdanderson.org	37	19	57723935	57723935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_003417	exon4	c.G1470T	p.K490N	TGGAAAGGCCTTC		42	3	0.07	68	0	0				2	0	0.00			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	ATTTTCCATTTTT		121	12	0.10	113	8	0.0707964602				0	0				
PROM2	150696	mdanderson.org	37	2	95953990	95953990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001165977	exon21	c.T2276C	p.L759P	AGCCCCTCTCCGG		43	3	0.07	42	0	0				9	0	0.00			
LOC401010	0	bcgsc.ca	37	2	132201189	132201189	+	RNA	SNP	G	G	C	rs79072949	bycluster	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	GGCTTCGCTGGGG		27	12	0.44	43	6	0.1395348837				0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132919225	132919225	+	Silent	SNP	C	C	T	rs9750450	bycluster;byfrequency;by1000genomes	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	ANKRD30BL	.	.	.	.	GGGGCTCGGGCGC		128	4	0.03	120	1	0.0083333333		36		0	0				
UBR3	130507	bcgsc.ca;mdanderson.org	37	2	170728847	170728847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	UBR3	NM_172070	exon2	c.G647T	p.C216F	TATTTTGTCTTAT		88	5	0.06	91	0	0		182		5	0	0.00			
XRCC5	7520	mdanderson.org	37	2	216990649	216990649	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_021141	exon7	c.G693T	p.L231L	GAGTCTGAGAAAA		43	3	0.07	57	0	0				184	0	0.00			
CHD6	0	broad.mit.edu;mdanderson.org	37	20	40120435	40120435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	CHD6	NM_032221	exon11	c.C1339A	p.Q447K	GTTTCTGCCAGGA		72	4	0.06	53	0	0		312		6	0	0.00			
STX16-NPEPL1	100534593	hgsc.bcm.edu	37	20	57266755	57266755	+	RNA	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	CTTTTTTTTTTTT		45	6	0.13	30	0	0				0	0				
TEKT4P2	0	broad.mit.edu	37	21	9907310	9907310	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	CTTCTGGCGGTCG		17	3	0.18	23	0	0				30	1	0.03			
MCM3AP	8888	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	47695160	47695160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	MCM3AP	NM_003906	exon6	c.G1938T	p.R646S	CATGTACCTCTCC		135	10	0.07	118	1	0.0084745763		146		39	2	0.05			
SSTR3	6753	mdanderson.org	37	22	37602632	37602632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001051	exon2	c.C1211A	p.A404D	GTGGAAGCCTCTT		31	3	0.10	25	0	0				0	0				
MAPK8IP2	23542	broad.mit.edu;mdanderson.org	37	22	51045123	51045123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	MAPK8IP2	.	.	.	.	TGCGCCCTCCTGC		52	4	0.08	70	0	0		78		1	1	1.00			
LAMB2	3913	mdanderson.org	37	3	49161062	49161062	+	Missense_Mutation	SNP	C	C	T	rs141988617		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_002292	exon25	c.G3800A	p.R1267H	ATTTCACGCCTGC		47	3	0.06	91	0	0	0			134	0	0.00			
GSX2	170825	mdanderson.org	37	4	54966519	54966519	+	Missense_Mutation	SNP	G	G	T	rs377377329		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_133267	exon1	c.G8T	p.R3L	TGTCGCGCTCCTT		50	3	0.06	33	0	0				0	0				
PABPC4L	132430	mdanderson.org	37	4	135122332	135122332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001114734	exon2	c.A17G	p.E6G	CCCAGCTCAGGCA		42	3	0.07	75	0	0				4	0	0.00			
CASP3	836	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	185550512	185550512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	CASP3	NM_004346	exon8	c.T748C	p.F250L	AGGAAAAGGACTC		59	4	0.07	102	0	0		27		65	0	0.00			
PDGFRB	5159	mdanderson.org	37	5	149512314	149512314	+	Silent	SNP	G	G	T	rs142621427	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_002609	exon7	c.C1126A	p.R376R	CTCACCGGGTCTC		48	3	0.06	56	0	0				71	0	0.00			
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	162901165	162901165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001142556	exon10	c.T1007C	p.L336P	AAAAGCTTCAACA		241	15	0.06	298	0	0				10	2	0.20			
CUL9	23113	mdanderson.org	37	6	43182824	43182824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_015089	exon30	c.A5696G	p.E1899G	TGCTGGAGGCCTG		32	4	0.13	30	0	0				13	0	0.00			
RNF216P1	441191	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	5024702	5024702	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	TCACCCGAAAGGT		87	14	0.16	83	0	0				16	1	0.06			
SP8	221833	broad.mit.edu;mdanderson.org	37	7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	SP8	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		39	3	0.08	37	0	0		43		0	0				
SP4	6671	broad.mit.edu;mdanderson.org	37	7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		50	3	0.06	47	0	0		91	1	1	0	0.00			
MTERF	7978	mdanderson.org	37	7	91503479	91503479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_006980	exon3	c.T629C	p.L210P	TTATTCAGATCAA		81	4	0.05	61	0	0				13	0	0.00			
MUC17	140453	mdanderson.org	37	7	100685848	100685848	+	Silent	SNP	T	T	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	MUC17,NS,carcinoma,+2,1	MUC17	NM_001040105	exon3	c.T11151A	p.P3717P	AACACCTTCTGTT		42	3	0.07	45	0	0		2	1	133	0	0.00			
PRRT4	401399	mdanderson.org	37	7	127992594	127992594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	PRRT4,NS,carcinoma,+1,1	PRRT4	NM_001174164	exon6	c.C1016A	p.A339E	CTCGGCGCCTCGG		17	2	0.12	13	0	0		1	1	1	0	0.00			
HIPK2	28996	mdanderson.org	37	7	139257993	139257993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_022740	exon15	c.G3277A	p.A1093T	GGGCAGCGGCAGC		16	2	0.13	15	0	0				0	0				
XKR5	389610	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	6679483	6679483	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	XKR5	NM_207411	exon5	c.C715A	p.L239M	TGAACAGCCTCCA		60	5	0.08	59	0	0		20		0	0				
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	9623905	9623905	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	TNKS	NM_003747	exon25	c.3709delC	p.H1237fs	CTACACACAAGGA		73	12	0.16	101	0	0		198		5	0	0.00			
KIAA0146	0	ucsc.edu	37	8	48508458	48508458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	KIAA0146	NM_001080394	exon9	c.G1183A	p.E395K	GATTCAGAAAAAA		147	1	0.01	108	1	0.0092592593		64		38	10	0.26			
ESRP1	54845	ucsc.edu	37	8	95686610	95686610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	ESRP1	NM_001122827	exon12	c.T1527A	p.H509Q	GTGTCATAAAAAA		140	1	0.01	128	2	0.015625		148		40	5	0.13			
NFIB	4781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14116325	14116325	+	Silent	SNP	T	T	A	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	NFIB	NM_001190737	exon9	c.A1266T	p.V422V	CCCTACTACTTGA		46	14	0.30	74	1	0.0135135135		91		2	1	0.50			
PRSS3	5646	broad.mit.edu	37	9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	rs201061108		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	PRSS3	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		48	9	0.19	74	2	0.027027027		79		1	0	0.00			
PRSS3	5646	broad.mit.edu	37	9	33794812	33794812	+	Missense_Mutation	SNP	G	G	T	rs199873220		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	PRSS3	NM_001197097	exon2	c.G23T	p.G8V	CAAGTGGCTTCAC		50	9	0.18	80	2	0.025		79		1	0	0.00			
.	0	broad.mit.edu	37	9	98180678	98180679	+	RNA	DEL	GT	GT	-	rs376542879		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	.	.	.	.	GGTGTGGTGTGTG		8	3	0.38	4	0	0				0	0				
BCOR	54880	broad.mit.edu	37	X	39916463	39916463	+	Nonsense_Mutation	SNP	G	G	A	rs199676230	by1000genomes;alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	BCOR	NM_001123385	exon11	c.C4540T	p.R1514X	GGTGTCGCACAAT		183	4	0.02	119	0	0		351		26	0	0.00			
STARD8	9754	broad.mit.edu	37	X	67940201	67940201	+	Missense_Mutation	SNP	G	G	C	rs201883068		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	STARD8	NM_001142503	exon8	c.G1985C	p.G662A	GCACGGGCCAGCC		172	36	0.21	87	14	0.1609195402		282		2	0	0.00			
BRWD3	254065	broad.mit.edu	37	X	79932398	79932398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	BRWD3	NM_153252	exon41	c.A5119G	p.R1707G	TTCCCCTCCCCCT		136	4	0.03	72	2	0.0277777778		251		1	0	0.00