Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CEP85	64793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26584633	26584633	+	Splice_Site	SNP	G	G	C	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	CEP85	NM_022778	exon6	c.1038-1G>C	.	TGTGCAGGCAGAG		95	17	0.18	69	1	0.0144927536		61		0	0				
KPNA6	23633	mdanderson.org	37	1	32635499	32635499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_012316	exon13	c.G1261T	p.G421C	TCACTGGGCTGCA		66	4	0.06	54	0	0				7	0	0.00			
KIAA0754	643314	broad.mit.edu	37	1	39879055	39879055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	KIAA0754,rectum,carcinoma,0,1	KIAA0754	NM_015038	exon1	c.A3118G	p.T1040A	GAGCCCACCTCCC		25	5	0.20	25	2	0.08		93	1	0	0				
FAM129A	116496	mdanderson.org	37	1	184764457	184764457	+	Missense_Mutation	SNP	T	T	C	rs150071238	bycluster;byfrequency;by1000genomes	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_052966	exon14	c.A2441G	p.E814G	GGGAGCTCCCCCT		55	3	0.05	46	0	0	0.003			6	0	0.00			
EPRS	2058	broad.mit.edu	37	1	220195789	220195789	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	EPRS,NS,carcinoma,0,1	EPRS	NM_004446	exon9	c.C1015T	p.R339X	TTGCTCGCAAACA		263	6	0.02	199	1	0.0050251256		140	1	0	0				
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	bycluster;byfrequency	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC		119	5	0.04	122	0	0	0.003	0	1	5	0	0.00			
HPS6	79803	mdanderson.org	37	10	103826001	103826001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_024747	exon1	c.G770T	p.G257V	TCCGAGGCCTTCC		38	3	0.08	59	0	0				8	0	0.00			
MTCH2	23788	mdanderson.org	37	11	47647283	47647283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_014342	exon11	c.G692A	p.S231N	AACATACTCGCAA		47	3	0.06	75	0	0				112	0	0.00			
SPTBN2	6712	mdanderson.org	37	11	66454940	66454940	+	Missense_Mutation	SNP	C	C	T	rs370257588		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_006946	exon34	c.G6680A	p.R2227H	TGCTTGCGGCACA		18	2	0.11	26	0	0				4	0	0.00			
ANO1	55107	mdanderson.org	37	11	70026139	70026139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_018043	exon23	c.G2380T	p.G794W	GGCATTGGGAAGC		36	3	0.08	52	0	0				3	0	0.00			
CPM	1368	broad.mit.edu	37	12	69264140	69264140	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	CPM	NM_001005502	exon5	c.C471A	p.P157P	AGCATCGGGGAAA		87	4	0.05	60	0	0		30		0	0				
TAOK3	51347	mdanderson.org	37	12	118590215	118590215	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_016281	exon21	c.2353-1G>T	.	CCGTAACTGCGGA		44	3	0.07	39	0	0				1	0	0.00			
NCOR2	9612	hgsc.bcm.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2_ENST00000405201	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT		72	5	0.07	60	2	0.0333333333		0	11	4	0	0.00			
TPTE2P1	0	broad.mit.edu	37	13	25527621	25527623	+	RNA	DEL	AAC	AAC	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	AAC	AAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	ATCTATAACAATA		8	4	0.50	7	0	0				0	0				
PDX1	3651	broad.mit.edu	37	13	28494404	28494404	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	PDX1	NM_000209	exon1	c.G129C	p.P43P	GCCCCCGCCGCCG		97	4	0.04	95	1	0.0105263158		7		0	0				
NKX2-8	26257	broad.mit.edu	37	14	37050568	37050568	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	NKX2-8	NM_014360	exon2	c.C259A	p.R87R	CCCGCCGCTTCTT		97	3	0.03	94	1	0.0106382979		13		0	0				
SIX4	51804	mdanderson.org	37	14	61190581	61190581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_017420	exon1	c.C212T	p.A71V	GCCACTGCCCCTT		21	2	0.10	19	0	0				0	0				
HIF1A	3091	mdanderson.org	37	14	62162532	62162532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001530	exon1	c.G10T	p.A4S	GAGGGCGCCGGCG		46	3	0.07	57	0	0				4	0	0.00			
GPATCH2L	55668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	76644260	76644261	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_017972	exon7	c.1077_1078del	p.359_360del	GGGAAAAGAGAAC		144	28	0.19	109	0	0				0	0				
JAG2	3714	mdanderson.org	37	14	105615089	105615089	+	Nonsense_Mutation	SNP	G	G	T	rs370664484	alternate_allele	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_002226	exon15	c.C2013A	p.C671X	GGTGTCGCAGAGC		55	3	0.05	28	0	0				4	0	0.00			
.	0	broad.mit.edu	37	14	106206919	106206920	+	RNA	INS	-	-	C	rs67232680	bycluster	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	AGGGGCACCTTGT		10	3	0.30	5	0	0				0	0				
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7727167	7727167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_020877	exon74	c.C11345A	p.A3782D	AAAATGCCTGCAA		84	14	0.17	70	0	0				0	0				
.	0	broad.mit.edu	37	17	17579800	17579801	+	RNA	DEL	TA	TA	-	rs10695432	alternate_allele	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	TGTGTGTATGTGT		7	3	0.43	5	0	0				0	0				
SREBF1	6720	mdanderson.org	37	17	17716904	17716904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001005291	exon18	c.C3171A	p.S1057R	CCGGAAGCTCTGT		19	3	0.16	24	0	0				71	1	0.01			
.	0	broad.mit.edu	37	17	25988693	25988702	+	RNA	DEL	CACAGGTGGC	CACAGGTGGC	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	CACAGGTGGC	CACAGGTGGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	TAAAAGCACAGGT		7	2	0.29	9	0	0				0	0				
KRT14	3861	mdanderson.org	37	17	39743003	39743003	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_000526	exon1	c.C84T	p.S28S	GCGGCTGGAGCCG		33	3	0.09	17	0	0				2	0	0.00			
JUP	3728	mdanderson.org	37	17	39921060	39921060	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_021991	exon7	c.C1063T	p.Q355X	GGGCCTGCATCCC		56	3	0.05	55	0	0				101	0	0.00			
ANKRD20A5P	440482	mdanderson.org	37	18	14179583	14179583	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	GCCCTGGACAAGC		38	3	0.08	49	0	0				0	0				
CD97	976	mdanderson.org	37	19	14515207	14515207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_078481	exon13	c.G1462T	p.G488W	ATGCCTGGGCCAC		34	3	0.09	30	0	0				42	0	0.00			
MYO9B	4650	mdanderson.org	37	19	17309075	17309075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_004145	exon24	c.T4196C	p.L1399P	CCTCCCTCCCAGA		60	3	0.05	67	0	0				13	0	0.00			
EMILIN1	11117	mdanderson.org	37	2	27305716	27305716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_007046	exon4	c.A1277G	p.E426G	AGGAGGAGAGCTG		23	3	0.13	11	0	0				351	0	0.00			
AMMECR1L	83607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128628896	128628896	+	Silent	SNP	G	G	T	rs371126249		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	AMMECR1L	NM_031445	exon4	c.C445A	p.R149R	GAAGCCGCTTGTC		98	27	0.28	88	1	0.0113636364		22		0	0				
LRP1B	53353	broad.mit.edu	37	2	141751584	141751585	+	In_Frame_Ins	INS	-	-	CGCTTC	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	LRP1B	NM_018557	exon16	c.2624_2625insGAAGCG	p.D875delinsGSD	TCCTCATCGCTTC		86	8	0.09	82	0	0		1315		0	0				
UBR3	130507	mdanderson.org	37	2	170684527	170684527	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_172070	exon1	c.C510T	p.C170C	CGCCTGCGACTGC		17	3	0.18	16	0	0				0	0				
BAGE	85319	broad.mit.edu	37	21	11087766	11087766	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	ACTGTATTTTTTA		10	4	0.40	4	0	0				0	0				
ZNF74	7625	broad.mit.edu	37	22	20759905	20759905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	ZNF74	NM_001256523	exon4	c.G496A	p.G166R	CGAGGGGGGACCC		114	4	0.04	110	0	0		54		2	0	0.00			
SUSD2	56241	mdanderson.org	37	22	24580118	24580118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_019601	exon4	c.G454T	p.V152L	AACAAAGTGTCAA		60	3	0.05	46	0	0				1	0	0.00			
ATP2B2	491	mdanderson.org	37	3	10413495	10413495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001001331	exon12	c.C1657A	p.L553M	TTACCAGAATCTT		123	5	0.04	108	0	0				0	0				
QTRTD1	79691	mdanderson.org	37	3	113798888	113798888	+	Silent	SNP	G	G	T	rs370420090	alternate_allele	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001256835	exon7	c.G918T	p.P306P	CCAGCCGAATCCT		90	4	0.04	99	0	0				1	0	0.00			
RHO	6010	broad.mit.edu	37	3	129252455	129252455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	RHO	NM_000539	exon5	c.G941T	p.R314L	AGTTCCGGAACTG		75	3	0.04	66	0	0		57		0	0				
MUC4	4585	hgsc.bcm.edu	37	3	195509484	195509484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	MUC4_ENST00000463781,NS,carcinoma,-2,1	MUC4_ENST00000463781	NM_018406	exon2	c.C8967G	p.H2989Q	GGTGGCGTGACCT		52	3	0.06	48	1	0.0208333333		-2	1	0	0				
ZNF518B	85460	bcgsc.ca;mdanderson.org	37	4	10445650	10445650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	ZNF518B	NM_053042	exon3	c.C2303T	p.T768M	ACTGGCGTGGCAA		180	6	0.03	157	0	0		116		4	0	0.00			
TECRL	253017	broad.mit.edu	37	4	65240937	65240937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	TECRL	NM_001010874	exon2	c.C239A	p.T80K	GATTGTGTCACCT		468	8	0.02	412	0	0		106		0	0				
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87022243	87022243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	MAPK10_ENST00000449047,NS,carcinoma,0,3	MAPK10_ENST00000449047	NM_002753	exon8	c.C692A	p.A231D	TCAGGGGCTCTGT		155	33	0.21	130	0	0		0	3	5	2	0.40			
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	5462346	5462346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_015325	exon13	c.C2899T	p.Q967X	CTCATCCAAAACC		124	51	0.41	132	0	0				0	0				
ZSWIM6	57688	mdanderson.org	37	5	60628398	60628398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_020928	exon1	c.G299A	p.R100H	TTGAGCGCATCCC		50	3	0.06	58	0	0				0	0				
CAMK4	814	mdanderson.org	37	5	110819954	110819954	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001744	exon11	c.A1212G	p.K404K	AGTTAAAGGTGCA		47	3	0.06	75	0	0				6	0	0.00			
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu	37	5	145838663	145838664	+	In_Frame_Ins	INS	-	-	CCCAGG	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	TCERG1	NM_006706	exon4	c.655_656insCCCAGG	p.A219delinsAQA	GCCCAGGCCCAGG		135	42	0.31	128	0	0		148		2	0	0.00			
HIST1H2AA	221613	broad.mit.edu;mdanderson.org	37	6	25726743	25726743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	HIST1H2AA,NS,malignant_melanoma,+2,2	HIST1H2AA	NM_170745	exon1	c.G13A	p.G5R	GCTTCCCTCGTCC		63	3	0.05	70	0	0		34	2	0	0				
HLA-DRB6	0	broad.mit.edu	37	6	32521876	32521891	+	RNA	DEL	GGGAAAAAATTTATTT	GGGAAAAAATTTATTT	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	GGGAAAAAATTTATTT	GGGAAAAAATTTATTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	TTTCTGGGGAAAA		16	5	0.31	6	0	0				0	0				
SP8	221833	mdanderson.org	37	7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		71	4	0.06	59	0	0				0	0				
.	0	broad.mit.edu	37	7	65949693	65949694	+	RNA	INS	-	-	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	CCATTTTAAAAAA		6	2	0.33	5	0	0				0	0				
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	72892059	72892060	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	BAZ1B	NM_032408	exon7	c.1732_1733del	p.578_578del	ACCGCTTCTGTTT		200	30	0.15	173	0	0		147		4	0	0.00			
ZNF777	27153	mdanderson.org	37	7	149128883	149128883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_015694	exon6	c.C2480A	p.T827N	GTGTGGGTCCGCA		11	3	0.27	8	0	0				7	0	0.00			
UBXN8	7993	broad.mit.edu	37	8	30614674	30614675	+	RNA	INS	-	-	A	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	UBXN8	.	.	.	.	TCTATTTAAAAAA		6	2	0.33	5	0	0		13		0	0				
.	0	broad.mit.edu	37	8	122125472	122125472	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	GCCGTGTTTTTTT		9	3	0.33	4	0	0				0	0				
PLEC	5339	mdanderson.org	37	8	145001861	145001861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_201380	exon27	c.A3884G	p.E1295G	CCCACCTCCTGTG		37	3	0.08	34	0	0				0	0				
FGD3	89846	mdanderson.org	37	9	95797716	95797716	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001083536	exon18	c.C2023T	p.Q675X	AAGCTGCAGTGGG		67	4	0.06	82	0	0				18	0	0.00			
NAIF1	203245	mdanderson.org	37	9	130829051	130829051	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	NAIF1,NS,carcinoma,0,1	NAIF1	NM_197956	exon1	c.C330A	p.G110G	GCCACCGCCTGTC		42	4	0.10	59	0	0		0	1	2	0	0.00			
CDR1	1038	broad.mit.edu	37	X	139866495	139866495	+	Missense_Mutation	SNP	C	C	T	rs147745826	byfrequency	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	CDR1	NM_004065	exon1	c.G37A	p.V13I	AAGGTACGTCTTC		699	7	0.01	380	3	0.0078947368		58		0	0				
LTBP4	8425	hgsc.bcm.edu;mdanderson.org	37	19	41128449	41128449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	GACACAGCGGCCC		63	4	0.06	64	0	0				180	0	0.00