Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PRAMEF2 65122 hgsc.bcm.edu 37 1 12921136 12921136 + Silent SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 PRAMEF2,pharynx,carcinoma,0,1 PRAMEF2 NM_023014 exon4 c.C927T p.D309D AGAGGACTTGAAG 104 6 0.06 66 0 0 0 1 0 0 PDPN 10630 broad.mit.edu 37 1 13910397 13910397 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . PDPN NM_006474 exon1 c.G97A p.A33T GCTCCTGCTCCCA 146 6 0.04 125 0 0 44 63 0 0.00 CSF3R 1441 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 36937224 36937224 + Silent SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_156039 exon10 c.C1095T p.S365S CCGTCCGCTGTCT 110 6 0.05 114 0 0 7 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145109975 145109976 + RNA INS - - C rs11458983 bycluster TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . . . . . AACTTTGCTAAAG 12 4 0.33 6 0 0 1 0 0.00 KPRP 448834 broad.mit.edu 37 1 152733728 152733728 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . KPRP NM_001025231 exon2 c.G1664A p.R555K AGCGGAGGGGTCA 139 5 0.04 121 0 0 152 0 0 CD1E 913 hgsc.bcm.edu;mdanderson.org 37 1 158325337 158325337 + Silent SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001042584 exon3 c.G603T p.G201G AGCAGGGGAGTCA 86 4 0.05 56 0 0 2 0 0.00 . 0 broad.mit.edu 37 1 222435118 222435119 + RNA INS - - T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . . . . . TAATTTCTTTTTT 6 2 0.33 5 0 0 0 0 PI4K2A 55361 hgsc.bcm.edu 37 10 99410611 99410729 + Frame_Shift_Del DEL ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA - novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_018425 exon2 c.436_466del p.146_156del CCTGTCATTTCTT 21 0 0.00 39 0 0 0 0 SH3PXD2A 9644 mdanderson.org 37 10 105361836 105361836 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_014631 exon14 c.C3055T p.P1019S GGGCGGGCAGTAG 43 3 0.07 55 0 0 20 0 0.00 EMX2 2018 mdanderson.org 37 10 119307662 119307662 + Missense_Mutation SNP A A G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001165924 exon2 c.A493G p.R165G GAAAAAAGGGACG 44 3 0.07 49 0 0 19 0 0.00 MUC2 4583 mdanderson.org 37 11 1093298 1093298 + Missense_Mutation SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_002457 exon30 c.C5117T p.T1706M CCACTACGGTGAC 24 2 0.08 26 0 0 1 0 0.00 KRTAP5-5 439915 hgsc.bcm.edu;broad.mit.edu 37 11 1651442 1651442 + Silent SNP G G C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 KRTAP5-5,bladder,carcinoma,0,4 KRTAP5-5 NM_001001480 exon1 c.G372C p.G124G TGGGGGGTCCAAG 28 3 0.11 37 1 0.027027027 0 4 0 0 LRRC4C 57689 broad.mit.edu 37 11 40137725 40137725 + Missense_Mutation SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . LRRC4C NM_020929 exon5 c.G118A p.G40S CCAGACCAGCCAC 110 4 0.04 137 0 0 190 0 0 PSMC3 5702 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 47445698 47445698 + Silent SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_002804 exon6 c.C490T p.L164L TGGGCAGCGTCTC 80 12 0.15 97 0 0 355 75 0.21 BBS1 582 mdanderson.org 37 11 66290988 66290988 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_024649 exon10 c.G892T p.V298L ATCCGGGTACACA 47 3 0.06 121 0 0 15 0 0.00 SUV420H1 51111 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 67925696 67925697 + Frame_Shift_Del DEL TG TG - novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 TG TG Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_017635 exon11 c.2117_2118del p.706_706del ATTAACTGTGCAT 123 49 0.40 107 0 0 7 0 0.00 PPP6R3 55291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 68359128 68359128 + Missense_Mutation SNP G G C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001164160 exon18 c.G1870C p.E624Q ATATGGGAGGAAA 51 10 0.20 53 0 0 25 3 0.12 LRRC32 2615 mdanderson.org 37 11 76370909 76370909 + Silent SNP G G A rs202216778 by1000genomes TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001128922 exon3 c.C1728T p.C576C ATTGCCGCAGCAG 36 3 0.08 51 1 0.0196078431 0 11 0 0.00 VSIG2 23584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124619734 124619734 + Missense_Mutation SNP C C G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_014312 exon4 c.G456C p.Q152H TCCACTCTGACTG 42 14 0.33 39 0 0 7 2 0.29 CHD4 1108 broad.mit.edu 37 12 6709741 6709741 + Missense_Mutation SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . CHD4 NM_001273 exon8 c.G1022A p.R341H CGGCTGCGGCTAC 208 5 0.02 103 0 0 539 84 0 0.00 MLF2 8079 broad.mit.edu 37 12 6858045 6858045 + Silent SNP T T C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . MLF2 NM_005439 exon8 c.A663G p.G221G CCTTCGTCCCCCA 181 25 0.14 102 7 0.068627451 26 862 41 0.05 DIP2B 57609 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 12 51034560 51034560 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_173602 exon3 c.G226T p.A76S CCATCTGCAGCTC 107 5 0.05 84 0 0 3 0 0.00 . 0 broad.mit.edu 37 12 52493869 52493869 + RNA DEL C C - novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . . . . . TCCTCTCCCCCCC 8 3 0.38 5 0 0 0 0 ZFC3H1 196441 mdanderson.org 37 12 72041536 72041536 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_144982 exon3 c.C1073A p.S358Y TTTTCAGACAGAA 49 3 0.06 32 0 0 0 0 TRAFD1 10906 broad.mit.edu 37 12 112579948 112579948 + Silent SNP T T G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . TRAFD1 NM_001143906 exon6 c.T699G p.G233G AGAGGGTGGTGAA 76 10 0.13 58 7 0.1206896552 42 41 0 0.00 TPTE2 93492 bcgsc.ca 37 13 20056686 20056686 + Missense_Mutation SNP T T C rs201542496 TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . TPTE2 NM_199254 exon5 c.A121G p.M41V CTAACATACTTTA 421 12 0.03 436 2 0.004587156 225 0 0 TPTE2P1 0 broad.mit.edu 37 13 25527490 25527491 + RNA INS - - AAAAAG rs375560921 TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . . . . . AGGTTCTAAAAAA 37 11 0.30 20 0 0 0 0 RXFP2 122042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 32367149 32367149 + Missense_Mutation SNP T T A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_130806 exon16 c.T1710A p.N570K GAAAAATGGAGTA 73 15 0.21 125 0 0 0 0 THSD1 55901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 52952281 52952281 + Missense_Mutation SNP A A T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_018676 exon5 c.T1824A p.D608E ATTTAGATCCAGC 66 7 0.11 119 0 0 4 0 0.00 SALL2 6297 hgsc.bcm.edu 37 14 21991589 21991589 + Missense_Mutation SNP G G T rs372214185 alternate_allele TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 SALL2,colon,carcinoma,0,1 SALL2 NM_005407 exon2 c.C2273A p.P758Q TCTTCCGGTGATG 62 5 0.08 64 0 0 0 1 93 0 0.00 NYNRIN 57523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24880356 24880356 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_025081 exon5 c.G2489A p.R830Q GACACCGAGAGGT 86 17 0.20 106 0 0 66 18 0.27 OTUD7A 161725 mdanderson.org 37 15 31779760 31779760 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_130901 exon9 c.C1160A p.P387H GTCAGGGGGATCA 90 5 0.06 126 0 0 0 0 KLHL25 64410 mdanderson.org 37 15 86311959 86311959 + Silent SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_022480 exon2 c.C1083T p.Y361Y GGTGTCGTACACC 39 3 0.08 71 0 0 9 0 0.00 IGFALS 3483 mdanderson.org 37 16 1840925 1840925 + Silent SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001146006 exon2 c.C1608A p.P536P GCTGTTGGGCAAT 13 2 0.15 15 0 0 8 0 0.00 AMDHD2 51005 mdanderson.org 37 16 2579075 2579075 + Missense_Mutation SNP C C A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001145815 exon9 c.C1210A p.L404M GGGACCCTGGACT 28 3 0.11 35 0 0 58 0 0.00 OR2C1 4993 mdanderson.org 37 16 3406294 3406294 + Missense_Mutation SNP G G T rs144910600 alternate_allele TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_012368 exon1 c.G354T p.M118I GGTGATGGCATTT 50 3 0.06 59 1 0.0169491525 0 0 TFAP4 7023 bcgsc.ca;mdanderson.org 37 16 4312419 4312419 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . TFAP4 NM_003223 exon3 c.C260T p.A87V AGAATGGCTGCCT 89 5 0.06 64 0 0 31 61 0 0.00 GSPT1 2935 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 11990539 11990539 + Silent SNP C C A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . GSPT1 NM_002094 exon4 c.G540T p.P180P CTCTGGCGGCCTT 196 65 0.33 142 0 0 71 58 19 0.33 PLA2G15 23659 mdanderson.org 37 16 68279456 68279456 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_012320 exon1 c.G127T p.V43F GTGCTGGGTGAGG 16 2 0.13 23 0 0 22 0 0.00 ANKRD11 29123 broad.mit.edu 37 16 89346906 89346906 + Missense_Mutation SNP T T G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . ANKRD11 NM_001256183 exon9 c.A6044C p.Y2015S GCGGGGTACGGCG 58 30 0.52 53 37 0.6981132075 195 63 13 0.21 MSL1 339287 mdanderson.org 37 17 38288344 38288344 + Missense_Mutation SNP T T C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001012241 exon6 c.T692C p.L231P CAGACCTTTTGGA 47 3 0.06 60 0 0 46 0 0.00 ACE 1636 mdanderson.org 37 17 61561704 61561704 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_000789 exon12 c.G1723A p.A575T CTGCAGGCTGGCT 37 3 0.08 38 0 0 6 0 0.00 SETBP1 26040 mdanderson.org 37 18 42531720 42531720 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_015559 exon4 c.G2415T p.M805I AACTATGCCAAAT 46 3 0.07 69 0 0 4 0 0.00 MYO5B 4645 ucsc.edu 37 18 47429149 47429149 + Missense_Mutation SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . MYO5B NM_001080467 exon21 c.G2626A p.A876T TGCGTGCCATCCA 21 4 0.19 15 0 0 178 5 0 0.00 GRP 2922 mdanderson.org 37 18 56887564 56887564 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001012512 exon1 c.G67T p.A23S GGGCGAGCGGTCC 15 3 0.20 14 0 0 7 0 0.00 APC2 10297 mdanderson.org 37 19 1467050 1467050 + Silent SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_005883 exon15 c.C3750T p.C1250C GCGCTGCCGGCTG 44 3 0.07 48 0 0 4 0 0.00 MEX3D 399664 mdanderson.org 37 19 1556639 1556639 + Silent SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001174118 exon2 c.C879A p.G293G GGTGGCGCCCTTG 23 3 0.13 42 0 0 42 0 0.00 CPAMD8 27151 mdanderson.org 37 19 17038840 17038840 + Silent SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_015692 exon25 c.C3490A p.R1164R TGGCTCGCTCAGA 72 4 0.06 76 0 0 18 0 0.00 NCCRP1 342897 mdanderson.org 37 19 39691041 39691041 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 NCCRP1,colon,carcinoma,-1,1 NCCRP1 NM_001001414 exon5 c.G604T p.A202S CTGCTGGCGGCCG 46 3 0.07 55 0 0 -1 1 15 0 0.00 FIZ1 84922 mdanderson.org 37 19 56109217 56109217 + Silent SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_032836 exon2 c.C15A p.P5P TGGGGCGGGGACG 41 3 0.07 41 0 0 10 0 0.00 ZSCAN18 65982 mdanderson.org 37 19 58600117 58600117 + Missense_Mutation SNP C C G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001145542 exon3 c.G659C p.G220A AGCTCGCCTGGTA 30 2 0.07 43 0 0 41 0 0.00 RIF1 55183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152321277 152321277 + Missense_Mutation SNP G G C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_018151 exon30 c.G5243C p.G1748A TCATTGGGTTAAA 143 43 0.30 107 0 0 7 4 0.57 ZDBF2 57683 mdanderson.org 37 2 207162013 207162013 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_020923 exon4 c.G104T p.R35I AGAGTAGACGTCA 112 5 0.04 75 0 0 3 0 0.00 IRS1 3667 broad.mit.edu;mdanderson.org 37 2 227662443 227662443 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . IRS1 NM_005544 exon1 c.C1012T p.R338C CTGGGCGGGACAT 10 4 0.40 17 0 0 141 16 7 0.44 PTPRT 11122 broad.mit.edu;mdanderson.org 37 20 40730919 40730919 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . PTPRT NM_133170 exon27 c.C3616A p.P1206T CACGGGGTGTCAC 66 4 0.06 46 0 0 372 3 0 0.00 ELMO2 63916 mdanderson.org 37 20 45000326 45000326 + Silent SNP G G A rs149080790 bycluster;byfrequency;by1000genomes TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_133171 exon18 c.C1585T p.L529L CCCTCAGCTCCCT 51 3 0.06 31 0 0 0 49 0 0.00 CHEK2 11200 broad.mit.edu 37 22 29091840 29091841 + Missense_Mutation DNP TG TG CA novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 CHEK2,bladder,carcinoma,0,38 CHEK2 NM_001005735 exon12 c.C1245T p.K416E AAATCTTGGAGTG 279 7 0.03 217 0 0 438 38 32 0 0.00 TRMU 55687 mdanderson.org 37 22 46731700 46731700 + Silent SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_018006 exon1 c.C39T p.G13G GTCCGGCGGCGTG 19 2 0.11 17 0 0 23 0 0.00 USP4 7375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49318243 49318243 + Missense_Mutation SNP C C G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_003363 exon20 c.G2578C p.A860P GCCTTGCTGACAG 79 25 0.32 84 0 0 85 34 0.40 MUC4 4585 broad.mit.edu 37 3 195512457 195512457 + Silent SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . MUC4 NM_018406 exon2 c.C5994T p.A1998A AGGGGTGGCATGA 105 5 0.05 96 1 0.0104166667 1505 0 0 BRD9 65980 mdanderson.org 37 5 865672 865672 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_023924 exon15 c.C1550A p.P517H TCGTCAGGGTCCA 21 2 0.10 19 0 0 57 0 0.00 IRX2 153572 mdanderson.org 37 5 2751510 2751510 + Silent SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001134222 exon1 c.C18A p.G6G CAGGTAGCCCTGC 12 2 0.17 8 0 0 0 0 IRX1 79192 broad.mit.edu;mdanderson.org 37 5 3600194 3600194 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 IRX1,rectum,carcinoma,0,1 IRX1 NM_024337 exon2 c.G1132A p.A378T AACAGCGCATTCC 133 5 0.04 198 0 0 106 1 22 0 0.00 ARHGEF28 64283 mdanderson.org 37 5 73205560 73205560 + Silent SNP C C A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001177693 exon34 c.C4485A p.L1495L GGACCTCCAGCTC 19 3 0.16 21 0 0 7 0 0.00 ERAP1 51752 hgsc.bcm.edu;bcgsc.ca 37 5 96119761 96119761 + Missense_Mutation SNP T T C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001198541 exon14 c.A1967G p.K656R AAGGCCTTTTCAA 83 4 0.05 107 0 0 16 0 0.00 ALDH5A1 7915 ucsc.edu;bcgsc.ca 37 6 24520647 24520647 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . ALDH5A1 NM_170740 exon7 c.G928A p.A310T CACGCAGCAAACT 41 4 0.10 57 0 0 42 19 0 0.00 VWA7 80737 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31740800 31740800 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_025258 exon7 c.C1018A p.L340I CCACAAGGTGGCG 36 6 0.17 45 0 0 3 0 0.00 NELFE 7936 mdanderson.org 37 6 31922451 31922451 + Missense_Mutation SNP C C T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_002904 exon7 c.G623A p.R208Q CGATCCCGGTCTC 92 4 0.04 95 0 0 316 0 0.00 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 65596686 65596686 + Missense_Mutation SNP C C G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001142800 exon19 c.G2896C p.D966H TTACATCAAGTTC 85 34 0.40 122 0 0 0 0 ZNF292 23036 mdanderson.org 37 6 87966328 87966328 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_015021 exon8 c.G2981T p.C994F AAGATTGCTTTAA 50 3 0.06 50 0 0 3 0 0.00 SAMD5 389432 mdanderson.org 37 6 147830332 147830332 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001030060 exon1 c.G268T p.V90F GACGCCGTCCCCA 12 2 0.17 14 0 0 0 0 DPY19L2P1 0 broad.mit.edu 37 7 35131521 35131521 + RNA SNP G G A rs200009436 TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . . . . . CTTGACGCTTGCC 241 13 0.05 213 1 0.0046948357 0 0 DPY19L2P1 554236 hgsc.bcm.edu 37 7 35163774 35163774 + RNA SNP A A T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . . . . . CATAGAAAAAATT 83 34 0.41 62 0 0 0 0 LMTK2 22853 mdanderson.org 37 7 97823823 97823823 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_014916 exon11 c.G4046T p.W1349L AGGACTGGAAGAA 34 3 0.09 31 0 0 10 0 0.00 TMEM209 84928 broad.mit.edu 37 7 129843940 129843940 + Missense_Mutation SNP T T C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . TMEM209 NM_032842 exon2 c.A14G p.E5G TGTGCCTCCCCCT 61 3 0.05 54 1 0.0185185185 31 4 0 0.00 RIMS2 9699 broad.mit.edu;mdanderson.org 37 8 105261745 105261745 + Missense_Mutation SNP A A G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . RIMS2 NM_001100117 exon22 c.A3620G p.K1207R ACAAAAAGGGACA 94 4 0.04 85 0 0 1357 0 0 PTK2 5747 mdanderson.org 37 8 141684497 141684497 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_005607 exon29 c.C2675T p.A892V GGAGCTGCAGGAT 45 3 0.07 68 0 0 131 0 0.00 MROH6 642475 mdanderson.org 37 8 144650356 144650356 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001100878 exon11 c.C1720A p.H574N CATAGTGGGCCAC 130 5 0.04 99 0 0 9 0 0.00 PLEC 5339 mdanderson.org 37 8 144993851 144993851 + Missense_Mutation SNP G G T novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_201380 exon32 c.C10549A p.L3517M CTCTCAGCAGGCC 21 2 0.10 30 0 0 41 0 0.00 RECQL4 9401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 145741150 145741150 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_004260 exon6 c.C1256T p.P419L TCACCTGGCCGGG 97 32 0.33 74 0 0 40 7 0.18 COL5A1 1289 broad.mit.edu 37 9 137676839 137676839 + Missense_Mutation SNP A A G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . COL5A1 NM_000093 exon30 c.A2489G p.E830G AGGGGGAGATCGG 190 4 0.02 233 2 0.008583691 323 191 0 0.00 CYTB 0 hgsc.bcm.edu 37 MT 15575 15575 + Missense_Mutation SNP G G A novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . ENST00000361789 exon1 c.G829A p.A277T CTATTCGCCTACA 12 10 0.83 8 0 0 0 0 SUPT20HL1 100130302 hgsc.bcm.edu;mdanderson.org 37 X 24382423 24382423 + Missense_Mutation SNP G G C novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . . NM_001136234 exon1 c.G1546C p.A516P GCTGCTGCTGCTC 150 10 0.07 53 0 0 0 0 OCRL 4952 broad.mit.edu 37 X 128691868 128691868 + Missense_Mutation SNP A A G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . OCRL NM_000276 exon6 c.A380G p.K127R AGCAAAAGGACTC 708 8 0.01 357 1 0.0028011204 117 18 0 0.00 GPC3 2719 broad.mit.edu 37 X 133119396 133119396 + Silent SNP C C G novel TCGA-2G-AALQ-01A-12D-A42Y-10 TCGA-2G-AALQ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a396cd3-efe4-4bfb-9ade-41334932b612 0cd78c24-0592-4be8-8ef7-6b1c1858fc01 . GPC3 NM_001164617 exon1 c.G81C p.P27P CGGCGGCGGGGGC 245 5 0.02 139 1 0.0071942446 88 869 2 0.00